data_1EKH # _entry.id 1EKH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1EKH pdb_00001ekh 10.2210/pdb1ekh/pdb RCSB RCSB010674 ? ? WWPDB D_1000010674 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-03-20 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-12-28 5 'Structure model' 2 0 2020-07-29 6 'Structure model' 2 1 2024-05-01 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 5 'Structure model' Advisory 5 5 'Structure model' 'Atomic model' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Structure summary' 9 6 'Structure model' 'Data collection' 10 6 'Structure model' 'Database references' 11 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' atom_site 2 5 'Structure model' chem_comp 3 5 'Structure model' database_PDB_caveat 4 5 'Structure model' entity 5 5 'Structure model' pdbx_branch_scheme 6 5 'Structure model' pdbx_chem_comp_identifier 7 5 'Structure model' pdbx_entity_branch 8 5 'Structure model' pdbx_entity_branch_descriptor 9 5 'Structure model' pdbx_entity_branch_link 10 5 'Structure model' pdbx_entity_branch_list 11 5 'Structure model' pdbx_entity_nonpoly 12 5 'Structure model' pdbx_nmr_software 13 5 'Structure model' pdbx_nonpoly_scheme 14 5 'Structure model' pdbx_struct_assembly_gen 15 5 'Structure model' pdbx_struct_conn_angle 16 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 17 5 'Structure model' pdbx_validate_chiral 18 5 'Structure model' pdbx_validate_close_contact 19 5 'Structure model' struct_asym 20 5 'Structure model' struct_conn 21 5 'Structure model' struct_site 22 5 'Structure model' struct_site_gen 23 6 'Structure model' chem_comp 24 6 'Structure model' chem_comp_atom 25 6 'Structure model' chem_comp_bond 26 6 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_atom_site.B_iso_or_equiv' 2 5 'Structure model' '_atom_site.Cartn_x' 3 5 'Structure model' '_atom_site.Cartn_y' 4 5 'Structure model' '_atom_site.Cartn_z' 5 5 'Structure model' '_atom_site.auth_asym_id' 6 5 'Structure model' '_atom_site.auth_atom_id' 7 5 'Structure model' '_atom_site.auth_comp_id' 8 5 'Structure model' '_atom_site.auth_seq_id' 9 5 'Structure model' '_atom_site.label_asym_id' 10 5 'Structure model' '_atom_site.label_atom_id' 11 5 'Structure model' '_atom_site.label_comp_id' 12 5 'Structure model' '_atom_site.label_entity_id' 13 5 'Structure model' '_atom_site.type_symbol' 14 5 'Structure model' '_chem_comp.mon_nstd_flag' 15 5 'Structure model' '_chem_comp.name' 16 5 'Structure model' '_chem_comp.type' 17 5 'Structure model' '_pdbx_nmr_software.name' 18 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 25 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 26 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 27 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 28 5 'Structure model' '_pdbx_struct_conn_angle.value' 29 6 'Structure model' '_chem_comp.pdbx_synonyms' 30 6 'Structure model' '_database_2.pdbx_DOI' 31 6 'Structure model' '_database_2.pdbx_database_accession' # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 ;DC A 6 HAS WRONG CHIRALITY AT ATOM C4' ; 2 ;DA A 8 HAS WRONG CHIRALITY AT ATOM C3' ; 3 ;DA B 18 HAS WRONG CHIRALITY AT ATOM C4' ; 4 ;DA B 18 HAS WRONG CHIRALITY AT ATOM C3' ; 5 '2GL D 1 HAS WRONG CHIRALITY AT ATOM C5' 6 'DDA E 1 HAS WRONG CHIRALITY AT ATOM C4' 7 'DDA F 1 HAS WRONG CHIRALITY AT ATOM C4' 8 ;CPH A 33 HAS WRONG CHIRALITY AT ATOM C4' ; 9 ;DA A 8 HAS WRONG CHIRALITY AT ATOM C4' ; 10 ;CPH A 33 HAS WRONG CHIRALITY AT ATOM C1' ; 11 ;CPH B 23 HAS WRONG CHIRALITY AT ATOM C1' ; 12 ;DT B 11 HAS WRONG CHIRALITY AT ATOM C1' ; 13 ;DA A 7 HAS WRONG CHIRALITY AT ATOM C3' ; # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.pdb_id 1EKH _pdbx_database_PDB_obs_spr.replace_pdb_id 1CQB _pdbx_database_PDB_obs_spr.date 2000-03-20 _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1EKH _pdbx_database_status.recvd_initial_deposition_date 2000-03-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1EKI _pdbx_database_related.details 'the average structure' _pdbx_database_related.content_type unspecified # _audit_author.name 'Gochin, M.' _audit_author.pdbx_ordinal 1 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'A high-resolution structure of a DNA-chromomycin-Co(II) complex determined from pseudocontact shifts in nuclear magnetic resonance.' 'Structure Fold.Des.' 8 441 452 2000 FODEFH UK 0969-2126 1263 ? 10801486 '10.1016/S0969-2126(00)00124-6' 1 'Structure determination by restrained molecular dynamics using NMR pseudocontact shifts as experimentally determined constraints' J.Am.Chem.Soc. 121 9276 9285 1999 JACSAT US 0002-7863 0004 ? ? 10.1021/ja9904540 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gochin, M.' 1 ? 1 'Tu, K.' 2 ? 1 'Gochin, M.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*TP*GP*GP*CP*CP*AP*A)-3') ; 2426.617 2 ? ? ? 'TWO MOLECULES OF THE DRUG CHROMOMYCIN A3 (1GL-2GL-DXB-DDA-DDA-1AR, CHAINS C, AND D) ARE BOUND IN THE MINOR GROOVE' 2 branched man '2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose-(1-3)-4-O-acetyl-2,6-dideoxy-beta-D-galactopyranose' 334.363 2 ? ? ? ? 3 branched man '3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose-(1-3)-beta-D-Olivopyranose-(1-3)-beta-D-Olivopyranose' 464.504 2 ? ? ? ? 4 non-polymer syn 'COBALT (II) ION' 58.933 1 ? ? ? ? 5 non-polymer syn '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' 420.410 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DT)(DG)(DG)(DC)(DC)(DA)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TTGGCCAA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'COBALT (II) ION' CO 5 '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' CPH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DG n 1 4 DG n 1 5 DC n 1 6 DC n 1 7 DA n 1 8 DA n # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'WURCS=2.0/2,2,1/[ad112m-1b_1-5_4*OCC/3=O][ad112m-1a_1-5_4*OC]/1-2/a3-b1' WURCS PDB2Glycan 1.1.0 2 2 '[][b-D-2-deoxy-Fucp4Ac]{[(3+1)][a-D-2-deoxy-Fucp4Me]{}}' LINUCS PDB-CARE ? 3 3 'WURCS=2.0/2,3,2/[ad122m-1b_1-5][ad611m-1a_1-5_3*C_4*OCC/3=O]/1-1-2/a3-b1_b3-c1' WURCS PDB2Glycan 1.1.0 4 3 '[][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2,6-deoxy-Glcp]{[(3+1)][a-L-2,6-deoxy-Glcp4Ac]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 1GL C1 O1 1 2GL O3 HO3 sing ? 2 3 2 DDA C1 O1 1 DDA O3 HO3 sing ? 3 3 3 ERI C1 O1 2 DDA O3 HO3 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1GL 'D-saccharide, alpha linking' . 2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose ;4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE; 2-deoxy-4-O-methyl-alpha-D-fucopyranose; 2,6-dideoxy-4-O-methyl-alpha-D-galactose; 2,6-dideoxy-4-O-methyl-D-galactose; 2,6-dideoxy-4-O-methyl-galactose ; 'C7 H14 O4' 162.184 2GL 'D-saccharide, beta linking' . 4-O-acetyl-2,6-dideoxy-beta-D-galactopyranose ;4-O-ACETYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE; 4-O-acetyl-2,6-dideoxy-beta-D-galactose; 4-O-acetyl-2,6-dideoxy-D-galactose; 4-O-acetyl-2,6-dideoxy-galactose ; 'C8 H14 O5' 190.194 CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 CPH non-polymer . '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' None 'C21 H24 O9' 420.410 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DDA 'D-saccharide, beta linking' . beta-D-Olivopyranose ;beta-D-Olivose; 2,6-dideoxy-beta-D-arabino-hexopyranose; 2,6-dideoxy-beta-D-glucopyranose; 2,6-dideoxy-beta-D-mannopyranose; 2-deoxy-beta-D-quinovopyranose; 2-deoxy-beta-D-rhamnoopyranose; D-Olivose; Olivose; 2,6-DIDEOXY-BETA-D-GLUCOSE; 2,6-DIDEOXY-BETA-D-MANNOSE ; 'C6 H12 O4' 148.157 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 ERI 'L-saccharide, alpha linking' n 3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose ;4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L-ARABINO-HEXOPYRANOSE; 3-C-methyl-4-O-acetyl-alpha-L-Olivose; 3-C-methyl-4-O-acetyl-L-Olivose; 3-C-methyl-4-O-acetyl-Olivose ; 'C9 H16 O5' 204.220 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1GL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-2-deoxy-Fucp4OMe DDA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DOlib DDA 'COMMON NAME' GMML 1.0 b-D-Olivopyranose DDA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-2,6-deoxy-Glcp DDA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Oli # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DA 7 7 7 DA DA A . n A 1 8 DA 8 8 8 DA DA A . n B 1 1 DT 1 11 11 DT DT B . n B 1 2 DT 2 12 12 DT DT B . n B 1 3 DG 3 13 13 DG DG B . n B 1 4 DG 4 14 14 DG DG B . n B 1 5 DC 5 15 15 DC DC B . n B 1 6 DC 6 16 16 DC DC B . n B 1 7 DA 7 17 17 DA DA B . n B 1 8 DA 8 18 18 DA DA B . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 2GL 1 C 2GL 1 A 2GL 32 n C 2 1GL 2 C 1GL 2 A 1GL 31 n D 2 2GL 1 D 2GL 1 B 2GL 22 n D 2 1GL 2 D 1GL 2 B 1GL 21 n E 3 DDA 1 E DDA 1 B DDA 26 n E 3 DDA 2 E DDA 2 B DDA 25 n E 3 ERI 3 E ERI 3 B ERI 24 n F 3 DDA 1 F DDA 1 B DDA 36 n F 3 DDA 2 F DDA 2 B DDA 35 n F 3 ERI 3 F ERI 3 B ERI 34 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 CO 1 41 41 CO CO A . H 5 CPH 1 33 33 CPH CPH A . I 5 CPH 1 23 23 CPH CPH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A CPH 33 ? O6 ? H CPH 1 O6 2 1 N 1 A CPH 33 ? O2 ? H CPH 1 O2 3 1 N 1 B CPH 23 ? O6 ? I CPH 1 O6 4 1 N 1 B CPH 23 ? O2 ? I CPH 1 O2 5 2 N 1 A CPH 33 ? O6 ? H CPH 1 O6 6 2 N 1 A CPH 33 ? O2 ? H CPH 1 O2 7 2 N 1 B CPH 23 ? O6 ? I CPH 1 O6 8 2 N 1 B CPH 23 ? O2 ? I CPH 1 O2 9 3 N 1 A CPH 33 ? O6 ? H CPH 1 O6 10 3 N 1 A CPH 33 ? O2 ? H CPH 1 O2 11 3 N 1 B CPH 23 ? O6 ? I CPH 1 O6 12 3 N 1 B CPH 23 ? O2 ? I CPH 1 O2 13 4 N 1 A CPH 33 ? O6 ? H CPH 1 O6 14 4 N 1 A CPH 33 ? O2 ? H CPH 1 O2 15 4 N 1 B CPH 23 ? O6 ? I CPH 1 O6 16 4 N 1 B CPH 23 ? O2 ? I CPH 1 O2 17 5 N 1 A CPH 33 ? O6 ? H CPH 1 O6 18 5 N 1 A CPH 33 ? O2 ? H CPH 1 O2 19 5 N 1 B CPH 23 ? O6 ? I CPH 1 O6 20 5 N 1 B CPH 23 ? O2 ? I CPH 1 O2 21 6 N 1 A CPH 33 ? O6 ? H CPH 1 O6 22 6 N 1 A CPH 33 ? O2 ? H CPH 1 O2 23 6 N 1 B CPH 23 ? O6 ? I CPH 1 O6 24 6 N 1 B CPH 23 ? O2 ? I CPH 1 O2 # _cell.entry_id 1EKH _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EKH _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1EKH _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1EKH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1EKH _struct.title 'NMR STRUCTURE OF D(TTGGCCAA)2 BOUND TO CHROMOMYCIN-A3 AND COBALT' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1EKH _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'drug bound in the minor groove of DNA, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 5 ? I N N 5 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1EKH _struct_ref.pdbx_db_accession 1EKH _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1EKH A 1 ? 8 ? 1EKH 1 ? 8 ? 1 8 2 1 1EKH B 1 ? 8 ? 1EKH 11 ? 18 ? 11 18 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C 2GL . O3 ? ? ? 1_555 C 1GL . C1 ? ? C 2GL 1 C 1GL 2 1_555 ? ? ? ? ? ? ? 1.457 sing ? covale2 covale both ? D 2GL . O3 ? ? ? 1_555 D 1GL . C1 ? ? D 2GL 1 D 1GL 2 1_555 ? ? ? ? ? ? ? 1.454 sing ? covale3 covale both ? E DDA . O3 ? ? ? 1_555 E DDA . C1 ? ? E DDA 1 E DDA 2 1_555 ? ? ? ? ? ? ? 1.423 sing ? covale4 covale both ? E DDA . O3 ? ? ? 1_555 E ERI . C1 ? ? E DDA 2 E ERI 3 1_555 ? ? ? ? ? ? ? 1.443 sing ? covale5 covale both ? F DDA . O3 ? ? ? 1_555 F DDA . C1 ? ? F DDA 1 F DDA 2 1_555 ? ? ? ? ? ? ? 1.424 sing ? covale6 covale both ? F DDA . O3 ? ? ? 1_555 F ERI . C1 ? ? F DDA 2 F ERI 3 1_555 ? ? ? ? ? ? ? 1.433 sing ? metalc1 metalc ? ? H CPH . O9 ? ? ? 1_555 G CO . CO ? ? A CPH 33 A CO 41 1_555 ? ? ? ? ? ? ? 1.911 ? ? metalc2 metalc ? ? H CPH . O1 ? ? ? 1_555 G CO . CO ? ? A CPH 33 A CO 41 1_555 ? ? ? ? ? ? ? 1.965 ? ? metalc3 metalc ? ? H CPH . C9 ? ? ? 1_555 G CO . CO ? ? A CPH 33 A CO 41 1_555 ? ? ? ? ? ? ? 2.387 ? ? metalc4 metalc ? ? G CO . CO ? ? ? 1_555 I CPH . O9 ? ? A CO 41 B CPH 23 1_555 ? ? ? ? ? ? ? 1.919 ? ? metalc5 metalc ? ? G CO . CO ? ? ? 1_555 I CPH . O1 ? ? A CO 41 B CPH 23 1_555 ? ? ? ? ? ? ? 2.023 ? ? metalc6 metalc ? ? G CO . CO ? ? ? 1_555 I CPH . C9 ? ? A CO 41 B CPH 23 1_555 ? ? ? ? ? ? ? 2.486 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 1 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 1 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 2 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 2 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 3 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 3 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 3 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 4 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 4 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 4 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 5 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 5 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 5 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 6 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 6 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 6 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 7 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 7 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 1 N3 ? ? A DA 8 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 8 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O9 ? H CPH . ? A CPH 33 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 O1 ? H CPH . ? A CPH 33 ? 1_555 93.6 ? 2 O9 ? H CPH . ? A CPH 33 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 C9 ? H CPH . ? A CPH 33 ? 1_555 36.3 ? 3 O1 ? H CPH . ? A CPH 33 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 C9 ? H CPH . ? A CPH 33 ? 1_555 78.0 ? 4 O9 ? H CPH . ? A CPH 33 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 O9 ? I CPH . ? B CPH 23 ? 1_555 134.2 ? 5 O1 ? H CPH . ? A CPH 33 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 O9 ? I CPH . ? B CPH 23 ? 1_555 123.1 ? 6 C9 ? H CPH . ? A CPH 33 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 O9 ? I CPH . ? B CPH 23 ? 1_555 158.6 ? 7 O9 ? H CPH . ? A CPH 33 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 O1 ? I CPH . ? B CPH 23 ? 1_555 124.2 ? 8 O1 ? H CPH . ? A CPH 33 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 O1 ? I CPH . ? B CPH 23 ? 1_555 83.5 ? 9 C9 ? H CPH . ? A CPH 33 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 O1 ? I CPH . ? B CPH 23 ? 1_555 89.7 ? 10 O9 ? I CPH . ? B CPH 23 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 O1 ? I CPH . ? B CPH 23 ? 1_555 89.2 ? 11 O9 ? H CPH . ? A CPH 33 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 C9 ? I CPH . ? B CPH 23 ? 1_555 160.7 ? 12 O1 ? H CPH . ? A CPH 33 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 C9 ? I CPH . ? B CPH 23 ? 1_555 90.1 ? 13 C9 ? H CPH . ? A CPH 33 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 C9 ? I CPH . ? B CPH 23 ? 1_555 161.7 ? 14 O9 ? I CPH . ? B CPH 23 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 C9 ? I CPH . ? B CPH 23 ? 1_555 34.3 ? 15 O1 ? I CPH . ? B CPH 23 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 C9 ? I CPH . ? B CPH 23 ? 1_555 75.0 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O1 E DDA 1 ? ? C2 B CPH 23 ? ? 1.43 2 1 O1 D 2GL 1 ? ? C6 B CPH 23 ? ? 1.44 3 1 O1 C 2GL 1 ? ? C6 A CPH 33 ? ? 1.45 4 1 O1 F DDA 1 ? ? C2 A CPH 33 ? ? 1.45 5 2 O1 E DDA 1 ? ? C2 B CPH 23 ? ? 1.41 6 2 O1 F DDA 1 ? ? C2 A CPH 33 ? ? 1.44 7 2 O1 C 2GL 1 ? ? C6 A CPH 33 ? ? 1.44 8 2 O1 D 2GL 1 ? ? C6 B CPH 23 ? ? 1.44 9 3 O1 E DDA 1 ? ? C2 B CPH 23 ? ? 1.42 10 3 O1 D 2GL 1 ? ? C6 B CPH 23 ? ? 1.45 11 3 O1 C 2GL 1 ? ? C6 A CPH 33 ? ? 1.45 12 3 O1 F DDA 1 ? ? C2 A CPH 33 ? ? 1.48 13 4 O1 E DDA 1 ? ? C2 B CPH 23 ? ? 1.41 14 4 O1 F DDA 1 ? ? C2 A CPH 33 ? ? 1.41 15 4 O1 D 2GL 1 ? ? C6 B CPH 23 ? ? 1.44 16 4 O1 C 2GL 1 ? ? C6 A CPH 33 ? ? 1.44 17 5 O1 D 2GL 1 ? ? C6 B CPH 23 ? ? 1.42 18 5 O1 E DDA 1 ? ? C2 B CPH 23 ? ? 1.42 19 5 O1 C 2GL 1 ? ? C6 A CPH 33 ? ? 1.43 20 5 O1 F DDA 1 ? ? C2 A CPH 33 ? ? 1.44 21 6 O1 D 2GL 1 ? ? C6 B CPH 23 ? ? 1.43 22 6 O1 C 2GL 1 ? ? C6 A CPH 33 ? ? 1.43 23 6 O1 E DDA 1 ? ? C2 B CPH 23 ? ? 1.43 24 6 O1 F DDA 1 ? ? C2 A CPH 33 ? ? 1.44 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 5 _pdbx_validate_rmsd_bond.auth_atom_id_1 N1 _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 DT _pdbx_validate_rmsd_bond.auth_seq_id_1 11 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 C2 _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 DT _pdbx_validate_rmsd_bond.auth_seq_id_2 11 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.428 _pdbx_validate_rmsd_bond.bond_target_value 1.376 _pdbx_validate_rmsd_bond.bond_deviation 0.052 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.008 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DG 3 ? ? 129.13 119.70 9.43 1.20 Y 2 1 P A DG 3 ? ? "O5'" A DG 3 ? ? "C5'" A DG 3 ? ? 132.27 120.90 11.37 1.60 N 3 1 "C3'" A DG 3 ? ? "O3'" A DG 3 ? ? P A DG 4 ? ? 127.42 119.70 7.72 1.20 Y 4 1 P A DG 4 ? ? "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? 133.29 120.90 12.39 1.60 N 5 1 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 101.95 104.50 -2.55 0.40 N 6 1 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 126.18 119.90 6.28 0.70 N 7 1 "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? P A DC 5 ? ? 127.40 119.70 7.70 1.20 Y 8 1 P A DC 5 ? ? "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? 130.80 120.90 9.90 1.60 N 9 1 "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? 101.53 104.50 -2.97 0.40 N 10 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.52 108.30 6.22 0.30 N 11 1 "C3'" A DC 5 ? ? "O3'" A DC 5 ? ? P A DC 6 ? ? 137.58 119.70 17.88 1.20 Y 12 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 115.49 108.30 7.19 0.30 N 13 1 C6 A DC 6 ? ? N1 A DC 6 ? ? C2 A DC 6 ? ? 117.03 120.30 -3.27 0.40 N 14 1 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DA 7 ? ? 129.67 119.70 9.97 1.20 Y 15 1 P A DA 7 ? ? "O5'" A DA 7 ? ? "C5'" A DA 7 ? ? 131.60 120.90 10.70 1.60 N 16 1 "C3'" A DA 7 ? ? "O3'" A DA 7 ? ? P A DA 8 ? ? 137.08 119.70 17.38 1.20 Y 17 1 P B DT 12 ? ? "O5'" B DT 12 ? ? "C5'" B DT 12 ? ? 130.73 120.90 9.83 1.60 N 18 1 "C3'" B DT 12 ? ? "O3'" B DT 12 ? ? P B DG 13 ? ? 128.27 119.70 8.57 1.20 Y 19 1 P B DG 13 ? ? "O5'" B DG 13 ? ? "C5'" B DG 13 ? ? 131.70 120.90 10.80 1.60 N 20 1 P B DG 14 ? ? "O5'" B DG 14 ? ? "C5'" B DG 14 ? ? 132.64 120.90 11.74 1.60 N 21 1 N3 B DG 14 ? ? C2 B DG 14 ? ? N2 B DG 14 ? ? 125.31 119.90 5.41 0.70 N 22 1 "C3'" B DG 14 ? ? "O3'" B DG 14 ? ? P B DC 15 ? ? 128.78 119.70 9.08 1.20 Y 23 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 110.80 108.30 2.50 0.30 N 24 1 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DA 18 ? ? 134.45 119.70 14.75 1.20 Y 25 2 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DG 3 ? ? 127.19 119.70 7.49 1.20 Y 26 2 P A DG 3 ? ? "O5'" A DG 3 ? ? "C5'" A DG 3 ? ? 132.16 120.90 11.26 1.60 N 27 2 P A DG 4 ? ? "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? 133.19 120.90 12.29 1.60 N 28 2 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 102.09 104.50 -2.41 0.40 N 29 2 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 126.41 119.90 6.51 0.70 N 30 2 "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? P A DC 5 ? ? 129.01 119.70 9.31 1.20 Y 31 2 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.25 108.30 1.95 0.30 N 32 2 "C3'" A DC 5 ? ? "O3'" A DC 5 ? ? P A DC 6 ? ? 133.80 119.70 14.10 1.20 Y 33 2 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.81 108.30 3.51 0.30 N 34 2 "C3'" A DA 7 ? ? "O3'" A DA 7 ? ? P A DA 8 ? ? 136.27 119.70 16.57 1.20 Y 35 2 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 110.49 108.30 2.19 0.30 N 36 2 "C3'" B DT 12 ? ? "O3'" B DT 12 ? ? P B DG 13 ? ? 136.13 119.70 16.43 1.20 Y 37 2 P B DG 14 ? ? "O5'" B DG 14 ? ? "C5'" B DG 14 ? ? 132.12 120.90 11.22 1.60 N 38 2 N3 B DG 14 ? ? C2 B DG 14 ? ? N2 B DG 14 ? ? 126.16 119.90 6.26 0.70 N 39 2 "C3'" B DG 14 ? ? "O3'" B DG 14 ? ? P B DC 15 ? ? 128.36 119.70 8.66 1.20 Y 40 2 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 111.05 108.30 2.75 0.30 N 41 2 N1 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 122.54 118.90 3.64 0.60 N 42 2 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DA 18 ? ? 138.24 119.70 18.54 1.20 Y 43 3 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DG 3 ? ? 128.89 119.70 9.19 1.20 Y 44 3 P A DG 3 ? ? "O5'" A DG 3 ? ? "C5'" A DG 3 ? ? 131.62 120.90 10.72 1.60 N 45 3 N3 A DG 3 ? ? C2 A DG 3 ? ? N2 A DG 3 ? ? 124.18 119.90 4.28 0.70 N 46 3 "C3'" A DG 3 ? ? "O3'" A DG 3 ? ? P A DG 4 ? ? 128.91 119.70 9.21 1.20 Y 47 3 P A DG 4 ? ? "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? 133.48 120.90 12.58 1.60 N 48 3 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 101.80 104.50 -2.70 0.40 N 49 3 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.43 108.30 2.13 0.30 N 50 3 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 126.65 119.90 6.75 0.70 N 51 3 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.68 108.30 2.38 0.30 N 52 3 "C4'" A DC 6 ? ? "C3'" A DC 6 ? ? "C2'" A DC 6 ? ? 92.71 102.20 -9.49 0.70 N 53 3 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.84 108.30 2.54 0.30 N 54 3 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DA 7 ? ? 134.41 119.70 14.71 1.20 Y 55 3 "C3'" A DA 7 ? ? "O3'" A DA 7 ? ? P A DA 8 ? ? 131.87 119.70 12.17 1.20 Y 56 3 P B DT 12 ? ? "O5'" B DT 12 ? ? "C5'" B DT 12 ? ? 133.71 120.90 12.81 1.60 N 57 3 "C3'" B DG 13 ? ? "O3'" B DG 13 ? ? P B DG 14 ? ? 128.13 119.70 8.43 1.20 Y 58 3 P B DG 14 ? ? "O5'" B DG 14 ? ? "C5'" B DG 14 ? ? 134.12 120.90 13.22 1.60 N 59 3 "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? "C2'" B DG 14 ? ? 98.00 102.20 -4.20 0.70 N 60 3 N3 B DG 14 ? ? C2 B DG 14 ? ? N2 B DG 14 ? ? 125.87 119.90 5.97 0.70 N 61 3 "C3'" B DG 14 ? ? "O3'" B DG 14 ? ? P B DC 15 ? ? 129.94 119.70 10.24 1.20 Y 62 3 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 111.62 108.30 3.32 0.30 N 63 3 N1 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 122.51 118.90 3.61 0.60 N 64 3 "C3'" B DC 15 ? ? "O3'" B DC 15 ? ? P B DC 16 ? ? 130.85 119.70 11.15 1.20 Y 65 3 "O4'" B DC 16 ? ? "C1'" B DC 16 ? ? N1 B DC 16 ? ? 111.40 108.30 3.10 0.30 N 66 3 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DA 18 ? ? 135.85 119.70 16.15 1.20 Y 67 4 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.37 108.30 2.07 0.30 N 68 4 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.80 108.30 3.50 0.30 N 69 4 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DG 3 ? ? 127.37 119.70 7.67 1.20 Y 70 4 P A DG 3 ? ? "O5'" A DG 3 ? ? "C5'" A DG 3 ? ? 132.16 120.90 11.26 1.60 N 71 4 "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? "C2'" A DG 3 ? ? 94.36 102.20 -7.84 0.70 N 72 4 "C3'" A DG 3 ? ? "O3'" A DG 3 ? ? P A DG 4 ? ? 137.01 119.70 17.31 1.20 Y 73 4 P A DG 4 ? ? "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? 140.27 120.90 19.37 1.60 N 74 4 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 101.82 104.50 -2.68 0.40 N 75 4 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 97.68 102.20 -4.52 0.70 N 76 4 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 125.89 119.90 5.99 0.70 N 77 4 "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? 97.91 102.20 -4.29 0.70 N 78 4 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.25 108.30 2.95 0.30 N 79 4 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.14 108.30 1.84 0.30 N 80 4 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DA 7 ? ? 127.13 119.70 7.43 1.20 Y 81 4 P A DA 7 ? ? "O5'" A DA 7 ? ? "C5'" A DA 7 ? ? 133.50 120.90 12.60 1.60 N 82 4 "C3'" A DA 7 ? ? "O3'" A DA 7 ? ? P A DA 8 ? ? 133.77 119.70 14.07 1.20 Y 83 4 P A DA 8 ? ? "O5'" A DA 8 ? ? "C5'" A DA 8 ? ? 134.71 120.90 13.81 1.60 N 84 4 "O4'" B DT 11 ? ? "C1'" B DT 11 ? ? N1 B DT 11 ? ? 110.28 108.30 1.98 0.30 N 85 4 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 110.85 108.30 2.55 0.30 N 86 4 "C4'" B DG 13 ? ? "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? 94.17 102.20 -8.03 0.70 N 87 4 "C3'" B DG 13 ? ? "O3'" B DG 13 ? ? P B DG 14 ? ? 137.72 119.70 18.02 1.20 Y 88 4 P B DG 14 ? ? "O5'" B DG 14 ? ? "C5'" B DG 14 ? ? 138.19 120.90 17.29 1.60 N 89 4 N3 B DG 14 ? ? C2 B DG 14 ? ? N2 B DG 14 ? ? 126.64 119.90 6.74 0.70 N 90 4 "C3'" B DG 14 ? ? "O3'" B DG 14 ? ? P B DC 15 ? ? 127.28 119.70 7.58 1.20 Y 91 4 "C1'" B DC 15 ? ? "O4'" B DC 15 ? ? "C4'" B DC 15 ? ? 104.05 110.10 -6.05 1.00 N 92 4 "C4'" B DC 15 ? ? "C3'" B DC 15 ? ? "C2'" B DC 15 ? ? 96.99 102.20 -5.21 0.70 N 93 4 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 112.75 108.30 4.45 0.30 N 94 4 "C3'" B DC 16 ? ? "O3'" B DC 16 ? ? P B DA 17 ? ? 128.82 119.70 9.12 1.20 Y 95 4 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DA 18 ? ? 127.56 119.70 7.86 1.20 Y 96 5 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.43 108.30 2.13 0.30 N 97 5 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.89 108.30 2.59 0.30 N 98 5 "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? "C2'" A DG 3 ? ? 93.84 102.20 -8.36 0.70 N 99 5 "C3'" A DG 3 ? ? "O3'" A DG 3 ? ? P A DG 4 ? ? 137.39 119.70 17.69 1.20 Y 100 5 P A DG 4 ? ? "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? 137.81 120.90 16.91 1.60 N 101 5 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 126.77 119.90 6.87 0.70 N 102 5 P A DC 6 ? ? "O5'" A DC 6 ? ? "C5'" A DC 6 ? ? 133.04 120.90 12.14 1.60 N 103 5 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DA 7 ? ? 141.72 119.70 22.02 1.20 Y 104 5 "C3'" A DA 7 ? ? "O3'" A DA 7 ? ? P A DA 8 ? ? 134.49 119.70 14.79 1.20 Y 105 5 "O4'" B DT 11 ? ? "C1'" B DT 11 ? ? N1 B DT 11 ? ? 113.10 108.30 4.80 0.30 N 106 5 N3 B DT 11 ? ? C2 B DT 11 ? ? O2 B DT 11 ? ? 118.68 122.30 -3.62 0.60 N 107 5 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 111.19 108.30 2.89 0.30 N 108 5 "C4'" B DG 13 ? ? "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? 94.13 102.20 -8.07 0.70 N 109 5 "C3'" B DG 13 ? ? "O3'" B DG 13 ? ? P B DG 14 ? ? 137.41 119.70 17.71 1.20 Y 110 5 P B DG 14 ? ? "O5'" B DG 14 ? ? "C5'" B DG 14 ? ? 137.03 120.90 16.13 1.60 N 111 5 N3 B DG 14 ? ? C2 B DG 14 ? ? N2 B DG 14 ? ? 125.52 119.90 5.62 0.70 N 112 5 "C3'" B DC 15 ? ? "O3'" B DC 15 ? ? P B DC 16 ? ? 133.20 119.70 13.50 1.20 Y 113 5 "O4'" B DC 16 ? ? "C1'" B DC 16 ? ? N1 B DC 16 ? ? 111.39 108.30 3.09 0.30 N 114 5 "C3'" B DC 16 ? ? "O3'" B DC 16 ? ? P B DA 17 ? ? 131.90 119.70 12.20 1.20 Y 115 5 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DA 18 ? ? 134.17 119.70 14.47 1.20 Y 116 5 P B DA 18 ? ? "O5'" B DA 18 ? ? "C5'" B DA 18 ? ? 135.57 120.90 14.67 1.60 N 117 6 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.50 108.30 2.20 0.30 N 118 6 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.04 108.30 2.74 0.30 N 119 6 P A DG 3 ? ? "O5'" A DG 3 ? ? "C5'" A DG 3 ? ? 133.22 120.90 12.32 1.60 N 120 6 "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? "C2'" A DG 3 ? ? 94.41 102.20 -7.79 0.70 N 121 6 "C3'" A DG 3 ? ? "O3'" A DG 3 ? ? P A DG 4 ? ? 130.53 119.70 10.83 1.20 Y 122 6 P A DG 4 ? ? "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? 139.13 120.90 18.23 1.60 N 123 6 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 101.71 104.50 -2.79 0.40 N 124 6 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 126.43 119.90 6.53 0.70 N 125 6 "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? P A DC 5 ? ? 127.38 119.70 7.68 1.20 Y 126 6 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.43 108.30 4.13 0.30 N 127 6 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 114.39 108.30 6.09 0.30 N 128 6 C6 A DC 6 ? ? N1 A DC 6 ? ? C2 A DC 6 ? ? 117.83 120.30 -2.47 0.40 N 129 6 "C3'" A DA 7 ? ? "C2'" A DA 7 ? ? "C1'" A DA 7 ? ? 96.30 102.40 -6.10 0.80 N 130 6 "O4'" B DT 11 ? ? "C1'" B DT 11 ? ? N1 B DT 11 ? ? 110.10 108.30 1.80 0.30 N 131 6 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 110.97 108.30 2.67 0.30 N 132 6 P B DG 13 ? ? "O5'" B DG 13 ? ? "C5'" B DG 13 ? ? 131.56 120.90 10.66 1.60 N 133 6 "C4'" B DG 13 ? ? "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? 94.00 102.20 -8.20 0.70 N 134 6 "C3'" B DG 13 ? ? "O3'" B DG 13 ? ? P B DG 14 ? ? 135.77 119.70 16.07 1.20 Y 135 6 P B DG 14 ? ? "O5'" B DG 14 ? ? "C5'" B DG 14 ? ? 138.55 120.90 17.65 1.60 N 136 6 N3 B DG 14 ? ? C2 B DG 14 ? ? N2 B DG 14 ? ? 127.07 119.90 7.17 0.70 N 137 6 "C3'" B DG 14 ? ? "O3'" B DG 14 ? ? P B DC 15 ? ? 128.26 119.70 8.56 1.20 Y 138 6 "C4'" B DC 15 ? ? "C3'" B DC 15 ? ? "C2'" B DC 15 ? ? 96.90 102.20 -5.30 0.70 N 139 6 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 112.61 108.30 4.31 0.30 N 140 6 "C3'" B DC 15 ? ? "O3'" B DC 15 ? ? P B DC 16 ? ? 136.28 119.70 16.58 1.20 Y 141 6 "O4'" B DC 16 ? ? "C1'" B DC 16 ? ? N1 B DC 16 ? ? 113.02 108.30 4.72 0.30 N 142 6 P B DA 17 ? ? "O5'" B DA 17 ? ? "C5'" B DA 17 ? ? 133.96 120.90 13.06 1.60 N 143 6 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DA 18 ? ? 139.89 119.70 20.19 1.20 Y # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 "C4'" ? A DC 6 ? 'WRONG HAND' . 2 2 "C3'" ? A DA 8 ? 'WRONG HAND' . 3 2 "C4'" ? B DA 18 ? 'WRONG HAND' . 4 3 "C3'" ? A DA 8 ? 'WRONG HAND' . 5 3 "C3'" ? B DA 18 ? 'WRONG HAND' . 6 3 C5 ? D 2GL 1 ? 'WRONG HAND' . 7 3 C4 ? E DDA 1 ? 'WRONG HAND' . 8 3 C4 ? F DDA 1 ? 'WRONG HAND' . 9 3 "C4'" ? A CPH 33 ? 'WRONG HAND' . 10 4 "C4'" ? A DA 8 ? 'WRONG HAND' . 11 4 "C1'" ? A CPH 33 ? PLANAR . 12 4 "C4'" ? A CPH 33 ? 'WRONG HAND' . 13 4 "C1'" ? B CPH 23 ? PLANAR . 14 5 "C3'" ? A DA 8 ? 'WRONG HAND' . 15 5 "C1'" ? B DT 11 ? 'WRONG HAND' . 16 5 "C4'" ? B DA 18 ? 'WRONG HAND' . 17 5 "C1'" ? A CPH 33 ? PLANAR . 18 5 "C1'" ? B CPH 23 ? PLANAR . 19 6 "C3'" ? A DA 7 ? 'WRONG HAND' . 20 6 "C3'" ? A DA 8 ? 'WRONG HAND' . 21 6 "C3'" ? B DA 18 ? 'WRONG HAND' . 22 6 C5 ? D 2GL 1 ? 'WRONG HAND' . 23 6 C4 ? E DDA 1 ? 'WRONG HAND' . 24 6 C4 ? F DDA 1 ? 'WRONG HAND' . 25 6 "C1'" ? B CPH 23 ? PLANAR . # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 6 ? ? 0.068 'SIDE CHAIN' 2 2 DT B 11 ? ? 0.066 'SIDE CHAIN' 3 2 DG B 14 ? ? 0.066 'SIDE CHAIN' 4 3 DT A 1 ? ? 0.087 'SIDE CHAIN' 5 3 DC A 6 ? ? 0.129 'SIDE CHAIN' 6 3 DA A 8 ? ? 0.059 'SIDE CHAIN' 7 3 DT B 11 ? ? 0.079 'SIDE CHAIN' 8 3 DG B 13 ? ? 0.064 'SIDE CHAIN' 9 4 DT A 2 ? ? 0.094 'SIDE CHAIN' 10 4 DC A 6 ? ? 0.075 'SIDE CHAIN' 11 4 DT B 12 ? ? 0.089 'SIDE CHAIN' 12 4 DG B 14 ? ? 0.057 'SIDE CHAIN' 13 4 DA B 18 ? ? 0.091 'SIDE CHAIN' 14 5 DT A 2 ? ? 0.073 'SIDE CHAIN' 15 5 DT B 11 ? ? 0.090 'SIDE CHAIN' 16 6 DT A 2 ? ? 0.071 'SIDE CHAIN' 17 6 DG A 4 ? ? 0.070 'SIDE CHAIN' 18 6 DC A 6 ? ? 0.087 'SIDE CHAIN' 19 6 DA A 8 ? ? 0.082 'SIDE CHAIN' 20 6 DT B 12 ? ? 0.088 'SIDE CHAIN' 21 6 DG B 14 ? ? 0.076 'SIDE CHAIN' 22 6 DC B 16 ? ? 0.082 'SIDE CHAIN' 23 6 DA B 17 ? ? 0.069 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 1EKH _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 6 _pdbx_nmr_ensemble.conformer_selection_criteria 'MINIMIZED AVERAGED COORDINATES FROM 6 RUNS' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents 'D2O, 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system ? # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength '100mM NACL' _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 COSY 1 3 1 TOCSY 1 # _pdbx_nmr_details.entry_id 1EKH _pdbx_nmr_details.text ;THE STRUCTURE WAS DETERMINED USING PSEUDOCONTACT SHIFTS IN THE NMR SPECTRUM. PSEUDOCONTACT SHIFTS WERE MEASURED AS THE DIFFERENCE IN THE CHEMICAL SHIFT BETWEEN THE CO(II) COMPLEX AND THE ZN(II) COMPLEX. IN MODELS 1-3, ONLY SHIFTS WERE USED; IN MODELS 4-6 SHIFTS + NOE'S WERE USED IN REFINEMENT. ; # _pdbx_nmr_refine.entry_id 1EKH _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'Paramagnetic Shifts and NOEs used in refinement. Other REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal NMRPipe 1.7 processing 'DeLaglio and Bax' 1 Sparky 3.0 'data analysis' 'Kneller and Goddard' 2 X-PLOR '3.0, 3.851' refinement 'Brunger (modified by Gochin and Tu)' 3 Felix 2.1 'data analysis' Biosym 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1GL O1 O N N 1 1GL C1 C N S 2 1GL C2 C N N 3 1GL C3 C N R 4 1GL O3 O N N 5 1GL C4 C N R 6 1GL O4 O N N 7 1GL CME C N N 8 1GL C5 C N R 9 1GL O5 O N N 10 1GL C6 C N N 11 1GL HO1 H N N 12 1GL H1 H N N 13 1GL H2 H N N 14 1GL H22 H N N 15 1GL H3 H N N 16 1GL HO3 H N N 17 1GL H4 H N N 18 1GL HM41 H N N 19 1GL HM42 H N N 20 1GL HM43 H N N 21 1GL H5 H N N 22 1GL H61 H N N 23 1GL H62 H N N 24 1GL H63 H N N 25 2GL O5 O N N 26 2GL C1 C N R 27 2GL C2 C N N 28 2GL C3 C N R 29 2GL O3 O N N 30 2GL C4 C N R 31 2GL O4 O N N 32 2GL CME C N N 33 2GL CO4 C N N 34 2GL OC4 O N N 35 2GL C5 C N R 36 2GL O1 O N N 37 2GL C6 C N N 38 2GL HO1 H N N 39 2GL H1 H N N 40 2GL H2 H N N 41 2GL H22 H N N 42 2GL H3 H N N 43 2GL HO3 H N N 44 2GL H4 H N N 45 2GL HM41 H N N 46 2GL HM42 H N N 47 2GL HM43 H N N 48 2GL H5 H N N 49 2GL H61 H N N 50 2GL H62 H N N 51 2GL H63 H N N 52 CO CO CO N N 53 CPH C1 C N N 54 CPH O1 O N N 55 CPH C2 C N S 56 CPH C3 C N R 57 CPH C4 C N N 58 CPH C5 C Y N 59 CPH C6 C Y N 60 CPH C7 C Y N 61 CPH C8 C Y N 62 CPH O8 O N N 63 CPH C9 C Y N 64 CPH O9 O N N 65 CPH "C1'" C N S 66 CPH "O1'" O N N 67 CPH C10 C Y N 68 CPH "C2'" C N N 69 CPH "O2'" O N N 70 CPH "C3'" C N S 71 CPH "O3'" O N N 72 CPH "C4'" C N R 73 CPH "O4'" O N N 74 CPH C4A C Y N 75 CPH "C5'" C N N 76 CPH C5A C Y N 77 CPH C8A C Y N 78 CPH C9A C Y N 79 CPH CC7 C N N 80 CPH O6 O N N 81 CPH O2 O N N 82 CPH CME C N N 83 CPH H2 H N N 84 CPH H3 H N N 85 CPH H4 H N N 86 CPH H4A H N N 87 CPH H5 H N N 88 CPH HO8 H N N 89 CPH HO9 H N N 90 CPH "H1'" H N N 91 CPH H10 H N N 92 CPH "H3'" H N N 93 CPH "HO3'" H N N 94 CPH "H4'" H N N 95 CPH "HO4'" H N N 96 CPH "H5'" H N N 97 CPH "H5'A" H N N 98 CPH "H5'B" H N N 99 CPH HC7 H N N 100 CPH HC7A H N N 101 CPH HC7B H N N 102 CPH HO6 H N N 103 CPH HO2 H N N 104 CPH HME H N N 105 CPH HMEA H N N 106 CPH HMEB H N N 107 DA OP3 O N N 108 DA P P N N 109 DA OP1 O N N 110 DA OP2 O N N 111 DA "O5'" O N N 112 DA "C5'" C N N 113 DA "C4'" C N R 114 DA "O4'" O N N 115 DA "C3'" C N S 116 DA "O3'" O N N 117 DA "C2'" C N N 118 DA "C1'" C N R 119 DA N9 N Y N 120 DA C8 C Y N 121 DA N7 N Y N 122 DA C5 C Y N 123 DA C6 C Y N 124 DA N6 N N N 125 DA N1 N Y N 126 DA C2 C Y N 127 DA N3 N Y N 128 DA C4 C Y N 129 DA HOP3 H N N 130 DA HOP2 H N N 131 DA "H5'" H N N 132 DA "H5''" H N N 133 DA "H4'" H N N 134 DA "H3'" H N N 135 DA "HO3'" H N N 136 DA "H2'" H N N 137 DA "H2''" H N N 138 DA "H1'" H N N 139 DA H8 H N N 140 DA H61 H N N 141 DA H62 H N N 142 DA H2 H N N 143 DC OP3 O N N 144 DC P P N N 145 DC OP1 O N N 146 DC OP2 O N N 147 DC "O5'" O N N 148 DC "C5'" C N N 149 DC "C4'" C N R 150 DC "O4'" O N N 151 DC "C3'" C N S 152 DC "O3'" O N N 153 DC "C2'" C N N 154 DC "C1'" C N R 155 DC N1 N N N 156 DC C2 C N N 157 DC O2 O N N 158 DC N3 N N N 159 DC C4 C N N 160 DC N4 N N N 161 DC C5 C N N 162 DC C6 C N N 163 DC HOP3 H N N 164 DC HOP2 H N N 165 DC "H5'" H N N 166 DC "H5''" H N N 167 DC "H4'" H N N 168 DC "H3'" H N N 169 DC "HO3'" H N N 170 DC "H2'" H N N 171 DC "H2''" H N N 172 DC "H1'" H N N 173 DC H41 H N N 174 DC H42 H N N 175 DC H5 H N N 176 DC H6 H N N 177 DDA C1 C N R 178 DDA C2 C N N 179 DDA C3 C N R 180 DDA C4 C N S 181 DDA C5 C N R 182 DDA C6 C N N 183 DDA O5 O N N 184 DDA O1 O N N 185 DDA O3 O N N 186 DDA O4 O N N 187 DDA H1 H N N 188 DDA H21 H N N 189 DDA H22 H N N 190 DDA H3 H N N 191 DDA H4 H N N 192 DDA H5 H N N 193 DDA H61 H N N 194 DDA H62 H N N 195 DDA H63 H N N 196 DDA HO1 H N N 197 DDA HO3 H N N 198 DDA HO4 H N N 199 DG OP3 O N N 200 DG P P N N 201 DG OP1 O N N 202 DG OP2 O N N 203 DG "O5'" O N N 204 DG "C5'" C N N 205 DG "C4'" C N R 206 DG "O4'" O N N 207 DG "C3'" C N S 208 DG "O3'" O N N 209 DG "C2'" C N N 210 DG "C1'" C N R 211 DG N9 N Y N 212 DG C8 C Y N 213 DG N7 N Y N 214 DG C5 C Y N 215 DG C6 C N N 216 DG O6 O N N 217 DG N1 N N N 218 DG C2 C N N 219 DG N2 N N N 220 DG N3 N N N 221 DG C4 C Y N 222 DG HOP3 H N N 223 DG HOP2 H N N 224 DG "H5'" H N N 225 DG "H5''" H N N 226 DG "H4'" H N N 227 DG "H3'" H N N 228 DG "HO3'" H N N 229 DG "H2'" H N N 230 DG "H2''" H N N 231 DG "H1'" H N N 232 DG H8 H N N 233 DG H1 H N N 234 DG H21 H N N 235 DG H22 H N N 236 DT OP3 O N N 237 DT P P N N 238 DT OP1 O N N 239 DT OP2 O N N 240 DT "O5'" O N N 241 DT "C5'" C N N 242 DT "C4'" C N R 243 DT "O4'" O N N 244 DT "C3'" C N S 245 DT "O3'" O N N 246 DT "C2'" C N N 247 DT "C1'" C N R 248 DT N1 N N N 249 DT C2 C N N 250 DT O2 O N N 251 DT N3 N N N 252 DT C4 C N N 253 DT O4 O N N 254 DT C5 C N N 255 DT C7 C N N 256 DT C6 C N N 257 DT HOP3 H N N 258 DT HOP2 H N N 259 DT "H5'" H N N 260 DT "H5''" H N N 261 DT "H4'" H N N 262 DT "H3'" H N N 263 DT "HO3'" H N N 264 DT "H2'" H N N 265 DT "H2''" H N N 266 DT "H1'" H N N 267 DT H3 H N N 268 DT H71 H N N 269 DT H72 H N N 270 DT H73 H N N 271 DT H6 H N N 272 ERI O1 O N N 273 ERI C1 C N R 274 ERI C2 C N N 275 ERI C3 C N S 276 ERI O3 O N N 277 ERI CC3 C N N 278 ERI C4 C N S 279 ERI O4 O N N 280 ERI CME C N N 281 ERI CO4 C N N 282 ERI OC4 O N N 283 ERI C5 C N S 284 ERI O5 O N N 285 ERI C6 C N N 286 ERI HO1 H N N 287 ERI H1 H N N 288 ERI H21 H N N 289 ERI H22 H N N 290 ERI HO3 H N N 291 ERI H31 H N N 292 ERI H32 H N N 293 ERI H33 H N N 294 ERI H4 H N N 295 ERI H41 H N N 296 ERI H42 H N N 297 ERI H43 H N N 298 ERI H5 H N N 299 ERI H61 H N N 300 ERI H62 H N N 301 ERI H63 H N N 302 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1GL O1 C1 sing N N 1 1GL O1 HO1 sing N N 2 1GL C1 C2 sing N N 3 1GL C1 O5 sing N N 4 1GL C1 H1 sing N N 5 1GL C2 C3 sing N N 6 1GL C2 H2 sing N N 7 1GL C2 H22 sing N N 8 1GL C3 O3 sing N N 9 1GL C3 C4 sing N N 10 1GL C3 H3 sing N N 11 1GL O3 HO3 sing N N 12 1GL C4 O4 sing N N 13 1GL C4 C5 sing N N 14 1GL C4 H4 sing N N 15 1GL O4 CME sing N N 16 1GL CME HM41 sing N N 17 1GL CME HM42 sing N N 18 1GL CME HM43 sing N N 19 1GL C5 O5 sing N N 20 1GL C5 C6 sing N N 21 1GL C5 H5 sing N N 22 1GL C6 H61 sing N N 23 1GL C6 H62 sing N N 24 1GL C6 H63 sing N N 25 2GL O5 C1 sing N N 26 2GL O1 HO1 sing N N 27 2GL C1 C2 sing N N 28 2GL C1 O1 sing N N 29 2GL C1 H1 sing N N 30 2GL C2 C3 sing N N 31 2GL C2 H2 sing N N 32 2GL C2 H22 sing N N 33 2GL C3 O3 sing N N 34 2GL C3 C4 sing N N 35 2GL C3 H3 sing N N 36 2GL O3 HO3 sing N N 37 2GL C4 O4 sing N N 38 2GL C4 C5 sing N N 39 2GL C4 H4 sing N N 40 2GL O4 CO4 sing N N 41 2GL CME CO4 sing N N 42 2GL CME HM41 sing N N 43 2GL CME HM42 sing N N 44 2GL CME HM43 sing N N 45 2GL CO4 OC4 doub N N 46 2GL C5 O5 sing N N 47 2GL C5 C6 sing N N 48 2GL C5 H5 sing N N 49 2GL C6 H61 sing N N 50 2GL C6 H62 sing N N 51 2GL C6 H63 sing N N 52 CPH O1 C1 doub N N 53 CPH C9A C1 sing N N 54 CPH C1 C2 sing N N 55 CPH C2 O2 sing N N 56 CPH C2 C3 sing N N 57 CPH C2 H2 sing N N 58 CPH C3 C4 sing N N 59 CPH C3 "C1'" sing N N 60 CPH C3 H3 sing N N 61 CPH C4A C4 sing N N 62 CPH C4 H4 sing N N 63 CPH C4 H4A sing N N 64 CPH C6 C5 doub Y N 65 CPH C5 C5A sing Y N 66 CPH C5 H5 sing N N 67 CPH C7 C6 sing Y N 68 CPH O6 C6 sing N N 69 CPH CC7 C7 sing N N 70 CPH C7 C8 doub Y N 71 CPH O8 C8 sing N N 72 CPH C8 C8A sing Y N 73 CPH O8 HO8 sing N N 74 CPH O9 C9 sing N N 75 CPH C8A C9 doub Y N 76 CPH C9 C9A sing Y N 77 CPH O9 HO9 sing N N 78 CPH "C2'" "C1'" sing N N 79 CPH "C1'" "O1'" sing N N 80 CPH "C1'" "H1'" sing N N 81 CPH "O1'" CME sing N N 82 CPH C5A C10 doub Y N 83 CPH C10 C4A sing Y N 84 CPH C10 H10 sing N N 85 CPH "O2'" "C2'" doub N N 86 CPH "C2'" "C3'" sing N N 87 CPH "O3'" "C3'" sing N N 88 CPH "C3'" "C4'" sing N N 89 CPH "C3'" "H3'" sing N N 90 CPH "O3'" "HO3'" sing N N 91 CPH "O4'" "C4'" sing N N 92 CPH "C4'" "C5'" sing N N 93 CPH "C4'" "H4'" sing N N 94 CPH "O4'" "HO4'" sing N N 95 CPH C9A C4A doub Y N 96 CPH "C5'" "H5'" sing N N 97 CPH "C5'" "H5'A" sing N N 98 CPH "C5'" "H5'B" sing N N 99 CPH C8A C5A sing Y N 100 CPH CC7 HC7 sing N N 101 CPH CC7 HC7A sing N N 102 CPH CC7 HC7B sing N N 103 CPH O6 HO6 sing N N 104 CPH O2 HO2 sing N N 105 CPH CME HME sing N N 106 CPH CME HMEA sing N N 107 CPH CME HMEB sing N N 108 DA OP3 P sing N N 109 DA OP3 HOP3 sing N N 110 DA P OP1 doub N N 111 DA P OP2 sing N N 112 DA P "O5'" sing N N 113 DA OP2 HOP2 sing N N 114 DA "O5'" "C5'" sing N N 115 DA "C5'" "C4'" sing N N 116 DA "C5'" "H5'" sing N N 117 DA "C5'" "H5''" sing N N 118 DA "C4'" "O4'" sing N N 119 DA "C4'" "C3'" sing N N 120 DA "C4'" "H4'" sing N N 121 DA "O4'" "C1'" sing N N 122 DA "C3'" "O3'" sing N N 123 DA "C3'" "C2'" sing N N 124 DA "C3'" "H3'" sing N N 125 DA "O3'" "HO3'" sing N N 126 DA "C2'" "C1'" sing N N 127 DA "C2'" "H2'" sing N N 128 DA "C2'" "H2''" sing N N 129 DA "C1'" N9 sing N N 130 DA "C1'" "H1'" sing N N 131 DA N9 C8 sing Y N 132 DA N9 C4 sing Y N 133 DA C8 N7 doub Y N 134 DA C8 H8 sing N N 135 DA N7 C5 sing Y N 136 DA C5 C6 sing Y N 137 DA C5 C4 doub Y N 138 DA C6 N6 sing N N 139 DA C6 N1 doub Y N 140 DA N6 H61 sing N N 141 DA N6 H62 sing N N 142 DA N1 C2 sing Y N 143 DA C2 N3 doub Y N 144 DA C2 H2 sing N N 145 DA N3 C4 sing Y N 146 DC OP3 P sing N N 147 DC OP3 HOP3 sing N N 148 DC P OP1 doub N N 149 DC P OP2 sing N N 150 DC P "O5'" sing N N 151 DC OP2 HOP2 sing N N 152 DC "O5'" "C5'" sing N N 153 DC "C5'" "C4'" sing N N 154 DC "C5'" "H5'" sing N N 155 DC "C5'" "H5''" sing N N 156 DC "C4'" "O4'" sing N N 157 DC "C4'" "C3'" sing N N 158 DC "C4'" "H4'" sing N N 159 DC "O4'" "C1'" sing N N 160 DC "C3'" "O3'" sing N N 161 DC "C3'" "C2'" sing N N 162 DC "C3'" "H3'" sing N N 163 DC "O3'" "HO3'" sing N N 164 DC "C2'" "C1'" sing N N 165 DC "C2'" "H2'" sing N N 166 DC "C2'" "H2''" sing N N 167 DC "C1'" N1 sing N N 168 DC "C1'" "H1'" sing N N 169 DC N1 C2 sing N N 170 DC N1 C6 sing N N 171 DC C2 O2 doub N N 172 DC C2 N3 sing N N 173 DC N3 C4 doub N N 174 DC C4 N4 sing N N 175 DC C4 C5 sing N N 176 DC N4 H41 sing N N 177 DC N4 H42 sing N N 178 DC C5 C6 doub N N 179 DC C5 H5 sing N N 180 DC C6 H6 sing N N 181 DDA C1 C2 sing N N 182 DDA C1 O5 sing N N 183 DDA C1 O1 sing N N 184 DDA C1 H1 sing N N 185 DDA C2 C3 sing N N 186 DDA C2 H21 sing N N 187 DDA C2 H22 sing N N 188 DDA C3 C4 sing N N 189 DDA C3 O3 sing N N 190 DDA C3 H3 sing N N 191 DDA C4 C5 sing N N 192 DDA C4 O4 sing N N 193 DDA C4 H4 sing N N 194 DDA C5 C6 sing N N 195 DDA C5 O5 sing N N 196 DDA C5 H5 sing N N 197 DDA C6 H61 sing N N 198 DDA C6 H62 sing N N 199 DDA C6 H63 sing N N 200 DDA O1 HO1 sing N N 201 DDA O3 HO3 sing N N 202 DDA O4 HO4 sing N N 203 DG OP3 P sing N N 204 DG OP3 HOP3 sing N N 205 DG P OP1 doub N N 206 DG P OP2 sing N N 207 DG P "O5'" sing N N 208 DG OP2 HOP2 sing N N 209 DG "O5'" "C5'" sing N N 210 DG "C5'" "C4'" sing N N 211 DG "C5'" "H5'" sing N N 212 DG "C5'" "H5''" sing N N 213 DG "C4'" "O4'" sing N N 214 DG "C4'" "C3'" sing N N 215 DG "C4'" "H4'" sing N N 216 DG "O4'" "C1'" sing N N 217 DG "C3'" "O3'" sing N N 218 DG "C3'" "C2'" sing N N 219 DG "C3'" "H3'" sing N N 220 DG "O3'" "HO3'" sing N N 221 DG "C2'" "C1'" sing N N 222 DG "C2'" "H2'" sing N N 223 DG "C2'" "H2''" sing N N 224 DG "C1'" N9 sing N N 225 DG "C1'" "H1'" sing N N 226 DG N9 C8 sing Y N 227 DG N9 C4 sing Y N 228 DG C8 N7 doub Y N 229 DG C8 H8 sing N N 230 DG N7 C5 sing Y N 231 DG C5 C6 sing N N 232 DG C5 C4 doub Y N 233 DG C6 O6 doub N N 234 DG C6 N1 sing N N 235 DG N1 C2 sing N N 236 DG N1 H1 sing N N 237 DG C2 N2 sing N N 238 DG C2 N3 doub N N 239 DG N2 H21 sing N N 240 DG N2 H22 sing N N 241 DG N3 C4 sing N N 242 DT OP3 P sing N N 243 DT OP3 HOP3 sing N N 244 DT P OP1 doub N N 245 DT P OP2 sing N N 246 DT P "O5'" sing N N 247 DT OP2 HOP2 sing N N 248 DT "O5'" "C5'" sing N N 249 DT "C5'" "C4'" sing N N 250 DT "C5'" "H5'" sing N N 251 DT "C5'" "H5''" sing N N 252 DT "C4'" "O4'" sing N N 253 DT "C4'" "C3'" sing N N 254 DT "C4'" "H4'" sing N N 255 DT "O4'" "C1'" sing N N 256 DT "C3'" "O3'" sing N N 257 DT "C3'" "C2'" sing N N 258 DT "C3'" "H3'" sing N N 259 DT "O3'" "HO3'" sing N N 260 DT "C2'" "C1'" sing N N 261 DT "C2'" "H2'" sing N N 262 DT "C2'" "H2''" sing N N 263 DT "C1'" N1 sing N N 264 DT "C1'" "H1'" sing N N 265 DT N1 C2 sing N N 266 DT N1 C6 sing N N 267 DT C2 O2 doub N N 268 DT C2 N3 sing N N 269 DT N3 C4 sing N N 270 DT N3 H3 sing N N 271 DT C4 O4 doub N N 272 DT C4 C5 sing N N 273 DT C5 C7 sing N N 274 DT C5 C6 doub N N 275 DT C7 H71 sing N N 276 DT C7 H72 sing N N 277 DT C7 H73 sing N N 278 DT C6 H6 sing N N 279 ERI O1 C1 sing N N 280 ERI O1 HO1 sing N N 281 ERI C1 C2 sing N N 282 ERI C1 O5 sing N N 283 ERI C1 H1 sing N N 284 ERI C2 C3 sing N N 285 ERI C2 H21 sing N N 286 ERI C2 H22 sing N N 287 ERI C3 O3 sing N N 288 ERI C3 CC3 sing N N 289 ERI C3 C4 sing N N 290 ERI O3 HO3 sing N N 291 ERI CC3 H31 sing N N 292 ERI CC3 H32 sing N N 293 ERI CC3 H33 sing N N 294 ERI C4 O4 sing N N 295 ERI C4 C5 sing N N 296 ERI C4 H4 sing N N 297 ERI O4 CO4 sing N N 298 ERI CME CO4 sing N N 299 ERI CME H41 sing N N 300 ERI CME H42 sing N N 301 ERI CME H43 sing N N 302 ERI CO4 OC4 doub N N 303 ERI C5 O5 sing N N 304 ERI C5 C6 sing N N 305 ERI C5 H5 sing N N 306 ERI C6 H61 sing N N 307 ERI C6 H62 sing N N 308 ERI C6 H63 sing N N 309 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1EKH 'double helix' 1EKH 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 8 1_555 0.129 -0.092 0.166 37.450 1.800 0.780 1 A_DT1:DA18_B A 1 ? B 18 ? 20 1 1 A DT 2 1_555 B DA 7 1_555 -0.124 -0.037 -0.528 5.331 -12.926 -3.144 2 A_DT2:DA17_B A 2 ? B 17 ? 20 1 1 A DG 3 1_555 B DC 6 1_555 -0.498 -0.174 0.043 -5.698 -5.686 0.814 3 A_DG3:DC16_B A 3 ? B 16 ? 19 1 1 A DG 4 1_555 B DC 5 1_555 0.074 -0.256 0.454 -2.005 -24.815 -4.783 4 A_DG4:DC15_B A 4 ? B 15 ? 19 1 1 A DC 5 1_555 B DG 4 1_555 -0.195 -0.157 0.374 5.560 -23.428 -3.867 5 A_DC5:DG14_B A 5 ? B 14 ? 19 1 1 A DC 6 1_555 B DG 3 1_555 0.303 -0.139 -0.185 7.791 -5.754 0.416 6 A_DC6:DG13_B A 6 ? B 13 ? 19 1 1 A DA 7 1_555 B DT 2 1_555 0.252 -0.063 -0.273 4.611 -13.027 -2.372 7 A_DA7:DT12_B A 7 ? B 12 ? 20 1 1 A DA 8 1_555 B DT 1 1_555 -0.156 -0.178 0.597 -41.202 4.684 8.589 8 A_DA8:DT11_B A 8 ? B 11 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 8 1_555 A DT 2 1_555 B DA 7 1_555 0.301 -0.937 4.260 14.507 26.401 32.625 -4.348 1.303 2.737 38.364 -21.081 44.126 1 AA_DT1DT2:DA17DA18_BB A 1 ? B 18 ? A 2 ? B 17 ? 1 A DT 2 1_555 B DA 7 1_555 A DG 3 1_555 B DC 6 1_555 0.706 -0.824 3.525 -5.323 13.770 28.828 -3.941 -2.219 2.696 25.645 9.912 32.317 2 AA_DT2DG3:DC16DA17_BB A 2 ? B 17 ? A 3 ? B 16 ? 1 A DG 3 1_555 B DC 6 1_555 A DG 4 1_555 B DC 5 1_555 1.091 -1.536 3.395 4.976 1.106 31.008 -3.055 -1.030 3.468 2.051 -9.229 31.414 3 AA_DG3DG4:DC15DC16_BB A 3 ? B 16 ? A 4 ? B 15 ? 1 A DG 4 1_555 B DC 5 1_555 A DC 5 1_555 B DG 4 1_555 0.029 -2.291 2.830 -0.093 2.297 29.052 -4.975 -0.074 2.645 4.569 0.185 29.141 4 AA_DG4DC5:DG14DC15_BB A 4 ? B 15 ? A 5 ? B 14 ? 1 A DC 5 1_555 B DG 4 1_555 A DC 6 1_555 B DG 3 1_555 -0.868 -1.791 3.395 -5.089 -0.988 31.094 -3.101 0.585 3.542 -1.827 9.411 31.513 5 AA_DC5DC6:DG13DG14_BB A 5 ? B 14 ? A 6 ? B 13 ? 1 A DC 6 1_555 B DG 3 1_555 A DA 7 1_555 B DT 2 1_555 -0.706 -0.448 3.719 7.418 8.576 29.072 -2.625 2.862 3.190 16.323 -14.119 31.161 6 AA_DC6DA7:DT12DG13_BB A 6 ? B 13 ? A 7 ? B 12 ? 1 A DA 7 1_555 B DT 2 1_555 A DA 8 1_555 B DT 1 1_555 -0.198 -0.092 4.596 -17.452 30.659 36.472 -3.293 -1.581 3.395 39.505 22.488 50.320 7 AA_DA7DA8:DT11DT12_BB A 7 ? B 12 ? A 8 ? B 11 ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 2GL 1 n 2 1GL 2 n 3 DDA 1 n 3 DDA 2 n 3 ERI 3 n # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model OMEGA500 _pdbx_nmr_spectrometer.manufacturer GE _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.type ? # _atom_sites.entry_id 1EKH _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO H N O P # loop_