data_1F42 # _entry.id 1F42 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1F42 RCSB RCSB011216 WWPDB D_1000011216 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1F45 _pdbx_database_related.details '1F45 contains INTERLEUKIN-12 BETA CHAIN and INTERLEUKIN-12 ALPHA CHAIN' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1F42 _pdbx_database_status.recvd_initial_deposition_date 2000-06-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yoon, C.' 1 'Johnston, S.C.' 2 'Tang, J.' 3 'Tobin, J.F.' 4 'Somers, W.S.' 5 # _citation.id primary _citation.title 'Charged residues dominate a unique interlocking topography in the heterodimeric cytokine interleukin-12.' _citation.journal_abbrev 'EMBO J.' _citation.journal_volume 19 _citation.page_first 3530 _citation.page_last 3541 _citation.year 2000 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10899108 _citation.pdbx_database_id_DOI 10.1093/emboj/19.14.3530 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yoon, C.' 1 ? primary 'Johnston, S.C.' 2 ? primary 'Tang, J.' 3 ? primary 'Stahl, M.' 4 ? primary 'Tobin, J.F.' 5 ? primary 'Somers, W.S.' 6 ? # _cell.entry_id 1F42 _cell.length_a 34.0 _cell.length_b 55.0 _cell.length_c 189.2 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F42 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'INTERLEUKIN-12 BETA CHAIN' 34739.945 1 ? ? 'RESIDUES 23-328' ? 2 branched man 'alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 1 ? ? ? ? 3 non-polymer syn '5-MERCAPTO-2-NITRO-BENZOIC ACID' 199.184 2 ? ? ? ? 4 water nat water 18.015 55 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;IWELKKDVYVVELDWYPDAPGEMVVLTCDTPEEDGITWTLDQSSEVLGSGKTLTIQVKEFGDAGQYTCHKGGEVLSHSLL LLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRG DNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYENYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTW STPHSYFSLTFCVQVQGKSKREKKDRVFTDKTSATVICRKNASISVRAQDRYYSSSWSEWASVPCS ; _entity_poly.pdbx_seq_one_letter_code_can ;IWELKKDVYVVELDWYPDAPGEMVVLTCDTPEEDGITWTLDQSSEVLGSGKTLTIQVKEFGDAGQYTCHKGGEVLSHSLL LLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRG DNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYENYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTW STPHSYFSLTFCVQVQGKSKREKKDRVFTDKTSATVICRKNASISVRAQDRYYSSSWSEWASVPCS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 TRP n 1 3 GLU n 1 4 LEU n 1 5 LYS n 1 6 LYS n 1 7 ASP n 1 8 VAL n 1 9 TYR n 1 10 VAL n 1 11 VAL n 1 12 GLU n 1 13 LEU n 1 14 ASP n 1 15 TRP n 1 16 TYR n 1 17 PRO n 1 18 ASP n 1 19 ALA n 1 20 PRO n 1 21 GLY n 1 22 GLU n 1 23 MET n 1 24 VAL n 1 25 VAL n 1 26 LEU n 1 27 THR n 1 28 CYS n 1 29 ASP n 1 30 THR n 1 31 PRO n 1 32 GLU n 1 33 GLU n 1 34 ASP n 1 35 GLY n 1 36 ILE n 1 37 THR n 1 38 TRP n 1 39 THR n 1 40 LEU n 1 41 ASP n 1 42 GLN n 1 43 SER n 1 44 SER n 1 45 GLU n 1 46 VAL n 1 47 LEU n 1 48 GLY n 1 49 SER n 1 50 GLY n 1 51 LYS n 1 52 THR n 1 53 LEU n 1 54 THR n 1 55 ILE n 1 56 GLN n 1 57 VAL n 1 58 LYS n 1 59 GLU n 1 60 PHE n 1 61 GLY n 1 62 ASP n 1 63 ALA n 1 64 GLY n 1 65 GLN n 1 66 TYR n 1 67 THR n 1 68 CYS n 1 69 HIS n 1 70 LYS n 1 71 GLY n 1 72 GLY n 1 73 GLU n 1 74 VAL n 1 75 LEU n 1 76 SER n 1 77 HIS n 1 78 SER n 1 79 LEU n 1 80 LEU n 1 81 LEU n 1 82 LEU n 1 83 HIS n 1 84 LYS n 1 85 LYS n 1 86 GLU n 1 87 ASP n 1 88 GLY n 1 89 ILE n 1 90 TRP n 1 91 SER n 1 92 THR n 1 93 ASP n 1 94 ILE n 1 95 LEU n 1 96 LYS n 1 97 ASP n 1 98 GLN n 1 99 LYS n 1 100 GLU n 1 101 PRO n 1 102 LYS n 1 103 ASN n 1 104 LYS n 1 105 THR n 1 106 PHE n 1 107 LEU n 1 108 ARG n 1 109 CYS n 1 110 GLU n 1 111 ALA n 1 112 LYS n 1 113 ASN n 1 114 TYR n 1 115 SER n 1 116 GLY n 1 117 ARG n 1 118 PHE n 1 119 THR n 1 120 CYS n 1 121 TRP n 1 122 TRP n 1 123 LEU n 1 124 THR n 1 125 THR n 1 126 ILE n 1 127 SER n 1 128 THR n 1 129 ASP n 1 130 LEU n 1 131 THR n 1 132 PHE n 1 133 SER n 1 134 VAL n 1 135 LYS n 1 136 SER n 1 137 SER n 1 138 ARG n 1 139 GLY n 1 140 SER n 1 141 SER n 1 142 ASP n 1 143 PRO n 1 144 GLN n 1 145 GLY n 1 146 VAL n 1 147 THR n 1 148 CYS n 1 149 GLY n 1 150 ALA n 1 151 ALA n 1 152 THR n 1 153 LEU n 1 154 SER n 1 155 ALA n 1 156 GLU n 1 157 ARG n 1 158 VAL n 1 159 ARG n 1 160 GLY n 1 161 ASP n 1 162 ASN n 1 163 LYS n 1 164 GLU n 1 165 TYR n 1 166 GLU n 1 167 TYR n 1 168 SER n 1 169 VAL n 1 170 GLU n 1 171 CYS n 1 172 GLN n 1 173 GLU n 1 174 ASP n 1 175 SER n 1 176 ALA n 1 177 CYS n 1 178 PRO n 1 179 ALA n 1 180 ALA n 1 181 GLU n 1 182 GLU n 1 183 SER n 1 184 LEU n 1 185 PRO n 1 186 ILE n 1 187 GLU n 1 188 VAL n 1 189 MET n 1 190 VAL n 1 191 ASP n 1 192 ALA n 1 193 VAL n 1 194 HIS n 1 195 LYS n 1 196 LEU n 1 197 LYS n 1 198 TYR n 1 199 GLU n 1 200 ASN n 1 201 TYR n 1 202 THR n 1 203 SER n 1 204 SER n 1 205 PHE n 1 206 PHE n 1 207 ILE n 1 208 ARG n 1 209 ASP n 1 210 ILE n 1 211 ILE n 1 212 LYS n 1 213 PRO n 1 214 ASP n 1 215 PRO n 1 216 PRO n 1 217 LYS n 1 218 ASN n 1 219 LEU n 1 220 GLN n 1 221 LEU n 1 222 LYS n 1 223 PRO n 1 224 LEU n 1 225 LYS n 1 226 ASN n 1 227 SER n 1 228 ARG n 1 229 GLN n 1 230 VAL n 1 231 GLU n 1 232 VAL n 1 233 SER n 1 234 TRP n 1 235 GLU n 1 236 TYR n 1 237 PRO n 1 238 ASP n 1 239 THR n 1 240 TRP n 1 241 SER n 1 242 THR n 1 243 PRO n 1 244 HIS n 1 245 SER n 1 246 TYR n 1 247 PHE n 1 248 SER n 1 249 LEU n 1 250 THR n 1 251 PHE n 1 252 CYS n 1 253 VAL n 1 254 GLN n 1 255 VAL n 1 256 GLN n 1 257 GLY n 1 258 LYS n 1 259 SER n 1 260 LYS n 1 261 ARG n 1 262 GLU n 1 263 LYS n 1 264 LYS n 1 265 ASP n 1 266 ARG n 1 267 VAL n 1 268 PHE n 1 269 THR n 1 270 ASP n 1 271 LYS n 1 272 THR n 1 273 SER n 1 274 ALA n 1 275 THR n 1 276 VAL n 1 277 ILE n 1 278 CYS n 1 279 ARG n 1 280 LYS n 1 281 ASN n 1 282 ALA n 1 283 SER n 1 284 ILE n 1 285 SER n 1 286 VAL n 1 287 ARG n 1 288 ALA n 1 289 GLN n 1 290 ASP n 1 291 ARG n 1 292 TYR n 1 293 TYR n 1 294 SER n 1 295 SER n 1 296 SER n 1 297 TRP n 1 298 SER n 1 299 GLU n 1 300 TRP n 1 301 ALA n 1 302 SER n 1 303 VAL n 1 304 PRO n 1 305 CYS n 1 306 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'Chinese hamster' _entity_src_gen.pdbx_host_org_scientific_name 'Cricetulus griseus' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 10029 _entity_src_gen.host_org_genus Cricetulus _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line CHO _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PEMC _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_code I12B_HUMAN _struct_ref.db_name UNP _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P29460 _struct_ref.pdbx_align_begin 23 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1F42 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 306 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P29460 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 328 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 306 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose ? 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MNB non-polymer . '5-MERCAPTO-2-NITRO-BENZOIC ACID' ? 'C7 H5 N O4 S' 199.184 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1F42 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 51.67 _exptl_crystal.density_Matthews 2.55 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '18% PEG8000, 0.2M Calcium Acetate, 0.1M Na Cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1997-06-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.542 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_wavelength 1.542 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1F42 _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 15. _reflns.d_resolution_high 2.5 _reflns.number_obs 90266 _reflns.number_all 12537 _reflns.percent_possible_obs 97.0 _reflns.pdbx_Rmerge_I_obs 0.054 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 35.0 _reflns.B_iso_Wilson_estimate 40 _reflns.pdbx_redundancy 7.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 79 _reflns_shell.Rmerge_I_obs 0.16 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 3 _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1F42 _refine.ls_number_reflns_obs 12304 _refine.ls_number_reflns_all 12537 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 2 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 15. _refine.ls_d_res_high 2.5 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.281 _refine.ls_R_factor_all 0.281 _refine.ls_R_factor_R_work 0.227 _refine.ls_R_factor_R_free 0.281 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 615 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2336 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 65 _refine_hist.number_atoms_solvent 55 _refine_hist.number_atoms_total 2456 _refine_hist.d_res_high 2.5 _refine_hist.d_res_low 15. # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.017 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.88 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1F42 _struct.title 'THE P40 DOMAIN OF HUMAN INTERLEUKIN-12' _struct.pdbx_descriptor 'INTERLEUKIN-12 BETA CHAIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1F42 _struct_keywords.pdbx_keywords CYTOKINE _struct_keywords.text Cytokine # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 59 ? ALA A 63 ? GLU A 59 ALA A 63 5 ? 5 HELX_P HELX_P2 2 PHE A 206 ? ILE A 211 ? PHE A 206 ILE A 211 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 68 SG ? ? A CYS 28 A CYS 68 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf2 disulf ? ? A CYS 109 SG ? ? ? 1_555 A CYS 120 SG ? ? A CYS 109 A CYS 120 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf3 disulf ? ? A CYS 148 SG ? ? ? 1_555 A CYS 171 SG ? ? A CYS 148 A CYS 171 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf4 disulf ? ? A CYS 278 SG ? ? ? 1_555 A CYS 305 SG ? ? A CYS 278 A CYS 305 1_555 ? ? ? ? ? ? ? 2.034 ? ? covale1 covale none ? A CYS 177 SG ? ? ? 1_555 C MNB . S5 ? ? A CYS 177 A MNB 504 1_555 ? ? ? ? ? ? ? 2.029 ? ? covale2 covale one ? A ASN 200 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 200 B NAG 1 1_555 ? ? ? ? ? ? ? 1.435 ? N-Glycosylation covale3 covale none ? A CYS 252 SG ? ? ? 1_555 D MNB . S5 ? ? A CYS 252 A MNB 505 1_555 ? ? ? ? ? ? ? 2.033 ? ? covale4 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.376 ? ? covale5 covale both ? B NAG . O4 ? ? ? 1_555 B MAN . C1 ? ? B NAG 2 B MAN 3 1_555 ? ? ? ? ? ? ? 1.387 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id THR _struct_mon_prot_cis.label_seq_id 242 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id THR _struct_mon_prot_cis.auth_seq_id 242 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 243 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 243 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.46 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 5 ? C ? 2 ? D ? 4 ? E ? 3 ? F ? 3 ? G ? 3 ? H ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel G 1 2 ? anti-parallel G 2 3 ? anti-parallel H 1 2 ? anti-parallel H 2 3 ? anti-parallel H 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 48 ? SER A 49 ? GLY A 48 SER A 49 A 2 THR A 37 ? LEU A 40 ? THR A 37 LEU A 40 A 3 GLY A 64 ? LYS A 70 ? GLY A 64 LYS A 70 A 4 GLU A 73 ? GLU A 86 ? GLU A 73 GLU A 86 A 5 VAL A 8 ? ASP A 14 ? VAL A 8 ASP A 14 A 6 TRP A 2 ? LYS A 5 ? TRP A 2 LYS A 5 B 1 GLY A 48 ? SER A 49 ? GLY A 48 SER A 49 B 2 THR A 37 ? LEU A 40 ? THR A 37 LEU A 40 B 3 GLY A 64 ? LYS A 70 ? GLY A 64 LYS A 70 B 4 GLU A 73 ? GLU A 86 ? GLU A 73 GLU A 86 B 5 ILE A 89 ? TRP A 90 ? ILE A 89 TRP A 90 C 1 GLU A 22 ? THR A 27 ? GLU A 22 THR A 27 C 2 THR A 52 ? VAL A 57 ? THR A 52 VAL A 57 D 1 THR A 152 ? ARG A 159 ? THR A 152 ARG A 159 D 2 ASN A 162 ? GLU A 173 ? ASN A 162 GLU A 173 D 3 ARG A 117 ? THR A 124 ? ARG A 117 THR A 124 D 4 ARG A 108 ? GLU A 110 ? ARG A 108 GLU A 110 E 1 THR A 152 ? ARG A 159 ? THR A 152 ARG A 159 E 2 ASN A 162 ? GLU A 173 ? ASN A 162 GLU A 173 E 3 VAL A 146 ? CYS A 148 ? VAL A 146 CYS A 148 F 1 LEU A 130 ? ARG A 138 ? LEU A 130 ARG A 138 F 2 ILE A 186 ? HIS A 194 ? ILE A 186 HIS A 194 F 3 LYS A 197 ? PHE A 205 ? LYS A 197 PHE A 205 G 1 LYS A 217 ? PRO A 223 ? LYS A 217 PRO A 223 G 2 GLN A 229 ? GLU A 235 ? GLN A 229 GLU A 235 G 3 SER A 273 ? ILE A 277 ? SER A 273 ILE A 277 H 1 VAL A 267 ? THR A 269 ? VAL A 267 THR A 269 H 2 LEU A 249 ? GLN A 256 ? LEU A 249 GLN A 256 H 3 SER A 283 ? ASP A 290 ? SER A 283 ASP A 290 H 4 ALA A 301 ? PRO A 304 ? ALA A 301 PRO A 304 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 48 ? O GLY A 48 N TRP A 38 ? N TRP A 38 A 2 3 O THR A 39 ? O THR A 39 N THR A 67 ? N THR A 67 A 3 4 O LYS A 70 ? O LYS A 70 N GLU A 73 ? N GLU A 73 A 4 5 O LEU A 79 ? O LEU A 79 N TYR A 9 ? N TYR A 9 A 5 6 N VAL A 10 ? N VAL A 10 O TRP A 2 ? O TRP A 2 B 1 2 O GLY A 48 ? O GLY A 48 N TRP A 38 ? N TRP A 38 B 2 3 O THR A 39 ? O THR A 39 N THR A 67 ? N THR A 67 B 3 4 O LYS A 70 ? O LYS A 70 N GLU A 73 ? N GLU A 73 B 4 5 O GLU A 86 ? O GLU A 86 N ILE A 89 ? N ILE A 89 C 1 2 N LEU A 26 ? N LEU A 26 O LEU A 53 ? O LEU A 53 D 1 2 N ARG A 159 ? N ARG A 159 O ASN A 162 ? O ASN A 162 D 2 3 O CYS A 171 ? O CYS A 171 N PHE A 118 ? N PHE A 118 D 3 4 N TRP A 121 ? N TRP A 121 O ARG A 108 ? O ARG A 108 E 1 2 N ARG A 159 ? N ARG A 159 O ASN A 162 ? O ASN A 162 E 2 3 O GLN A 172 ? O GLN A 172 N THR A 147 ? N THR A 147 F 1 2 O SER A 137 ? O SER A 137 N GLU A 187 ? N GLU A 187 F 2 3 O HIS A 194 ? O HIS A 194 N LYS A 197 ? N LYS A 197 G 1 2 N LYS A 222 ? N LYS A 222 O GLU A 231 ? O GLU A 231 G 2 3 N VAL A 232 ? N VAL A 232 O ALA A 274 ? O ALA A 274 H 1 2 O THR A 269 ? O THR A 269 N PHE A 251 ? N PHE A 251 H 2 3 N GLN A 256 ? N GLN A 256 O SER A 283 ? O SER A 283 H 3 4 N VAL A 286 ? N VAL A 286 O ALA A 301 ? O ALA A 301 # _database_PDB_matrix.entry_id 1F42 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1F42 _atom_sites.fract_transf_matrix[1][1] 0.029412 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018182 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005285 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.text 'MAN B 3 HAS WRONG CHIRALITY AT ATOM C1' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 1 1 ILE ILE A . n A 1 2 TRP 2 2 2 TRP TRP A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 TRP 15 15 15 TRP TRP A . n A 1 16 TYR 16 16 16 TYR TYR A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 MET 23 23 23 MET MET A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 TRP 38 38 38 TRP TRP A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 GLN 56 56 56 GLN GLN A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 ASP 62 62 62 ASP ASP A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 GLN 65 65 65 GLN GLN A . n A 1 66 TYR 66 66 66 TYR TYR A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 CYS 68 68 68 CYS CYS A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 HIS 77 77 77 HIS HIS A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 HIS 83 83 83 HIS HIS A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 TRP 90 90 90 TRP TRP A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 ASP 93 93 93 ASP ASP A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 GLN 98 98 98 GLN GLN A . n A 1 99 LYS 99 99 99 LYS ALA A . n A 1 100 GLU 100 100 100 GLU ALA A . n A 1 101 PRO 101 101 101 PRO PRO A . n A 1 102 LYS 102 102 102 LYS ALA A . n A 1 103 ASN 103 103 103 ASN ALA A . n A 1 104 LYS 104 104 104 LYS ALA A . n A 1 105 THR 105 105 105 THR THR A . n A 1 106 PHE 106 106 106 PHE PHE A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 ARG 108 108 108 ARG ARG A . n A 1 109 CYS 109 109 109 CYS CYS A . n A 1 110 GLU 110 110 110 GLU GLU A . n A 1 111 ALA 111 111 111 ALA ALA A . n A 1 112 LYS 112 112 112 LYS LYS A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 TYR 114 114 114 TYR TYR A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 ARG 117 117 117 ARG ARG A . n A 1 118 PHE 118 118 118 PHE PHE A . n A 1 119 THR 119 119 119 THR THR A . n A 1 120 CYS 120 120 120 CYS CYS A . n A 1 121 TRP 121 121 121 TRP TRP A . n A 1 122 TRP 122 122 122 TRP TRP A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 THR 124 124 124 THR THR A . n A 1 125 THR 125 125 125 THR THR A . n A 1 126 ILE 126 126 126 ILE ILE A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 THR 128 128 128 THR THR A . n A 1 129 ASP 129 129 129 ASP ASP A . n A 1 130 LEU 130 130 130 LEU LEU A . n A 1 131 THR 131 131 131 THR THR A . n A 1 132 PHE 132 132 132 PHE PHE A . n A 1 133 SER 133 133 133 SER SER A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 LYS 135 135 135 LYS ALA A . n A 1 136 SER 136 136 136 SER SER A . n A 1 137 SER 137 137 137 SER SER A . n A 1 138 ARG 138 138 138 ARG ARG A . n A 1 139 GLY 139 139 139 GLY GLY A . n A 1 140 SER 140 140 ? ? ? A . n A 1 141 SER 141 141 ? ? ? A . n A 1 142 ASP 142 142 ? ? ? A . n A 1 143 PRO 143 143 ? ? ? A . n A 1 144 GLN 144 144 ? ? ? A . n A 1 145 GLY 145 145 145 GLY GLY A . n A 1 146 VAL 146 146 146 VAL VAL A . n A 1 147 THR 147 147 147 THR THR A . n A 1 148 CYS 148 148 148 CYS CYS A . n A 1 149 GLY 149 149 149 GLY GLY A . n A 1 150 ALA 150 150 150 ALA ALA A . n A 1 151 ALA 151 151 151 ALA ALA A . n A 1 152 THR 152 152 152 THR THR A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 SER 154 154 154 SER SER A . n A 1 155 ALA 155 155 155 ALA ALA A . n A 1 156 GLU 156 156 156 GLU GLU A . n A 1 157 ARG 157 157 157 ARG ARG A . n A 1 158 VAL 158 158 158 VAL VAL A . n A 1 159 ARG 159 159 159 ARG ARG A . n A 1 160 GLY 160 160 160 GLY GLY A . n A 1 161 ASP 161 161 161 ASP ASP A . n A 1 162 ASN 162 162 162 ASN ASN A . n A 1 163 LYS 163 163 163 LYS LYS A . n A 1 164 GLU 164 164 164 GLU GLU A . n A 1 165 TYR 165 165 165 TYR TYR A . n A 1 166 GLU 166 166 166 GLU GLU A . n A 1 167 TYR 167 167 167 TYR TYR A . n A 1 168 SER 168 168 168 SER SER A . n A 1 169 VAL 169 169 169 VAL VAL A . n A 1 170 GLU 170 170 170 GLU GLU A . n A 1 171 CYS 171 171 171 CYS CYS A . n A 1 172 GLN 172 172 172 GLN GLN A . n A 1 173 GLU 173 173 173 GLU GLU A . n A 1 174 ASP 174 174 174 ASP ASP A . n A 1 175 SER 175 175 175 SER SER A . n A 1 176 ALA 176 176 176 ALA ALA A . n A 1 177 CYS 177 177 177 CYS CYD A . n A 1 178 PRO 178 178 178 PRO PRO A . n A 1 179 ALA 179 179 179 ALA ALA A . n A 1 180 ALA 180 180 180 ALA ALA A . n A 1 181 GLU 181 181 181 GLU GLU A . n A 1 182 GLU 182 182 182 GLU GLU A . n A 1 183 SER 183 183 183 SER SER A . n A 1 184 LEU 184 184 184 LEU LEU A . n A 1 185 PRO 185 185 185 PRO PRO A . n A 1 186 ILE 186 186 186 ILE ILE A . n A 1 187 GLU 187 187 187 GLU GLU A . n A 1 188 VAL 188 188 188 VAL VAL A . n A 1 189 MET 189 189 189 MET MET A . n A 1 190 VAL 190 190 190 VAL VAL A . n A 1 191 ASP 191 191 191 ASP ASP A . n A 1 192 ALA 192 192 192 ALA ALA A . n A 1 193 VAL 193 193 193 VAL VAL A . n A 1 194 HIS 194 194 194 HIS HIS A . n A 1 195 LYS 195 195 195 LYS LYS A . n A 1 196 LEU 196 196 196 LEU LEU A . n A 1 197 LYS 197 197 197 LYS LYS A . n A 1 198 TYR 198 198 198 TYR TYR A . n A 1 199 GLU 199 199 199 GLU GLU A . n A 1 200 ASN 200 200 200 ASN ASN A . n A 1 201 TYR 201 201 201 TYR TYR A . n A 1 202 THR 202 202 202 THR THR A . n A 1 203 SER 203 203 203 SER SER A . n A 1 204 SER 204 204 204 SER SER A . n A 1 205 PHE 205 205 205 PHE PHE A . n A 1 206 PHE 206 206 206 PHE PHE A . n A 1 207 ILE 207 207 207 ILE ILE A . n A 1 208 ARG 208 208 208 ARG ARG A . n A 1 209 ASP 209 209 209 ASP ASP A . n A 1 210 ILE 210 210 210 ILE ILE A . n A 1 211 ILE 211 211 211 ILE ILE A . n A 1 212 LYS 212 212 212 LYS LYS A . n A 1 213 PRO 213 213 213 PRO PRO A . n A 1 214 ASP 214 214 214 ASP ASP A . n A 1 215 PRO 215 215 215 PRO PRO A . n A 1 216 PRO 216 216 216 PRO PRO A . n A 1 217 LYS 217 217 217 LYS LYS A . n A 1 218 ASN 218 218 218 ASN ASN A . n A 1 219 LEU 219 219 219 LEU LEU A . n A 1 220 GLN 220 220 220 GLN GLN A . n A 1 221 LEU 221 221 221 LEU LEU A . n A 1 222 LYS 222 222 222 LYS LYS A . n A 1 223 PRO 223 223 223 PRO PRO A . n A 1 224 LEU 224 224 224 LEU LEU A . n A 1 225 LYS 225 225 225 LYS ALA A . n A 1 226 ASN 226 226 226 ASN ASN A . n A 1 227 SER 227 227 227 SER SER A . n A 1 228 ARG 228 228 228 ARG ARG A . n A 1 229 GLN 229 229 229 GLN GLN A . n A 1 230 VAL 230 230 230 VAL VAL A . n A 1 231 GLU 231 231 231 GLU GLU A . n A 1 232 VAL 232 232 232 VAL VAL A . n A 1 233 SER 233 233 233 SER SER A . n A 1 234 TRP 234 234 234 TRP TRP A . n A 1 235 GLU 235 235 235 GLU GLU A . n A 1 236 TYR 236 236 236 TYR TYR A . n A 1 237 PRO 237 237 237 PRO PRO A . n A 1 238 ASP 238 238 238 ASP ASP A . n A 1 239 THR 239 239 239 THR THR A . n A 1 240 TRP 240 240 240 TRP TRP A . n A 1 241 SER 241 241 241 SER SER A . n A 1 242 THR 242 242 242 THR THR A . n A 1 243 PRO 243 243 243 PRO PRO A . n A 1 244 HIS 244 244 244 HIS HIS A . n A 1 245 SER 245 245 245 SER SER A . n A 1 246 TYR 246 246 246 TYR TYR A . n A 1 247 PHE 247 247 247 PHE PHE A . n A 1 248 SER 248 248 248 SER SER A . n A 1 249 LEU 249 249 249 LEU LEU A . n A 1 250 THR 250 250 250 THR THR A . n A 1 251 PHE 251 251 251 PHE PHE A . n A 1 252 CYS 252 252 252 CYS CYD A . n A 1 253 VAL 253 253 253 VAL VAL A . n A 1 254 GLN 254 254 254 GLN GLN A . n A 1 255 VAL 255 255 255 VAL VAL A . n A 1 256 GLN 256 256 256 GLN GLN A . n A 1 257 GLY 257 257 257 GLY GLY A . n A 1 258 LYS 258 258 258 LYS LYS A . n A 1 259 SER 259 259 259 SER SER A . n A 1 260 LYS 260 260 260 LYS LYS A . n A 1 261 ARG 261 261 261 ARG ARG A . n A 1 262 GLU 262 262 ? ? ? A . n A 1 263 LYS 263 263 ? ? ? A . n A 1 264 LYS 264 264 ? ? ? A . n A 1 265 ASP 265 265 ? ? ? A . n A 1 266 ARG 266 266 266 ARG ARG A . n A 1 267 VAL 267 267 267 VAL VAL A . n A 1 268 PHE 268 268 268 PHE PHE A . n A 1 269 THR 269 269 269 THR THR A . n A 1 270 ASP 270 270 270 ASP ASP A . n A 1 271 LYS 271 271 271 LYS LYS A . n A 1 272 THR 272 272 272 THR THR A . n A 1 273 SER 273 273 273 SER SER A . n A 1 274 ALA 274 274 274 ALA ALA A . n A 1 275 THR 275 275 275 THR THR A . n A 1 276 VAL 276 276 276 VAL VAL A . n A 1 277 ILE 277 277 277 ILE ILE A . n A 1 278 CYS 278 278 278 CYS CYS A . n A 1 279 ARG 279 279 279 ARG ALA A . n A 1 280 LYS 280 280 280 LYS LYS A . n A 1 281 ASN 281 281 281 ASN ASN A . n A 1 282 ALA 282 282 282 ALA ALA A . n A 1 283 SER 283 283 283 SER SER A . n A 1 284 ILE 284 284 284 ILE ILE A . n A 1 285 SER 285 285 285 SER SER A . n A 1 286 VAL 286 286 286 VAL VAL A . n A 1 287 ARG 287 287 287 ARG ARG A . n A 1 288 ALA 288 288 288 ALA ALA A . n A 1 289 GLN 289 289 289 GLN GLN A . n A 1 290 ASP 290 290 290 ASP ASP A . n A 1 291 ARG 291 291 291 ARG ARG A . n A 1 292 TYR 292 292 292 TYR TYR A . n A 1 293 TYR 293 293 293 TYR TYR A . n A 1 294 SER 294 294 294 SER SER A . n A 1 295 SER 295 295 295 SER SER A . n A 1 296 SER 296 296 296 SER SER A . n A 1 297 TRP 297 297 297 TRP TRP A . n A 1 298 SER 298 298 298 SER SER A . n A 1 299 GLU 299 299 299 GLU GLU A . n A 1 300 TRP 300 300 300 TRP TRP A . n A 1 301 ALA 301 301 301 ALA ALA A . n A 1 302 SER 302 302 302 SER SER A . n A 1 303 VAL 303 303 303 VAL VAL A . n A 1 304 PRO 304 304 304 PRO PRO A . n A 1 305 CYS 305 305 305 CYS CYS A . n A 1 306 SER 306 306 306 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MNB 1 504 177 MNB CYD A . D 3 MNB 1 505 252 MNB CYD A . E 4 HOH 1 506 1 HOH WAT A . E 4 HOH 2 507 2 HOH WAT A . E 4 HOH 3 508 3 HOH WAT A . E 4 HOH 4 509 4 HOH WAT A . E 4 HOH 5 510 5 HOH WAT A . E 4 HOH 6 511 6 HOH WAT A . E 4 HOH 7 512 7 HOH WAT A . E 4 HOH 8 513 8 HOH WAT A . E 4 HOH 9 514 9 HOH WAT A . E 4 HOH 10 515 10 HOH WAT A . E 4 HOH 11 516 11 HOH WAT A . E 4 HOH 12 517 12 HOH WAT A . E 4 HOH 13 518 14 HOH WAT A . E 4 HOH 14 519 15 HOH WAT A . E 4 HOH 15 520 16 HOH WAT A . E 4 HOH 16 521 17 HOH WAT A . E 4 HOH 17 522 18 HOH WAT A . E 4 HOH 18 523 19 HOH WAT A . E 4 HOH 19 524 21 HOH WAT A . E 4 HOH 20 525 22 HOH WAT A . E 4 HOH 21 526 23 HOH WAT A . E 4 HOH 22 527 24 HOH WAT A . E 4 HOH 23 528 25 HOH WAT A . E 4 HOH 24 529 26 HOH WAT A . E 4 HOH 25 530 27 HOH WAT A . E 4 HOH 26 531 28 HOH WAT A . E 4 HOH 27 532 29 HOH WAT A . E 4 HOH 28 533 30 HOH WAT A . E 4 HOH 29 534 31 HOH WAT A . E 4 HOH 30 535 32 HOH WAT A . E 4 HOH 31 536 33 HOH WAT A . E 4 HOH 32 537 34 HOH WAT A . E 4 HOH 33 538 35 HOH WAT A . E 4 HOH 34 539 36 HOH WAT A . E 4 HOH 35 540 37 HOH WAT A . E 4 HOH 36 541 38 HOH WAT A . E 4 HOH 37 542 39 HOH WAT A . E 4 HOH 38 543 40 HOH WAT A . E 4 HOH 39 544 41 HOH WAT A . E 4 HOH 40 545 42 HOH WAT A . E 4 HOH 41 546 43 HOH WAT A . E 4 HOH 42 547 44 HOH WAT A . E 4 HOH 43 548 45 HOH WAT A . E 4 HOH 44 549 46 HOH WAT A . E 4 HOH 45 550 47 HOH WAT A . E 4 HOH 46 551 48 HOH WAT A . E 4 HOH 47 552 49 HOH WAT A . E 4 HOH 48 553 50 HOH WAT A . E 4 HOH 49 554 51 HOH WAT A . E 4 HOH 50 555 52 HOH WAT A . E 4 HOH 51 556 53 HOH WAT A . E 4 HOH 52 557 54 HOH WAT A . E 4 HOH 53 558 55 HOH WAT A . E 4 HOH 54 559 56 HOH WAT A . E 4 HOH 55 560 57 HOH WAT A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 200 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 200 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-06-13 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' database_PDB_caveat 4 4 'Structure model' entity 5 4 'Structure model' pdbx_branch_scheme 6 4 'Structure model' pdbx_chem_comp_identifier 7 4 'Structure model' pdbx_entity_branch 8 4 'Structure model' pdbx_entity_branch_descriptor 9 4 'Structure model' pdbx_entity_branch_link 10 4 'Structure model' pdbx_entity_branch_list 11 4 'Structure model' pdbx_entity_nonpoly 12 4 'Structure model' pdbx_nonpoly_scheme 13 4 'Structure model' pdbx_struct_assembly_gen 14 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 15 4 'Structure model' pdbx_validate_chiral 16 4 'Structure model' struct_asym 17 4 'Structure model' struct_conn 18 4 'Structure model' struct_site 19 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.auth_asym_id' 2 4 'Structure model' '_atom_site.auth_seq_id' 3 4 'Structure model' '_atom_site.label_asym_id' 4 4 'Structure model' '_atom_site.label_entity_id' 5 4 'Structure model' '_chem_comp.name' 6 4 'Structure model' '_chem_comp.type' 7 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 8 4 'Structure model' '_pdbx_validate_chiral.auth_asym_id' 9 4 'Structure model' '_pdbx_validate_chiral.auth_seq_id' 10 4 'Structure model' '_struct_conn.pdbx_dist_value' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 4 'Structure model' '_struct_conn.pdbx_role' 13 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 14 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 15 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 20 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 21 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 MLPHARE phasing . ? 3 CNS refinement . ? 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CA A CYS 252 ? ? CB A CYS 252 ? ? 1.670 1.535 0.135 0.022 N 2 1 N A VAL 253 ? ? CA A VAL 253 ? ? 1.681 1.459 0.222 0.020 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 252 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 CYS _pdbx_validate_rmsd_angle.auth_seq_id_2 252 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 CYS _pdbx_validate_rmsd_angle.auth_seq_id_3 252 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.06 _pdbx_validate_rmsd_angle.angle_target_value 111.50 _pdbx_validate_rmsd_angle.angle_deviation 11.56 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.20 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 41 ? ? 47.49 -118.47 2 1 THR A 92 ? ? -140.68 48.52 3 1 LYS A 99 ? ? 52.33 -0.08 4 1 LYS A 102 ? ? -163.47 68.94 5 1 ASN A 103 ? ? 52.17 150.13 6 1 ASN A 113 ? ? -162.04 -168.93 7 1 LYS A 195 ? ? 58.15 -95.31 8 1 SER A 295 ? ? -91.10 -158.03 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id TYR _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 114 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.071 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C1 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id B _pdbx_validate_chiral.auth_comp_id MAN _pdbx_validate_chiral.auth_seq_id 3 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 99 ? CG ? A LYS 99 CG 2 1 Y 1 A LYS 99 ? CD ? A LYS 99 CD 3 1 Y 1 A LYS 99 ? CE ? A LYS 99 CE 4 1 Y 1 A LYS 99 ? NZ ? A LYS 99 NZ 5 1 Y 1 A GLU 100 ? CG ? A GLU 100 CG 6 1 Y 1 A GLU 100 ? CD ? A GLU 100 CD 7 1 Y 1 A GLU 100 ? OE1 ? A GLU 100 OE1 8 1 Y 1 A GLU 100 ? OE2 ? A GLU 100 OE2 9 1 Y 1 A LYS 102 ? CG ? A LYS 102 CG 10 1 Y 1 A LYS 102 ? CD ? A LYS 102 CD 11 1 Y 1 A LYS 102 ? CE ? A LYS 102 CE 12 1 Y 1 A LYS 102 ? NZ ? A LYS 102 NZ 13 1 Y 1 A ASN 103 ? CG ? A ASN 103 CG 14 1 Y 1 A ASN 103 ? OD1 ? A ASN 103 OD1 15 1 Y 1 A ASN 103 ? ND2 ? A ASN 103 ND2 16 1 Y 1 A LYS 104 ? CG ? A LYS 104 CG 17 1 Y 1 A LYS 104 ? CD ? A LYS 104 CD 18 1 Y 1 A LYS 104 ? CE ? A LYS 104 CE 19 1 Y 1 A LYS 104 ? NZ ? A LYS 104 NZ 20 1 Y 1 A LYS 135 ? CG ? A LYS 135 CG 21 1 Y 1 A LYS 135 ? CD ? A LYS 135 CD 22 1 Y 1 A LYS 135 ? CE ? A LYS 135 CE 23 1 Y 1 A LYS 135 ? NZ ? A LYS 135 NZ 24 1 Y 1 A LYS 225 ? CG ? A LYS 225 CG 25 1 Y 1 A LYS 225 ? CD ? A LYS 225 CD 26 1 Y 1 A LYS 225 ? CE ? A LYS 225 CE 27 1 Y 1 A LYS 225 ? NZ ? A LYS 225 NZ 28 1 Y 1 A ARG 279 ? CG ? A ARG 279 CG 29 1 Y 1 A ARG 279 ? CD ? A ARG 279 CD 30 1 Y 1 A ARG 279 ? NE ? A ARG 279 NE 31 1 Y 1 A ARG 279 ? CZ ? A ARG 279 CZ 32 1 Y 1 A ARG 279 ? NH1 ? A ARG 279 NH1 33 1 Y 1 A ARG 279 ? NH2 ? A ARG 279 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 140 ? A SER 140 2 1 Y 1 A SER 141 ? A SER 141 3 1 Y 1 A ASP 142 ? A ASP 142 4 1 Y 1 A PRO 143 ? A PRO 143 5 1 Y 1 A GLN 144 ? A GLN 144 6 1 Y 1 A GLU 262 ? A GLU 262 7 1 Y 1 A LYS 263 ? A LYS 263 8 1 Y 1 A LYS 264 ? A LYS 264 9 1 Y 1 A ASP 265 ? A ASP 265 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 A NAG 501 n B 2 NAG 2 B NAG 2 A NAG 502 n B 2 MAN 3 B MAN 3 A MAN 503 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DManpa1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1a_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 MAN C1 O1 2 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 MAN 3 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 '5-MERCAPTO-2-NITRO-BENZOIC ACID' MNB 4 water HOH #