HEADER TRANSPORT PROTEIN 04-JUL-00 1E4H TITLE STRUCTURE OF HUMAN TRANSTHYRETIN COMPLEXED WITH BROMOPHENOLS: A NEW TITLE 2 MODE OF BINDING COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PREALBUMIN, ATTR, TBPA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: PLASMA KEYWDS TRANSPORT PROTEIN, TRANSPORT(THYROXINE), ENVIRONMENTAL POLLUTANTS, KEYWDS 2 BROMOPHENOLS EXPDTA X-RAY DIFFRACTION AUTHOR M.GHOSH,I.A.T.M.MEERTS,A.COOK,A.BERGMAN,A.BROUWER,L.N.JOHNSON REVDAT 6 13-DEC-23 1E4H 1 REMARK REVDAT 5 05-JUL-17 1E4H 1 REMARK REVDAT 4 21-SEP-11 1E4H 1 HEADER COMPND KEYWDS REMARK REVDAT 4 2 1 HETSYN FORMUL VERSN REVDAT 3 01-SEP-09 1E4H 1 HEADER KEYWDS REMARK SITE REVDAT 3 2 1 MASTER REVDAT 2 24-FEB-09 1E4H 1 VERSN REVDAT 1 29-AUG-00 1E4H 0 JRNL AUTH M.GHOSH,I.A.T.M.MEERTS,A.COOK,A.BERGMAN,A.BROUWER, JRNL AUTH 2 L.N.JOHNSON JRNL TITL STRUCTURE OF HUMAN TRANSTHYRETIN COMPLEXED WITH BROMOPHENOLS JRNL TITL 2 : A NEW MODE OF BINDING JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 56 1085 2000 JRNL REFN ISSN 0907-4449 JRNL PMID 10957627 JRNL DOI 10.1107/S0907444900008568 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.DE LA PAZ,J.M.BURRIDGE,S.J.OATLEY,C.C.F.BLAKE REMARK 1 TITL MULTIPLE MODES OF BINDING OF THYROID HORMONES AND OTHER REMARK 1 TITL 2 IODOTHYRONINES TO HUMAN PLASMA TRANSTHYRETIN REMARK 1 EDIT C.R.BEDDLE REMARK 1 REF THE DESIGN OF DRUGS TO 119 1992 REMARK 1 REF 2 MACROMOLECULAR TARGETS REMARK 1 PUBL JOHN WILEY & SONS LTD REMARK 1 REFERENCE 2 REMARK 1 AUTH C.C.F.BLAKE,M.J.GEISOW,S.J.OATLEY,C.RERAT,B.RERAT REMARK 1 TITL STRUCTURE OF PREALBUMIN.SECONDARY,TERTIARY AND QUATERNARY REMARK 1 TITL 2 INTERACTIONS DETERMINED BY FOURIER REFINEMRNT AND THYROXINE REMARK 1 TITL 3 BINDING REMARK 1 REF J.MOL.BIOL. V. 88 339 1978 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH C.C.F.BLAKE,S.J.OATLEY REMARK 1 TITL PROTEIN-DNA AND PROTEIN-HORMONE INTERACTIONS IN PREALBUMIN : REMARK 1 TITL 2 A MODEL OF THE THYROID HORMONE NUCLEAR RECEPTOR ? REMARK 1 REF NATURE V. 268 115 1977 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 201845 REMARK 1 DOI 10.1038/268115A0 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 0.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1133 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4138 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 246 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1760 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 152 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.300 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM19.SOL REMARK 3 PARAMETER FILE 3 : PBP_HALF.PAR REMARK 3 PARAMETER FILE 4 : GOL.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 3 : PBP_HALF.TOP REMARK 3 TOPOLOGY FILE 4 : GOL.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE PENTABROMOPHENOL MOLECULE IS REMARK 3 LOCATED RIGHT ON THE CRYSTALLOGRAPHIC Z AXIS. HALF THE MOLECULE REMARK 3 WAS INCLUDED IN THE REFINEMENT WHILE THE OTHER HALF WAS REMARK 3 GENERATED BY THE SYMMETRY OPERATION. WATER MOLECULES W302, W28, REMARK 3 W350 ALSO LOCATED ON THE SAME SYMMETRY AXIS WERE KEPT FIXED IN REMARK 3 POSITION DURING THE REFINEMENT. THERE WAS NO OBSERVABLE DENSITY REMARK 3 FOR THE RESIDUES 1-9, AS WELL AS FOR 126- 127 OF BOTH THE REMARK 3 CHAINS. THIS COORDINATE SET COMPRISES TWO CHAINS REPRESENTING REMARK 3 TWO CHEMICALLY EQUIVALENT, BUT CRYSTALLOGRAPHICALLY DISTINCT, REMARK 3 ENTITIES. THE OTHER HALF OF THE COMPLETE TETRAMER CAN BE REMARK 3 GENERATED FROM THIS DIMER BY THE APPLICATION OF THE REMARK 3 CRYSTALLOGRAPHIC TWO-FOLD SYMMETRY ALONG Z THROUGH THE ORIGIN OF REMARK 3 THE COORDINATE SYSTEM. REMARK 4 REMARK 4 1E4H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUL-00. REMARK 100 THE DEPOSITION ID IS D_1290004932. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-98 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : YALE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22174 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 21.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.27900 REMARK 200 R SYM FOR SHELL (I) : 0.27900 REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.851 REMARK 200 STARTING MODEL: PDB ENTRY 1TTA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 21.50000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.70000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.50000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.70000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 86.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 BR3 PBR A 998 LIES ON A SPECIAL POSITION. REMARK 375 O1 PBR A 998 LIES ON A SPECIAL POSITION. REMARK 375 C3 PBR A 998 LIES ON A SPECIAL POSITION. REMARK 375 C6 PBR A 998 LIES ON A SPECIAL POSITION. REMARK 375 BR3 PBR B 999 LIES ON A SPECIAL POSITION. REMARK 375 O1 PBR B 999 LIES ON A SPECIAL POSITION. REMARK 375 C3 PBR B 999 LIES ON A SPECIAL POSITION. REMARK 375 C6 PBR B 999 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2077 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2005 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2067 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 LYS A 126 REMARK 465 GLU A 127 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 GLU B 7 REMARK 465 SER B 8 REMARK 465 LYS B 9 REMARK 465 LYS B 126 REMARK 465 GLU B 127 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 ASP B 38 CG OD1 OD2 REMARK 470 ASP B 39 CG OD1 OD2 REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 GLU B 63 CG CD OE1 OE2 REMARK 470 ARG B 103 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 104 CG CD NE CZ NH1 NH2 REMARK 470 PRO B 125 CG CD REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PBR A 998 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PBR B 999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 990 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 990 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TTA RELATED DB: PDB REMARK 900 TRANSTHYRETIN (FORMERLY PREALBUMIN) REMARK 900 RELATED ID: 2PAB RELATED DB: PDB REMARK 900 RELATED ID: 1THC RELATED DB: PDB REMARK 900 RELATED ID: 1THA RELATED DB: PDB REMARK 900 RELATED ID: 1TLM RELATED DB: PDB REMARK 900 RELATED ID: 1TTB RELATED DB: PDB REMARK 900 RELATED ID: 1TTC RELATED DB: PDB REMARK 900 RELATED ID: 1ETA RELATED DB: PDB REMARK 900 RELATED ID: 1ETB RELATED DB: PDB REMARK 900 RELATED ID: 1RLB RELATED DB: PDB REMARK 900 RELATED ID: 1TYR RELATED DB: PDB REMARK 900 RELATED ID: 1BM7 RELATED DB: PDB REMARK 900 RELATED ID: 1BMZ RELATED DB: PDB REMARK 900 RELATED ID: 1QAB RELATED DB: PDB REMARK 900 RELATED ID: 2TRH RELATED DB: PDB REMARK 900 TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS REMARK 900 AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION REMARK 900 RELATED ID: 2TRY RELATED DB: PDB REMARK 900 TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS REMARK 900 AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION REMARK 900 RELATED ID: 2ROX RELATED DB: PDB REMARK 900 TRANSTHYRETIN (ALSO CALLED PREALBUMIN) COMPLEX WITH THYROXINE (T4) REMARK 900 RELATED ID: 2ROY RELATED DB: PDB REMARK 900 TRANSTHYRETIN (ALSO CALLED PREALBUMIN) COMPLEX WITH 3',5'-DINITRO-N- REMARK 900 ACETYL-L-THYRONINE REMARK 900 RELATED ID: 1TTR RELATED DB: PDB REMARK 900 TRANSTHYRETIN - V/122/I CARDIOMYOPATHIC MUTANT REMARK 900 RELATED ID: 1TSH RELATED DB: PDB REMARK 900 TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS REMARK 900 AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION REMARK 900 RELATED ID: 1E3F RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN TRANSTHYRETIN COMPLEXED WITH BROMOPHENOLS: A NEW REMARK 900 MODE OF BINDING REMARK 900 RELATED ID: 1BZD RELATED DB: PDB REMARK 900 TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS REMARK 900 AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION REMARK 900 RELATED ID: 1BZE RELATED DB: PDB REMARK 900 TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS REMARK 900 AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION REMARK 900 RELATED ID: 1BZ8 RELATED DB: PDB REMARK 900 TRANSTHYRETIN (DEL VAL122) REMARK 900 RELATED ID: 5TTR RELATED DB: PDB REMARK 900 LEU 55 PRO TRANSTHYRETIN CRYSTAL STRUCTURE REMARK 900 RELATED ID: 1E5A RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN TRANSTHYRETIN COMPLEXED WITH BROMOPHENOLS: A NEW REMARK 900 MODE OF BINDING DBREF 1E4H A 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 1E4H B 1 127 UNP P02766 TTHY_HUMAN 21 147 SEQADV 1E4H GLU A 63 UNP P02766 GLN 63 CONFLICT SEQRES 1 A 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 A 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 A 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 A 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 A 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 A 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 A 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 A 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 A 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 A 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 B 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 B 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 B 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 B 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 B 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 B 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 B 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 B 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 B 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 B 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU HET GOL A 990 6 HET PBR A 998 12 HET GOL B 990 6 HET PBR B 999 12 HETNAM GOL GLYCEROL HETNAM PBR PENTABROMOPHENOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 PBR 2(C6 H BR5 O) FORMUL 7 HOH *152(H2 O) HELIX 1 1 ASP A 74 LEU A 82 1 9 HELIX 2 2 ASP B 74 GLY B 83 1 10 SHEET 1 A 3 LEU A 12 ASP A 18 0 SHEET 2 A 3 ARG A 103 SER A 112 1 N TYR A 105 O MET A 13 SHEET 3 A 3 SER A 115 ASN A 124 -1 N THR A 123 O ARG A 104 SHEET 1 B 4 ALA A 91 ALA A 97 0 SHEET 2 B 4 GLY A 67 ILE A 73 -1 N ILE A 73 O ALA A 91 SHEET 3 B 4 ALA A 29 LYS A 35 -1 N PHE A 33 O LYS A 70 SHEET 4 B 4 TRP A 41 LYS A 48 -1 N GLY A 47 O VAL A 30 SHEET 1 C 3 LEU B 12 ASP B 18 0 SHEET 2 C 3 ARG B 104 SER B 112 1 N TYR B 105 O MET B 13 SHEET 3 C 3 SER B 115 THR B 123 -1 N THR B 123 O ARG B 104 SHEET 1 D 4 ALA B 91 ALA B 97 0 SHEET 2 D 4 GLY B 67 ILE B 73 -1 N ILE B 73 O ALA B 91 SHEET 3 D 4 ALA B 29 LYS B 35 -1 N PHE B 33 O LYS B 70 SHEET 4 D 4 TRP B 41 LYS B 48 -1 N GLY B 47 O VAL B 30 SITE 1 AC1 6 HOH A2084 LYS B 15 LEU B 17 ALA B 108 SITE 2 AC1 6 THR B 119 HOH B2058 SITE 1 AC2 2 LYS A 15 THR A 119 SITE 1 AC3 3 TRP A 41 LYS A 70 GLU A 72 SITE 1 AC4 11 LEU A 110 SER A 117 HOH A2077 LEU B 110 SITE 2 AC4 11 LEU B 111 SER B 112 SER B 115 TYR B 116 SITE 3 AC4 11 SER B 117 HOH B2067 HOH B2068 CRYST1 43.000 85.400 64.400 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023256 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015528 0.00000 MTRIX1 1 -0.993100 -0.117300 0.008200 85.51800 1 MTRIX2 1 -0.117400 0.993100 -0.000500 4.83600 1 MTRIX3 1 -0.008100 -0.001400 -1.000000 32.58500 1