HEADER REPLICATION/DNA 06-MAY-00 1EYG TITLE CRYSTAL STRUCTURE OF CHYMOTRYPTIC FRAGMENT OF E. COLI SSB BOUND TO TWO TITLE 2 35-MER SINGLE STRAND DNAS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SINGLE STRANDED 28-MER OF D(C); COMPND 3 CHAIN: Q, R; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SINGLE-STRAND DNA-BINDING PROTEIN; COMPND 7 CHAIN: A, B, C, D; COMPND 8 FRAGMENT: CHYMOTRYPTIC FRAGMENT; COMPND 9 SYNONYM: SSB-C; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 5 ORGANISM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-DNA COMPLEX; OB FOLD; SE-MET; MAD PHASING; SSB; BINDING MODE, KEYWDS 2 REPLICATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.RAGHUNATHAN,G.WAKSMAN REVDAT 5 07-FEB-24 1EYG 1 REMARK REVDAT 4 24-FEB-09 1EYG 1 VERSN REVDAT 3 23-MAY-06 1EYG 1 SHEET KEYWDS REMARK REVDAT 2 21-AUG-00 1EYG 1 JRNL REVDAT 1 01-AUG-00 1EYG 0 JRNL AUTH S.RAGHUNATHAN,A.G.KOZLOV,T.M.LOHMAN,G.WAKSMAN JRNL TITL STRUCTURE OF THE DNA BINDING DOMAIN OF E. COLI SSB BOUND TO JRNL TITL 2 SSDNA. JRNL REF NAT.STRUCT.BIOL. V. 7 648 2000 JRNL REFN ISSN 1072-8368 JRNL PMID 10932248 JRNL DOI 10.1038/77943 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.5 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 272185.090 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 12430 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.256 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1204 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1578 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 144 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.026 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3245 REMARK 3 NUCLEIC ACID ATOMS : 960 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.87000 REMARK 3 B22 (A**2) : 9.82000 REMARK 3 B33 (A**2) : -5.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM SIGMAA (A) : 0.39 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.43 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 BOND ANGLES (DEGREES) : 2.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 30.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.810 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 64.06 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PA REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PA REMARK 3 PARAMETER FILE 3 : WATER_REP.PARA REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1EYG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-00. REMARK 100 THE DEPOSITION ID IS D_1000011025. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-98 REMARK 200 TEMPERATURE (KELVIN) : 103 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 7 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11228 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.24600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000,PEG 200, HEPES, PH 7.5, VAPOR REMARK 280 DIFFUSION, MACRO SEEDING, TEMPERATURE 291K, VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.34400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.54050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.34400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.54050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: R, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: Q, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DC Q 1 REMARK 465 DC Q 2 REMARK 465 DC Q 31 REMARK 465 DC Q 32 REMARK 465 DC Q 33 REMARK 465 DC Q 34 REMARK 465 DC Q 35 REMARK 465 DC R 101 REMARK 465 DC R 102 REMARK 465 DC R 117 REMARK 465 DC R 118 REMARK 465 DC R 128 REMARK 465 DC R 129 REMARK 465 DC R 130 REMARK 465 DC R 131 REMARK 465 DC R 132 REMARK 465 DC R 133 REMARK 465 DC R 134 REMARK 465 DC R 135 REMARK 465 MET A 1000 REMARK 465 GLY A 1113 REMARK 465 GLY A 1114 REMARK 465 ARG A 1115 REMARK 465 MET B 2000 REMARK 465 ARG B 2041 REMARK 465 ASP B 2042 REMARK 465 LYS B 2043 REMARK 465 ALA B 2044 REMARK 465 THR B 2045 REMARK 465 GLY B 2046 REMARK 465 GLU B 2047 REMARK 465 MET B 2048 REMARK 465 LYS B 2049 REMARK 465 GLY B 2114 REMARK 465 ARG B 2115 REMARK 465 MET C 3000 REMARK 465 GLY C 3113 REMARK 465 GLY C 3114 REMARK 465 ARG C 3115 REMARK 465 MET D 4000 REMARK 465 THR D 4045 REMARK 465 GLY D 4046 REMARK 465 GLU D 4047 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DC Q 3 P OP1 OP2 REMARK 470 DC R 103 P OP1 OP2 REMARK 470 DC R 119 P OP1 OP2 REMARK 470 ARG A1003 CG CD NE CZ NH1 NH2 REMARK 470 GLN A1016 CG CD OE1 NE2 REMARK 470 ASN A1025 CG OD1 ND2 REMARK 470 ARG A1041 CG CD NE CZ NH1 NH2 REMARK 470 ASP A1042 CG OD1 OD2 REMARK 470 THR A1045 OG1 CG2 REMARK 470 GLU A1047 CG CD OE1 OE2 REMARK 470 GLU A1069 CG CD OE1 OE2 REMARK 470 ARG A1072 CG CD NE CZ NH1 NH2 REMARK 470 ASN A1104 CG OD1 ND2 REMARK 470 VAL A1105 CG1 CG2 REMARK 470 ARG B2003 CG CD NE CZ NH1 NH2 REMARK 470 GLU B2019 CG CD OE1 OE2 REMARK 470 ASN B2025 CG OD1 ND2 REMARK 470 ARG B2056 CG CD NE CZ NH1 NH2 REMARK 470 LYS B2062 CG CD CE NZ REMARK 470 GLU B2069 CG CD OE1 OE2 REMARK 470 TYR B2070 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B2072 CG CD NE CZ NH1 NH2 REMARK 470 ASN B2104 CG OD1 ND2 REMARK 470 VAL B2105 CG1 CG2 REMARK 470 ARG C3003 CG CD NE CZ NH1 NH2 REMARK 470 GLU C3019 CG CD OE1 OE2 REMARK 470 ASN C3025 CG OD1 ND2 REMARK 470 ARG C3041 CG CD NE CZ NH1 NH2 REMARK 470 THR C3045 OG1 CG2 REMARK 470 LYS C3049 CG CD CE NZ REMARK 470 ARG C3056 CG CD NE CZ NH1 NH2 REMARK 470 LYS C3062 CG CD CE NZ REMARK 470 GLU C3069 CG CD OE1 OE2 REMARK 470 TYR C3070 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG C3072 CG CD NE CZ NH1 NH2 REMARK 470 ASN C3104 CG OD1 ND2 REMARK 470 VAL C3105 CG1 CG2 REMARK 470 GLN D4016 CG CD OE1 NE2 REMARK 470 ASN D4025 CG OD1 ND2 REMARK 470 ARG D4041 CG CD NE CZ NH1 NH2 REMARK 470 ASP D4042 CG OD1 OD2 REMARK 470 LYS D4043 CG CD CE NZ REMARK 470 MET D4048 CG SD CE REMARK 470 LYS D4049 CG CD CE NZ REMARK 470 GLU D4069 CG CD OE1 OE2 REMARK 470 ARG D4072 CG CD NE CZ NH1 NH2 REMARK 470 ASN D4104 CG OD1 ND2 REMARK 470 VAL D4105 CG1 CG2 REMARK 470 ARG D4115 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 DC R 114 N ALA B 2001 1.80 REMARK 500 O5' DC R 111 NE ARG B 2084 1.84 REMARK 500 OP1 DC R 126 OD1 ASN A 1031 1.87 REMARK 500 O THR A 1045 N GLU A 1047 1.88 REMARK 500 O3' DC Q 10 NE ARG C 3084 1.92 REMARK 500 O3' DC Q 13 N ALA C 3001 1.96 REMARK 500 O5' DC R 121 CZ2 TRP A 1054 2.00 REMARK 500 OP2 DC Q 10 CZ ARG C 3086 2.01 REMARK 500 O THR D 4089 O GLN D 4094 2.03 REMARK 500 OP2 DC Q 26 OE2 GLU D 4100 2.05 REMARK 500 O3' DC R 110 NH2 ARG B 2084 2.07 REMARK 500 OP1 DC Q 9 OG1 THR C 3098 2.11 REMARK 500 N4 DC R 120 OE2 GLU A 1050 2.14 REMARK 500 OP1 DC Q 10 CB THR C 3098 2.14 REMARK 500 NH2 ARG D 4084 OE2 GLU D 4100 2.15 REMARK 500 NH1 ARG D 4084 OE1 GLU D 4100 2.16 REMARK 500 OP1 DC Q 27 NH1 ARG D 4084 2.16 REMARK 500 OP1 DC R 105 NZ LYS B 2073 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 2086 O THR C 3089 3445 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC Q 21 O3' DC Q 22 P 0.073 REMARK 500 DC Q 22 O3' DC Q 22 C3' -0.051 REMARK 500 DC R 111 C5' DC R 111 C4' 0.083 REMARK 500 THR A1089 C THR A1089 O -0.198 REMARK 500 THR D4089 C THR D4089 O -0.220 REMARK 500 GLN D4091 N GLN D4091 CA 0.648 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC Q 3 N1 - C1' - C2' ANGL. DEV. = 10.2 DEGREES REMARK 500 DC Q 6 O4' - C1' - C2' ANGL. DEV. = 3.2 DEGREES REMARK 500 DC Q 7 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC Q 10 N1 - C1' - C2' ANGL. DEV. = 9.3 DEGREES REMARK 500 DC Q 12 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DC Q 12 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC Q 13 O4' - C1' - C2' ANGL. DEV. = 3.0 DEGREES REMARK 500 DC Q 13 N1 - C1' - C2' ANGL. DEV. = 9.2 DEGREES REMARK 500 DC Q 14 O4' - C4' - C3' ANGL. DEV. = -4.9 DEGREES REMARK 500 DC Q 14 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC Q 20 O4' - C1' - C2' ANGL. DEV. = 3.4 DEGREES REMARK 500 DC Q 20 N1 - C1' - C2' ANGL. DEV. = 8.5 DEGREES REMARK 500 DC Q 21 O4' - C4' - C3' ANGL. DEV. = -3.3 DEGREES REMARK 500 DC Q 21 C5' - C4' - C3' ANGL. DEV. = 7.3 DEGREES REMARK 500 DC Q 21 O4' - C1' - N1 ANGL. DEV. = 7.3 DEGREES REMARK 500 DC Q 22 C4' - C3' - C2' ANGL. DEV. = 5.8 DEGREES REMARK 500 DC Q 22 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC Q 25 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC Q 27 O4' - C4' - C3' ANGL. DEV. = 4.1 DEGREES REMARK 500 DC Q 28 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 DC Q 30 O4' - C4' - C3' ANGL. DEV. = -3.0 DEGREES REMARK 500 DC Q 30 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC R 104 O3' - P - O5' ANGL. DEV. = 13.3 DEGREES REMARK 500 DC R 104 O3' - P - OP2 ANGL. DEV. = -26.8 DEGREES REMARK 500 DC R 104 O3' - P - OP1 ANGL. DEV. = -43.5 DEGREES REMARK 500 DC R 104 O5' - P - OP1 ANGL. DEV. = -28.5 DEGREES REMARK 500 DC R 104 O5' - P - OP2 ANGL. DEV. = -12.7 DEGREES REMARK 500 DC R 107 O4' - C1' - N1 ANGL. DEV. = 6.0 DEGREES REMARK 500 DC R 110 O4' - C4' - C3' ANGL. DEV. = 4.7 DEGREES REMARK 500 DC R 110 N1 - C1' - C2' ANGL. DEV. = 9.8 DEGREES REMARK 500 DC R 111 C5' - C4' - C3' ANGL. DEV. = 10.1 DEGREES REMARK 500 DC R 112 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC R 113 O4' - C1' - C2' ANGL. DEV. = 3.3 DEGREES REMARK 500 DC R 120 O4' - C4' - C3' ANGL. DEV. = -3.5 DEGREES REMARK 500 DC R 120 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC R 121 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC R 122 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC R 126 O4' - C4' - C3' ANGL. DEV. = -4.1 DEGREES REMARK 500 DC R 126 C5' - C4' - C3' ANGL. DEV. = 9.1 DEGREES REMARK 500 LEU A1034 CA - CB - CG ANGL. DEV. = 18.3 DEGREES REMARK 500 ALA A1044 N - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 ARG A1084 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 THR D4089 CA - C - N ANGL. DEV. = 16.2 DEGREES REMARK 500 THR D4089 O - C - N ANGL. DEV. = -10.3 DEGREES REMARK 500 GLN D4091 N - CA - C ANGL. DEV. = -26.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A1002 -118.11 -86.24 REMARK 500 ARG A1003 77.51 35.02 REMARK 500 ASN A1025 66.83 76.95 REMARK 500 ALA A1028 81.94 70.81 REMARK 500 TRP A1040 -176.91 -174.03 REMARK 500 ARG A1041 69.12 -161.21 REMARK 500 ALA A1044 63.47 79.74 REMARK 500 THR A1045 -0.05 73.11 REMARK 500 GLU A1047 -15.63 52.11 REMARK 500 LYS A1049 58.49 -171.31 REMARK 500 GLN A1051 105.68 176.27 REMARK 500 LYS A1073 -82.54 -24.78 REMARK 500 SER A1075 138.05 -34.94 REMARK 500 ASN A1104 -135.71 -117.36 REMARK 500 VAL A1105 -87.58 -32.73 REMARK 500 THR A1108 144.40 163.29 REMARK 500 SER B2002 -179.00 -66.01 REMARK 500 ARG B2003 179.92 51.90 REMARK 500 GLN B2016 144.08 -173.51 REMARK 500 MET B2023 -172.69 -53.47 REMARK 500 PRO B2024 -135.41 -55.40 REMARK 500 ASN B2025 107.45 -44.82 REMARK 500 ALA B2028 88.85 -175.17 REMARK 500 LYS B2073 -105.50 -9.75 REMARK 500 GLN B2091 63.74 -63.05 REMARK 500 SER B2092 -10.64 -168.12 REMARK 500 ASN B2104 -110.64 -113.95 REMARK 500 VAL B2105 -107.90 -42.43 REMARK 500 SER C3002 -167.12 -67.99 REMARK 500 ARG C3003 111.57 49.44 REMARK 500 GLN C3016 144.45 -171.19 REMARK 500 MET C3023 -175.87 -49.46 REMARK 500 PRO C3024 -133.59 -57.50 REMARK 500 ASN C3025 108.28 -45.57 REMARK 500 ALA C3028 88.19 -175.70 REMARK 500 TRP C3040 81.68 165.08 REMARK 500 ARG C3041 108.66 -42.87 REMARK 500 LYS C3043 120.56 -14.96 REMARK 500 ALA C3044 55.73 109.43 REMARK 500 THR C3045 -17.92 48.00 REMARK 500 GLU C3047 111.50 90.05 REMARK 500 MET C3048 108.71 59.43 REMARK 500 GLN C3051 111.58 -166.19 REMARK 500 LYS C3073 -101.20 -12.78 REMARK 500 GLN C3091 62.84 -64.17 REMARK 500 SER C3092 -4.90 -169.07 REMARK 500 ASN C3104 -112.87 -114.65 REMARK 500 VAL C3105 -105.29 -44.46 REMARK 500 SER D4002 -109.14 -83.33 REMARK 500 ARG D4003 71.22 36.26 REMARK 500 REMARK 500 THIS ENTRY HAS 63 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP D 4090 GLN D 4091 -103.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC Q 7 0.09 SIDE CHAIN REMARK 500 DC Q 10 0.12 SIDE CHAIN REMARK 500 DC Q 14 0.09 SIDE CHAIN REMARK 500 DC Q 19 0.07 SIDE CHAIN REMARK 500 DC Q 21 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KAW RELATED DB: PDB REMARK 900 CONTAINS THE SAME PROTEIN UNCOMPLEXED DBREF 1EYG A 1000 1115 UNP P0AGE0 SSB_ECOLI 1 116 DBREF 1EYG B 2000 2115 UNP P0AGE0 SSB_ECOLI 1 116 DBREF 1EYG C 3000 3115 UNP P0AGE0 SSB_ECOLI 1 116 DBREF 1EYG D 4000 4115 UNP P0AGE0 SSB_ECOLI 1 116 DBREF 1EYG Q 1 35 PDB 1EYG 1EYG 1 35 DBREF 1EYG R 101 135 PDB 1EYG 1EYG 101 135 SEQRES 1 Q 35 DC DC DC DC DC DC DC DC DC DC DC DC DC SEQRES 2 Q 35 DC DC DC DC DC DC DC DC DC DC DC DC DC SEQRES 3 Q 35 DC DC DC DC DC DC DC DC DC SEQRES 1 R 35 DC DC DC DC DC DC DC DC DC DC DC DC DC SEQRES 2 R 35 DC DC DC DC DC DC DC DC DC DC DC DC DC SEQRES 3 R 35 DC DC DC DC DC DC DC DC DC SEQRES 1 A 116 MET ALA SER ARG GLY VAL ASN LYS VAL ILE LEU VAL GLY SEQRES 2 A 116 ASN LEU GLY GLN ASP PRO GLU VAL ARG TYR MET PRO ASN SEQRES 3 A 116 GLY GLY ALA VAL ALA ASN ILE THR LEU ALA THR SER GLU SEQRES 4 A 116 SER TRP ARG ASP LYS ALA THR GLY GLU MET LYS GLU GLN SEQRES 5 A 116 THR GLU TRP HIS ARG VAL VAL LEU PHE GLY LYS LEU ALA SEQRES 6 A 116 GLU VAL ALA SER GLU TYR LEU ARG LYS GLY SER GLN VAL SEQRES 7 A 116 TYR ILE GLU GLY GLN LEU ARG THR ARG LYS TRP THR ASP SEQRES 8 A 116 GLN SER GLY GLN ASP ARG TYR THR THR GLU VAL VAL VAL SEQRES 9 A 116 ASN VAL GLY GLY THR MET GLN MET LEU GLY GLY ARG SEQRES 1 B 116 MET ALA SER ARG GLY VAL ASN LYS VAL ILE LEU VAL GLY SEQRES 2 B 116 ASN LEU GLY GLN ASP PRO GLU VAL ARG TYR MET PRO ASN SEQRES 3 B 116 GLY GLY ALA VAL ALA ASN ILE THR LEU ALA THR SER GLU SEQRES 4 B 116 SER TRP ARG ASP LYS ALA THR GLY GLU MET LYS GLU GLN SEQRES 5 B 116 THR GLU TRP HIS ARG VAL VAL LEU PHE GLY LYS LEU ALA SEQRES 6 B 116 GLU VAL ALA SER GLU TYR LEU ARG LYS GLY SER GLN VAL SEQRES 7 B 116 TYR ILE GLU GLY GLN LEU ARG THR ARG LYS TRP THR ASP SEQRES 8 B 116 GLN SER GLY GLN ASP ARG TYR THR THR GLU VAL VAL VAL SEQRES 9 B 116 ASN VAL GLY GLY THR MET GLN MET LEU GLY GLY ARG SEQRES 1 C 116 MET ALA SER ARG GLY VAL ASN LYS VAL ILE LEU VAL GLY SEQRES 2 C 116 ASN LEU GLY GLN ASP PRO GLU VAL ARG TYR MET PRO ASN SEQRES 3 C 116 GLY GLY ALA VAL ALA ASN ILE THR LEU ALA THR SER GLU SEQRES 4 C 116 SER TRP ARG ASP LYS ALA THR GLY GLU MET LYS GLU GLN SEQRES 5 C 116 THR GLU TRP HIS ARG VAL VAL LEU PHE GLY LYS LEU ALA SEQRES 6 C 116 GLU VAL ALA SER GLU TYR LEU ARG LYS GLY SER GLN VAL SEQRES 7 C 116 TYR ILE GLU GLY GLN LEU ARG THR ARG LYS TRP THR ASP SEQRES 8 C 116 GLN SER GLY GLN ASP ARG TYR THR THR GLU VAL VAL VAL SEQRES 9 C 116 ASN VAL GLY GLY THR MET GLN MET LEU GLY GLY ARG SEQRES 1 D 116 MET ALA SER ARG GLY VAL ASN LYS VAL ILE LEU VAL GLY SEQRES 2 D 116 ASN LEU GLY GLN ASP PRO GLU VAL ARG TYR MET PRO ASN SEQRES 3 D 116 GLY GLY ALA VAL ALA ASN ILE THR LEU ALA THR SER GLU SEQRES 4 D 116 SER TRP ARG ASP LYS ALA THR GLY GLU MET LYS GLU GLN SEQRES 5 D 116 THR GLU TRP HIS ARG VAL VAL LEU PHE GLY LYS LEU ALA SEQRES 6 D 116 GLU VAL ALA SER GLU TYR LEU ARG LYS GLY SER GLN VAL SEQRES 7 D 116 TYR ILE GLU GLY GLN LEU ARG THR ARG LYS TRP THR ASP SEQRES 8 D 116 GLN SER GLY GLN ASP ARG TYR THR THR GLU VAL VAL VAL SEQRES 9 D 116 ASN VAL GLY GLY THR MET GLN MET LEU GLY GLY ARG FORMUL 7 HOH *39(H2 O) HELIX 1 1 GLY A 1061 LEU A 1071 1 11 HELIX 2 2 GLY B 2061 LEU B 2071 1 11 HELIX 3 3 GLY C 3061 LEU C 3071 1 11 HELIX 4 4 GLY D 4061 LEU D 4071 1 11 SHEET 1 M10 VAL A1005 LEU A1014 0 SHEET 2 M10 VAL A1029 SER A1037 -1 O ALA A1035 N ASN A1013 SHEET 3 M10 GLU A1019 ARG A1021 -1 N ARG A1021 O VAL A1029 SHEET 4 M10 VAL A1029 SER A1037 -1 O VAL A1029 N ARG A1021 SHEET 5 M10 THR A1052 PHE A1060 -1 O GLU A1053 N THR A1036 SHEET 6 M10 ASP A1095 VAL A1103 1 O VAL A1103 N VAL A1058 SHEET 7 M10 GLN A1076 THR A1089 -1 N ARG A1086 O THR A1098 SHEET 8 M10 THR A1108 MET A1111 -1 O GLN A1110 N TYR A1078 SHEET 9 M10 GLN A1076 THR A1089 -1 N TYR A1078 O GLN A1110 SHEET 10 M10 VAL A1005 LEU A1014 -1 N LEU A1010 O ILE A1079 SHEET 1 N10 VAL B2005 LEU B2014 0 SHEET 2 N10 VAL B2029 GLU B2038 -1 O ALA B2035 N ASN B2013 SHEET 3 N10 GLU B2019 ARG B2021 -1 N ARG B2021 O VAL B2029 SHEET 4 N10 VAL B2029 GLU B2038 -1 O VAL B2029 N ARG B2021 SHEET 5 N10 GLN B2051 PHE B2060 -1 O GLN B2051 N GLU B2038 SHEET 6 N10 ASP B2095 VAL B2103 1 O VAL B2101 N ARG B2056 SHEET 7 N10 GLN B2076 THR B2089 -1 N ARG B2086 O THR B2098 SHEET 8 N10 THR B2108 MET B2111 -1 O THR B2108 N GLU B2080 SHEET 9 N10 GLN B2076 THR B2089 -1 N GLU B2080 O THR B2108 SHEET 10 N10 VAL B2005 LEU B2014 -1 N LEU B2010 O ILE B2079 SHEET 1 O10 VAL C3005 LEU C3014 0 SHEET 2 O10 VAL C3029 GLU C3038 -1 O ALA C3035 N ASN C3013 SHEET 3 O10 GLU C3019 ARG C3021 -1 N ARG C3021 O VAL C3029 SHEET 4 O10 VAL C3029 GLU C3038 -1 O VAL C3029 N ARG C3021 SHEET 5 O10 GLN C3051 PHE C3060 -1 O VAL C3057 N ILE C3032 SHEET 6 O10 ASP C3095 VAL C3103 1 O VAL C3101 N ARG C3056 SHEET 7 O10 GLN C3076 THR C3089 -1 N ARG C3086 O THR C3098 SHEET 8 O10 THR C3108 MET C3111 -1 O THR C3108 N GLU C3080 SHEET 9 O10 GLN C3076 THR C3089 -1 N GLU C3080 O THR C3108 SHEET 10 O10 VAL C3005 LEU C3014 -1 N LEU C3010 O ILE C3079 SHEET 1 P10 VAL D4005 LEU D4014 0 SHEET 2 P10 VAL D4029 SER D4037 -1 O ALA D4035 N ASN D4013 SHEET 3 P10 GLU D4019 ARG D4021 -1 N ARG D4021 O VAL D4029 SHEET 4 P10 VAL D4029 SER D4037 -1 O VAL D4029 N ARG D4021 SHEET 5 P10 THR D4052 PHE D4060 -1 O GLU D4053 N THR D4036 SHEET 6 P10 ARG D4096 VAL D4102 1 O VAL D4101 N VAL D4058 SHEET 7 P10 GLN D4076 TRP D4088 -1 N ARG D4086 O THR D4098 SHEET 8 P10 THR D4108 MET D4111 -1 O GLN D4110 N TYR D4078 SHEET 9 P10 GLN D4076 TRP D4088 -1 N TYR D4078 O GLN D4110 SHEET 10 P10 VAL D4005 LEU D4014 -1 N LEU D4010 O ILE D4079 CRYST1 98.688 71.081 79.160 90.00 91.93 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010133 0.000000 0.000341 0.00000 SCALE2 0.000000 0.014068 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012640 0.00000