data_1F8Y # _entry.id 1F8Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1F8Y pdb_00001f8y 10.2210/pdb1f8y/pdb RCSB RCSB011389 ? ? WWPDB D_1000011389 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-08-09 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' entity 6 4 'Structure model' pdbx_entity_nonpoly 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.pdbx_synonyms' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_entity.pdbx_description' 6 4 'Structure model' '_pdbx_entity_nonpoly.name' 7 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1F8Y _pdbx_database_status.recvd_initial_deposition_date 2000-07-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1F8X _pdbx_database_related.details '1F8X contains the same protein in the uncomplexed form.' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Armstrong, S.R.' 1 'Cook, W.J.' 2 'Short, S.A.' 3 'Ealick, S.E.' 4 # _citation.id primary _citation.title 'Crystal structures of nucleoside 2-deoxyribosyltransferase in native and ligand-bound forms reveal architecture of the active site.' _citation.journal_abbrev Structure _citation.journal_volume 4 _citation.page_first 97 _citation.page_last 107 _citation.year 1996 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8805514 _citation.pdbx_database_id_DOI '10.1016/S0969-2126(96)00013-5' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Armstrong, S.R.' 1 ? primary 'Cook, W.J.' 2 ? primary 'Short, S.A.' 3 ? primary 'Ealick, S.E.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'NUCLEOSIDE 2-DEOXYRIBOSYLTRANSFERASE' 18098.354 2 2.4.2.6 ? ? ? 2 non-polymer syn "2'-deoxy-1-methyl-pseudouridine" 242.229 2 ? ? ? ? 3 water nat water 18.015 76 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MPKKTIYFGAGWFTDRQNKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTND IMLGVYIPDEEDVGLGMELGYALSQGKYVLLVIPDEDYGKPINLMSWGVSDNVIKMSQLKDFNFNKPRFDFYEGAVY ; _entity_poly.pdbx_seq_one_letter_code_can ;MPKKTIYFGAGWFTDRQNKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTND IMLGVYIPDEEDVGLGMELGYALSQGKYVLLVIPDEDYGKPINLMSWGVSDNVIKMSQLKDFNFNKPRFDFYEGAVY ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "2'-deoxy-1-methyl-pseudouridine" 5MD 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PRO n 1 3 LYS n 1 4 LYS n 1 5 THR n 1 6 ILE n 1 7 TYR n 1 8 PHE n 1 9 GLY n 1 10 ALA n 1 11 GLY n 1 12 TRP n 1 13 PHE n 1 14 THR n 1 15 ASP n 1 16 ARG n 1 17 GLN n 1 18 ASN n 1 19 LYS n 1 20 ALA n 1 21 TYR n 1 22 LYS n 1 23 GLU n 1 24 ALA n 1 25 MET n 1 26 GLU n 1 27 ALA n 1 28 LEU n 1 29 LYS n 1 30 GLU n 1 31 ASN n 1 32 PRO n 1 33 THR n 1 34 ILE n 1 35 ASP n 1 36 LEU n 1 37 GLU n 1 38 ASN n 1 39 SER n 1 40 TYR n 1 41 VAL n 1 42 PRO n 1 43 LEU n 1 44 ASP n 1 45 ASN n 1 46 GLN n 1 47 TYR n 1 48 LYS n 1 49 GLY n 1 50 ILE n 1 51 ARG n 1 52 VAL n 1 53 ASP n 1 54 GLU n 1 55 HIS n 1 56 PRO n 1 57 GLU n 1 58 TYR n 1 59 LEU n 1 60 HIS n 1 61 ASP n 1 62 LYS n 1 63 VAL n 1 64 TRP n 1 65 ALA n 1 66 THR n 1 67 ALA n 1 68 THR n 1 69 TYR n 1 70 ASN n 1 71 ASN n 1 72 ASP n 1 73 LEU n 1 74 ASN n 1 75 GLY n 1 76 ILE n 1 77 LYS n 1 78 THR n 1 79 ASN n 1 80 ASP n 1 81 ILE n 1 82 MET n 1 83 LEU n 1 84 GLY n 1 85 VAL n 1 86 TYR n 1 87 ILE n 1 88 PRO n 1 89 ASP n 1 90 GLU n 1 91 GLU n 1 92 ASP n 1 93 VAL n 1 94 GLY n 1 95 LEU n 1 96 GLY n 1 97 MET n 1 98 GLU n 1 99 LEU n 1 100 GLY n 1 101 TYR n 1 102 ALA n 1 103 LEU n 1 104 SER n 1 105 GLN n 1 106 GLY n 1 107 LYS n 1 108 TYR n 1 109 VAL n 1 110 LEU n 1 111 LEU n 1 112 VAL n 1 113 ILE n 1 114 PRO n 1 115 ASP n 1 116 GLU n 1 117 ASP n 1 118 TYR n 1 119 GLY n 1 120 LYS n 1 121 PRO n 1 122 ILE n 1 123 ASN n 1 124 LEU n 1 125 MET n 1 126 SER n 1 127 TRP n 1 128 GLY n 1 129 VAL n 1 130 SER n 1 131 ASP n 1 132 ASN n 1 133 VAL n 1 134 ILE n 1 135 LYS n 1 136 MET n 1 137 SER n 1 138 GLN n 1 139 LEU n 1 140 LYS n 1 141 ASP n 1 142 PHE n 1 143 ASN n 1 144 PHE n 1 145 ASN n 1 146 LYS n 1 147 PRO n 1 148 ARG n 1 149 PHE n 1 150 ASP n 1 151 PHE n 1 152 TYR n 1 153 GLU n 1 154 GLY n 1 155 ALA n 1 156 VAL n 1 157 TYR n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Lactobacillus leichmannii' _entity_src_nat.pdbx_ncbi_taxonomy_id 28039 _entity_src_nat.genus Lactobacillus _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5MD 'DNA linking' . "2'-deoxy-1-methyl-pseudouridine" "5-METHYL-2'-DEOXYPSEUDOURIDINE" 'C10 H14 N2 O5' 242.229 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 TRP 12 12 12 TRP TRP A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 TYR 21 21 21 TYR TYR A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 MET 25 25 25 MET MET A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 ASN 38 38 38 ASN ASN A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 GLN 46 46 46 GLN GLN A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 HIS 55 55 55 HIS HIS A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 HIS 60 60 60 HIS HIS A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 TRP 64 64 64 TRP TRP A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 ASP 80 80 80 ASP ASP A . n A 1 81 ILE 81 81 81 ILE ILE A . n A 1 82 MET 82 82 82 MET MET A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 TYR 86 86 86 TYR TYR A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 PRO 88 88 88 PRO PRO A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 MET 97 97 97 MET MET A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 TYR 101 101 101 TYR TYR A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 GLN 105 105 105 GLN GLN A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 TYR 108 108 108 TYR TYR A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 PRO 114 114 114 PRO PRO A . n A 1 115 ASP 115 115 115 ASP ASP A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 ASP 117 117 117 ASP ASP A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 LYS 120 120 120 LYS LYS A . n A 1 121 PRO 121 121 121 PRO PRO A . n A 1 122 ILE 122 122 122 ILE ILE A . n A 1 123 ASN 123 123 123 ASN ASN A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 MET 125 125 125 MET MET A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 TRP 127 127 127 TRP TRP A . n A 1 128 GLY 128 128 128 GLY GLY A . n A 1 129 VAL 129 129 129 VAL VAL A . n A 1 130 SER 130 130 130 SER SER A . n A 1 131 ASP 131 131 131 ASP ASP A . n A 1 132 ASN 132 132 132 ASN ASN A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 ILE 134 134 134 ILE ILE A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 MET 136 136 136 MET MET A . n A 1 137 SER 137 137 137 SER SER A . n A 1 138 GLN 138 138 138 GLN GLN A . n A 1 139 LEU 139 139 139 LEU LEU A . n A 1 140 LYS 140 140 140 LYS LYS A . n A 1 141 ASP 141 141 141 ASP ASP A . n A 1 142 PHE 142 142 142 PHE PHE A . n A 1 143 ASN 143 143 143 ASN ASN A . n A 1 144 PHE 144 144 144 PHE PHE A . n A 1 145 ASN 145 145 145 ASN ASN A . n A 1 146 LYS 146 146 146 LYS LYS A . n A 1 147 PRO 147 147 147 PRO PRO A . n A 1 148 ARG 148 148 148 ARG ARG A . n A 1 149 PHE 149 149 149 PHE PHE A . n A 1 150 ASP 150 150 150 ASP ASP A . n A 1 151 PHE 151 151 151 PHE PHE A . n A 1 152 TYR 152 152 152 TYR TYR A . n A 1 153 GLU 153 153 153 GLU GLU A . n A 1 154 GLY 154 154 154 GLY GLY A . n A 1 155 ALA 155 155 155 ALA ALA A . n A 1 156 VAL 156 156 156 VAL VAL A . n A 1 157 TYR 157 157 157 TYR TYR A . n B 1 1 MET 1 201 ? ? ? B . n B 1 2 PRO 2 202 202 PRO PRO B . n B 1 3 LYS 3 203 203 LYS LYS B . n B 1 4 LYS 4 204 204 LYS LYS B . n B 1 5 THR 5 205 205 THR THR B . n B 1 6 ILE 6 206 206 ILE ILE B . n B 1 7 TYR 7 207 207 TYR TYR B . n B 1 8 PHE 8 208 208 PHE PHE B . n B 1 9 GLY 9 209 209 GLY GLY B . n B 1 10 ALA 10 210 210 ALA ALA B . n B 1 11 GLY 11 211 211 GLY GLY B . n B 1 12 TRP 12 212 212 TRP TRP B . n B 1 13 PHE 13 213 213 PHE PHE B . n B 1 14 THR 14 214 214 THR THR B . n B 1 15 ASP 15 215 215 ASP ASP B . n B 1 16 ARG 16 216 216 ARG ARG B . n B 1 17 GLN 17 217 217 GLN GLN B . n B 1 18 ASN 18 218 218 ASN ASN B . n B 1 19 LYS 19 219 219 LYS LYS B . n B 1 20 ALA 20 220 220 ALA ALA B . n B 1 21 TYR 21 221 221 TYR TYR B . n B 1 22 LYS 22 222 222 LYS LYS B . n B 1 23 GLU 23 223 223 GLU GLU B . n B 1 24 ALA 24 224 224 ALA ALA B . n B 1 25 MET 25 225 225 MET MET B . n B 1 26 GLU 26 226 226 GLU GLU B . n B 1 27 ALA 27 227 227 ALA ALA B . n B 1 28 LEU 28 228 228 LEU LEU B . n B 1 29 LYS 29 229 229 LYS LYS B . n B 1 30 GLU 30 230 230 GLU GLU B . n B 1 31 ASN 31 231 231 ASN ASN B . n B 1 32 PRO 32 232 232 PRO PRO B . n B 1 33 THR 33 233 233 THR THR B . n B 1 34 ILE 34 234 234 ILE ILE B . n B 1 35 ASP 35 235 235 ASP ASP B . n B 1 36 LEU 36 236 236 LEU LEU B . n B 1 37 GLU 37 237 237 GLU GLU B . n B 1 38 ASN 38 238 238 ASN ASN B . n B 1 39 SER 39 239 239 SER SER B . n B 1 40 TYR 40 240 240 TYR TYR B . n B 1 41 VAL 41 241 241 VAL VAL B . n B 1 42 PRO 42 242 242 PRO PRO B . n B 1 43 LEU 43 243 243 LEU LEU B . n B 1 44 ASP 44 244 244 ASP ASP B . n B 1 45 ASN 45 245 245 ASN ASN B . n B 1 46 GLN 46 246 246 GLN GLN B . n B 1 47 TYR 47 247 247 TYR TYR B . n B 1 48 LYS 48 248 248 LYS LYS B . n B 1 49 GLY 49 249 249 GLY GLY B . n B 1 50 ILE 50 250 250 ILE ILE B . n B 1 51 ARG 51 251 251 ARG ARG B . n B 1 52 VAL 52 252 252 VAL VAL B . n B 1 53 ASP 53 253 253 ASP ASP B . n B 1 54 GLU 54 254 254 GLU GLU B . n B 1 55 HIS 55 255 255 HIS HIS B . n B 1 56 PRO 56 256 256 PRO PRO B . n B 1 57 GLU 57 257 257 GLU GLU B . n B 1 58 TYR 58 258 258 TYR TYR B . n B 1 59 LEU 59 259 259 LEU LEU B . n B 1 60 HIS 60 260 260 HIS HIS B . n B 1 61 ASP 61 261 261 ASP ASP B . n B 1 62 LYS 62 262 262 LYS LYS B . n B 1 63 VAL 63 263 263 VAL VAL B . n B 1 64 TRP 64 264 264 TRP TRP B . n B 1 65 ALA 65 265 265 ALA ALA B . n B 1 66 THR 66 266 266 THR THR B . n B 1 67 ALA 67 267 267 ALA ALA B . n B 1 68 THR 68 268 268 THR THR B . n B 1 69 TYR 69 269 269 TYR TYR B . n B 1 70 ASN 70 270 270 ASN ASN B . n B 1 71 ASN 71 271 271 ASN ASN B . n B 1 72 ASP 72 272 272 ASP ASP B . n B 1 73 LEU 73 273 273 LEU LEU B . n B 1 74 ASN 74 274 274 ASN ASN B . n B 1 75 GLY 75 275 275 GLY GLY B . n B 1 76 ILE 76 276 276 ILE ILE B . n B 1 77 LYS 77 277 277 LYS LYS B . n B 1 78 THR 78 278 278 THR THR B . n B 1 79 ASN 79 279 279 ASN ASN B . n B 1 80 ASP 80 280 280 ASP ASP B . n B 1 81 ILE 81 281 281 ILE ILE B . n B 1 82 MET 82 282 282 MET MET B . n B 1 83 LEU 83 283 283 LEU LEU B . n B 1 84 GLY 84 284 284 GLY GLY B . n B 1 85 VAL 85 285 285 VAL VAL B . n B 1 86 TYR 86 286 286 TYR TYR B . n B 1 87 ILE 87 287 287 ILE ILE B . n B 1 88 PRO 88 288 288 PRO PRO B . n B 1 89 ASP 89 289 289 ASP ASP B . n B 1 90 GLU 90 290 290 GLU GLU B . n B 1 91 GLU 91 291 291 GLU GLU B . n B 1 92 ASP 92 292 292 ASP ASP B . n B 1 93 VAL 93 293 293 VAL VAL B . n B 1 94 GLY 94 294 294 GLY GLY B . n B 1 95 LEU 95 295 295 LEU LEU B . n B 1 96 GLY 96 296 296 GLY GLY B . n B 1 97 MET 97 297 297 MET MET B . n B 1 98 GLU 98 298 298 GLU GLU B . n B 1 99 LEU 99 299 299 LEU LEU B . n B 1 100 GLY 100 300 300 GLY GLY B . n B 1 101 TYR 101 301 301 TYR TYR B . n B 1 102 ALA 102 302 302 ALA ALA B . n B 1 103 LEU 103 303 303 LEU LEU B . n B 1 104 SER 104 304 304 SER SER B . n B 1 105 GLN 105 305 305 GLN GLN B . n B 1 106 GLY 106 306 306 GLY GLY B . n B 1 107 LYS 107 307 307 LYS LYS B . n B 1 108 TYR 108 308 308 TYR TYR B . n B 1 109 VAL 109 309 309 VAL VAL B . n B 1 110 LEU 110 310 310 LEU LEU B . n B 1 111 LEU 111 311 311 LEU LEU B . n B 1 112 VAL 112 312 312 VAL VAL B . n B 1 113 ILE 113 313 313 ILE ILE B . n B 1 114 PRO 114 314 314 PRO PRO B . n B 1 115 ASP 115 315 315 ASP ASP B . n B 1 116 GLU 116 316 316 GLU GLU B . n B 1 117 ASP 117 317 317 ASP ASP B . n B 1 118 TYR 118 318 318 TYR TYR B . n B 1 119 GLY 119 319 319 GLY GLY B . n B 1 120 LYS 120 320 320 LYS LYS B . n B 1 121 PRO 121 321 321 PRO PRO B . n B 1 122 ILE 122 322 322 ILE ILE B . n B 1 123 ASN 123 323 323 ASN ASN B . n B 1 124 LEU 124 324 324 LEU LEU B . n B 1 125 MET 125 325 325 MET MET B . n B 1 126 SER 126 326 326 SER SER B . n B 1 127 TRP 127 327 327 TRP TRP B . n B 1 128 GLY 128 328 328 GLY GLY B . n B 1 129 VAL 129 329 329 VAL VAL B . n B 1 130 SER 130 330 330 SER SER B . n B 1 131 ASP 131 331 331 ASP ASP B . n B 1 132 ASN 132 332 332 ASN ASN B . n B 1 133 VAL 133 333 333 VAL VAL B . n B 1 134 ILE 134 334 334 ILE ILE B . n B 1 135 LYS 135 335 335 LYS LYS B . n B 1 136 MET 136 336 336 MET MET B . n B 1 137 SER 137 337 337 SER SER B . n B 1 138 GLN 138 338 338 GLN GLN B . n B 1 139 LEU 139 339 339 LEU LEU B . n B 1 140 LYS 140 340 340 LYS LYS B . n B 1 141 ASP 141 341 341 ASP ASP B . n B 1 142 PHE 142 342 342 PHE PHE B . n B 1 143 ASN 143 343 343 ASN ASN B . n B 1 144 PHE 144 344 344 PHE PHE B . n B 1 145 ASN 145 345 345 ASN ASN B . n B 1 146 LYS 146 346 346 LYS LYS B . n B 1 147 PRO 147 347 347 PRO PRO B . n B 1 148 ARG 148 348 348 ARG ARG B . n B 1 149 PHE 149 349 349 PHE PHE B . n B 1 150 ASP 150 350 350 ASP ASP B . n B 1 151 PHE 151 351 351 PHE PHE B . n B 1 152 TYR 152 352 352 TYR TYR B . n B 1 153 GLU 153 353 353 GLU GLU B . n B 1 154 GLY 154 354 354 GLY GLY B . n B 1 155 ALA 155 355 355 ALA ALA B . n B 1 156 VAL 156 356 356 VAL VAL B . n B 1 157 TYR 157 357 357 TYR TYR B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5MD 1 158 1 5MD 5MD A . D 2 5MD 1 2 2 5MD 5MD B . E 3 HOH 1 801 801 HOH HOH A . E 3 HOH 2 803 803 HOH HOH A . E 3 HOH 3 804 804 HOH HOH A . E 3 HOH 4 806 806 HOH HOH A . E 3 HOH 5 807 807 HOH HOH A . E 3 HOH 6 808 808 HOH HOH A . E 3 HOH 7 809 809 HOH HOH A . E 3 HOH 8 810 810 HOH HOH A . E 3 HOH 9 811 811 HOH HOH A . E 3 HOH 10 812 812 HOH HOH A . E 3 HOH 11 813 813 HOH HOH A . E 3 HOH 12 814 814 HOH HOH A . E 3 HOH 13 816 816 HOH HOH A . E 3 HOH 14 817 817 HOH HOH A . E 3 HOH 15 818 818 HOH HOH A . E 3 HOH 16 819 819 HOH HOH A . E 3 HOH 17 820 820 HOH HOH A . E 3 HOH 18 821 821 HOH HOH A . E 3 HOH 19 822 822 HOH HOH A . E 3 HOH 20 823 823 HOH HOH A . E 3 HOH 21 824 824 HOH HOH A . E 3 HOH 22 825 825 HOH HOH A . E 3 HOH 23 827 827 HOH HOH A . E 3 HOH 24 836 836 HOH HOH A . E 3 HOH 25 839 839 HOH HOH A . E 3 HOH 26 841 841 HOH HOH A . E 3 HOH 27 842 842 HOH HOH A . E 3 HOH 28 843 843 HOH HOH A . E 3 HOH 29 844 844 HOH HOH A . E 3 HOH 30 848 848 HOH HOH A . E 3 HOH 31 849 849 HOH HOH A . E 3 HOH 32 850 850 HOH HOH A . E 3 HOH 33 852 852 HOH HOH A . E 3 HOH 34 853 853 HOH HOH A . E 3 HOH 35 855 855 HOH HOH A . E 3 HOH 36 856 856 HOH HOH A . E 3 HOH 37 857 857 HOH HOH A . E 3 HOH 38 858 858 HOH HOH A . E 3 HOH 39 859 859 HOH HOH A . E 3 HOH 40 860 860 HOH HOH A . E 3 HOH 41 867 867 HOH HOH A . E 3 HOH 42 868 868 HOH HOH A . E 3 HOH 43 869 869 HOH HOH A . E 3 HOH 44 870 870 HOH HOH A . E 3 HOH 45 874 874 HOH HOH A . E 3 HOH 46 875 875 HOH HOH A . E 3 HOH 47 876 876 HOH HOH A . F 3 HOH 1 802 802 HOH HOH B . F 3 HOH 2 805 805 HOH HOH B . F 3 HOH 3 815 815 HOH HOH B . F 3 HOH 4 826 826 HOH HOH B . F 3 HOH 5 828 828 HOH HOH B . F 3 HOH 6 829 829 HOH HOH B . F 3 HOH 7 830 830 HOH HOH B . F 3 HOH 8 831 831 HOH HOH B . F 3 HOH 9 832 832 HOH HOH B . F 3 HOH 10 833 833 HOH HOH B . F 3 HOH 11 834 834 HOH HOH B . F 3 HOH 12 835 835 HOH HOH B . F 3 HOH 13 837 837 HOH HOH B . F 3 HOH 14 838 838 HOH HOH B . F 3 HOH 15 840 840 HOH HOH B . F 3 HOH 16 845 845 HOH HOH B . F 3 HOH 17 846 846 HOH HOH B . F 3 HOH 18 847 847 HOH HOH B . F 3 HOH 19 851 851 HOH HOH B . F 3 HOH 20 854 854 HOH HOH B . F 3 HOH 21 861 861 HOH HOH B . F 3 HOH 22 862 862 HOH HOH B . F 3 HOH 23 863 863 HOH HOH B . F 3 HOH 24 864 864 HOH HOH B . F 3 HOH 25 865 865 HOH HOH B . F 3 HOH 26 866 866 HOH HOH B . F 3 HOH 27 871 871 HOH HOH B . F 3 HOH 28 872 872 HOH HOH B . F 3 HOH 29 873 873 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement . ? 2 SDMS 'data reduction' . ? 3 SDMS 'data scaling' . ? 4 X-PLOR phasing . ? 5 # _cell.entry_id 1F8Y _cell.length_a 149.600 _cell.length_b 149.600 _cell.length_c 149.600 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F8Y _symmetry.space_group_name_H-M 'I 21 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 # _exptl.entry_id 1F8Y _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 68.07 _exptl_crystal.density_Matthews 3.85 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.4 _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'Ammonium Sulfate, Citrate Buffer, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 296K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 296 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SDMS _diffrn_detector.pdbx_collection_date 1992-01-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1F8Y _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 100 _reflns.d_resolution_high 2.4 _reflns.number_obs 21897 _reflns.number_all 21897 _reflns.percent_possible_obs 93 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1F8Y _refine.ls_number_reflns_obs 17921 _refine.ls_number_reflns_all 17921 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 5.00 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.16 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.16 _refine.ls_R_factor_R_free 0.218 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 1792 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2536 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 76 _refine_hist.number_atoms_total 2646 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 5.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d .008 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.56 ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1F8Y _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1F8Y _struct.title ;CRYSTAL STRUCTURE ANALYSIS OF NUCLEOSIDE 2-DEOXYRIBOSYLTRANSFERASE COMPLEXED WITH 5-METHYL-2'-DEOXYPSEUDOURIDINE ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1F8Y _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'active site, alpha/beta protein, biocatalyst, nucleoside, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.db_code NTD_LACLE _struct_ref.db_name UNP _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession Q9R5V5 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MPKKTIYFGAGWFTDRQNKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTND IMLGVYIPDEEDVGLGMELGYALSQGKYVLLVIPDEDYGKPINLMSWGVSDNVIKMSQLKDFNFNKPRFDFYEGAVY ; _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1F8Y A 1 ? 157 ? Q9R5V5 1 ? 157 ? 1 157 2 1 1F8Y B 1 ? 157 ? Q9R5V5 1 ? 157 ? 201 357 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 z+1/2,-x+1/2,-y 0.0000000000 0.0000000000 1.0000000000 74.8000000000 -1.0000000000 0.0000000000 0.0000000000 74.8000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 3 'crystal symmetry operation' 12_554 -y+1/2,-z,x-1/2 0.0000000000 -1.0000000000 0.0000000000 74.8000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -74.8000000000 # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a hexamer. Each pair of monomers is related by a noncrystallographic twofold symmetry axis.' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 14 ? ASN A 31 ? THR A 14 ASN A 31 1 ? 18 HELX_P HELX_P2 2 VAL A 41 ? ASN A 45 ? VAL A 41 ASN A 45 5 ? 5 HELX_P HELX_P3 3 GLN A 46 ? ILE A 50 ? GLN A 46 ILE A 50 5 ? 5 HELX_P HELX_P4 4 HIS A 55 ? HIS A 60 ? HIS A 55 HIS A 60 5 ? 6 HELX_P HELX_P5 5 ASP A 61 ? THR A 78 ? ASP A 61 THR A 78 1 ? 18 HELX_P HELX_P6 6 ILE A 87 ? GLU A 91 ? ILE A 87 GLU A 91 5 ? 5 HELX_P HELX_P7 7 ASP A 92 ? GLN A 105 ? ASP A 92 GLN A 105 1 ? 14 HELX_P HELX_P8 8 PRO A 114 ? TYR A 118 ? PRO A 114 TYR A 118 5 ? 5 HELX_P HELX_P9 9 ASN A 123 ? SER A 130 ? ASN A 123 SER A 130 1 ? 8 HELX_P HELX_P10 10 SER A 137 ? LEU A 139 ? SER A 137 LEU A 139 5 ? 3 HELX_P HELX_P11 11 THR B 14 ? ASN B 31 ? THR B 214 ASN B 231 1 ? 18 HELX_P HELX_P12 12 VAL B 41 ? ASN B 45 ? VAL B 241 ASN B 245 5 ? 5 HELX_P HELX_P13 13 GLN B 46 ? ILE B 50 ? GLN B 246 ILE B 250 5 ? 5 HELX_P HELX_P14 14 ARG B 51 ? HIS B 55 ? ARG B 251 HIS B 255 5 ? 5 HELX_P HELX_P15 15 HIS B 55 ? HIS B 60 ? HIS B 255 HIS B 260 5 ? 6 HELX_P HELX_P16 16 ASP B 61 ? THR B 78 ? ASP B 261 THR B 278 1 ? 18 HELX_P HELX_P17 17 ASP B 92 ? GLN B 105 ? ASP B 292 GLN B 305 1 ? 14 HELX_P HELX_P18 18 ASN B 123 ? SER B 130 ? ASN B 323 SER B 330 1 ? 8 HELX_P HELX_P19 19 SER B 137 ? LEU B 139 ? SER B 337 LEU B 339 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 6 ? GLY A 9 ? ILE A 6 GLY A 9 A 2 ILE A 81 ? VAL A 85 ? ILE A 81 VAL A 85 A 3 TYR A 108 ? ILE A 113 ? TYR A 108 ILE A 113 A 4 ASN A 132 ? LYS A 135 ? ASN A 132 LYS A 135 B 1 ILE B 6 ? GLY B 9 ? ILE B 206 GLY B 209 B 2 ILE B 81 ? VAL B 85 ? ILE B 281 VAL B 285 B 3 TYR B 108 ? ILE B 113 ? TYR B 308 ILE B 313 B 4 ASN B 132 ? LYS B 135 ? ASN B 332 LYS B 335 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 7 ? N TYR A 7 O ILE A 81 ? O ILE A 81 A 2 3 N MET A 82 ? N MET A 82 O TYR A 108 ? O TYR A 108 A 3 4 N LEU A 111 ? N LEU A 111 O ASN A 132 ? O ASN A 132 B 1 2 N TYR B 7 ? N TYR B 207 O ILE B 81 ? O ILE B 281 B 2 3 N MET B 82 ? N MET B 282 O TYR B 108 ? O TYR B 308 B 3 4 N LEU B 111 ? N LEU B 311 O ASN B 132 ? O ASN B 332 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 5MD 158 ? 12 'BINDING SITE FOR RESIDUE 5MD A 158' AC2 Software B 5MD 2 ? 11 'BINDING SITE FOR RESIDUE 5MD B 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 TYR A 7 ? TYR A 7 . ? 1_555 ? 2 AC1 12 GLY A 9 ? GLY A 9 . ? 1_555 ? 3 AC1 12 ALA A 10 ? ALA A 10 . ? 1_555 ? 4 AC1 12 TRP A 12 ? TRP A 12 . ? 1_555 ? 5 AC1 12 PHE A 13 ? PHE A 13 . ? 1_555 ? 6 AC1 12 GLN A 46 ? GLN A 46 . ? 1_555 ? 7 AC1 12 ASP A 72 ? ASP A 72 . ? 1_555 ? 8 AC1 12 ASP A 92 ? ASP A 92 . ? 1_555 ? 9 AC1 12 GLY A 94 ? GLY A 94 . ? 1_555 ? 10 AC1 12 GLU A 98 ? GLU A 98 . ? 1_555 ? 11 AC1 12 ASN B 123 ? ASN B 323 . ? 1_555 ? 12 AC1 12 TYR B 157 ? TYR B 357 . ? 1_555 ? 13 AC2 11 ASN A 123 ? ASN A 123 . ? 1_555 ? 14 AC2 11 MET A 125 ? MET A 125 . ? 1_555 ? 15 AC2 11 TYR A 157 ? TYR A 157 . ? 1_555 ? 16 AC2 11 TYR B 7 ? TYR B 207 . ? 1_555 ? 17 AC2 11 GLY B 9 ? GLY B 209 . ? 1_555 ? 18 AC2 11 TRP B 12 ? TRP B 212 . ? 1_555 ? 19 AC2 11 PRO B 42 ? PRO B 242 . ? 1_555 ? 20 AC2 11 GLN B 46 ? GLN B 246 . ? 1_555 ? 21 AC2 11 ASP B 72 ? ASP B 272 . ? 1_555 ? 22 AC2 11 ASP B 92 ? ASP B 292 . ? 1_555 ? 23 AC2 11 GLU B 98 ? GLU B 298 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 12 ? ? -146.41 40.46 2 1 TRP B 212 ? ? -152.05 33.87 3 1 HIS B 255 ? ? -155.65 72.19 4 1 PRO B 256 ? ? -52.98 -7.26 5 1 ASN B 332 ? ? -173.70 147.27 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 B MET 201 ? B MET 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5MD "O5'" O N N 1 5MD "C5'" C N N 2 5MD "C4'" C N R 3 5MD "O4'" O N N 4 5MD "C1'" C N R 5 5MD C1 C N N 6 5MD C6 C N N 7 5MD C2 C N N 8 5MD O2 O N N 9 5MD N3 N N N 10 5MD C4 C N N 11 5MD O4 O N N 12 5MD N5 N N N 13 5MD C5 C N N 14 5MD "C3'" C N S 15 5MD "O3'" O N N 16 5MD "C2'" C N N 17 5MD "H5'" H N N 18 5MD "H5'1" H N N 19 5MD "H5'2" H N N 20 5MD "H4'" H N N 21 5MD "H1'" H N N 22 5MD H6 H N N 23 5MD HN3 H N N 24 5MD H51 H N N 25 5MD H52 H N N 26 5MD H53 H N N 27 5MD "H3'" H N N 28 5MD "H3'A" H N N 29 5MD "H2'1" H N N 30 5MD "H2'2" H N N 31 ALA N N N N 32 ALA CA C N S 33 ALA C C N N 34 ALA O O N N 35 ALA CB C N N 36 ALA OXT O N N 37 ALA H H N N 38 ALA H2 H N N 39 ALA HA H N N 40 ALA HB1 H N N 41 ALA HB2 H N N 42 ALA HB3 H N N 43 ALA HXT H N N 44 ARG N N N N 45 ARG CA C N S 46 ARG C C N N 47 ARG O O N N 48 ARG CB C N N 49 ARG CG C N N 50 ARG CD C N N 51 ARG NE N N N 52 ARG CZ C N N 53 ARG NH1 N N N 54 ARG NH2 N N N 55 ARG OXT O N N 56 ARG H H N N 57 ARG H2 H N N 58 ARG HA H N N 59 ARG HB2 H N N 60 ARG HB3 H N N 61 ARG HG2 H N N 62 ARG HG3 H N N 63 ARG HD2 H N N 64 ARG HD3 H N N 65 ARG HE H N N 66 ARG HH11 H N N 67 ARG HH12 H N N 68 ARG HH21 H N N 69 ARG HH22 H N N 70 ARG HXT H N N 71 ASN N N N N 72 ASN CA C N S 73 ASN C C N N 74 ASN O O N N 75 ASN CB C N N 76 ASN CG C N N 77 ASN OD1 O N N 78 ASN ND2 N N N 79 ASN OXT O N N 80 ASN H H N N 81 ASN H2 H N N 82 ASN HA H N N 83 ASN HB2 H N N 84 ASN HB3 H N N 85 ASN HD21 H N N 86 ASN HD22 H N N 87 ASN HXT H N N 88 ASP N N N N 89 ASP CA C N S 90 ASP C C N N 91 ASP O O N N 92 ASP CB C N N 93 ASP CG C N N 94 ASP OD1 O N N 95 ASP OD2 O N N 96 ASP OXT O N N 97 ASP H H N N 98 ASP H2 H N N 99 ASP HA H N N 100 ASP HB2 H N N 101 ASP HB3 H N N 102 ASP HD2 H N N 103 ASP HXT H N N 104 GLN N N N N 105 GLN CA C N S 106 GLN C C N N 107 GLN O O N N 108 GLN CB C N N 109 GLN CG C N N 110 GLN CD C N N 111 GLN OE1 O N N 112 GLN NE2 N N N 113 GLN OXT O N N 114 GLN H H N N 115 GLN H2 H N N 116 GLN HA H N N 117 GLN HB2 H N N 118 GLN HB3 H N N 119 GLN HG2 H N N 120 GLN HG3 H N N 121 GLN HE21 H N N 122 GLN HE22 H N N 123 GLN HXT H N N 124 GLU N N N N 125 GLU CA C N S 126 GLU C C N N 127 GLU O O N N 128 GLU CB C N N 129 GLU CG C N N 130 GLU CD C N N 131 GLU OE1 O N N 132 GLU OE2 O N N 133 GLU OXT O N N 134 GLU H H N N 135 GLU H2 H N N 136 GLU HA H N N 137 GLU HB2 H N N 138 GLU HB3 H N N 139 GLU HG2 H N N 140 GLU HG3 H N N 141 GLU HE2 H N N 142 GLU HXT H N N 143 GLY N N N N 144 GLY CA C N N 145 GLY C C N N 146 GLY O O N N 147 GLY OXT O N N 148 GLY H H N N 149 GLY H2 H N N 150 GLY HA2 H N N 151 GLY HA3 H N N 152 GLY HXT H N N 153 HIS N N N N 154 HIS CA C N S 155 HIS C C N N 156 HIS O O N N 157 HIS CB C N N 158 HIS CG C Y N 159 HIS ND1 N Y N 160 HIS CD2 C Y N 161 HIS CE1 C Y N 162 HIS NE2 N Y N 163 HIS OXT O N N 164 HIS H H N N 165 HIS H2 H N N 166 HIS HA H N N 167 HIS HB2 H N N 168 HIS HB3 H N N 169 HIS HD1 H N N 170 HIS HD2 H N N 171 HIS HE1 H N N 172 HIS HE2 H N N 173 HIS HXT H N N 174 HOH O O N N 175 HOH H1 H N N 176 HOH H2 H N N 177 ILE N N N N 178 ILE CA C N S 179 ILE C C N N 180 ILE O O N N 181 ILE CB C N S 182 ILE CG1 C N N 183 ILE CG2 C N N 184 ILE CD1 C N N 185 ILE OXT O N N 186 ILE H H N N 187 ILE H2 H N N 188 ILE HA H N N 189 ILE HB H N N 190 ILE HG12 H N N 191 ILE HG13 H N N 192 ILE HG21 H N N 193 ILE HG22 H N N 194 ILE HG23 H N N 195 ILE HD11 H N N 196 ILE HD12 H N N 197 ILE HD13 H N N 198 ILE HXT H N N 199 LEU N N N N 200 LEU CA C N S 201 LEU C C N N 202 LEU O O N N 203 LEU CB C N N 204 LEU CG C N N 205 LEU CD1 C N N 206 LEU CD2 C N N 207 LEU OXT O N N 208 LEU H H N N 209 LEU H2 H N N 210 LEU HA H N N 211 LEU HB2 H N N 212 LEU HB3 H N N 213 LEU HG H N N 214 LEU HD11 H N N 215 LEU HD12 H N N 216 LEU HD13 H N N 217 LEU HD21 H N N 218 LEU HD22 H N N 219 LEU HD23 H N N 220 LEU HXT H N N 221 LYS N N N N 222 LYS CA C N S 223 LYS C C N N 224 LYS O O N N 225 LYS CB C N N 226 LYS CG C N N 227 LYS CD C N N 228 LYS CE C N N 229 LYS NZ N N N 230 LYS OXT O N N 231 LYS H H N N 232 LYS H2 H N N 233 LYS HA H N N 234 LYS HB2 H N N 235 LYS HB3 H N N 236 LYS HG2 H N N 237 LYS HG3 H N N 238 LYS HD2 H N N 239 LYS HD3 H N N 240 LYS HE2 H N N 241 LYS HE3 H N N 242 LYS HZ1 H N N 243 LYS HZ2 H N N 244 LYS HZ3 H N N 245 LYS HXT H N N 246 MET N N N N 247 MET CA C N S 248 MET C C N N 249 MET O O N N 250 MET CB C N N 251 MET CG C N N 252 MET SD S N N 253 MET CE C N N 254 MET OXT O N N 255 MET H H N N 256 MET H2 H N N 257 MET HA H N N 258 MET HB2 H N N 259 MET HB3 H N N 260 MET HG2 H N N 261 MET HG3 H N N 262 MET HE1 H N N 263 MET HE2 H N N 264 MET HE3 H N N 265 MET HXT H N N 266 PHE N N N N 267 PHE CA C N S 268 PHE C C N N 269 PHE O O N N 270 PHE CB C N N 271 PHE CG C Y N 272 PHE CD1 C Y N 273 PHE CD2 C Y N 274 PHE CE1 C Y N 275 PHE CE2 C Y N 276 PHE CZ C Y N 277 PHE OXT O N N 278 PHE H H N N 279 PHE H2 H N N 280 PHE HA H N N 281 PHE HB2 H N N 282 PHE HB3 H N N 283 PHE HD1 H N N 284 PHE HD2 H N N 285 PHE HE1 H N N 286 PHE HE2 H N N 287 PHE HZ H N N 288 PHE HXT H N N 289 PRO N N N N 290 PRO CA C N S 291 PRO C C N N 292 PRO O O N N 293 PRO CB C N N 294 PRO CG C N N 295 PRO CD C N N 296 PRO OXT O N N 297 PRO H H N N 298 PRO HA H N N 299 PRO HB2 H N N 300 PRO HB3 H N N 301 PRO HG2 H N N 302 PRO HG3 H N N 303 PRO HD2 H N N 304 PRO HD3 H N N 305 PRO HXT H N N 306 SER N N N N 307 SER CA C N S 308 SER C C N N 309 SER O O N N 310 SER CB C N N 311 SER OG O N N 312 SER OXT O N N 313 SER H H N N 314 SER H2 H N N 315 SER HA H N N 316 SER HB2 H N N 317 SER HB3 H N N 318 SER HG H N N 319 SER HXT H N N 320 THR N N N N 321 THR CA C N S 322 THR C C N N 323 THR O O N N 324 THR CB C N R 325 THR OG1 O N N 326 THR CG2 C N N 327 THR OXT O N N 328 THR H H N N 329 THR H2 H N N 330 THR HA H N N 331 THR HB H N N 332 THR HG1 H N N 333 THR HG21 H N N 334 THR HG22 H N N 335 THR HG23 H N N 336 THR HXT H N N 337 TRP N N N N 338 TRP CA C N S 339 TRP C C N N 340 TRP O O N N 341 TRP CB C N N 342 TRP CG C Y N 343 TRP CD1 C Y N 344 TRP CD2 C Y N 345 TRP NE1 N Y N 346 TRP CE2 C Y N 347 TRP CE3 C Y N 348 TRP CZ2 C Y N 349 TRP CZ3 C Y N 350 TRP CH2 C Y N 351 TRP OXT O N N 352 TRP H H N N 353 TRP H2 H N N 354 TRP HA H N N 355 TRP HB2 H N N 356 TRP HB3 H N N 357 TRP HD1 H N N 358 TRP HE1 H N N 359 TRP HE3 H N N 360 TRP HZ2 H N N 361 TRP HZ3 H N N 362 TRP HH2 H N N 363 TRP HXT H N N 364 TYR N N N N 365 TYR CA C N S 366 TYR C C N N 367 TYR O O N N 368 TYR CB C N N 369 TYR CG C Y N 370 TYR CD1 C Y N 371 TYR CD2 C Y N 372 TYR CE1 C Y N 373 TYR CE2 C Y N 374 TYR CZ C Y N 375 TYR OH O N N 376 TYR OXT O N N 377 TYR H H N N 378 TYR H2 H N N 379 TYR HA H N N 380 TYR HB2 H N N 381 TYR HB3 H N N 382 TYR HD1 H N N 383 TYR HD2 H N N 384 TYR HE1 H N N 385 TYR HE2 H N N 386 TYR HH H N N 387 TYR HXT H N N 388 VAL N N N N 389 VAL CA C N S 390 VAL C C N N 391 VAL O O N N 392 VAL CB C N N 393 VAL CG1 C N N 394 VAL CG2 C N N 395 VAL OXT O N N 396 VAL H H N N 397 VAL H2 H N N 398 VAL HA H N N 399 VAL HB H N N 400 VAL HG11 H N N 401 VAL HG12 H N N 402 VAL HG13 H N N 403 VAL HG21 H N N 404 VAL HG22 H N N 405 VAL HG23 H N N 406 VAL HXT H N N 407 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5MD "O5'" "C5'" sing N N 1 5MD "O5'" "H5'" sing N N 2 5MD "C5'" "C4'" sing N N 3 5MD "C5'" "H5'1" sing N N 4 5MD "C5'" "H5'2" sing N N 5 5MD "C4'" "O4'" sing N N 6 5MD "C4'" "C3'" sing N N 7 5MD "C4'" "H4'" sing N N 8 5MD "O4'" "C1'" sing N N 9 5MD "C1'" C1 sing N N 10 5MD "C1'" "C2'" sing N N 11 5MD "C1'" "H1'" sing N N 12 5MD C1 C6 doub N N 13 5MD C1 C2 sing N N 14 5MD C6 N5 sing N N 15 5MD C6 H6 sing N N 16 5MD C2 O2 doub N N 17 5MD C2 N3 sing N N 18 5MD N3 C4 sing N N 19 5MD N3 HN3 sing N N 20 5MD C4 O4 doub N N 21 5MD C4 N5 sing N N 22 5MD N5 C5 sing N N 23 5MD C5 H51 sing N N 24 5MD C5 H52 sing N N 25 5MD C5 H53 sing N N 26 5MD "C3'" "O3'" sing N N 27 5MD "C3'" "C2'" sing N N 28 5MD "C3'" "H3'" sing N N 29 5MD "O3'" "H3'A" sing N N 30 5MD "C2'" "H2'1" sing N N 31 5MD "C2'" "H2'2" sing N N 32 ALA N CA sing N N 33 ALA N H sing N N 34 ALA N H2 sing N N 35 ALA CA C sing N N 36 ALA CA CB sing N N 37 ALA CA HA sing N N 38 ALA C O doub N N 39 ALA C OXT sing N N 40 ALA CB HB1 sing N N 41 ALA CB HB2 sing N N 42 ALA CB HB3 sing N N 43 ALA OXT HXT sing N N 44 ARG N CA sing N N 45 ARG N H sing N N 46 ARG N H2 sing N N 47 ARG CA C sing N N 48 ARG CA CB sing N N 49 ARG CA HA sing N N 50 ARG C O doub N N 51 ARG C OXT sing N N 52 ARG CB CG sing N N 53 ARG CB HB2 sing N N 54 ARG CB HB3 sing N N 55 ARG CG CD sing N N 56 ARG CG HG2 sing N N 57 ARG CG HG3 sing N N 58 ARG CD NE sing N N 59 ARG CD HD2 sing N N 60 ARG CD HD3 sing N N 61 ARG NE CZ sing N N 62 ARG NE HE sing N N 63 ARG CZ NH1 sing N N 64 ARG CZ NH2 doub N N 65 ARG NH1 HH11 sing N N 66 ARG NH1 HH12 sing N N 67 ARG NH2 HH21 sing N N 68 ARG NH2 HH22 sing N N 69 ARG OXT HXT sing N N 70 ASN N CA sing N N 71 ASN N H sing N N 72 ASN N H2 sing N N 73 ASN CA C sing N N 74 ASN CA CB sing N N 75 ASN CA HA sing N N 76 ASN C O doub N N 77 ASN C OXT sing N N 78 ASN CB CG sing N N 79 ASN CB HB2 sing N N 80 ASN CB HB3 sing N N 81 ASN CG OD1 doub N N 82 ASN CG ND2 sing N N 83 ASN ND2 HD21 sing N N 84 ASN ND2 HD22 sing N N 85 ASN OXT HXT sing N N 86 ASP N CA sing N N 87 ASP N H sing N N 88 ASP N H2 sing N N 89 ASP CA C sing N N 90 ASP CA CB sing N N 91 ASP CA HA sing N N 92 ASP C O doub N N 93 ASP C OXT sing N N 94 ASP CB CG sing N N 95 ASP CB HB2 sing N N 96 ASP CB HB3 sing N N 97 ASP CG OD1 doub N N 98 ASP CG OD2 sing N N 99 ASP OD2 HD2 sing N N 100 ASP OXT HXT sing N N 101 GLN N CA sing N N 102 GLN N H sing N N 103 GLN N H2 sing N N 104 GLN CA C sing N N 105 GLN CA CB sing N N 106 GLN CA HA sing N N 107 GLN C O doub N N 108 GLN C OXT sing N N 109 GLN CB CG sing N N 110 GLN CB HB2 sing N N 111 GLN CB HB3 sing N N 112 GLN CG CD sing N N 113 GLN CG HG2 sing N N 114 GLN CG HG3 sing N N 115 GLN CD OE1 doub N N 116 GLN CD NE2 sing N N 117 GLN NE2 HE21 sing N N 118 GLN NE2 HE22 sing N N 119 GLN OXT HXT sing N N 120 GLU N CA sing N N 121 GLU N H sing N N 122 GLU N H2 sing N N 123 GLU CA C sing N N 124 GLU CA CB sing N N 125 GLU CA HA sing N N 126 GLU C O doub N N 127 GLU C OXT sing N N 128 GLU CB CG sing N N 129 GLU CB HB2 sing N N 130 GLU CB HB3 sing N N 131 GLU CG CD sing N N 132 GLU CG HG2 sing N N 133 GLU CG HG3 sing N N 134 GLU CD OE1 doub N N 135 GLU CD OE2 sing N N 136 GLU OE2 HE2 sing N N 137 GLU OXT HXT sing N N 138 GLY N CA sing N N 139 GLY N H sing N N 140 GLY N H2 sing N N 141 GLY CA C sing N N 142 GLY CA HA2 sing N N 143 GLY CA HA3 sing N N 144 GLY C O doub N N 145 GLY C OXT sing N N 146 GLY OXT HXT sing N N 147 HIS N CA sing N N 148 HIS N H sing N N 149 HIS N H2 sing N N 150 HIS CA C sing N N 151 HIS CA CB sing N N 152 HIS CA HA sing N N 153 HIS C O doub N N 154 HIS C OXT sing N N 155 HIS CB CG sing N N 156 HIS CB HB2 sing N N 157 HIS CB HB3 sing N N 158 HIS CG ND1 sing Y N 159 HIS CG CD2 doub Y N 160 HIS ND1 CE1 doub Y N 161 HIS ND1 HD1 sing N N 162 HIS CD2 NE2 sing Y N 163 HIS CD2 HD2 sing N N 164 HIS CE1 NE2 sing Y N 165 HIS CE1 HE1 sing N N 166 HIS NE2 HE2 sing N N 167 HIS OXT HXT sing N N 168 HOH O H1 sing N N 169 HOH O H2 sing N N 170 ILE N CA sing N N 171 ILE N H sing N N 172 ILE N H2 sing N N 173 ILE CA C sing N N 174 ILE CA CB sing N N 175 ILE CA HA sing N N 176 ILE C O doub N N 177 ILE C OXT sing N N 178 ILE CB CG1 sing N N 179 ILE CB CG2 sing N N 180 ILE CB HB sing N N 181 ILE CG1 CD1 sing N N 182 ILE CG1 HG12 sing N N 183 ILE CG1 HG13 sing N N 184 ILE CG2 HG21 sing N N 185 ILE CG2 HG22 sing N N 186 ILE CG2 HG23 sing N N 187 ILE CD1 HD11 sing N N 188 ILE CD1 HD12 sing N N 189 ILE CD1 HD13 sing N N 190 ILE OXT HXT sing N N 191 LEU N CA sing N N 192 LEU N H sing N N 193 LEU N H2 sing N N 194 LEU CA C sing N N 195 LEU CA CB sing N N 196 LEU CA HA sing N N 197 LEU C O doub N N 198 LEU C OXT sing N N 199 LEU CB CG sing N N 200 LEU CB HB2 sing N N 201 LEU CB HB3 sing N N 202 LEU CG CD1 sing N N 203 LEU CG CD2 sing N N 204 LEU CG HG sing N N 205 LEU CD1 HD11 sing N N 206 LEU CD1 HD12 sing N N 207 LEU CD1 HD13 sing N N 208 LEU CD2 HD21 sing N N 209 LEU CD2 HD22 sing N N 210 LEU CD2 HD23 sing N N 211 LEU OXT HXT sing N N 212 LYS N CA sing N N 213 LYS N H sing N N 214 LYS N H2 sing N N 215 LYS CA C sing N N 216 LYS CA CB sing N N 217 LYS CA HA sing N N 218 LYS C O doub N N 219 LYS C OXT sing N N 220 LYS CB CG sing N N 221 LYS CB HB2 sing N N 222 LYS CB HB3 sing N N 223 LYS CG CD sing N N 224 LYS CG HG2 sing N N 225 LYS CG HG3 sing N N 226 LYS CD CE sing N N 227 LYS CD HD2 sing N N 228 LYS CD HD3 sing N N 229 LYS CE NZ sing N N 230 LYS CE HE2 sing N N 231 LYS CE HE3 sing N N 232 LYS NZ HZ1 sing N N 233 LYS NZ HZ2 sing N N 234 LYS NZ HZ3 sing N N 235 LYS OXT HXT sing N N 236 MET N CA sing N N 237 MET N H sing N N 238 MET N H2 sing N N 239 MET CA C sing N N 240 MET CA CB sing N N 241 MET CA HA sing N N 242 MET C O doub N N 243 MET C OXT sing N N 244 MET CB CG sing N N 245 MET CB HB2 sing N N 246 MET CB HB3 sing N N 247 MET CG SD sing N N 248 MET CG HG2 sing N N 249 MET CG HG3 sing N N 250 MET SD CE sing N N 251 MET CE HE1 sing N N 252 MET CE HE2 sing N N 253 MET CE HE3 sing N N 254 MET OXT HXT sing N N 255 PHE N CA sing N N 256 PHE N H sing N N 257 PHE N H2 sing N N 258 PHE CA C sing N N 259 PHE CA CB sing N N 260 PHE CA HA sing N N 261 PHE C O doub N N 262 PHE C OXT sing N N 263 PHE CB CG sing N N 264 PHE CB HB2 sing N N 265 PHE CB HB3 sing N N 266 PHE CG CD1 doub Y N 267 PHE CG CD2 sing Y N 268 PHE CD1 CE1 sing Y N 269 PHE CD1 HD1 sing N N 270 PHE CD2 CE2 doub Y N 271 PHE CD2 HD2 sing N N 272 PHE CE1 CZ doub Y N 273 PHE CE1 HE1 sing N N 274 PHE CE2 CZ sing Y N 275 PHE CE2 HE2 sing N N 276 PHE CZ HZ sing N N 277 PHE OXT HXT sing N N 278 PRO N CA sing N N 279 PRO N CD sing N N 280 PRO N H sing N N 281 PRO CA C sing N N 282 PRO CA CB sing N N 283 PRO CA HA sing N N 284 PRO C O doub N N 285 PRO C OXT sing N N 286 PRO CB CG sing N N 287 PRO CB HB2 sing N N 288 PRO CB HB3 sing N N 289 PRO CG CD sing N N 290 PRO CG HG2 sing N N 291 PRO CG HG3 sing N N 292 PRO CD HD2 sing N N 293 PRO CD HD3 sing N N 294 PRO OXT HXT sing N N 295 SER N CA sing N N 296 SER N H sing N N 297 SER N H2 sing N N 298 SER CA C sing N N 299 SER CA CB sing N N 300 SER CA HA sing N N 301 SER C O doub N N 302 SER C OXT sing N N 303 SER CB OG sing N N 304 SER CB HB2 sing N N 305 SER CB HB3 sing N N 306 SER OG HG sing N N 307 SER OXT HXT sing N N 308 THR N CA sing N N 309 THR N H sing N N 310 THR N H2 sing N N 311 THR CA C sing N N 312 THR CA CB sing N N 313 THR CA HA sing N N 314 THR C O doub N N 315 THR C OXT sing N N 316 THR CB OG1 sing N N 317 THR CB CG2 sing N N 318 THR CB HB sing N N 319 THR OG1 HG1 sing N N 320 THR CG2 HG21 sing N N 321 THR CG2 HG22 sing N N 322 THR CG2 HG23 sing N N 323 THR OXT HXT sing N N 324 TRP N CA sing N N 325 TRP N H sing N N 326 TRP N H2 sing N N 327 TRP CA C sing N N 328 TRP CA CB sing N N 329 TRP CA HA sing N N 330 TRP C O doub N N 331 TRP C OXT sing N N 332 TRP CB CG sing N N 333 TRP CB HB2 sing N N 334 TRP CB HB3 sing N N 335 TRP CG CD1 doub Y N 336 TRP CG CD2 sing Y N 337 TRP CD1 NE1 sing Y N 338 TRP CD1 HD1 sing N N 339 TRP CD2 CE2 doub Y N 340 TRP CD2 CE3 sing Y N 341 TRP NE1 CE2 sing Y N 342 TRP NE1 HE1 sing N N 343 TRP CE2 CZ2 sing Y N 344 TRP CE3 CZ3 doub Y N 345 TRP CE3 HE3 sing N N 346 TRP CZ2 CH2 doub Y N 347 TRP CZ2 HZ2 sing N N 348 TRP CZ3 CH2 sing Y N 349 TRP CZ3 HZ3 sing N N 350 TRP CH2 HH2 sing N N 351 TRP OXT HXT sing N N 352 TYR N CA sing N N 353 TYR N H sing N N 354 TYR N H2 sing N N 355 TYR CA C sing N N 356 TYR CA CB sing N N 357 TYR CA HA sing N N 358 TYR C O doub N N 359 TYR C OXT sing N N 360 TYR CB CG sing N N 361 TYR CB HB2 sing N N 362 TYR CB HB3 sing N N 363 TYR CG CD1 doub Y N 364 TYR CG CD2 sing Y N 365 TYR CD1 CE1 sing Y N 366 TYR CD1 HD1 sing N N 367 TYR CD2 CE2 doub Y N 368 TYR CD2 HD2 sing N N 369 TYR CE1 CZ doub Y N 370 TYR CE1 HE1 sing N N 371 TYR CE2 CZ sing Y N 372 TYR CE2 HE2 sing N N 373 TYR CZ OH sing N N 374 TYR OH HH sing N N 375 TYR OXT HXT sing N N 376 VAL N CA sing N N 377 VAL N H sing N N 378 VAL N H2 sing N N 379 VAL CA C sing N N 380 VAL CA CB sing N N 381 VAL CA HA sing N N 382 VAL C O doub N N 383 VAL C OXT sing N N 384 VAL CB CG1 sing N N 385 VAL CB CG2 sing N N 386 VAL CB HB sing N N 387 VAL CG1 HG11 sing N N 388 VAL CG1 HG12 sing N N 389 VAL CG1 HG13 sing N N 390 VAL CG2 HG21 sing N N 391 VAL CG2 HG22 sing N N 392 VAL CG2 HG23 sing N N 393 VAL OXT HXT sing N N 394 # _atom_sites.entry_id 1F8Y _atom_sites.fract_transf_matrix[1][1] 0.006684 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006684 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006684 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_