HEADER TRANSCRIPTION 17-AUG-00 1FMH TITLE NMR SOLUTION STRUCTURE OF A DESIGNED HETERODIMERIC LEUCINE ZIPPER COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENERAL CONTROL PROTEIN GCN4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LEUCINE ZIPPER ACIDIC CHAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GENERAL CONTROL PROTEIN GCN4; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: LEUCINE ZIPPER BASIC CHAIN; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHETIC PEPTIDE BASED ON THE SEQUENCE OF THE SOURCE 4 LEUCINE ZIPPER DOMAIN IN GCN4 (BAKER'S YEAST); SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 OTHER_DETAILS: SYNTHETIC PEPTIDE BASED ON THE SEQUENCE OF THE SOURCE 8 LEUCINE ZIPPER DOMAIN IN GCN4 (BAKER'S YEAST) KEYWDS COILED COIL, LEUCINE ZIPPER, INTER-HELICAL ION PAIRING, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR D.N.MARTI,I.JELESAROV,H.R.BOSSHARD REVDAT 3 03-NOV-21 1FMH 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1FMH 1 VERSN REVDAT 1 01-NOV-00 1FMH 0 JRNL AUTH D.N.MARTI,I.JELESAROV,H.R.BOSSHARD JRNL TITL INTERHELICAL ION PAIRING IN COILED COILS: SOLUTION STRUCTURE JRNL TITL 2 OF A HETERODIMERIC LEUCINE ZIPPER AND DETERMINATION OF PKA JRNL TITL 3 VALUES OF GLU SIDE CHAINS. JRNL REF BIOCHEMISTRY V. 39 12804 2000 JRNL REFN ISSN 0006-2960 JRNL PMID 11041845 JRNL DOI 10.1021/BI001242E REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.JELESAROV,H.R.BOSSHARD REMARK 1 TITL THERMODYNAMIC CHARACTERIZATION OF THE COUPLED FOLDING AND REMARK 1 TITL 2 ASSOCIATION OF HETERODIMERIC COILED COILS (LEUCINE ZIPPERS) REMARK 1 REF J.MOL.BIOL. V. 263 344 1996 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1996.0579 REMARK 1 REFERENCE 2 REMARK 1 AUTH E.DURR,I.JELESAROV,H.R.BOSSHARD REMARK 1 TITL EXTREMELY FAST FOLDING OF A VERY STABLE LEUCINE ZIPPER WITH REMARK 1 TITL 2 A STRENGTHENED HYDROPHOBIC CORE AND LACKING ELECTROSTATIC REMARK 1 TITL 3 INTERACTIONS BETWEEN HELICES REMARK 1 REF BIOCHEMISTRY V. 38 870 1999 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI981891E REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, X-PLOR 3.851 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES WERE CALCULATED ON THE BASIS REMARK 3 OF 1494 NOE DERIVED DISTANCE CONSTRAINTS AND 52 PHI ANGLE REMARK 3 RESTRAINTS REMARK 4 REMARK 4 1FMH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-00. REMARK 100 THE DEPOSITION ID IS D_1000011714. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 5.65 REMARK 210 IONIC STRENGTH : 10 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.1 MM AB ZIPPER; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY; 2D TOCSY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 98, X-PLOR 3.851 REMARK 210 METHOD USED : 1. DISTANCE REMARK 210 GEOMETRY/REGULARIZATION, 2. REMARK 210 SIMULATED ANNEALING, 3. REMARK 210 MOLECULAR DYNAMICS SIMULATION REMARK 210 INCLUDING 8 ANGSTROMS WATER SHELL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 14 REMARK 210 REMARK 210 REMARK: STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR REMARK 210 TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 GLU A 1 HG3 GLN A 4 1.25 REMARK 500 OE2 GLU A 8 HZ3 LYS B 13 1.58 REMARK 500 OE2 GLU A 13 HH21 ARG B 8 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 30 -73.09 -114.91 REMARK 500 1 CYS B 30 46.63 -149.41 REMARK 500 2 CYS B 30 -66.82 -137.04 REMARK 500 3 CYS B 30 -66.52 -147.28 REMARK 500 5 CYS A 30 -70.74 -142.84 REMARK 500 5 CYS B 30 -76.17 -163.54 REMARK 500 6 CYS B 30 -59.27 -137.64 REMARK 500 7 CYS A 30 52.32 -107.71 REMARK 500 8 CYS B 30 -62.37 -140.15 REMARK 500 11 CYS B 30 -73.08 -131.60 REMARK 500 15 CYS B 30 -63.06 -129.13 REMARK 500 16 CYS B 30 49.99 -140.35 REMARK 500 17 CYS B 30 -46.81 -142.01 REMARK 500 21 CYS B 30 -70.63 -155.45 REMARK 500 23 CYS B 30 -63.94 -134.72 REMARK 500 24 CYS B 30 -81.50 -136.33 REMARK 500 25 CYS B 30 -63.25 -136.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 A 32 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 B 32 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZTA RELATED DB: PDB REMARK 900 2ZTA IS GCN4 HOMODIMERIC LEUCINE ZIPPER REMARK 900 RELATED ID: 1JUN RELATED DB: PDB REMARK 900 1JUN IS C-JUN HOMODIMERIC LEUCINE ZIPPER REMARK 900 RELATED ID: 2A93 RELATED DB: PDB REMARK 900 2A93 IS C-MYC-MAX HETERODIMERIC LEUCINE ZIPPER DBREF 1FMH A 1 31 UNP P03069 GCN4_YEAST 249 279 DBREF 1FMH B 1 31 UNP P03069 GCN4_YEAST 249 279 SEQADV 1FMH GLU A 1 UNP P03069 ARG 249 ENGINEERED MUTATION SEQADV 1FMH VAL A 2 UNP P03069 MET 250 ENGINEERED MUTATION SEQADV 1FMH ALA A 3 UNP P03069 LYS 251 ENGINEERED MUTATION SEQADV 1FMH LYS A 7 UNP P03069 ASP 255 ENGINEERED MUTATION SEQADV 1FMH GLU A 8 UNP P03069 LYS 256 ENGINEERED MUTATION SEQADV 1FMH ALA A 10 UNP P03069 GLU 258 ENGINEERED MUTATION SEQADV 1FMH GLN A 11 UNP P03069 GLU 259 ENGINEERED MUTATION SEQADV 1FMH ALA A 12 UNP P03069 LEU 260 ENGINEERED MUTATION SEQADV 1FMH GLU A 13 UNP P03069 LEU 261 ENGINEERED MUTATION SEQADV 1FMH ALA A 14 UNP P03069 SER 262 ENGINEERED MUTATION SEQADV 1FMH GLU A 15 UNP P03069 LYS 263 ENGINEERED MUTATION SEQADV 1FMH GLN A 18 UNP P03069 HIS 266 ENGINEERED MUTATION SEQADV 1FMH GLN A 21 UNP P03069 ASN 269 ENGINEERED MUTATION SEQADV 1FMH GLN A 25 UNP P03069 ARG 273 ENGINEERED MUTATION SEQADV 1FMH GLU A 27 UNP P03069 LYS 275 ENGINEERED MUTATION SEQADV 1FMH HIS A 28 UNP P03069 LYS 276 ENGINEERED MUTATION SEQADV 1FMH GLU A 29 UNP P03069 LEU 277 ENGINEERED MUTATION SEQADV 1FMH CYS A 30 UNP P03069 VAL 278 ENGINEERED MUTATION SEQADV 1FMH GLU B 1 UNP P03069 ARG 249 ENGINEERED MUTATION SEQADV 1FMH VAL B 2 UNP P03069 MET 250 ENGINEERED MUTATION SEQADV 1FMH GLN B 3 UNP P03069 LYS 251 ENGINEERED MUTATION SEQADV 1FMH ALA B 4 UNP P03069 GLN 252 ENGINEERED MUTATION SEQADV 1FMH LYS B 6 UNP P03069 GLU 254 ENGINEERED MUTATION SEQADV 1FMH LYS B 7 UNP P03069 ASP 255 ENGINEERED MUTATION SEQADV 1FMH ARG B 8 UNP P03069 LYS 256 ENGINEERED MUTATION SEQADV 1FMH GLN B 10 UNP P03069 GLU 258 ENGINEERED MUTATION SEQADV 1FMH ALA B 11 UNP P03069 GLU 259 ENGINEERED MUTATION SEQADV 1FMH LYS B 13 UNP P03069 LEU 261 ENGINEERED MUTATION SEQADV 1FMH ALA B 14 UNP P03069 SER 262 ENGINEERED MUTATION SEQADV 1FMH ARG B 15 UNP P03069 LYS 263 ENGINEERED MUTATION SEQADV 1FMH ALA B 18 UNP P03069 HIS 266 ENGINEERED MUTATION SEQADV 1FMH ALA B 19 UNP P03069 LEU 267 ENGINEERED MUTATION SEQADV 1FMH LYS B 20 UNP P03069 GLU 268 ENGINEERED MUTATION SEQADV 1FMH GLN B 21 UNP P03069 ASN 269 ENGINEERED MUTATION SEQADV 1FMH LYS B 22 UNP P03069 GLU 270 ENGINEERED MUTATION SEQADV 1FMH GLN B 24 UNP P03069 ALA 272 ENGINEERED MUTATION SEQADV 1FMH ALA B 25 UNP P03069 ARG 273 ENGINEERED MUTATION SEQADV 1FMH ARG B 27 UNP P03069 LYS 275 ENGINEERED MUTATION SEQADV 1FMH HIS B 28 UNP P03069 LYS 276 ENGINEERED MUTATION SEQADV 1FMH LYS B 29 UNP P03069 LEU 277 ENGINEERED MUTATION SEQADV 1FMH CYS B 30 UNP P03069 VAL 278 ENGINEERED MUTATION SEQRES 1 A 33 ACE GLU VAL ALA GLN LEU GLU LYS GLU VAL ALA GLN ALA SEQRES 2 A 33 GLU ALA GLU ASN TYR GLN LEU GLU GLN GLU VAL ALA GLN SEQRES 3 A 33 LEU GLU HIS GLU CYS GLY NH2 SEQRES 1 B 33 ACE GLU VAL GLN ALA LEU LYS LYS ARG VAL GLN ALA LEU SEQRES 2 B 33 LYS ALA ARG ASN TYR ALA ALA LYS GLN LYS VAL GLN ALA SEQRES 3 B 33 LEU ARG HIS LYS CYS GLY NH2 HET ACE A 0 6 HET NH2 A 32 3 HET ACE B 0 6 HET NH2 B 32 3 HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP FORMUL 1 ACE 2(C2 H4 O) FORMUL 1 NH2 2(H2 N) HELIX 1 1 GLU A 1 CYS A 30 1 30 HELIX 2 2 GLU B 1 GLY B 31 1 31 SSBOND 1 CYS A 30 CYS B 30 1555 1555 2.03 LINK C ACE A 0 N GLU A 1 1555 1555 1.33 LINK C GLY A 31 N NH2 A 32 1555 1555 1.33 LINK C ACE B 0 N GLU B 1 1555 1555 1.32 LINK C GLY B 31 N NH2 B 32 1555 1555 1.33 SITE 1 AC3 2 CYS A 30 GLY A 31 SITE 1 AC4 2 CYS B 30 GLY B 31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 HETATM 1 C ACE A 0 -19.571 0.252 -5.703 1.00 0.00 C HETATM 2 O ACE A 0 -20.195 0.777 -4.778 1.00 0.00 O HETATM 3 CH3 ACE A 0 -18.847 1.104 -6.742 1.00 0.00 C HETATM 4 H1 ACE A 0 -19.398 2.019 -6.900 1.00 0.00 H HETATM 5 H2 ACE A 0 -18.782 0.553 -7.668 1.00 0.00 H HETATM 6 H3 ACE A 0 -17.855 1.334 -6.384 1.00 0.00 H