data_1F7Y # _entry.id 1F7Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1F7Y pdb_00001f7y 10.2210/pdb1f7y/pdb NDB RR0010 ? ? RCSB RCSB011353 ? ? WWPDB D_1000011353 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1F7Y _pdbx_database_status.recvd_initial_deposition_date 2000-06-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ennifar, E.' 1 'Nikouline, A.' 2 'Serganov, A.' 3 'Tishchenko, S.' 4 'Nevskaya, N.' 5 'Garber, M.' 6 'Ehresmann, B.' 7 'Ehresmann, C.' 8 'Nikonov, S.' 9 'Dumas, P.' 10 # _citation.id primary _citation.title 'The crystal structure of UUCG tetraloop.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 304 _citation.page_first 35 _citation.page_last 42 _citation.year 2000 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11071808 _citation.pdbx_database_id_DOI 10.1006/jmbi.2000.4204 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ennifar, E.' 1 ? primary 'Nikulin, A.' 2 ? primary 'Tishchenko, S.' 3 ? primary 'Serganov, A.' 4 ? primary 'Nevskaya, N.' 5 ? primary 'Garber, M.' 6 ? primary 'Ehresmann, B.' 7 ? primary 'Ehresmann, C.' 8 ? primary 'Nikonov, S.' 9 ? primary 'Dumas, P.' 10 ? # _cell.entry_id 1F7Y _cell.length_a 128.800 _cell.length_b 128.800 _cell.length_c 65.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1F7Y _symmetry.space_group_name_H-M 'P 64 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting hexagonal _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '16S RIBOSOMAL RNA FRAGMENT' 18464.963 1 ? ? '57 RESIDUES' ? 2 polymer man '30S RIBOSOMAL PROTEIN S15' 10844.145 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 9 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 5 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 6 water nat water 18.015 27 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGGCGGCCUUCGGGCUAGACGGUGGGAGAGGCUUCGGCUGGUCCACCCGUGACGCUC GGGCGGCCUUCGGGCUAGACGGUGGGAGAGGCUUCGGCUGGUCCACCCGUGACGCUC B ? 2 'polypeptide(L)' no yes ;MPITKEEKQKV(MSE)QEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLL(MSE)(MSE)VGQRRRLLR YLQREDPERYR(MSE)LIEKLGIRG ; ;MPITKEEKQKVMQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRM LIEKLGIRG ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 C n 1 5 G n 1 6 G n 1 7 C n 1 8 C n 1 9 U n 1 10 U n 1 11 C n 1 12 G n 1 13 G n 1 14 G n 1 15 C n 1 16 U n 1 17 A n 1 18 G n 1 19 A n 1 20 C n 1 21 G n 1 22 G n 1 23 U n 1 24 G n 1 25 G n 1 26 G n 1 27 A n 1 28 G n 1 29 A n 1 30 G n 1 31 G n 1 32 C n 1 33 U n 1 34 U n 1 35 C n 1 36 G n 1 37 G n 1 38 C n 1 39 U n 1 40 G n 1 41 G n 1 42 U n 1 43 C n 1 44 C n 1 45 A n 1 46 C n 1 47 C n 1 48 C n 1 49 G n 1 50 U n 1 51 G n 1 52 A n 1 53 C n 1 54 G n 1 55 C n 1 56 U n 1 57 C n 2 1 MET n 2 2 PRO n 2 3 ILE n 2 4 THR n 2 5 LYS n 2 6 GLU n 2 7 GLU n 2 8 LYS n 2 9 GLN n 2 10 LYS n 2 11 VAL n 2 12 MSE n 2 13 GLN n 2 14 GLU n 2 15 PHE n 2 16 ALA n 2 17 ARG n 2 18 PHE n 2 19 PRO n 2 20 GLY n 2 21 ASP n 2 22 THR n 2 23 GLY n 2 24 SER n 2 25 THR n 2 26 GLU n 2 27 VAL n 2 28 GLN n 2 29 VAL n 2 30 ALA n 2 31 LEU n 2 32 LEU n 2 33 THR n 2 34 LEU n 2 35 ARG n 2 36 ILE n 2 37 ASN n 2 38 ARG n 2 39 LEU n 2 40 SER n 2 41 GLU n 2 42 HIS n 2 43 LEU n 2 44 LYS n 2 45 VAL n 2 46 HIS n 2 47 LYS n 2 48 LYS n 2 49 ASP n 2 50 HIS n 2 51 HIS n 2 52 SER n 2 53 HIS n 2 54 ARG n 2 55 GLY n 2 56 LEU n 2 57 LEU n 2 58 MSE n 2 59 MSE n 2 60 VAL n 2 61 GLY n 2 62 GLN n 2 63 ARG n 2 64 ARG n 2 65 ARG n 2 66 LEU n 2 67 LEU n 2 68 ARG n 2 69 TYR n 2 70 LEU n 2 71 GLN n 2 72 ARG n 2 73 GLU n 2 74 ASP n 2 75 PRO n 2 76 GLU n 2 77 ARG n 2 78 TYR n 2 79 ARG n 2 80 MSE n 2 81 LEU n 2 82 ILE n 2 83 GLU n 2 84 LYS n 2 85 LEU n 2 86 GLY n 2 87 ILE n 2 88 ARG n 2 89 GLY n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 274 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'SEQUENCE OCCURS NATURALLY IN THERMUS THERMOPHILUS' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP RS15_THETH 2 ? ? P80378 ? 2 PDB 1F7Y 1 ? ? 1F7Y ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1F7Y A 1 ? 89 ? P80378 1 ? 89 ? 0 88 2 2 1F7Y B 1 ? 57 ? 1F7Y 1 ? 57 ? 1 57 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1F7Y MSE A 12 ? UNP P80378 ILE 12 'engineered mutation' 11 1 1 1F7Y MSE A 58 ? UNP P80378 MET 58 'engineered mutation' 57 2 1 1F7Y MSE A 59 ? UNP P80378 MET 59 'engineered mutation' 58 3 1 1F7Y MSE A 80 ? UNP P80378 ALA 80 'engineered mutation' 79 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1F7Y _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 53.74 _exptl_crystal.density_Matthews 2.66 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.pdbx_details '1 M (NH4)2SO4, 100 MM SODIUM CACODYLATE, 30 MM KCL, 1.5 MM MGCL2, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'SODIUM CACODYLATE' ? ? ? 1 2 1 KCL ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 1 '(NH4)2SO4' ? ? ? 1 5 2 KCL ? ? ? 1 6 2 MGCL2 ? ? ? 1 7 2 '(NH4)2SO4' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1999-10-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.94654 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE BW7A' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline BW7A _diffrn_source.pdbx_wavelength 0.94654 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1F7Y _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 2.8 _reflns.number_obs 8164 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.0380000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.1 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.90 _reflns_shell.percent_possible_all 99.5 _reflns_shell.Rmerge_I_obs 0.2090000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 8.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1F7Y _refine.ls_number_reflns_obs 7679 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 578374.93 _refine.pdbx_data_cutoff_low_absF 0.00 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.00 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 98.1 _refine.ls_R_factor_obs 0.2220000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2220000 _refine.ls_R_factor_R_free 0.2890000 _refine.ls_R_factor_R_free_error 0.011 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.3 _refine.ls_number_reflns_R_free 640 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 61.5 _refine.aniso_B[1][1] -5.97 _refine.aniso_B[2][2] -5.97 _refine.aniso_B[3][3] 11.95 _refine.aniso_B[1][2] 2.60 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.420 _refine.solvent_model_param_bsol 85.64 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1F7Y _refine_analyze.Luzzati_coordinate_error_obs 0.36 _refine_analyze.Luzzati_sigma_a_obs 0.28 _refine_analyze.Luzzati_d_res_low_obs 8.00 _refine_analyze.Luzzati_coordinate_error_free 0.50 _refine_analyze.Luzzati_sigma_a_free 0.37 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 721 _refine_hist.pdbx_number_atoms_nucleic_acid 1221 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 27 _refine_hist.number_atoms_total 1981 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 8.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 16.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.97 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 4.34 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 6.73 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 6.69 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 9.17 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.97 _refine_ls_shell.number_reflns_R_work 1078 _refine_ls_shell.R_factor_R_work 0.3460000 _refine_ls_shell.percent_reflns_obs 92.3 _refine_ls_shell.R_factor_R_free 0.4420000 _refine_ls_shell.R_factor_R_free_error 0.044 _refine_ls_shell.percent_reflns_R_free 8.6 _refine_ls_shell.number_reflns_R_free 101 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 LUC.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARA WATER.TOP 'X-RAY DIFFRACTION' 3 ION2.PARAM ION.TOP 'X-RAY DIFFRACTION' 4 PROTEIN_REP.PA ? 'X-RAY DIFFRACTION' # _struct.entry_id 1F7Y _struct.title ;THE CRYSTAL STRUCTURE OF TWO UUCG LOOPS HIGHLIGHTS THE ROLE PLAYED BY 2'-HYDROXYL GROUPS IN ITS UNUSUAL STABILITY ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1F7Y _struct_keywords.pdbx_keywords RIBOSOME _struct_keywords.text 'UUCG, TETRALOOP, RNA, RIBOSOME' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 4 ? M N N 4 ? N N N 5 ? O N N 6 ? P N N 6 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR B 4 ? ALA B 16 ? THR A 3 ALA A 15 1 ? 13 HELX_P HELX_P2 2 THR B 25 ? HIS B 46 ? THR A 24 HIS A 45 1 ? 22 HELX_P HELX_P3 3 HIS B 50 ? ASP B 74 ? HIS A 49 ASP A 73 1 ? 25 HELX_P HELX_P4 4 ASP B 74 ? ILE B 82 ? ASP A 73 ILE A 81 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B VAL 11 C ? ? ? 1_555 B MSE 12 N ? ? A VAL 10 A MSE 11 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale2 covale both ? B MSE 12 C ? ? ? 1_555 B GLN 13 N ? ? A MSE 11 A GLN 12 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale3 covale both ? B LEU 57 C ? ? ? 1_555 B MSE 58 N ? ? A LEU 56 A MSE 57 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? B MSE 58 C ? ? ? 1_555 B MSE 59 N ? ? A MSE 57 A MSE 58 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale5 covale both ? B MSE 59 C ? ? ? 1_555 B VAL 60 N ? ? A MSE 58 A VAL 59 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale6 covale both ? B ARG 79 C ? ? ? 1_555 B MSE 80 N ? ? A ARG 78 A MSE 79 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale7 covale both ? B MSE 80 C ? ? ? 1_555 B LEU 81 N ? ? A MSE 79 A LEU 80 1_555 ? ? ? ? ? ? ? 1.329 ? ? metalc1 metalc ? ? A G 49 N7 ? ? ? 1_555 E MG . MG ? ? B G 49 B MG 1003 1_555 ? ? ? ? ? ? ? 3.095 ? ? metalc2 metalc ? ? L NA . NA ? ? ? 1_555 O HOH . O ? ? B NA 1010 B HOH 1026 1_555 ? ? ? ? ? ? ? 2.909 ? ? metalc3 metalc ? ? B HIS 51 NE2 ? ? ? 1_555 N K . K ? ? A HIS 50 A K 1012 1_555 ? ? ? ? ? ? ? 3.089 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 57 N3 ? ? B G 1 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 57 O2 ? ? B G 1 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 57 N4 ? ? B G 1 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A U 56 O2 ? ? B G 2 B U 56 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A U 56 N3 ? ? B G 2 B U 56 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 55 N3 ? ? B G 3 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 55 O2 ? ? B G 3 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 55 N4 ? ? B G 3 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 54 N1 ? ? B C 4 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 54 O6 ? ? B C 4 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 54 N2 ? ? B C 4 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 15 N3 ? ? B G 6 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 15 O2 ? ? B G 6 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 15 N4 ? ? B G 6 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 14 N1 ? ? B C 7 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 14 O6 ? ? B C 7 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 14 N2 ? ? B C 7 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 13 N1 ? ? B C 8 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 13 O6 ? ? B C 8 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 13 N2 ? ? B C 8 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 9 O2 ? ? ? 1_555 A G 12 N1 ? ? B U 9 B G 12 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog22 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 52 N7 ? ? B U 16 B A 52 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog23 hydrog ? ? A U 16 O2 ? ? ? 1_555 A A 52 N6 ? ? B U 16 B A 52 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog24 hydrog ? ? A G 18 O6 ? ? ? 1_555 A G 51 N2 ? ? B G 18 B G 51 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog25 hydrog ? ? A G 18 N1 ? ? ? 1_555 A C 53 N3 ? ? B G 18 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 18 N2 ? ? ? 1_555 A C 53 O2 ? ? B G 18 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 18 O6 ? ? ? 1_555 A C 53 N4 ? ? B G 18 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 19 N1 ? ? ? 1_555 A U 50 N3 ? ? B A 19 B U 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A A 19 N6 ? ? ? 1_555 A U 50 O4 ? ? B A 19 B U 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 49 N1 ? ? B C 20 B G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 49 O6 ? ? B C 20 B G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 49 N2 ? ? B C 20 B G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 21 N1 ? ? ? 1_555 A C 48 N3 ? ? B G 21 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 21 N2 ? ? ? 1_555 A C 48 O2 ? ? B G 21 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 21 O6 ? ? ? 1_555 A C 48 N4 ? ? B G 21 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 46 N3 ? ? B G 22 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 46 O2 ? ? B G 22 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 46 N4 ? ? B G 22 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 23 N3 ? ? ? 1_555 A A 45 N1 ? ? B U 23 B A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 23 O4 ? ? ? 1_555 A A 45 N6 ? ? B U 23 B A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 44 N3 ? ? B G 24 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 44 O2 ? ? B G 24 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 44 N4 ? ? B G 24 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 43 N3 ? ? B G 25 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 43 O2 ? ? B G 25 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 43 N4 ? ? B G 25 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 26 N1 ? ? ? 1_555 A U 42 O2 ? ? B G 26 B U 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog48 hydrog ? ? A G 26 O6 ? ? ? 1_555 A U 42 N3 ? ? B G 26 B U 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog49 hydrog ? ? A A 27 N1 A ? ? 1_555 A G 41 N1 ? ? B A 27 B G 41 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog50 hydrog ? ? A A 27 N6 A ? ? 1_555 A G 41 O6 ? ? B A 27 B G 41 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog51 hydrog ? ? A G 28 N2 A ? ? 1_555 A G 40 O6 ? ? B G 28 B G 40 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog52 hydrog ? ? A G 30 N1 ? ? ? 1_555 A U 39 O2 ? ? B G 30 B U 39 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog53 hydrog ? ? A G 30 O6 ? ? ? 1_555 A U 39 N3 ? ? B G 30 B U 39 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog54 hydrog ? ? A G 31 N1 ? ? ? 1_555 A C 38 N3 ? ? B G 31 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 31 N2 ? ? ? 1_555 A C 38 O2 ? ? B G 31 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 31 O6 ? ? ? 1_555 A C 38 N4 ? ? B G 31 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 32 N3 ? ? ? 1_555 A G 37 N1 ? ? B C 32 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 32 N4 ? ? ? 1_555 A G 37 O6 ? ? B C 32 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 32 O2 ? ? ? 1_555 A G 37 N2 ? ? B C 32 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A U 33 O2 ? ? ? 1_555 A G 36 N1 ? ? B U 33 B G 36 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog61 hydrog ? ? A G 51 N3 ? ? ? 1_555 A C 53 N4 ? ? B G 51 B C 53 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B MG 1002 ? 1 'BINDING SITE FOR RESIDUE MG B 1002' AC2 Software B MG 1003 ? 2 'BINDING SITE FOR RESIDUE MG B 1003' AC3 Software B MG 1006 ? 1 'BINDING SITE FOR RESIDUE MG B 1006' AC4 Software B MG 1008 ? 1 'BINDING SITE FOR RESIDUE MG B 1008' AC5 Software B MG 1009 ? 1 'BINDING SITE FOR RESIDUE MG B 1009' AC6 Software B NA 1010 ? 1 'BINDING SITE FOR RESIDUE NA B 1010' AC7 Software B NA 1011 ? 1 'BINDING SITE FOR RESIDUE NA B 1011' AC8 Software A K 1012 ? 1 'BINDING SITE FOR RESIDUE K A 1012' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 G A 26 ? G B 26 . ? 1_555 ? 2 AC2 2 C A 48 ? C B 48 . ? 1_555 ? 3 AC2 2 G A 49 ? G B 49 . ? 1_555 ? 4 AC3 1 U A 39 ? U B 39 . ? 1_555 ? 5 AC4 1 G A 21 ? G B 21 . ? 1_555 ? 6 AC5 1 A A 52 ? A B 52 . ? 1_555 ? 7 AC6 1 HOH O . ? HOH B 1026 . ? 1_555 ? 8 AC7 1 LEU B 57 ? LEU A 56 . ? 11_556 ? 9 AC8 1 HIS B 51 ? HIS A 50 . ? 1_555 ? # _database_PDB_matrix.entry_id 1F7Y _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1F7Y _atom_sites.fract_transf_matrix[1][1] 0.007764 _atom_sites.fract_transf_matrix[1][2] 0.004483 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008965 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015361 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K MG N NA O P SE # loop_ _database_PDB_caveat.text ;INCORRECT CHIRAL CARBON ATOM C3' G 5 B ; # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G B . n A 1 2 G 2 2 2 G G B . n A 1 3 G 3 3 3 G G B . n A 1 4 C 4 4 4 C C B . n A 1 5 G 5 5 5 G G B . n A 1 6 G 6 6 6 G G B . n A 1 7 C 7 7 7 C C B . n A 1 8 C 8 8 8 C C B . n A 1 9 U 9 9 9 U U B . n A 1 10 U 10 10 10 U U B . n A 1 11 C 11 11 11 C C B . n A 1 12 G 12 12 12 G G B . n A 1 13 G 13 13 13 G G B . n A 1 14 G 14 14 14 G G B . n A 1 15 C 15 15 15 C C B . n A 1 16 U 16 16 16 U U B . n A 1 17 A 17 17 17 A A B . n A 1 18 G 18 18 18 G G B . n A 1 19 A 19 19 19 A A B . n A 1 20 C 20 20 20 C C B . n A 1 21 G 21 21 21 G G B . n A 1 22 G 22 22 22 G G B . n A 1 23 U 23 23 23 U U B . n A 1 24 G 24 24 24 G G B . n A 1 25 G 25 25 25 G G B . n A 1 26 G 26 26 26 G G B . n A 1 27 A 27 27 27 A A B . n A 1 28 G 28 28 28 G G B . n A 1 29 A 29 29 29 A A B . n A 1 30 G 30 30 30 G G B . n A 1 31 G 31 31 31 G G B . n A 1 32 C 32 32 32 C C B . n A 1 33 U 33 33 33 U U B . n A 1 34 U 34 34 34 U U B . n A 1 35 C 35 35 35 C C B . n A 1 36 G 36 36 36 G G B . n A 1 37 G 37 37 37 G G B . n A 1 38 C 38 38 38 C C B . n A 1 39 U 39 39 39 U U B . n A 1 40 G 40 40 40 G G B . n A 1 41 G 41 41 41 G G B . n A 1 42 U 42 42 42 U U B . n A 1 43 C 43 43 43 C C B . n A 1 44 C 44 44 44 C C B . n A 1 45 A 45 45 45 A A B . n A 1 46 C 46 46 46 C C B . n A 1 47 C 47 47 47 C C B . n A 1 48 C 48 48 48 C C B . n A 1 49 G 49 49 49 G G B . n A 1 50 U 50 50 50 U U B . n A 1 51 G 51 51 51 G G B . n A 1 52 A 52 52 52 A A B . n A 1 53 C 53 53 53 C C B . n A 1 54 G 54 54 54 G G B . n A 1 55 C 55 55 55 C C B . n A 1 56 U 56 56 56 U U B . n A 1 57 C 57 57 57 C C B . n B 2 1 MET 1 0 ? ? ? A . n B 2 2 PRO 2 1 1 PRO PRO A . n B 2 3 ILE 3 2 2 ILE ILE A . n B 2 4 THR 4 3 3 THR THR A . n B 2 5 LYS 5 4 4 LYS LYS A . n B 2 6 GLU 6 5 5 GLU GLU A . n B 2 7 GLU 7 6 6 GLU GLU A . n B 2 8 LYS 8 7 7 LYS LYS A . n B 2 9 GLN 9 8 8 GLN GLN A . n B 2 10 LYS 10 9 9 LYS LYS A . n B 2 11 VAL 11 10 10 VAL VAL A . n B 2 12 MSE 12 11 11 MSE MSE A . n B 2 13 GLN 13 12 12 GLN GLN A . n B 2 14 GLU 14 13 13 GLU GLU A . n B 2 15 PHE 15 14 14 PHE PHE A . n B 2 16 ALA 16 15 15 ALA ALA A . n B 2 17 ARG 17 16 16 ARG ARG A . n B 2 18 PHE 18 17 17 PHE PHE A . n B 2 19 PRO 19 18 18 PRO PRO A . n B 2 20 GLY 20 19 19 GLY GLY A . n B 2 21 ASP 21 20 20 ASP ASP A . n B 2 22 THR 22 21 21 THR THR A . n B 2 23 GLY 23 22 22 GLY GLY A . n B 2 24 SER 24 23 23 SER SER A . n B 2 25 THR 25 24 24 THR THR A . n B 2 26 GLU 26 25 25 GLU GLU A . n B 2 27 VAL 27 26 26 VAL VAL A . n B 2 28 GLN 28 27 27 GLN GLN A . n B 2 29 VAL 29 28 28 VAL VAL A . n B 2 30 ALA 30 29 29 ALA ALA A . n B 2 31 LEU 31 30 30 LEU LEU A . n B 2 32 LEU 32 31 31 LEU LEU A . n B 2 33 THR 33 32 32 THR THR A . n B 2 34 LEU 34 33 33 LEU LEU A . n B 2 35 ARG 35 34 34 ARG ARG A . n B 2 36 ILE 36 35 35 ILE ILE A . n B 2 37 ASN 37 36 36 ASN ASN A . n B 2 38 ARG 38 37 37 ARG ARG A . n B 2 39 LEU 39 38 38 LEU LEU A . n B 2 40 SER 40 39 39 SER SER A . n B 2 41 GLU 41 40 40 GLU GLU A . n B 2 42 HIS 42 41 41 HIS HIS A . n B 2 43 LEU 43 42 42 LEU LEU A . n B 2 44 LYS 44 43 43 LYS LYS A . n B 2 45 VAL 45 44 44 VAL VAL A . n B 2 46 HIS 46 45 45 HIS HIS A . n B 2 47 LYS 47 46 46 LYS LYS A . n B 2 48 LYS 48 47 47 LYS LYS A . n B 2 49 ASP 49 48 48 ASP ASP A . n B 2 50 HIS 50 49 49 HIS HIS A . n B 2 51 HIS 51 50 50 HIS HIS A . n B 2 52 SER 52 51 51 SER SER A . n B 2 53 HIS 53 52 52 HIS HIS A . n B 2 54 ARG 54 53 53 ARG ARG A . n B 2 55 GLY 55 54 54 GLY GLY A . n B 2 56 LEU 56 55 55 LEU LEU A . n B 2 57 LEU 57 56 56 LEU LEU A . n B 2 58 MSE 58 57 57 MSE MSE A . n B 2 59 MSE 59 58 58 MSE MSE A . n B 2 60 VAL 60 59 59 VAL VAL A . n B 2 61 GLY 61 60 60 GLY GLY A . n B 2 62 GLN 62 61 61 GLN GLN A . n B 2 63 ARG 63 62 62 ARG ARG A . n B 2 64 ARG 64 63 63 ARG ARG A . n B 2 65 ARG 65 64 64 ARG ARG A . n B 2 66 LEU 66 65 65 LEU LEU A . n B 2 67 LEU 67 66 66 LEU LEU A . n B 2 68 ARG 68 67 67 ARG ARG A . n B 2 69 TYR 69 68 68 TYR TYR A . n B 2 70 LEU 70 69 69 LEU LEU A . n B 2 71 GLN 71 70 70 GLN GLN A . n B 2 72 ARG 72 71 71 ARG ARG A . n B 2 73 GLU 73 72 72 GLU GLU A . n B 2 74 ASP 74 73 73 ASP ASP A . n B 2 75 PRO 75 74 74 PRO PRO A . n B 2 76 GLU 76 75 75 GLU GLU A . n B 2 77 ARG 77 76 76 ARG ARG A . n B 2 78 TYR 78 77 77 TYR TYR A . n B 2 79 ARG 79 78 78 ARG ARG A . n B 2 80 MSE 80 79 79 MSE MSE A . n B 2 81 LEU 81 80 80 LEU LEU A . n B 2 82 ILE 82 81 81 ILE ILE A . n B 2 83 GLU 83 82 82 GLU GLU A . n B 2 84 LYS 84 83 83 LYS LYS A . n B 2 85 LEU 85 84 84 LEU LEU A . n B 2 86 GLY 86 85 85 GLY GLY A . n B 2 87 ILE 87 86 86 ILE ILE A . n B 2 88 ARG 88 87 ? ? ? A . n B 2 89 GLY 89 88 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 1001 1001 MG MG B . D 3 MG 1 1002 1002 MG MG B . E 3 MG 1 1003 1003 MG MG B . F 3 MG 1 1004 1004 MG MG B . G 3 MG 1 1005 1005 MG MG B . H 3 MG 1 1006 1006 MG MG B . I 3 MG 1 1007 1007 MG MG B . J 3 MG 1 1008 1008 MG MG B . K 3 MG 1 1009 1009 MG MG B . L 4 NA 1 1010 1010 NA NA B . M 4 NA 1 1011 1011 NA NA B . N 5 K 1 1012 1012 K K A . O 6 HOH 1 1012 2 HOH HOH B . O 6 HOH 2 1013 6 HOH HOH B . O 6 HOH 3 1014 8 HOH HOH B . O 6 HOH 4 1015 9 HOH HOH B . O 6 HOH 5 1016 10 HOH HOH B . O 6 HOH 6 1017 11 HOH HOH B . O 6 HOH 7 1018 12 HOH HOH B . O 6 HOH 8 1019 13 HOH HOH B . O 6 HOH 9 1020 14 HOH HOH B . O 6 HOH 10 1021 15 HOH HOH B . O 6 HOH 11 1022 16 HOH HOH B . O 6 HOH 12 1023 17 HOH HOH B . O 6 HOH 13 1024 18 HOH HOH B . O 6 HOH 14 1025 19 HOH HOH B . O 6 HOH 15 1026 20 HOH HOH B . O 6 HOH 16 1027 23 HOH HOH B . O 6 HOH 17 1028 24 HOH HOH B . O 6 HOH 18 1029 25 HOH HOH B . O 6 HOH 19 1030 26 HOH HOH B . O 6 HOH 20 1031 27 HOH HOH B . P 6 HOH 1 1013 1 HOH HOH A . P 6 HOH 2 1014 3 HOH HOH A . P 6 HOH 3 1015 4 HOH HOH A . P 6 HOH 4 1016 5 HOH HOH A . P 6 HOH 5 1017 7 HOH HOH A . P 6 HOH 6 1018 21 HOH HOH A . P 6 HOH 7 1019 22 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B MSE 12 A MSE 11 ? MET SELENOMETHIONINE 2 B MSE 58 A MSE 57 ? MET SELENOMETHIONINE 3 B MSE 59 A MSE 58 ? MET SELENOMETHIONINE 4 B MSE 80 A MSE 79 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 1012 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id O _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-11-22 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-12-28 5 'Structure model' 1 4 2021-11-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' database_2 2 5 'Structure model' diffrn_source 3 5 'Structure model' struct_conn 4 5 'Structure model' struct_ref_seq_dif 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 5 'Structure model' '_struct_conn.pdbx_dist_value' 5 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 7 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 8 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 9 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 10 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 11 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 12 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 13 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 14 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 15 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 16 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 17 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 18 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 19 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 20 5 'Structure model' '_struct_ref_seq_dif.details' 21 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 22 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 23 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHARP phasing . ? 1 CNS refinement 0.4 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "O2'" _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 A _pdbx_validate_symm_contact.auth_seq_id_1 29 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 A _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OP1 _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 A _pdbx_validate_symm_contact.auth_seq_id_2 45 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 11_556 _pdbx_validate_symm_contact.dist 2.05 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C4'" B G 5 ? ? "C3'" B G 5 ? ? "O3'" B G 5 ? ? 125.86 113.00 12.86 2.00 N 2 1 "C2'" B G 5 ? ? "C3'" B G 5 ? ? "O3'" B G 5 ? ? 126.77 113.70 13.07 1.60 N 3 1 "C2'" B A 52 ? ? "C3'" B A 52 ? ? "O3'" B A 52 ? ? 129.51 113.70 15.81 1.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 2 ? ? 75.66 -71.23 2 1 THR A 3 ? ? 76.44 163.80 3 1 GLU A 5 ? ? -66.63 21.70 4 1 GLU A 6 ? ? -148.17 -67.93 5 1 PRO A 18 ? ? -51.76 80.91 6 1 THR A 21 ? ? -140.64 -0.02 7 1 SER A 23 ? ? -86.87 37.03 8 1 THR A 24 ? ? 71.25 -59.26 9 1 ALA A 29 ? ? -49.64 -72.68 10 1 LEU A 42 ? ? -39.20 -30.90 11 1 HIS A 45 ? ? -116.74 79.89 12 1 HIS A 49 ? ? 61.40 -69.22 13 1 ASP A 73 ? ? -151.12 71.53 14 1 ILE A 81 ? ? -58.15 -1.64 15 1 LYS A 83 ? ? 59.65 4.27 16 1 LEU A 84 ? ? -155.14 -44.57 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id U _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 16 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.065 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 "C3'" ? B G 5 ? PLANAR . 2 1 "C3'" ? B A 52 ? PLANAR . # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 "O3'" B G 26 ? ? P B A 27 ? B 2.66 2 1 "O3'" B A 29 ? A P B G 30 ? ? 2.20 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 0 ? B MET 1 2 1 Y 1 A ARG 87 ? B ARG 88 3 1 Y 1 A GLY 88 ? B GLY 89 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1F7Y 'double helix' 1F7Y 'a-form double helix' 1F7Y tetraloop 1F7Y 'bulge loop' 1F7Y 'mismatched base pair' 1F7Y 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 57 1_555 0.572 -0.028 -0.409 0.193 1.208 -6.764 1 B_G1:C57_B B 1 ? B 57 ? 19 1 1 A G 2 1_555 A U 56 1_555 -1.958 -0.762 0.243 1.085 -15.868 -0.959 2 B_G2:U56_B B 2 ? B 56 ? 28 1 1 A G 3 1_555 A C 55 1_555 -0.092 -0.255 0.252 2.509 -4.500 -4.565 3 B_G3:C55_B B 3 ? B 55 ? 19 1 1 A C 4 1_555 A G 54 1_555 -0.041 -0.183 0.181 -0.754 -4.116 -2.702 4 B_C4:G54_B B 4 ? B 54 ? 19 1 1 A G 12 1_555 A U 9 1_555 -0.760 5.242 0.619 13.806 3.783 103.597 5 B_G12:U9_B B 12 ? B 9 ? ? 2 1 A G 13 1_555 A C 8 1_555 0.297 -0.085 -0.431 -8.436 -7.514 6.198 6 B_G13:C8_B B 13 ? B 8 ? 19 1 1 A G 14 1_555 A C 7 1_555 0.188 -0.175 -0.252 -17.078 -9.471 3.978 7 B_G14:C7_B B 14 ? B 7 ? 19 1 1 A C 15 1_555 A G 6 1_555 -0.105 -0.437 0.004 -14.740 -11.070 -1.930 8 B_C15:G6_B B 15 ? B 6 ? 19 1 1 A A 52 1_555 A U 16 1_555 -3.979 -1.659 0.063 -1.611 6.182 -104.524 9 B_A52:U16_B B 52 ? B 16 ? 24 4 1 A G 18 1_555 A C 53 1_555 0.120 -0.264 -0.187 8.313 0.795 -5.126 10 B_G18:C53_B B 18 ? B 53 ? 19 1 1 A A 19 1_555 A U 50 1_555 0.303 -0.234 0.298 6.905 -6.249 -4.897 11 B_A19:U50_B B 19 ? B 50 ? 20 1 1 A C 20 1_555 A G 49 1_555 0.412 -0.312 0.399 6.638 -0.926 0.717 12 B_C20:G49_B B 20 ? B 49 ? 19 1 1 A G 21 1_555 A C 48 1_555 -0.301 -0.177 -0.037 -1.672 -9.138 -0.407 13 B_G21:C48_B B 21 ? B 48 ? 19 1 1 A G 22 1_555 A C 46 1_555 -0.721 -0.414 -0.161 -5.959 -10.118 -7.562 14 B_G22:C46_B B 22 ? B 46 ? 19 1 1 A U 23 1_555 A A 45 1_555 -0.930 -0.542 -0.045 -4.432 -8.991 3.206 15 B_U23:A45_B B 23 ? B 45 ? 20 1 1 A G 24 1_555 A C 44 1_555 -0.566 -0.617 -0.117 -1.515 -7.485 0.390 16 B_G24:C44_B B 24 ? B 44 ? 19 1 1 A G 25 1_555 A C 43 1_555 -0.760 -0.224 0.097 -2.753 -14.135 0.221 17 B_G25:C43_B B 25 ? B 43 ? 19 1 1 A G 26 1_555 A U 42 1_555 -1.930 -0.447 0.076 -11.524 -15.268 -3.396 18 B_G26:U42_B B 26 ? B 42 ? 28 1 1 A A 27 1_555 A G 41 1_555 -0.004 1.312 -0.438 -7.007 -7.508 -14.261 19 B_A27:G41_B B 27 ? B 41 ? 8 1 1 A G 28 1_555 A G 40 1_555 4.746 1.783 -0.075 -9.347 4.691 5.371 20 B_G28:G40_B B 28 ? B 40 ? ? ? 1 A G 30 1_555 A U 39 1_555 -3.291 -0.889 -0.693 -10.263 -11.164 -0.356 21 B_G30:U39_B B 30 ? B 39 ? 28 ? 1 A G 31 1_555 A C 38 1_555 0.588 -0.460 -0.113 -2.719 -4.613 -5.853 22 B_G31:C38_B B 31 ? B 38 ? 19 1 1 A C 32 1_555 A G 37 1_555 0.751 -0.545 -0.302 11.069 2.172 2.008 23 B_C32:G37_B B 32 ? B 37 ? 19 1 1 A U 33 1_555 A G 36 1_555 0.601 -5.666 -0.417 -19.011 -5.510 -115.825 24 B_U33:G36_B B 33 ? B 36 ? ? 2 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 57 1_555 A G 2 1_555 A U 56 1_555 0.971 -2.030 3.304 -9.122 7.727 20.649 -7.059 -4.882 1.850 19.580 23.117 23.827 1 BB_G1G2:U56C57_BB B 1 ? B 57 ? B 2 ? B 56 ? 1 A G 2 1_555 A U 56 1_555 A G 3 1_555 A C 55 1_555 -0.423 -1.714 3.084 -3.236 4.494 41.694 -2.818 0.281 2.916 6.281 4.522 42.044 2 BB_G2G3:C55U56_BB B 2 ? B 56 ? B 3 ? B 55 ? 1 A G 3 1_555 A C 55 1_555 A C 4 1_555 A G 54 1_555 0.628 -1.733 3.290 1.809 4.536 34.424 -3.578 -0.782 3.072 7.616 -3.038 34.759 3 BB_G3C4:G54C55_BB B 3 ? B 55 ? B 4 ? B 54 ? 1 A G 12 1_555 A U 9 1_555 A G 13 1_555 A C 8 1_555 -1.946 -3.435 0.247 105.671 -123.867 59.676 -1.392 1.271 1.292 -65.199 -55.621 165.109 4 BB_G12G13:C8U9_BB B 12 ? B 9 ? B 13 ? B 8 ? 1 A G 13 1_555 A C 8 1_555 A G 14 1_555 A C 7 1_555 -0.077 -2.231 3.476 0.460 8.816 29.037 -5.979 0.237 2.697 17.091 -0.893 30.322 5 BB_G13G14:C7C8_BB B 13 ? B 8 ? B 14 ? B 7 ? 1 A G 14 1_555 A C 7 1_555 A C 15 1_555 A G 6 1_555 0.514 -2.176 3.235 3.058 1.355 28.908 -4.623 -0.366 3.169 2.702 -6.101 29.097 6 BB_G14C15:G6C7_BB B 14 ? B 7 ? B 15 ? B 6 ? 1 A C 15 1_555 A G 6 1_555 A A 52 1_555 A U 16 1_555 -0.721 -4.233 -0.914 -139.327 -104.184 24.935 -1.656 -0.259 2.841 -53.507 71.556 174.115 7 BB_C15A52:U16G6_BB B 15 ? B 6 ? B 52 ? B 16 ? 1 A A 52 1_555 A U 16 1_555 A G 18 1_555 A C 53 1_555 -2.387 -2.829 -2.853 163.300 -52.079 -100.812 1.189 -1.906 -1.301 26.339 82.587 -174.524 8 BB_A52G18:C53U16_BB B 52 ? B 16 ? B 18 ? B 53 ? 1 A G 18 1_555 A C 53 1_555 A A 19 1_555 A U 50 1_555 2.435 -1.198 2.907 6.039 5.424 57.218 -1.506 -2.227 3.013 5.632 -6.271 57.743 9 BB_G18A19:U50C53_BB B 18 ? B 53 ? B 19 ? B 50 ? 1 A A 19 1_555 A U 50 1_555 A C 20 1_555 A G 49 1_555 0.641 -1.744 3.312 -2.554 3.351 30.343 -3.948 -1.707 3.044 6.363 4.851 30.627 10 BB_A19C20:G49U50_BB B 19 ? B 50 ? B 20 ? B 49 ? 1 A C 20 1_555 A G 49 1_555 A G 21 1_555 A C 48 1_555 0.449 -2.428 3.268 2.726 4.037 29.130 -5.585 -0.326 2.941 7.955 -5.373 29.526 11 BB_C20G21:C48G49_BB B 20 ? B 49 ? B 21 ? B 48 ? 1 A G 21 1_555 A C 48 1_555 A G 22 1_555 A C 46 1_555 0.994 -1.823 3.311 1.326 11.626 47.472 -3.052 -1.106 2.842 14.191 -1.618 48.812 12 BB_G21G22:C46C48_BB B 21 ? B 48 ? B 22 ? B 46 ? 1 A G 22 1_555 A C 46 1_555 A U 23 1_555 A A 45 1_555 0.848 -1.227 3.371 -2.139 8.797 28.820 -4.090 -2.051 2.814 17.148 4.169 30.180 13 BB_G22U23:A45C46_BB B 22 ? B 46 ? B 23 ? B 45 ? 1 A U 23 1_555 A A 45 1_555 A G 24 1_555 A C 44 1_555 0.581 -1.171 3.120 0.641 8.363 32.534 -3.278 -0.910 2.753 14.627 -1.122 33.569 14 BB_U23G24:C44A45_BB B 23 ? B 45 ? B 24 ? B 44 ? 1 A G 24 1_555 A C 44 1_555 A G 25 1_555 A C 43 1_555 0.741 -2.410 3.245 1.311 6.602 28.037 -6.191 -1.221 2.651 13.383 -2.659 28.818 15 BB_G24G25:C43C44_BB B 24 ? B 44 ? B 25 ? B 43 ? 1 A G 25 1_555 A C 43 1_555 A G 26 1_555 A U 42 1_555 0.513 -1.996 3.290 -0.071 10.518 29.562 -5.489 -0.961 2.452 19.839 0.134 31.339 16 BB_G25G26:U42C43_BB B 25 ? B 43 ? B 26 ? B 42 ? 1 A G 26 1_555 A U 42 1_555 A A 27 1_555 A G 41 1_555 -0.808 -1.676 3.121 5.563 2.558 40.303 -2.668 1.728 2.881 3.687 -8.017 40.746 17 BB_G26A27:G41U42_BB B 26 ? B 42 ? B 27 ? B 41 ? 1 A A 27 1_555 A G 41 1_555 A G 28 1_555 A G 40 1_555 0.898 -1.097 3.631 -1.742 -4.037 36.838 -1.118 -1.673 3.682 -6.360 2.744 37.090 18 BB_A27G28:G40G41_BB B 27 ? B 41 ? B 28 ? B 40 ? 1 A G 28 1_555 A G 40 1_555 A G 30 1_555 A U 39 1_555 -0.957 -3.748 3.535 6.460 6.210 11.676 -18.623 7.878 0.813 26.062 -27.111 14.709 19 BB_G28G30:U39G40_BB B 28 ? B 40 ? B 30 ? B 39 ? 1 A G 30 1_555 A U 39 1_555 A G 31 1_555 A C 38 1_555 -0.794 -1.276 3.062 -6.017 1.846 41.040 -1.987 0.516 3.086 2.615 8.521 41.499 20 BB_G30G31:C38U39_BB B 30 ? B 39 ? B 31 ? B 38 ? 1 A G 31 1_555 A C 38 1_555 A C 32 1_555 A G 37 1_555 0.457 -1.439 3.018 2.263 -2.224 34.252 -2.106 -0.441 3.126 -3.766 -3.832 34.395 21 BB_G31C32:G37C38_BB B 31 ? B 38 ? B 32 ? B 37 ? 1 A C 32 1_555 A G 37 1_555 A U 33 1_555 A G 36 1_555 -2.198 -0.677 3.923 14.986 9.908 92.273 -0.675 1.827 3.552 6.820 -10.315 93.616 22 BB_C32U33:G36G37_BB B 32 ? B 37 ? B 33 ? B 36 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 'SODIUM ION' NA 5 'POTASSIUM ION' K 6 water HOH #