HEADER CELL CYCLE 22-AUG-00 1FNN TITLE CRYSTAL STRUCTURE OF CDC6P FROM PYROBACULUM AEROPHILUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION CONTROL PROTEIN 6; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CDC6P; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROBACULUM AEROPHILUM; SOURCE 3 ORGANISM_TAXID: 13773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PLASMID PET28B KEYWDS CDC6, CDC18, ORC1, AAA PROTEIN, DNA REPLICATION INITATION FACTOR, KEYWDS 2 CELL CYCLE CONTROL FACTOR, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR J.LIU,C.L.SMITH,D.DERYCKERE,K.DEANGELIS,G.S.MARTIN,J.M.BERGER REVDAT 3 07-FEB-24 1FNN 1 REMARK LINK REVDAT 2 24-FEB-09 1FNN 1 VERSN REVDAT 1 04-OCT-00 1FNN 0 JRNL AUTH J.LIU,C.L.SMITH,D.DERYCKERE,K.DEANGELIS,G.S.MARTIN, JRNL AUTH 2 J.M.BERGER JRNL TITL STRUCTURE AND FUNCTION OF CDC6/CDC18: IMPLICATIONS FOR JRNL TITL 2 ORIGIN RECOGNITION AND CHECKPOINT CONTROL. JRNL REF MOL.CELL V. 6 637 2000 JRNL REFN ISSN 1097-2765 JRNL PMID 11030343 JRNL DOI 10.1016/S1097-2765(00)00062-9 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 97721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8852 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6088 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 327 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.014 ; NULL REMARK 3 ANGLE DISTANCE (A) : 1.900 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FNN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-SEP-00. REMARK 100 THE DEPOSITION ID IS D_1000011744. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9611 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 106577 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28500 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM CACODYLATE PH 6.5, 100 MM NACL, REMARK 280 20 MM MG (OAC)2, 6 % MPD, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.40000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.80000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 LYS A 353 REMARK 465 ARG A 354 REMARK 465 GLY A 355 REMARK 465 GLU A 356 REMARK 465 GLY A 357 REMARK 465 VAL A 358 REMARK 465 ARG A 359 REMARK 465 GLY A 360 REMARK 465 ARG A 361 REMARK 465 MET B 0 REMARK 465 LYS B 353 REMARK 465 ARG B 354 REMARK 465 GLY B 355 REMARK 465 GLU B 356 REMARK 465 GLY B 357 REMARK 465 VAL B 358 REMARK 465 ARG B 359 REMARK 465 GLY B 360 REMARK 465 ARG B 361 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 6 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 45 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG A 51 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 51 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 61 CD - NE - CZ ANGL. DEV. = 12.7 DEGREES REMARK 500 ARG A 61 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 74 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 103 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 104 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 146 CD - NE - CZ ANGL. DEV. = 12.8 DEGREES REMARK 500 ARG A 146 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 158 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 179 CD - NE - CZ ANGL. DEV. = 13.4 DEGREES REMARK 500 ARG A 240 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 240 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 258 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 327 CD - NE - CZ ANGL. DEV. = 12.4 DEGREES REMARK 500 ARG A 327 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 327 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 342 CD - NE - CZ ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG A 342 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 350 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG A 350 CD - NE - CZ ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG A 388 CG - CD - NE ANGL. DEV. = 13.5 DEGREES REMARK 500 ASP B 6 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 17 CD - NE - CZ ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG B 37 CD - NE - CZ ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG B 37 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG B 37 NE - CZ - NH2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG B 45 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG B 45 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG B 51 NE - CZ - NH2 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG B 61 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 74 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 74 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 84 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 103 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 158 NE - CZ - NH2 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG B 240 CD - NE - CZ ANGL. DEV. = 11.3 DEGREES REMARK 500 ARG B 240 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 248 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG B 248 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 VAL B 273 N - CA - CB ANGL. DEV. = -13.8 DEGREES REMARK 500 ARG B 298 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 TYR B 317 CB - CG - CD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 TYR B 317 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 388 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 185 61.76 -115.68 REMARK 500 ASN B 38 85.48 -153.82 REMARK 500 GLU B 150 66.70 -66.50 REMARK 500 ALA B 156 171.69 175.71 REMARK 500 TYR B 185 53.74 -68.93 REMARK 500 ARG B 236 -169.61 -120.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 211 10.72 REMARK 500 ILE A 225 11.02 REMARK 500 GLY A 227 10.18 REMARK 500 LYS A 259 12.80 REMARK 500 VAL A 281 -11.72 REMARK 500 ALA A 295 11.37 REMARK 500 THR A 305 11.84 REMARK 500 GLU A 314 -10.39 REMARK 500 LYS A 381 10.68 REMARK 500 VAL B 4 12.19 REMARK 500 LYS B 70 10.54 REMARK 500 ILE B 82 10.41 REMARK 500 MET B 126 -11.17 REMARK 500 ASN B 167 -10.23 REMARK 500 LEU B 232 -11.08 REMARK 500 LYS B 271 -14.47 REMARK 500 LEU B 285 -10.33 REMARK 500 THR B 349 -10.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 390 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 57 OG1 REMARK 620 2 ADP A 398 O1B 97.6 REMARK 620 3 HOH A 403 O 87.6 173.1 REMARK 620 4 HOH A 407 O 89.1 93.6 91.0 REMARK 620 5 HOH A 420 O 171.8 90.5 84.3 90.0 REMARK 620 6 HOH A 426 O 87.7 97.9 77.8 168.4 91.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 391 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 57 OG1 REMARK 620 2 ADP B 399 O1B 97.7 REMARK 620 3 HOH B 415 O 95.2 97.2 REMARK 620 4 HOH B 419 O 173.3 87.2 88.6 REMARK 620 5 HOH B 420 O 89.7 91.6 169.3 85.6 REMARK 620 6 HOH B 421 O 86.3 175.9 83.3 88.8 87.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 390 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 391 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 399 DBREF 1FNN A 0 388 UNP Q8ZYK1 Q8ZYK1_PYRAE 1 389 DBREF 1FNN B 0 388 UNP Q8ZYK1 Q8ZYK1_PYRAE 1 389 SEQRES 1 A 389 MET ALA ILE VAL VAL ASP ASP SER VAL PHE SER PRO SER SEQRES 2 A 389 TYR VAL PRO LYS ARG LEU PRO HIS ARG GLU GLN GLN LEU SEQRES 3 A 389 GLN GLN LEU ASP ILE LEU LEU GLY ASN TRP LEU ARG ASN SEQRES 4 A 389 PRO GLY HIS HIS TYR PRO ARG ALA THR LEU LEU GLY ARG SEQRES 5 A 389 PRO GLY THR GLY LYS THR VAL THR LEU ARG LYS LEU TRP SEQRES 6 A 389 GLU LEU TYR LYS ASP LYS THR THR ALA ARG PHE VAL TYR SEQRES 7 A 389 ILE ASN GLY PHE ILE TYR ARG ASN PHE THR ALA ILE ILE SEQRES 8 A 389 GLY GLU ILE ALA ARG SER LEU ASN ILE PRO PHE PRO ARG SEQRES 9 A 389 ARG GLY LEU SER ARG ASP GLU PHE LEU ALA LEU LEU VAL SEQRES 10 A 389 GLU HIS LEU ARG GLU ARG ASP LEU TYR MET PHE LEU VAL SEQRES 11 A 389 LEU ASP ASP ALA PHE ASN LEU ALA PRO ASP ILE LEU SER SEQRES 12 A 389 THR PHE ILE ARG LEU GLY GLN GLU ALA ASP LYS LEU GLY SEQRES 13 A 389 ALA PHE ARG ILE ALA LEU VAL ILE VAL GLY HIS ASN ASP SEQRES 14 A 389 ALA VAL LEU ASN ASN LEU ASP PRO SER THR ARG GLY ILE SEQRES 15 A 389 MET GLY LYS TYR VAL ILE ARG PHE SER PRO TYR THR LYS SEQRES 16 A 389 ASP GLN ILE PHE ASP ILE LEU LEU ASP ARG ALA LYS ALA SEQRES 17 A 389 GLY LEU ALA GLU GLY SER TYR SER GLU ASP ILE LEU GLN SEQRES 18 A 389 MET ILE ALA ASP ILE THR GLY ALA GLN THR PRO LEU ASP SEQRES 19 A 389 THR ASN ARG GLY ASP ALA ARG LEU ALA ILE ASP ILE LEU SEQRES 20 A 389 TYR ARG SER ALA TYR ALA ALA GLN GLN ASN GLY ARG LYS SEQRES 21 A 389 HIS ILE ALA PRO GLU ASP VAL ARG LYS SER SER LYS GLU SEQRES 22 A 389 VAL LEU PHE GLY ILE SER GLU GLU VAL LEU ILE GLY LEU SEQRES 23 A 389 PRO LEU HIS GLU LYS LEU PHE LEU LEU ALA ILE VAL ARG SEQRES 24 A 389 SER LEU LYS ILE SER HIS THR PRO TYR ILE THR PHE GLY SEQRES 25 A 389 ASP ALA GLU GLU SER TYR LYS ILE VAL CYS GLU GLU TYR SEQRES 26 A 389 GLY GLU ARG PRO ARG VAL HIS SER GLN LEU TRP SER TYR SEQRES 27 A 389 LEU ASN ASP LEU ARG GLU LYS GLY ILE VAL GLU THR ARG SEQRES 28 A 389 GLN ASN LYS ARG GLY GLU GLY VAL ARG GLY ARG THR THR SEQRES 29 A 389 LEU ILE SER ILE GLY THR GLU PRO LEU ASP THR LEU GLU SEQRES 30 A 389 ALA VAL ILE THR LYS LEU ILE LYS GLU GLU LEU ARG SEQRES 1 B 389 MET ALA ILE VAL VAL ASP ASP SER VAL PHE SER PRO SER SEQRES 2 B 389 TYR VAL PRO LYS ARG LEU PRO HIS ARG GLU GLN GLN LEU SEQRES 3 B 389 GLN GLN LEU ASP ILE LEU LEU GLY ASN TRP LEU ARG ASN SEQRES 4 B 389 PRO GLY HIS HIS TYR PRO ARG ALA THR LEU LEU GLY ARG SEQRES 5 B 389 PRO GLY THR GLY LYS THR VAL THR LEU ARG LYS LEU TRP SEQRES 6 B 389 GLU LEU TYR LYS ASP LYS THR THR ALA ARG PHE VAL TYR SEQRES 7 B 389 ILE ASN GLY PHE ILE TYR ARG ASN PHE THR ALA ILE ILE SEQRES 8 B 389 GLY GLU ILE ALA ARG SER LEU ASN ILE PRO PHE PRO ARG SEQRES 9 B 389 ARG GLY LEU SER ARG ASP GLU PHE LEU ALA LEU LEU VAL SEQRES 10 B 389 GLU HIS LEU ARG GLU ARG ASP LEU TYR MET PHE LEU VAL SEQRES 11 B 389 LEU ASP ASP ALA PHE ASN LEU ALA PRO ASP ILE LEU SER SEQRES 12 B 389 THR PHE ILE ARG LEU GLY GLN GLU ALA ASP LYS LEU GLY SEQRES 13 B 389 ALA PHE ARG ILE ALA LEU VAL ILE VAL GLY HIS ASN ASP SEQRES 14 B 389 ALA VAL LEU ASN ASN LEU ASP PRO SER THR ARG GLY ILE SEQRES 15 B 389 MET GLY LYS TYR VAL ILE ARG PHE SER PRO TYR THR LYS SEQRES 16 B 389 ASP GLN ILE PHE ASP ILE LEU LEU ASP ARG ALA LYS ALA SEQRES 17 B 389 GLY LEU ALA GLU GLY SER TYR SER GLU ASP ILE LEU GLN SEQRES 18 B 389 MET ILE ALA ASP ILE THR GLY ALA GLN THR PRO LEU ASP SEQRES 19 B 389 THR ASN ARG GLY ASP ALA ARG LEU ALA ILE ASP ILE LEU SEQRES 20 B 389 TYR ARG SER ALA TYR ALA ALA GLN GLN ASN GLY ARG LYS SEQRES 21 B 389 HIS ILE ALA PRO GLU ASP VAL ARG LYS SER SER LYS GLU SEQRES 22 B 389 VAL LEU PHE GLY ILE SER GLU GLU VAL LEU ILE GLY LEU SEQRES 23 B 389 PRO LEU HIS GLU LYS LEU PHE LEU LEU ALA ILE VAL ARG SEQRES 24 B 389 SER LEU LYS ILE SER HIS THR PRO TYR ILE THR PHE GLY SEQRES 25 B 389 ASP ALA GLU GLU SER TYR LYS ILE VAL CYS GLU GLU TYR SEQRES 26 B 389 GLY GLU ARG PRO ARG VAL HIS SER GLN LEU TRP SER TYR SEQRES 27 B 389 LEU ASN ASP LEU ARG GLU LYS GLY ILE VAL GLU THR ARG SEQRES 28 B 389 GLN ASN LYS ARG GLY GLU GLY VAL ARG GLY ARG THR THR SEQRES 29 B 389 LEU ILE SER ILE GLY THR GLU PRO LEU ASP THR LEU GLU SEQRES 30 B 389 ALA VAL ILE THR LYS LEU ILE LYS GLU GLU LEU ARG HET MG A 390 1 HET ADP A 398 27 HET MG B 391 1 HET ADP B 399 27 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 ADP 2(C10 H15 N5 O10 P2) FORMUL 7 HOH *327(H2 O) HELIX 1 1 ASP A 5 SER A 10 5 6 HELIX 2 2 ARG A 21 ASN A 38 1 18 HELIX 3 3 GLY A 55 LYS A 68 1 14 HELIX 4 4 ASN A 85 LEU A 97 1 13 HELIX 5 5 SER A 107 ARG A 122 1 16 HELIX 6 6 ASP A 132 LEU A 136 5 5 HELIX 7 7 ALA A 137 GLY A 148 1 12 HELIX 8 8 GLU A 150 GLY A 155 1 6 HELIX 9 9 ASP A 168 ASN A 173 1 6 HELIX 10 10 ASP A 175 GLY A 183 1 9 HELIX 11 11 THR A 193 LEU A 209 1 17 HELIX 12 12 SER A 215 GLY A 227 1 13 HELIX 13 13 ASP A 238 ASN A 256 1 19 HELIX 14 14 ALA A 262 LEU A 274 1 13 HELIX 15 15 SER A 278 LEU A 285 1 8 HELIX 16 16 PRO A 286 HIS A 304 1 19 HELIX 17 17 PHE A 310 TYR A 324 1 15 HELIX 18 18 VAL A 330 LYS A 344 1 15 HELIX 19 19 PRO A 371 LEU A 387 1 17 HELIX 20 20 ASP B 5 SER B 10 5 6 HELIX 21 21 ARG B 21 ASN B 38 1 18 HELIX 22 22 GLY B 55 LYS B 68 1 14 HELIX 23 23 ASN B 85 ASN B 98 1 14 HELIX 24 24 SER B 107 ARG B 122 1 16 HELIX 25 25 ASP B 132 LEU B 136 5 5 HELIX 26 26 ALA B 137 GLY B 148 1 12 HELIX 27 27 GLU B 150 GLY B 155 1 6 HELIX 28 28 ASP B 168 ASN B 173 1 6 HELIX 29 29 ASP B 175 GLY B 183 1 9 HELIX 30 30 THR B 193 LEU B 209 1 17 HELIX 31 31 SER B 215 GLY B 227 1 13 HELIX 32 32 ASP B 238 ASN B 256 1 19 HELIX 33 33 ALA B 262 LEU B 274 1 13 HELIX 34 34 SER B 278 GLY B 284 1 7 HELIX 35 35 PRO B 286 HIS B 304 1 19 HELIX 36 36 PHE B 310 TYR B 324 1 15 HELIX 37 37 VAL B 330 LYS B 344 1 15 HELIX 38 38 PRO B 371 LEU B 387 1 17 SHEET 1 A 5 ARG A 74 ASN A 79 0 SHEET 2 A 5 MET A 126 ASP A 131 1 N PHE A 127 O ARG A 74 SHEET 3 A 5 ILE A 159 GLY A 165 1 O ALA A 160 N LEU A 128 SHEET 4 A 5 ARG A 45 LEU A 49 1 O ALA A 46 N ILE A 163 SHEET 5 A 5 VAL A 186 ARG A 188 1 N ILE A 187 O THR A 47 SHEET 1 B 3 ILE A 308 THR A 309 0 SHEET 2 B 3 THR A 363 SER A 366 -1 N ILE A 365 O ILE A 308 SHEET 3 B 3 GLU A 348 GLN A 351 -1 N GLU A 348 O SER A 366 SHEET 1 C 5 ARG B 74 ASN B 79 0 SHEET 2 C 5 MET B 126 ASP B 131 1 O PHE B 127 N VAL B 76 SHEET 3 C 5 ILE B 159 GLY B 165 1 O ALA B 160 N LEU B 128 SHEET 4 C 5 ARG B 45 LEU B 49 1 O ALA B 46 N ILE B 163 SHEET 5 C 5 VAL B 186 ARG B 188 1 N ILE B 187 O THR B 47 SHEET 1 D 3 ILE B 308 THR B 309 0 SHEET 2 D 3 THR B 363 SER B 366 -1 N ILE B 365 O ILE B 308 SHEET 3 D 3 GLU B 348 GLN B 351 -1 N GLU B 348 O SER B 366 LINK OG1 THR A 57 MG MG A 390 1555 1555 2.12 LINK MG MG A 390 O1B ADP A 398 1555 1555 1.88 LINK MG MG A 390 O HOH A 403 1555 1555 2.08 LINK MG MG A 390 O HOH A 407 1555 1555 2.06 LINK MG MG A 390 O HOH A 420 1555 1555 2.21 LINK MG MG A 390 O HOH A 426 1555 1555 2.22 LINK OG1 THR B 57 MG MG B 391 1555 1555 2.07 LINK MG MG B 391 O1B ADP B 399 1555 1555 1.97 LINK MG MG B 391 O HOH B 415 1555 1555 2.04 LINK MG MG B 391 O HOH B 419 1555 1555 2.03 LINK MG MG B 391 O HOH B 420 1555 1555 2.08 LINK MG MG B 391 O HOH B 421 1555 1555 2.21 SITE 1 AC1 6 THR A 57 ADP A 398 HOH A 403 HOH A 407 SITE 2 AC1 6 HOH A 420 HOH A 426 SITE 1 AC2 6 THR B 57 ADP B 399 HOH B 415 HOH B 419 SITE 2 AC2 6 HOH B 420 HOH B 421 SITE 1 AC3 25 TYR A 13 PRO A 15 LEU A 18 PRO A 19 SITE 2 AC3 25 ARG A 21 GLY A 53 THR A 54 GLY A 55 SITE 3 AC3 25 LYS A 56 THR A 57 VAL A 58 TYR A 192 SITE 4 AC3 25 ILE A 200 ARG A 204 ALA A 239 ILE A 243 SITE 5 AC3 25 MG A 390 HOH A 407 HOH A 408 HOH A 419 SITE 6 AC3 25 HOH A 420 HOH A 426 HOH A 430 HOH A 453 SITE 7 AC3 25 HOH A 508 SITE 1 AC4 24 TYR B 13 LEU B 18 PRO B 19 ARG B 21 SITE 2 AC4 24 GLY B 53 THR B 54 GLY B 55 LYS B 56 SITE 3 AC4 24 THR B 57 VAL B 58 TYR B 192 ILE B 200 SITE 4 AC4 24 ARG B 204 ALA B 239 ILE B 243 MG B 391 SITE 5 AC4 24 HOH B 401 HOH B 404 HOH B 415 HOH B 416 SITE 6 AC4 24 HOH B 419 HOH B 420 HOH B 444 HOH B 474 CRYST1 132.070 132.070 82.200 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007572 0.004372 0.000000 0.00000 SCALE2 0.000000 0.008743 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012165 0.00000