data_1EJZ # _entry.id 1EJZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1EJZ pdb_00001ejz 10.2210/pdb1ejz/pdb RCSB RCSB010657 ? ? WWPDB D_1000010657 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1EC4 _pdbx_database_related.details 'Solution Structure of a Hexitol Nucleic Acid Duplex with Four Consecustive T:T Base Pairs' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1EJZ _pdbx_database_status.recvd_initial_deposition_date 2000-03-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lescrnier, E.' 1 'Esnouf, R.' 2 'Heus, H.A.' 3 'Hilbers, C.W.' 4 'Herdewijn, P.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Solution structure of a HNA-RNA hybrid.' Chem.Biol. 7 719 731 2000 CBOLE2 UK 1074-5521 2050 ? 10980452 '10.1016/S1074-5521(00)00017-X' 1 'Minor Groove Hydration Contributes to the relative Stability of HNA/RNA Hybrids Compared to HNA/DNA Complexes' J.Am.Chem.Soc. 120 5381 5394 1998 JACSAT US 0002-7863 0004 ? ? 10.1021/ja973721f # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lescrinier, E.' 1 ? primary 'Esnouf, R.' 2 ? primary 'Schraml, J.' 3 ? primary 'Busson, R.' 4 ? primary 'Heus, H.' 5 ? primary 'Hilbers, C.' 6 ? primary 'Herdewijn, P.' 7 ? 1 'De Winter, H.' 8 ? 1 'Lescrinier, E.' 9 ? 1 'Van Aerschot, A.' 10 ? 1 'Herdewijn, P.' 11 ? # _cell.entry_id 1EJZ _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EJZ _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*CP*GP*CP*UP*AP*CP*GP*C)-3') ; 2501.553 1 ? ? ? ? 2 polymer syn ;DNA (5'-H(*(6HG)P*(6HC)P*(6HG)P*(6HT)P*(6HA)P*(6HG)P*(6HC)P*(6HG))-3') ; 2579.844 1 ? ? ? 'THE SUGAR MOIETIES ARE NOT DEOXYRIBOSE BUT D-ARABINO-HEXITOL' 3 non-polymer syn 'PHOSPHORIC ACID MONO-(3-HYDROXY-PROPYL) ESTER' 156.074 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no CGCUACGC CGCUACGC A ? 2 polydeoxyribonucleotide no yes '(6HG)(6HC)(6HG)(6HT)(6HA)(6HG)(6HC)(6HG)' GCGTAGCG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 C n 1 4 U n 1 5 A n 1 6 C n 1 7 G n 1 8 C n 2 1 6HG n 2 2 6HC n 2 3 6HG n 2 4 6HT n 2 5 6HA n 2 6 6HG n 2 7 6HC n 2 8 6HG n # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1EJZ 1EJZ ? ? ? 2 2 PDB 1EJZ 1EJZ ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1EJZ A 1 ? 8 ? 1EJZ 1 ? 8 ? 1 8 2 2 1EJZ B 1 ? 8 ? 1EJZ 9 ? 16 ? 9 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6HA 'DNA linking' n "1',5'-ANHYDRO-2',3'-DIDEOXY-2'-(ADENIN-9-YL)-6'-O-PHOSPHORYL-D-ARABINO-HEXITOL" ? 'C11 H16 N5 O6 P' 345.248 6HC 'DNA linking' n "1',5'-ANHYDRO-2',3'-DIDEOXY-2'-(CYTOSIN-1-YL)-6'-O-PHOSPHORYL-D-ARABINO-HEXITOL" ? 'C10 H16 N3 O7 P' 321.224 6HG 'DNA linking' n "1',5'-ANHYDRO-2',3'-DIDEOXY-2'-(GUANIN-9-YL)-6'-O-PHOSPHORYL-D-ARABINO-HEXITOL" ? 'C11 H16 N5 O7 P' 361.248 6HT 'DNA linking' n "1',5'-ANHYDRO-2',3'-DIDEOXY-2'-(THYMIN-1-YL)-6'-O-PHOSPHORYL-D-ARABINO-HEXITOL" ? 'C11 H17 N2 O8 P' 336.235 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 PDI non-polymer . 'PHOSPHORIC ACID MONO-(3-HYDROXY-PROPYL) ESTER' ? 'C3 H9 O5 P' 156.074 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 1 2 1 DQF-COSY 1 3 1 'H-P Hetcor' 1 4 1 TOCSY 1 5 2 'Watergate NOESY' 2 6 2 '1D Jump-Return' 2 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 20 ambient 7 ? ? K 2 5 ambient 7 ? ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1.7 mM HNA, 1.7 mM RNA' D2O 2 '1.7 mM HNA, 1.7 mM RNA' '10% D2O 90% H2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 UNITY Varian 500 ? 2 UNITYPLUS Varian 500 ? # _pdbx_nmr_refine.entry_id 1EJZ _pdbx_nmr_refine.method 'Torsion Angles Dynamics and Gentle Molecular Dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1EJZ _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'structure closest to the average of all refined structures' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1EJZ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 5.3 Varian 1 processing Felix 97.0 Biosym 2 'data analysis' Felix 97.0 Biosym 3 'structure solution' X-PLOR 3.518 'A.T. Brunger' 4 refinement X-PLOR 3.518 'A.T. Brunger' 5 # _exptl.entry_id 1EJZ _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1EJZ _struct.title 'SOLUTION STRUCTURE OF A HNA-RNA HYBRID' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1EJZ _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'HNA-RNA complex, double helix, A-type conformation, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B 6HG 1 "O3'" ? ? ? 1_555 B 6HC 2 P ? ? B 6HG 9 B 6HC 10 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale2 covale both ? B 6HC 2 "O3'" ? ? ? 1_555 B 6HG 3 P ? ? B 6HC 10 B 6HG 11 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale3 covale both ? B 6HG 3 "O3'" ? ? ? 1_555 B 6HT 4 P ? ? B 6HG 11 B 6HT 12 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale4 covale both ? B 6HT 4 "O3'" ? ? ? 1_555 B 6HA 5 P ? ? B 6HT 12 B 6HA 13 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale5 covale both ? B 6HA 5 "O3'" ? ? ? 1_555 B 6HG 6 P ? ? B 6HA 13 B 6HG 14 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale6 covale both ? B 6HG 6 "O3'" ? ? ? 1_555 B 6HC 7 P ? ? B 6HG 14 B 6HC 15 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale7 covale both ? B 6HC 7 "O3'" ? ? ? 1_555 B 6HG 8 P ? ? B 6HC 15 B 6HG 16 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale8 covale one ? B 6HG 8 "O3'" ? ? ? 1_555 C PDI . P ? ? B 6HG 16 B PDI 17 1_555 ? ? ? ? ? ? ? 1.607 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B 6HG 8 N1 ? ? A C 1 B 6HG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B 6HG 8 O6 ? ? A C 1 B 6HG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B 6HG 8 N2 ? ? A C 1 B 6HG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B 6HC 7 N3 ? ? A G 2 B 6HC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B 6HC 7 O2 ? ? A G 2 B 6HC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B 6HC 7 N4 ? ? A G 2 B 6HC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 B 6HG 6 N1 ? ? A C 3 B 6HG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 B 6HG 6 O6 ? ? A C 3 B 6HG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 B 6HG 6 N2 ? ? A C 3 B 6HG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 N3 ? ? ? 1_555 B 6HA 5 N1 ? ? A U 4 B 6HA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 4 O4 ? ? ? 1_555 B 6HA 5 N6 ? ? A U 4 B 6HA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 B 6HT 4 N3 ? ? A A 5 B 6HT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 B 6HT 4 O4 ? ? A A 5 B 6HT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 N3 ? ? ? 1_555 B 6HG 3 N1 ? ? A C 6 B 6HG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 N4 ? ? ? 1_555 B 6HG 3 O6 ? ? A C 6 B 6HG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 6 O2 ? ? ? 1_555 B 6HG 3 N2 ? ? A C 6 B 6HG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N1 ? ? ? 1_555 B 6HC 2 N3 ? ? A G 7 B 6HC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 N2 ? ? ? 1_555 B 6HC 2 O2 ? ? A G 7 B 6HC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 7 O6 ? ? ? 1_555 B 6HC 2 N4 ? ? A G 7 B 6HC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 N3 ? ? ? 1_555 B 6HG 1 N1 ? ? A C 8 B 6HG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 8 N4 ? ? ? 1_555 B 6HG 1 O6 ? ? A C 8 B 6HG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 8 O2 ? ? ? 1_555 B 6HG 1 N2 ? ? A C 8 B 6HG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id PDI _struct_site.pdbx_auth_seq_id 17 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE PDI B 17' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id 6HG _struct_site_gen.label_asym_id B _struct_site_gen.label_seq_id 8 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id 6HG _struct_site_gen.auth_asym_id B _struct_site_gen.auth_seq_id 16 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # _database_PDB_matrix.entry_id 1EJZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1EJZ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 U 4 4 4 U U A . n A 1 5 A 5 5 5 A A A . n A 1 6 C 6 6 6 C C A . n A 1 7 G 7 7 7 G G A . n A 1 8 C 8 8 8 C C A . n B 2 1 6HG 1 9 9 6HG 6HG B . n B 2 2 6HC 2 10 10 6HC 6HC B . n B 2 3 6HG 3 11 11 6HG 6HG B . n B 2 4 6HT 4 12 12 6HT 6HT B . n B 2 5 6HA 5 13 13 6HA 6HA B . n B 2 6 6HG 6 14 14 6HG 6HG B . n B 2 7 6HC 7 15 15 6HC 6HC B . n B 2 8 6HG 8 16 16 6HG 6HG B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id PDI _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 17 _pdbx_nonpoly_scheme.auth_seq_num 17 _pdbx_nonpoly_scheme.pdb_mon_id PDI _pdbx_nonpoly_scheme.auth_mon_id PDI _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B 6HG 1 B 6HG 9 ? DG ? 2 B 6HC 2 B 6HC 10 ? DC ? 3 B 6HG 3 B 6HG 11 ? DG ? 4 B 6HT 4 B 6HT 12 ? DT ? 5 B 6HA 5 B 6HA 13 ? DA ? 6 B 6HG 6 B 6HG 14 ? DG ? 7 B 6HC 7 B 6HC 15 ? DC ? 8 B 6HG 8 B 6HG 16 ? DG ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-10-23 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_conn.pdbx_dist_value' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 15 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.71 113.10 4.61 0.50 N 2 1 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.77 106.40 -2.63 0.40 N 3 1 N7 A A 5 ? ? C8 A A 5 ? ? N9 A A 5 ? ? 117.51 113.80 3.71 0.50 N 4 1 N7 A G 7 ? ? C8 A G 7 ? ? N9 A G 7 ? ? 117.55 113.10 4.45 0.50 N 5 1 C8 A G 7 ? ? N9 A G 7 ? ? C4 A G 7 ? ? 103.82 106.40 -2.58 0.40 N # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1EJZ 'double helix' 1EJZ 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B 6HG 8 1_555 0.333 -0.258 -0.020 14.355 -17.109 -1.121 1 A_C1:6HG16_B A 1 ? B 16 ? 19 1 1 A G 2 1_555 B 6HC 7 1_555 -0.431 -0.343 0.282 16.687 -8.362 -1.486 2 A_G2:6HC15_B A 2 ? B 15 ? 19 1 1 A C 3 1_555 B 6HG 6 1_555 0.508 -0.305 -0.332 22.729 -18.939 -0.518 3 A_C3:6HG14_B A 3 ? B 14 ? 19 1 1 A U 4 1_555 B 6HA 5 1_555 0.113 -0.306 -0.165 19.044 -21.429 2.385 4 A_U4:6HA13_B A 4 ? B 13 ? 20 1 1 A A 5 1_555 B 6HT 4 1_555 0.129 -0.326 0.573 13.829 -17.719 -3.429 5 A_A5:6HT12_B A 5 ? B 12 ? 20 1 1 A C 6 1_555 B 6HG 3 1_555 0.563 -0.364 -0.073 18.578 -27.031 -3.957 6 A_C6:6HG11_B A 6 ? B 11 ? 19 1 1 A G 7 1_555 B 6HC 2 1_555 -0.243 -0.300 0.194 7.665 -13.548 0.623 7 A_G7:6HC10_B A 7 ? B 10 ? 19 1 1 A C 8 1_555 B 6HG 1 1_555 0.873 -0.313 -0.301 20.666 -20.382 2.380 8 A_C8:6HG9_B A 8 ? B 9 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B 6HG 8 1_555 A G 2 1_555 B 6HC 7 1_555 -0.887 -1.325 2.868 -4.064 12.559 36.934 -3.227 0.920 2.391 19.092 6.178 39.144 1 AA_C1G2:6HC156HG16_BB A 1 ? B 16 ? A 2 ? B 15 ? 1 A G 2 1_555 B 6HC 7 1_555 A C 3 1_555 B 6HG 6 1_555 0.280 -1.341 3.159 3.905 -1.906 33.726 -1.994 0.134 3.238 -3.268 -6.696 33.996 2 AA_G2C3:6HG146HC15_BB A 2 ? B 15 ? A 3 ? B 14 ? 1 A C 3 1_555 B 6HG 6 1_555 A U 4 1_555 B 6HA 5 1_555 0.169 -1.047 3.206 1.967 10.578 34.115 -3.139 -0.009 2.774 17.499 -3.253 35.723 3 AA_C3U4:6HA136HG14_BB A 3 ? B 14 ? A 4 ? B 13 ? 1 A U 4 1_555 B 6HA 5 1_555 A A 5 1_555 B 6HT 4 1_555 -0.558 -0.909 3.253 -2.374 10.925 37.732 -2.605 0.558 2.918 16.456 3.575 39.295 4 AA_U4A5:6HT126HA13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A A 5 1_555 B 6HT 4 1_555 A C 6 1_555 B 6HG 3 1_555 -0.193 -1.251 3.152 5.042 -2.848 35.839 -1.620 0.998 3.183 -4.591 -8.127 36.288 5 AA_A5C6:6HG116HT12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A C 6 1_555 B 6HG 3 1_555 A G 7 1_555 B 6HC 2 1_555 0.502 -1.578 3.197 -0.627 15.477 30.864 -4.757 -0.932 2.173 27.049 1.095 34.448 6 AA_C6G7:6HC106HG11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A G 7 1_555 B 6HC 2 1_555 A C 8 1_555 B 6HG 1 1_555 -0.039 -1.288 2.886 4.378 2.457 35.721 -2.384 0.602 2.771 3.981 -7.093 36.061 7 AA_G7C8:6HG96HC10_BB A 7 ? B 10 ? A 8 ? B 9 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'PHOSPHORIC ACID MONO-(3-HYDROXY-PROPYL) ESTER' _pdbx_entity_nonpoly.comp_id PDI #