data_1EWM # _entry.id 1EWM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1EWM RCSB RCSB010967 WWPDB D_1000010967 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1aim 'same protein, ZYA inhibitor' unspecified PDB 2aim 'same protein, ZRA inhibitor' unspecified PDB 1ewl 'same protein, WRR-99 inhibitor' unspecified PDB 1ewo 'same protein, WRR-204 inhibitor' unspecified PDB 1ewp 'same protein, MOR-LEU-HPQ inhibitor' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1EWM _pdbx_database_status.recvd_initial_deposition_date 2000-04-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Brinen, L.S.' 1 'Gillmor, S.A.' 2 'Fletterick, R.J.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal Structure of Cruzain bound to WRR-112' 'To be Published' ? ? ? ? ? ? ? 0353 ? ? ? 1 'Chapter 3: X-ray Structures of Complexes of Cruzain with Designed Covalent Inhibitors' 'Enzyme-ligand Interactions, Inhibition and Specificity' ? 50 80 1998 ? ? ? ? 'University of California, San Francisco (THESIS)' ? ? 2 'Structural Determinants of Specificity in the Cysteine Protease Cruzain' 'Protein Sci.' 6 1603 1611 1997 PRCIEI US 0961-8368 0795 ? ? ? 3 ;The Crystal Structure of Cruzain: a Therapeutic Target for Chagas' Disease ; J.Mol.Biol. 247 251 259 1995 JMOBAK UK 0022-2836 0070 ? ? 10.1006/jmbi.1994.0137 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Brinen, L.S.' 1 primary 'Gillmor, S.A.' 2 primary 'Fletterick, R.J.' 3 1 'Gillmor, S.A.' 4 2 'Gillmor, S.A.' 5 2 'Craik, C.S.' 6 2 'Fletterick, R.J.' 7 3 'McGrath, M.E.' 8 3 'Eakin, A.E.' 9 3 'Engel, J.C.' 10 3 'McKerrow, J.H.' 11 3 'Craik, C.S.' 12 3 'Fletterick, R.J.' 13 # _cell.entry_id 1EWM _cell.length_a 43.258 _cell.length_b 51.700 _cell.length_c 45.271 _cell.angle_alpha 90.00 _cell.angle_beta 115.20 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1EWM _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man CRUZAIN 22715.133 1 3.4.22.- ? 'CATALYTIC DOMAIN' ? 2 non-polymer syn 'N-[3-CARBOXY-2-HYDROXY-PROPIONYL]-L-HOMOPHENYLALANYL-AMINO-2-METHYLBUTANE' 364.436 1 ? ? ? ? 3 water nat water 18.015 57 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'cruzipain, cruzaine' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;APAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENN GAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQL DHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVVG ; _entity_poly.pdbx_seq_one_letter_code_can ;APAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENN GAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQL DHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVVG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 PRO n 1 3 ALA n 1 4 ALA n 1 5 VAL n 1 6 ASP n 1 7 TRP n 1 8 ARG n 1 9 ALA n 1 10 ARG n 1 11 GLY n 1 12 ALA n 1 13 VAL n 1 14 THR n 1 15 ALA n 1 16 VAL n 1 17 LYS n 1 18 ASP n 1 19 GLN n 1 20 GLY n 1 21 GLN n 1 22 CYS n 1 23 GLY n 1 24 SER n 1 25 CYS n 1 26 TRP n 1 27 ALA n 1 28 PHE n 1 29 SER n 1 30 ALA n 1 31 ILE n 1 32 GLY n 1 33 ASN n 1 34 VAL n 1 35 GLU n 1 36 CYS n 1 37 GLN n 1 38 TRP n 1 39 PHE n 1 40 LEU n 1 41 ALA n 1 42 GLY n 1 43 HIS n 1 44 PRO n 1 45 LEU n 1 46 THR n 1 47 ASN n 1 48 LEU n 1 49 SER n 1 50 GLU n 1 51 GLN n 1 52 MET n 1 53 LEU n 1 54 VAL n 1 55 SER n 1 56 CYS n 1 57 ASP n 1 58 LYS n 1 59 THR n 1 60 ASP n 1 61 SER n 1 62 GLY n 1 63 CYS n 1 64 SER n 1 65 GLY n 1 66 GLY n 1 67 LEU n 1 68 MET n 1 69 ASN n 1 70 ASN n 1 71 ALA n 1 72 PHE n 1 73 GLU n 1 74 TRP n 1 75 ILE n 1 76 VAL n 1 77 GLN n 1 78 GLU n 1 79 ASN n 1 80 ASN n 1 81 GLY n 1 82 ALA n 1 83 VAL n 1 84 TYR n 1 85 THR n 1 86 GLU n 1 87 ASP n 1 88 SER n 1 89 TYR n 1 90 PRO n 1 91 TYR n 1 92 ALA n 1 93 SER n 1 94 GLY n 1 95 GLU n 1 96 GLY n 1 97 ILE n 1 98 SER n 1 99 PRO n 1 100 PRO n 1 101 CYS n 1 102 THR n 1 103 THR n 1 104 SER n 1 105 GLY n 1 106 HIS n 1 107 THR n 1 108 VAL n 1 109 GLY n 1 110 ALA n 1 111 THR n 1 112 ILE n 1 113 THR n 1 114 GLY n 1 115 HIS n 1 116 VAL n 1 117 GLU n 1 118 LEU n 1 119 PRO n 1 120 GLN n 1 121 ASP n 1 122 GLU n 1 123 ALA n 1 124 GLN n 1 125 ILE n 1 126 ALA n 1 127 ALA n 1 128 TRP n 1 129 LEU n 1 130 ALA n 1 131 VAL n 1 132 ASN n 1 133 GLY n 1 134 PRO n 1 135 VAL n 1 136 ALA n 1 137 VAL n 1 138 ALA n 1 139 VAL n 1 140 ASP n 1 141 ALA n 1 142 SER n 1 143 SER n 1 144 TRP n 1 145 MET n 1 146 THR n 1 147 TYR n 1 148 THR n 1 149 GLY n 1 150 GLY n 1 151 VAL n 1 152 MET n 1 153 THR n 1 154 SER n 1 155 CYS n 1 156 VAL n 1 157 SER n 1 158 GLU n 1 159 GLN n 1 160 LEU n 1 161 ASP n 1 162 HIS n 1 163 GLY n 1 164 VAL n 1 165 LEU n 1 166 LEU n 1 167 VAL n 1 168 GLY n 1 169 TYR n 1 170 ASN n 1 171 ASP n 1 172 SER n 1 173 ALA n 1 174 ALA n 1 175 VAL n 1 176 PRO n 1 177 TYR n 1 178 TRP n 1 179 ILE n 1 180 ILE n 1 181 LYS n 1 182 ASN n 1 183 SER n 1 184 TRP n 1 185 THR n 1 186 THR n 1 187 GLN n 1 188 TRP n 1 189 GLY n 1 190 GLU n 1 191 GLU n 1 192 GLY n 1 193 TYR n 1 194 ILE n 1 195 ARG n 1 196 ILE n 1 197 ALA n 1 198 LYS n 1 199 GLY n 1 200 SER n 1 201 ASN n 1 202 GLN n 1 203 CYS n 1 204 LEU n 1 205 VAL n 1 206 LYS n 1 207 GLU n 1 208 GLU n 1 209 ALA n 1 210 SER n 1 211 SER n 1 212 ALA n 1 213 VAL n 1 214 VAL n 1 215 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Trypanosoma _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Trypanosoma cruzi' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 5693 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain DH5ALPHA _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name CHEY _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_code CYSP_TRYCR _struct_ref.db_name UNP _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P25779 _struct_ref.pdbx_align_begin 123 _struct_ref.pdbx_seq_one_letter_code ;APAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENN GAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQL DHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVVG ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1EWM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 215 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P25779 _struct_ref_seq.db_align_beg 123 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 337 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 212 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RL2 peptide-like . 'N-[3-CARBOXY-2-HYDROXY-PROPIONYL]-L-HOMOPHENYLALANYL-AMINO-2-METHYLBUTANE' WRR-112 'C19 H28 N2 O5' 364.436 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1EWM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 38.98 _exptl_crystal.density_Matthews 2.02 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.9M NaCitrate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1997-05-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1EWM _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.0 _reflns.number_obs 11831 _reflns.number_all 11831 _reflns.percent_possible_obs 95.8 _reflns.pdbx_Rmerge_I_obs 0.094 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 6.0 _reflns.B_iso_Wilson_estimate 5.5 _reflns.pdbx_redundancy 2.75 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 91.3 _reflns_shell.Rmerge_I_obs 0.167 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 2.8 _reflns_shell.number_unique_all 1139 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1EWM _refine.ls_number_reflns_obs 11819 _refine.ls_number_reflns_all 11819 _refine.pdbx_ls_sigma_I -3.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 10000000.00 _refine.pdbx_data_cutoff_low_absF 0.00 _refine.ls_d_res_low 25.00 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 95.8 _refine.ls_R_factor_obs 0.173 _refine.ls_R_factor_all 0.18 _refine.ls_R_factor_R_work 0.173 _refine.ls_R_factor_R_free 0.206 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 570 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 10.9 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'toph19 and param19' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_ML ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1EWM _refine_analyze.Luzzati_coordinate_error_obs 0.19 _refine_analyze.Luzzati_sigma_a_obs 0.16 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.24 _refine_analyze.Luzzati_sigma_a_free 0.19 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1593 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 57 _refine_hist.number_atoms_total 1676 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 25.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 2.4 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 25.9 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 0.94 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 1790 _refine_ls_shell.R_factor_R_work 0.209 _refine_ls_shell.percent_reflns_obs 92.5 _refine_ls_shell.R_factor_R_free 0.234 _refine_ls_shell.R_factor_R_free_error 0.026 _refine_ls_shell.percent_reflns_R_free 4.4 _refine_ls_shell.number_reflns_R_free 82 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARAM19SG.PRO TOHP19SG2.PRO 'X-RAY DIFFRACTION' 2 PARAM19.SOL TOPH19.SOL 'X-RAY DIFFRACTION' 3 ? INHIB112.TPX 'X-RAY DIFFRACTION' 4 ? EPOX.TPX 'X-RAY DIFFRACTION' # _struct.entry_id 1EWM _struct.title 'THE CYSTEINE PROTEASE CRUZAIN BOUND TO WRR-112' _struct.pdbx_descriptor 'CRUZAIN (E.C.3.4.22.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1EWM _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'cruzain, cruzipain, drug design, covalent inhibitor, cysteine protease, HYDROLASE-HYDROLASE INHIBITOR COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details 'the biological assembly is the monomer found in the asymmetric unit' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 8 ? GLY A 11 ? ARG A 8 GLY A 11 5 ? 4 HELX_P HELX_P2 2 SER A 24 ? ALA A 41 ? SER A 24 ALA A 41 1 ? 18 HELX_P HELX_P3 3 SER A 49 ? ASP A 57 ? SER A 49 ASP A 57 1 ? 9 HELX_P HELX_P4 4 SER A 61 ? GLY A 65 ? SER A 61 GLY A 65 5 ? 5 HELX_P HELX_P5 6 ASP A 121 ? GLY A 133 ? ASP A 116 GLY A 128 1 ? 13 HELX_P HELX_P6 7 SER A 143 ? TYR A 147 ? SER A 140 TYR A 144 5 ? 5 HELX_P HELX_P7 8 ASN A 201 ? VAL A 205 ? ASN A 198 VAL A 202 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 63 SG ? ? A CYS 22 A CYS 63 1_555 ? ? ? ? ? ? ? 2.035 ? disulf2 disulf ? ? A CYS 56 SG ? ? ? 1_555 A CYS 101 SG ? ? A CYS 56 A CYS 95 1_555 ? ? ? ? ? ? ? 2.017 ? disulf3 disulf ? ? A CYS 155 SG ? ? ? 1_555 A CYS 203 SG ? ? A CYS 153 A CYS 200 1_555 ? ? ? ? ? ? ? 2.025 ? covale1 covale ? ? A CYS 25 SG ? ? ? 1_555 B RL2 . C2 ? ? A CYS 25 A RL2 280 1_555 ? ? ? ? ? ? ? 1.827 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 135 ? VAL A 139 ? VAL A 130 VAL A 134 A 2 HIS A 162 ? ASN A 170 ? HIS A 159 ASN A 167 A 3 ALA A 4 ? ASP A 6 ? ALA A 4 ASP A 6 B 1 VAL A 135 ? VAL A 139 ? VAL A 130 VAL A 134 B 2 HIS A 162 ? ASN A 170 ? HIS A 159 ASN A 167 B 3 TYR A 177 ? LYS A 181 ? TYR A 170 LYS A 174 B 4 TYR A 193 ? ALA A 197 ? TYR A 186 ALA A 190 B 5 VAL A 151 ? MET A 152 ? VAL A 148 MET A 149 C 1 ALA A 82 ? TYR A 84 ? ALA A 79 TYR A 81 C 2 VAL A 108 ? THR A 111 ? VAL A 102 THR A 106 D 1 GLY A 114 ? GLU A 117 ? GLY A 109 GLU A 112 D 2 SER A 210 ? VAL A 213 ? SER A 207 VAL A 210 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 139 ? N VAL A 134 O HIS A 162 ? O HIS A 159 A 2 3 N TYR A 169 ? N TYR A 166 O VAL A 5 ? O VAL A 5 B 1 2 N VAL A 139 ? N VAL A 134 O HIS A 162 ? O HIS A 159 B 2 3 N ASN A 170 ? N ASN A 167 O TYR A 177 ? O TYR A 170 B 3 4 N ILE A 180 ? N ILE A 173 O ILE A 194 ? O ILE A 187 B 4 5 N ALA A 197 ? N ALA A 190 O MET A 152 ? O MET A 149 C 1 2 O VAL A 83 ? O VAL A 80 N GLY A 109 ? N GLY A 103 D 1 2 N VAL A 116 ? N VAL A 111 O SER A 211 ? O SER A 208 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 11 _struct_site.details 'BINDING SITE FOR RESIDUE RL2 A 280' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 GLN A 19 ? GLN A 19 . ? 1_555 ? 2 AC1 11 GLY A 23 ? GLY A 23 . ? 1_555 ? 3 AC1 11 SER A 24 ? SER A 24 . ? 1_555 ? 4 AC1 11 CYS A 25 ? CYS A 25 . ? 1_555 ? 5 AC1 11 TRP A 26 ? TRP A 26 . ? 1_555 ? 6 AC1 11 SER A 61 ? SER A 61 . ? 1_555 ? 7 AC1 11 GLY A 65 ? GLY A 65 . ? 1_555 ? 8 AC1 11 GLY A 66 ? GLY A 66 . ? 1_555 ? 9 AC1 11 MET A 68 ? MET A 68 . ? 1_555 ? 10 AC1 11 ASP A 161 ? ASP A 158 . ? 1_555 ? 11 AC1 11 HIS A 162 ? HIS A 159 . ? 1_555 ? # _database_PDB_matrix.entry_id 1EWM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1EWM _atom_sites.fract_transf_matrix[1][1] 0.023117 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.010877 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019342 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024412 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 TRP 7 7 7 TRP TRP A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 GLN 21 21 21 GLN GLN A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 CYS 25 25 25 CYS CYS A . n A 1 26 TRP 26 26 26 TRP TRP A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 CYS 36 36 36 CYS CYS A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 TRP 38 38 38 TRP TRP A . n A 1 39 PHE 39 39 39 PHE PHE A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 HIS 43 43 43 HIS HIS A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 MET 52 52 52 MET MET A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 CYS 56 56 56 CYS CYS A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 THR 59 59 59 THR THR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 CYS 63 63 63 CYS CYS A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 MET 68 68 68 MET MET A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 TRP 74 74 74 TRP TRP A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 GLN 77 77 77 GLN GLN A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 ASN 79 78 78 ASN ASN A A n A 1 80 ASN 80 78 78 ASN ASN A B n A 1 81 GLY 81 78 78 GLY GLY A C n A 1 82 ALA 82 79 79 ALA ALA A . n A 1 83 VAL 83 80 80 VAL VAL A . n A 1 84 TYR 84 81 81 TYR TYR A . n A 1 85 THR 85 82 82 THR THR A . n A 1 86 GLU 86 83 83 GLU GLU A . n A 1 87 ASP 87 84 84 ASP ASP A . n A 1 88 SER 88 85 85 SER SER A . n A 1 89 TYR 89 86 86 TYR TYR A . n A 1 90 PRO 90 87 87 PRO PRO A . n A 1 91 TYR 91 88 88 TYR TYR A . n A 1 92 ALA 92 89 89 ALA ALA A . n A 1 93 SER 93 89 89 SER SER A A n A 1 94 GLY 94 89 89 GLY GLY A B n A 1 95 GLU 95 89 89 GLU GLU A C n A 1 96 GLY 96 90 90 GLY GLY A . n A 1 97 ILE 97 91 91 ILE ILE A . n A 1 98 SER 98 92 92 SER SER A . n A 1 99 PRO 99 93 93 PRO PRO A . n A 1 100 PRO 100 94 94 PRO PRO A . n A 1 101 CYS 101 95 95 CYS CYS A . n A 1 102 THR 102 96 96 THR THR A . n A 1 103 THR 103 97 97 THR THR A . n A 1 104 SER 104 98 98 SER SER A . n A 1 105 GLY 105 99 99 GLY GLY A . n A 1 106 HIS 106 100 100 HIS HIS A . n A 1 107 THR 107 101 101 THR THR A . n A 1 108 VAL 108 102 102 VAL VAL A . n A 1 109 GLY 109 103 103 GLY GLY A . n A 1 110 ALA 110 105 105 ALA ALA A . n A 1 111 THR 111 106 106 THR THR A . n A 1 112 ILE 112 107 107 ILE ILE A . n A 1 113 THR 113 108 108 THR THR A . n A 1 114 GLY 114 109 109 GLY GLY A . n A 1 115 HIS 115 110 110 HIS HIS A . n A 1 116 VAL 116 111 111 VAL VAL A . n A 1 117 GLU 117 112 112 GLU GLU A . n A 1 118 LEU 118 113 113 LEU LEU A . n A 1 119 PRO 119 114 114 PRO PRO A . n A 1 120 GLN 120 115 115 GLN GLN A . n A 1 121 ASP 121 116 116 ASP ASP A . n A 1 122 GLU 122 117 117 GLU GLU A . n A 1 123 ALA 123 118 118 ALA ALA A . n A 1 124 GLN 124 119 119 GLN GLN A . n A 1 125 ILE 125 120 120 ILE ILE A . n A 1 126 ALA 126 121 121 ALA ALA A . n A 1 127 ALA 127 122 122 ALA ALA A . n A 1 128 TRP 128 123 123 TRP TRP A . n A 1 129 LEU 129 124 124 LEU LEU A . n A 1 130 ALA 130 125 125 ALA ALA A . n A 1 131 VAL 131 126 126 VAL VAL A . n A 1 132 ASN 132 127 127 ASN ASN A . n A 1 133 GLY 133 128 128 GLY GLY A . n A 1 134 PRO 134 129 129 PRO PRO A . n A 1 135 VAL 135 130 130 VAL VAL A . n A 1 136 ALA 136 131 131 ALA ALA A . n A 1 137 VAL 137 132 132 VAL VAL A . n A 1 138 ALA 138 133 133 ALA ALA A . n A 1 139 VAL 139 134 134 VAL VAL A . n A 1 140 ASP 140 135 135 ASP ASP A . n A 1 141 ALA 141 136 136 ALA ALA A . n A 1 142 SER 142 139 139 SER SER A . n A 1 143 SER 143 140 140 SER SER A . n A 1 144 TRP 144 141 141 TRP TRP A . n A 1 145 MET 145 142 142 MET MET A . n A 1 146 THR 146 143 143 THR THR A . n A 1 147 TYR 147 144 144 TYR TYR A . n A 1 148 THR 148 145 145 THR THR A . n A 1 149 GLY 149 146 146 GLY GLY A . n A 1 150 GLY 150 147 147 GLY GLY A . n A 1 151 VAL 151 148 148 VAL VAL A . n A 1 152 MET 152 149 149 MET MET A . n A 1 153 THR 153 151 151 THR THR A . n A 1 154 SER 154 152 152 SER SER A . n A 1 155 CYS 155 153 153 CYS CYS A . n A 1 156 VAL 156 154 154 VAL VAL A . n A 1 157 SER 157 155 155 SER SER A . n A 1 158 GLU 158 156 156 GLU GLU A . n A 1 159 GLN 159 156 156 GLN GLN A A n A 1 160 LEU 160 157 157 LEU LEU A . n A 1 161 ASP 161 158 158 ASP ASP A . n A 1 162 HIS 162 159 159 HIS HIS A . n A 1 163 GLY 163 160 160 GLY GLY A . n A 1 164 VAL 164 161 161 VAL VAL A . n A 1 165 LEU 165 162 162 LEU LEU A . n A 1 166 LEU 166 163 163 LEU LEU A . n A 1 167 VAL 167 164 164 VAL VAL A . n A 1 168 GLY 168 165 165 GLY GLY A . n A 1 169 TYR 169 166 166 TYR TYR A . n A 1 170 ASN 170 167 167 ASN ASN A . n A 1 171 ASP 171 167 167 ASP ASP A A n A 1 172 SER 172 167 167 SER SER A B n A 1 173 ALA 173 167 167 ALA ALA A C n A 1 174 ALA 174 167 167 ALA ALA A D n A 1 175 VAL 175 168 168 VAL VAL A . n A 1 176 PRO 176 169 169 PRO PRO A . n A 1 177 TYR 177 170 170 TYR TYR A . n A 1 178 TRP 178 171 171 TRP TRP A . n A 1 179 ILE 179 172 172 ILE ILE A . n A 1 180 ILE 180 173 173 ILE ILE A . n A 1 181 LYS 181 174 174 LYS LYS A . n A 1 182 ASN 182 175 175 ASN ASN A . n A 1 183 SER 183 176 176 SER SER A . n A 1 184 TRP 184 177 177 TRP TRP A . n A 1 185 THR 185 178 178 THR THR A . n A 1 186 THR 186 179 179 THR THR A . n A 1 187 GLN 187 180 180 GLN GLN A . n A 1 188 TRP 188 181 181 TRP TRP A . n A 1 189 GLY 189 182 182 GLY GLY A . n A 1 190 GLU 190 183 183 GLU GLU A . n A 1 191 GLU 191 184 184 GLU GLU A . n A 1 192 GLY 192 185 185 GLY GLY A . n A 1 193 TYR 193 186 186 TYR TYR A . n A 1 194 ILE 194 187 187 ILE ILE A . n A 1 195 ARG 195 188 188 ARG ARG A . n A 1 196 ILE 196 189 189 ILE ILE A . n A 1 197 ALA 197 190 190 ALA ALA A . n A 1 198 LYS 198 191 191 LYS LYS A . n A 1 199 GLY 199 192 192 GLY GLY A . n A 1 200 SER 200 193 193 SER SER A . n A 1 201 ASN 201 198 198 ASN ASN A . n A 1 202 GLN 202 199 199 GLN GLN A . n A 1 203 CYS 203 200 200 CYS CYS A . n A 1 204 LEU 204 201 201 LEU LEU A . n A 1 205 VAL 205 202 202 VAL VAL A . n A 1 206 LYS 206 203 203 LYS LYS A . n A 1 207 GLU 207 204 204 GLU GLU A . n A 1 208 GLU 208 205 205 GLU GLU A . n A 1 209 ALA 209 206 206 ALA ALA A . n A 1 210 SER 210 207 207 SER SER A . n A 1 211 SER 211 208 208 SER SER A . n A 1 212 ALA 212 209 209 ALA ALA A . n A 1 213 VAL 213 210 210 VAL VAL A . n A 1 214 VAL 214 211 211 VAL VAL A . n A 1 215 GLY 215 212 212 GLY GLY A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-06-10 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' 'Structure summary' 7 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 X-PLOR refinement 3.843 ? 4 # _pdbx_entry_details.entry_id 1EWM _pdbx_entry_details.nonpolymer_details ;RL2 IS AN E-64 ANALOG. RL2 WAS N-(3-CARBOXYOXIRANE-2-CARBONYL)-L- HOMOPHENYLALANYL-AMINO-2-METHYLBUTANE BEFORE REACTION WITH THE PROTEASE. DURING REACTION WITH THE PROTEASE, THE EPOXIDE RING OPENS TO FORM N-[3-CARBOXY-2-HYDROXY- PROPIONYL]-L-HOMOPHENYLALANYL-AMINO-2-METHYLBUTANE. THE SG OF CYS 25 IS THEN LINKED TO THE C2 OF RL2 280 AFTER REACTION. ; _pdbx_entry_details.sequence_details 'THERE IS A STOP CODON AFTER RESIDUE 212.' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 NE2 A HIS 43 ? ? CD2 A HIS 43 ? ? 1.307 1.373 -0.066 0.011 N 2 1 NE2 A HIS 110 ? ? CD2 A HIS 110 ? ? 1.306 1.373 -0.067 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CD1 A TRP 7 ? ? CG A TRP 7 ? ? CD2 A TRP 7 ? ? 113.06 106.30 6.76 0.80 N 2 1 CE2 A TRP 7 ? ? CD2 A TRP 7 ? ? CG A TRP 7 ? ? 101.27 107.30 -6.03 0.80 N 3 1 CD1 A TRP 26 ? ? CG A TRP 26 ? ? CD2 A TRP 26 ? ? 112.43 106.30 6.13 0.80 N 4 1 CE2 A TRP 26 ? ? CD2 A TRP 26 ? ? CG A TRP 26 ? ? 101.62 107.30 -5.68 0.80 N 5 1 CD1 A TRP 38 ? ? CG A TRP 38 ? ? CD2 A TRP 38 ? ? 113.19 106.30 6.89 0.80 N 6 1 CE2 A TRP 38 ? ? CD2 A TRP 38 ? ? CG A TRP 38 ? ? 101.28 107.30 -6.02 0.80 N 7 1 CD1 A TRP 74 ? ? CG A TRP 74 ? ? CD2 A TRP 74 ? ? 112.36 106.30 6.06 0.80 N 8 1 CE2 A TRP 74 ? ? CD2 A TRP 74 ? ? CG A TRP 74 ? ? 101.71 107.30 -5.59 0.80 N 9 1 CD1 A TRP 123 ? ? CG A TRP 123 ? ? CD2 A TRP 123 ? ? 112.68 106.30 6.38 0.80 N 10 1 CB A TRP 123 ? ? CG A TRP 123 ? ? CD1 A TRP 123 ? ? 118.64 127.00 -8.36 1.30 N 11 1 CE2 A TRP 123 ? ? CD2 A TRP 123 ? ? CG A TRP 123 ? ? 101.45 107.30 -5.85 0.80 N 12 1 CD1 A TRP 141 ? ? CG A TRP 141 ? ? CD2 A TRP 141 ? ? 112.26 106.30 5.96 0.80 N 13 1 CE2 A TRP 141 ? ? CD2 A TRP 141 ? ? CG A TRP 141 ? ? 101.97 107.30 -5.33 0.80 N 14 1 CD1 A TRP 171 ? ? CG A TRP 171 ? ? CD2 A TRP 171 ? ? 112.67 106.30 6.37 0.80 N 15 1 CE2 A TRP 171 ? ? CD2 A TRP 171 ? ? CG A TRP 171 ? ? 101.56 107.30 -5.74 0.80 N 16 1 CD1 A TRP 177 ? ? CG A TRP 177 ? ? CD2 A TRP 177 ? ? 112.54 106.30 6.24 0.80 N 17 1 CE2 A TRP 177 ? ? CD2 A TRP 177 ? ? CG A TRP 177 ? ? 101.55 107.30 -5.75 0.80 N 18 1 CD1 A TRP 181 ? ? CG A TRP 181 ? ? CD2 A TRP 181 ? ? 112.46 106.30 6.16 0.80 N 19 1 CE2 A TRP 181 ? ? CD2 A TRP 181 ? ? CG A TRP 181 ? ? 101.97 107.30 -5.33 0.80 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 2 ? ? -5.96 -67.18 2 1 THR A 178 ? ? 68.36 171.76 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'N-[3-CARBOXY-2-HYDROXY-PROPIONYL]-L-HOMOPHENYLALANYL-AMINO-2-METHYLBUTANE' RL2 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RL2 1 280 280 RL2 RL2 A . C 3 HOH 1 281 1 HOH WAT A . C 3 HOH 2 282 2 HOH WAT A . C 3 HOH 3 283 3 HOH WAT A . C 3 HOH 4 284 4 HOH WAT A . C 3 HOH 5 285 5 HOH WAT A . C 3 HOH 6 286 6 HOH WAT A . C 3 HOH 7 287 7 HOH WAT A . C 3 HOH 8 288 8 HOH WAT A . C 3 HOH 9 289 9 HOH WAT A . C 3 HOH 10 290 10 HOH WAT A . C 3 HOH 11 291 11 HOH WAT A . C 3 HOH 12 292 12 HOH WAT A . C 3 HOH 13 293 13 HOH WAT A . C 3 HOH 14 294 14 HOH WAT A . C 3 HOH 15 295 15 HOH WAT A . C 3 HOH 16 296 16 HOH WAT A . C 3 HOH 17 297 17 HOH WAT A . C 3 HOH 18 298 18 HOH WAT A . C 3 HOH 19 299 19 HOH WAT A . C 3 HOH 20 300 20 HOH WAT A . C 3 HOH 21 301 21 HOH WAT A . C 3 HOH 22 302 22 HOH WAT A . C 3 HOH 23 303 23 HOH WAT A . C 3 HOH 24 304 24 HOH WAT A . C 3 HOH 25 305 25 HOH WAT A . C 3 HOH 26 306 26 HOH WAT A . C 3 HOH 27 307 27 HOH WAT A . C 3 HOH 28 308 28 HOH WAT A . C 3 HOH 29 309 29 HOH WAT A . C 3 HOH 30 310 30 HOH WAT A . C 3 HOH 31 311 31 HOH WAT A . C 3 HOH 32 312 32 HOH WAT A . C 3 HOH 33 313 33 HOH WAT A . C 3 HOH 34 314 34 HOH WAT A . C 3 HOH 35 315 35 HOH WAT A . C 3 HOH 36 316 36 HOH WAT A . C 3 HOH 37 317 37 HOH WAT A . C 3 HOH 38 318 38 HOH WAT A . C 3 HOH 39 319 39 HOH WAT A . C 3 HOH 40 320 40 HOH WAT A . C 3 HOH 41 321 41 HOH WAT A . C 3 HOH 42 322 42 HOH WAT A . C 3 HOH 43 323 43 HOH WAT A . C 3 HOH 44 324 44 HOH WAT A . C 3 HOH 45 325 45 HOH WAT A . C 3 HOH 46 326 46 HOH WAT A . C 3 HOH 47 327 47 HOH WAT A . C 3 HOH 48 328 48 HOH WAT A . C 3 HOH 49 329 49 HOH WAT A . C 3 HOH 50 330 50 HOH WAT A . C 3 HOH 51 331 51 HOH WAT A . C 3 HOH 52 332 52 HOH WAT A . C 3 HOH 53 333 53 HOH WAT A . C 3 HOH 54 334 54 HOH WAT A . C 3 HOH 55 335 55 HOH WAT A . C 3 HOH 56 336 56 HOH WAT A . C 3 HOH 57 337 57 HOH WAT A . #