data_1FVM # _entry.id 1FVM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1FVM pdb_00001fvm 10.2210/pdb1fvm/pdb RCSB RCSB011937 ? ? WWPDB D_1000011937 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1AA5 unspecified 'CRYSTAL STRUCTURE OF VANCOMYCIN' PDB 1C0Q unspecified 'CRYSTAL STRUCTURE OF VANCOMYCIN COMPLEXED WITH 2-ACETOXY-D-PROPANOIC ACID' PDB 1C0R unspecified 'CRYSTAL STRUCTURE OF VANCOMYCIN WITH D-LACTIC ACID' PDB 1GAC unspecified 'SOLUTION STRUCTURE OF A82846B COMPLEXED WITH ITS CELL WALL PENTAPEPTIDE FRAGMENT' PDB 1GHG unspecified 'CRYSTAL STRUCTURE OF VANCOMYCIN AGLYCON' PDB 1PN3 unspecified 'CRYSTAL STRUCTURE OF TDP-EPI-VANCOSAMINYLTRANSFERASE GTFA COMPLEXD WITH TDP AND DESVANCOSAMINYL VANCOMYCIN' PDB 1PNV unspecified 'CRYSTAL STRUCTURE OF TDP-EPI-VANCOSAMINYLTRANSFERASE GTFA COMPLEXED WITH TDP AND VANCOMYCIN' PDB 1QD8 unspecified 'CRYSTAL STRUCTURE OF VANCOMYCIN COMPLEXED WITH N-ACETYL GLYCIN' PDB 1RRV unspecified 'CRYSTAL STRUCTURE OF TDP-VANCOSAMINYLTRANSFERASE GTFD COMPLEXED WITH TDP AND DESVANCOSAMINYL VANCOMYCIN.' PDB 1SHO unspecified 'CRYSTAL STRUCTURE OF VANCOMYCIN' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1FVM _pdbx_database_status.recvd_initial_deposition_date 2000-09-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nitanai, Y.' 1 'Kakoi, K.' 2 'Aoki, K.' 3 # _citation.id primary _citation.title 'Crystal Structures of the Complexes between Vancomycin and Cell-Wall Precursor Analogs.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 385 _citation.page_first 1422 _citation.page_last ? _citation.year 2009 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18976660 _citation.pdbx_database_id_DOI 10.1016/J.JMB.2008.10.026 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nitanai, Y.' 1 ? primary 'Kikuchi, T.' 2 ? primary 'Kakoi, K.' 3 ? primary 'Hanamaki, S.' 4 ? primary 'Fujisawa, I.' 5 ? primary 'Aoki, K.' 6 ? # _cell.entry_id 1FVM _cell.length_a 35.637 _cell.length_b 36.425 _cell.length_c 65.728 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FVM _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn VANCOMYCIN 1149.977 6 ? ? ? ? 2 polymer syn DI-ACETYL-LYS-D-ALA-D-ALA 372.417 6 ? ? ? ? 3 branched man 'vancosamine-(1-2)-beta-D-glucopyranose' 323.340 6 ? ? ? ? 4 water nat water 18.015 112 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes '(MLU)(OMZ)N(GHP)(GHP)(OMY)(3FG)' XXNGGYX A,B,C,D,E,F ? 2 'polypeptide(L)' no yes '(DLS)(DAL)(DAL)' KAA G,H,I,J,K,L ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MLU n 1 2 OMZ n 1 3 ASN n 1 4 GHP n 1 5 GHP n 1 6 OMY n 1 7 3FG n 2 1 DLS n 2 2 DAL n 2 3 DAL n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'AMYCOLATOPSIS ORIENTALIS' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 31958 _pdbx_entity_src_syn.details 'SEQUENCE OCCURS IN NOCARDIA ORIENTALIS' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 NOR NOR00681 1 ? ? NOR00681 ? 2 PDB 1FVM 2 ? ? 1FVM ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1FVM A 1 ? 7 ? NOR00681 1 ? 7 ? 1 7 2 1 1FVM B 1 ? 7 ? NOR00681 1 ? 7 ? 1 7 3 1 1FVM C 1 ? 7 ? NOR00681 1 ? 7 ? 1 7 4 1 1FVM D 1 ? 7 ? NOR00681 1 ? 7 ? 1 7 5 1 1FVM E 1 ? 7 ? NOR00681 1 ? 7 ? 1 7 6 1 1FVM F 1 ? 7 ? NOR00681 1 ? 7 ? 1 7 7 2 1FVM G 1 ? 3 ? 1FVM 1 ? 3 ? 1 3 8 2 1FVM H 1 ? 3 ? 1FVM 1 ? 3 ? 1 3 9 2 1FVM I 1 ? 3 ? 1FVM 1 ? 3 ? 1 3 10 2 1FVM J 1 ? 3 ? 1FVM 1 ? 3 ? 1 3 11 2 1FVM K 1 ? 3 ? 1FVM 1 ? 3 ? 1 3 12 2 1FVM L 1 ? 3 ? 1FVM 1 ? 3 ? 1 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3FG 'L-peptide linking' . '(2S)-amino(3,5-dihydroxyphenyl)ethanoic acid' ? 'C8 H9 N O4' 183.161 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 BGC 'D-saccharide, beta linking' . beta-D-glucopyranose 'beta-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 DLS 'L-peptide linking' n DI-ACETYL-LYSINE ? 'C10 H18 N2 O4' 230.261 GHP 'D-peptide linking' . '(2R)-amino(4-hydroxyphenyl)ethanoic acid' ? 'C8 H9 N O3' 167.162 HOH non-polymer . WATER ? 'H2 O' 18.015 MLU 'D-peptide linking' . N-methyl-D-leucine ? 'C7 H15 N O2' 145.199 OMY 'L-peptide linking' n '(betaR)-3-chloro-beta-hydroxy-L-tyrosine' ? 'C9 H10 Cl N O4' 231.633 OMZ 'D-peptide linking' . '(betaR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE' ? 'C9 H10 Cl N O4' 231.633 RER 'L-saccharide, alpha linking' . vancosamine '(1R,3S,4S,5S)-3-amino-2,3,6-trideoxy-3-methyl-alpha-L-arabino-hexopyranose' 'C7 H15 N O3' 161.199 # _exptl.entry_id 1FVM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.95 _exptl_crystal.density_percent_sol 37.10 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;CRYSTALS WERE PREPARED AT 293K FROM A SOLUTION CONTAINING 6.6 MM VANCOMYCIN, 6.6 MM DI- ACETYL-LYS -D-ALA-D-ALA, 3.3 % (V/V) ETHANOL, AND 0.66 M TRIS BUFFER PH 8.5, BY EQUILIBRATING THE SOLUTION AGAINST A RESERVOIR SOLUTION CONTAINING 10 % (V/V) ETHANOL AND 0.2 M TRIS BUFFER PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K ; # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUAMTUM 4R' _diffrn_detector.pdbx_collection_date 2000-06-24 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'FOCUSSING SILICON CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-6A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-6A _diffrn_source.pdbx_wavelength 1.0000 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1FVM _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 25.500 _reflns.d_resolution_high 1.800 _reflns.number_obs 8400 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.04600 _reflns.pdbx_Rsym_value 0.04300 _reflns.pdbx_netI_over_sigmaI 11.7000 _reflns.B_iso_Wilson_estimate 6.80 _reflns.pdbx_redundancy 6.800 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.90 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.07200 _reflns_shell.pdbx_Rsym_value 0.06600 _reflns_shell.meanI_over_sigI_obs 8.500 _reflns_shell.pdbx_redundancy 6.30 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1FVM _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 7864 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 4.000 _refine.pdbx_data_cutoff_high_absF 1000000.000 _refine.pdbx_data_cutoff_low_absF 0.0010 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 5.00 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 99.0 _refine.ls_R_factor_obs 0.144 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.144 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 8.50 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1AA5' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1FVM _refine_analyze.Luzzati_coordinate_error_obs 0.13 _refine_analyze.Luzzati_sigma_a_obs 0.07 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 636 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 126 _refine_hist.number_atoms_solvent 112 _refine_hist.number_atoms_total 874 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 5.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.05 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 0.76 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.34 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? 1.500 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? 2.000 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 1.350 2.000 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 1.970 2.500 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.83 _refine_ls_shell.number_reflns_R_work 382 _refine_ls_shell.R_factor_R_work 0.1480 _refine_ls_shell.percent_reflns_obs 95.70 _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file PARAM19X.SOL _pdbx_xplor_file.topol_file TOPH19.SOL # _struct.entry_id 1FVM _struct.title 'Complex of vancomycin with DI-acetyl-LYS-D-ALA-D-ALA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1FVM _struct_keywords.pdbx_keywords PEPTIDE/ANTIBIOTIC _struct_keywords.text 'PEPTIDE-ANTIBIOTIC COMPLEX, GLYCOPEPTIDE, ANTIBIOTIC, VANCOMYCIN, CELL WALL PRECURSOR, STRUCTURAL PROTEIN-ANTIBIOTIC COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 3 ? S N N 4 ? T N N 4 ? U N N 4 ? V N N 4 ? W N N 4 ? X N N 4 ? Y N N 4 ? Z N N 4 ? AA N N 4 ? BA N N 4 ? CA N N 4 ? DA N N 4 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MLU 1 C ? ? ? 1_555 A OMZ 2 N ? ? A MLU 1 A OMZ 2 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale2 covale both ? A OMZ 2 C ? ? ? 1_555 A ASN 3 N ? ? A OMZ 2 A ASN 3 1_555 ? ? ? ? ? ? ? 1.357 ? ? covale3 covale none ? A OMZ 2 OH ? ? ? 1_555 A GHP 4 C5 ? ? A OMZ 2 A GHP 4 1_555 ? ? ? ? ? ? ? 1.411 ? ? covale4 covale both ? A ASN 3 C ? ? ? 1_555 A GHP 4 N ? ? A ASN 3 A GHP 4 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale5 covale both ? A GHP 4 C ? ? ? 1_555 A GHP 5 N ? ? A GHP 4 A GHP 5 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale6 covale none ? A GHP 4 C3 ? ? ? 1_555 A OMY 6 OCZ ? ? A GHP 4 A OMY 6 1_555 ? ? ? ? ? ? ? 1.399 ? ? covale7 covale one ? A GHP 4 O4 ? ? ? 1_555 M BGC . C1 ? ? A GHP 4 M BGC 1 1_555 ? ? ? ? ? ? ? 1.391 ? ? covale8 covale both ? A GHP 5 C ? ? ? 1_555 A OMY 6 N ? ? A GHP 5 A OMY 6 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale9 covale one ? A GHP 5 C3 ? ? ? 1_555 A 3FG 7 CG1 ? ? A GHP 5 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.501 ? ? covale10 covale both ? A OMY 6 C ? ? ? 1_555 A 3FG 7 N ? ? A OMY 6 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale11 covale both ? B MLU 1 C ? ? ? 1_555 B OMZ 2 N ? ? B MLU 1 B OMZ 2 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale12 covale both ? B OMZ 2 C ? ? ? 1_555 B ASN 3 N ? ? B OMZ 2 B ASN 3 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale13 covale none ? B OMZ 2 OH ? ? ? 1_555 B GHP 4 C5 ? ? B OMZ 2 B GHP 4 1_555 ? ? ? ? ? ? ? 1.400 ? ? covale14 covale both ? B ASN 3 C ? ? ? 1_555 B GHP 4 N ? ? B ASN 3 B GHP 4 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale15 covale both ? B GHP 4 C ? ? ? 1_555 B GHP 5 N ? ? B GHP 4 B GHP 5 1_555 ? ? ? ? ? ? ? 1.358 ? ? covale16 covale none ? B GHP 4 C3 ? ? ? 1_555 B OMY 6 OCZ ? ? B GHP 4 B OMY 6 1_555 ? ? ? ? ? ? ? 1.398 ? ? covale17 covale one ? B GHP 4 O4 ? ? ? 1_555 N BGC . C1 ? ? B GHP 4 N BGC 1 1_555 ? ? ? ? ? ? ? 1.410 ? ? covale18 covale both ? B GHP 5 C ? ? ? 1_555 B OMY 6 N ? ? B GHP 5 B OMY 6 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale19 covale one ? B GHP 5 C3 ? ? ? 1_555 B 3FG 7 CG1 ? ? B GHP 5 B 3FG 7 1_555 ? ? ? ? ? ? ? 1.513 ? ? covale20 covale both ? B OMY 6 C ? ? ? 1_555 B 3FG 7 N ? ? B OMY 6 B 3FG 7 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale21 covale both ? C MLU 1 C ? ? ? 1_555 C OMZ 2 N ? ? C MLU 1 C OMZ 2 1_555 ? ? ? ? ? ? ? 1.358 ? ? covale22 covale both ? C OMZ 2 C ? ? ? 1_555 C ASN 3 N ? ? C OMZ 2 C ASN 3 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale23 covale none ? C OMZ 2 OH ? ? ? 1_555 C GHP 4 C5 ? ? C OMZ 2 C GHP 4 1_555 ? ? ? ? ? ? ? 1.413 ? ? covale24 covale both ? C ASN 3 C ? ? ? 1_555 C GHP 4 N ? ? C ASN 3 C GHP 4 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale25 covale both ? C GHP 4 C ? ? ? 1_555 C GHP 5 N ? ? C GHP 4 C GHP 5 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale26 covale none ? C GHP 4 C3 ? ? ? 1_555 C OMY 6 OCZ ? ? C GHP 4 C OMY 6 1_555 ? ? ? ? ? ? ? 1.413 ? ? covale27 covale one ? C GHP 4 O4 ? ? ? 1_555 O BGC . C1 ? ? C GHP 4 O BGC 1 1_555 ? ? ? ? ? ? ? 1.401 ? ? covale28 covale both ? C GHP 5 C ? ? ? 1_555 C OMY 6 N ? ? C GHP 5 C OMY 6 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale29 covale one ? C GHP 5 C3 ? ? ? 1_555 C 3FG 7 CG1 ? ? C GHP 5 C 3FG 7 1_555 ? ? ? ? ? ? ? 1.492 ? ? covale30 covale both ? C OMY 6 C ? ? ? 1_555 C 3FG 7 N ? ? C OMY 6 C 3FG 7 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale31 covale both ? D MLU 1 C ? ? ? 1_555 D OMZ 2 N ? ? D MLU 1 D OMZ 2 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale32 covale both ? D OMZ 2 C ? ? ? 1_555 D ASN 3 N ? ? D OMZ 2 D ASN 3 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale33 covale none ? D OMZ 2 OH ? ? ? 1_555 D GHP 4 C5 ? ? D OMZ 2 D GHP 4 1_555 ? ? ? ? ? ? ? 1.411 ? ? covale34 covale both ? D ASN 3 C ? ? ? 1_555 D GHP 4 N ? ? D ASN 3 D GHP 4 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale35 covale both ? D GHP 4 C ? ? ? 1_555 D GHP 5 N ? ? D GHP 4 D GHP 5 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale36 covale none ? D GHP 4 C3 ? ? ? 1_555 D OMY 6 OCZ ? ? D GHP 4 D OMY 6 1_555 ? ? ? ? ? ? ? 1.397 ? ? covale37 covale one ? D GHP 4 O4 ? ? ? 1_555 P BGC . C1 ? ? D GHP 4 P BGC 1 1_555 ? ? ? ? ? ? ? 1.408 ? ? covale38 covale both ? D GHP 5 C ? ? ? 1_555 D OMY 6 N ? ? D GHP 5 D OMY 6 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale39 covale one ? D GHP 5 C3 ? ? ? 1_555 D 3FG 7 CG1 ? ? D GHP 5 D 3FG 7 1_555 ? ? ? ? ? ? ? 1.510 ? ? covale40 covale both ? D OMY 6 C ? ? ? 1_555 D 3FG 7 N ? ? D OMY 6 D 3FG 7 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale41 covale both ? E MLU 1 C ? ? ? 1_555 E OMZ 2 N ? ? E MLU 1 E OMZ 2 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale42 covale both ? E OMZ 2 C ? ? ? 1_555 E ASN 3 N ? ? E OMZ 2 E ASN 3 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale43 covale none ? E OMZ 2 OH ? ? ? 1_555 E GHP 4 C5 ? ? E OMZ 2 E GHP 4 1_555 ? ? ? ? ? ? ? 1.409 ? ? covale44 covale both ? E ASN 3 C ? ? ? 1_555 E GHP 4 N ? ? E ASN 3 E GHP 4 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale45 covale both ? E GHP 4 C ? ? ? 1_555 E GHP 5 N ? ? E GHP 4 E GHP 5 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale46 covale none ? E GHP 4 C3 ? ? ? 1_555 E OMY 6 OCZ ? ? E GHP 4 E OMY 6 1_555 ? ? ? ? ? ? ? 1.404 ? ? covale47 covale one ? E GHP 4 O4 ? ? ? 1_555 Q BGC . C1 ? ? E GHP 4 Q BGC 1 1_555 ? ? ? ? ? ? ? 1.391 ? ? covale48 covale both ? E GHP 5 C ? ? ? 1_555 E OMY 6 N ? ? E GHP 5 E OMY 6 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale49 covale one ? E GHP 5 C3 ? ? ? 1_555 E 3FG 7 CG1 ? ? E GHP 5 E 3FG 7 1_555 ? ? ? ? ? ? ? 1.509 ? ? covale50 covale both ? E OMY 6 C ? ? ? 1_555 E 3FG 7 N ? ? E OMY 6 E 3FG 7 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale51 covale both ? F MLU 1 C ? ? ? 1_555 F OMZ 2 N ? ? F MLU 1 F OMZ 2 1_555 ? ? ? ? ? ? ? 1.358 ? ? covale52 covale both ? F OMZ 2 C ? ? ? 1_555 F ASN 3 N ? ? F OMZ 2 F ASN 3 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale53 covale none ? F OMZ 2 OH ? ? ? 1_555 F GHP 4 C5 ? ? F OMZ 2 F GHP 4 1_555 ? ? ? ? ? ? ? 1.409 ? ? covale54 covale both ? F ASN 3 C ? ? ? 1_555 F GHP 4 N ? ? F ASN 3 F GHP 4 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale55 covale both ? F GHP 4 C ? ? ? 1_555 F GHP 5 N ? ? F GHP 4 F GHP 5 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale56 covale none ? F GHP 4 C3 ? ? ? 1_555 F OMY 6 OCZ ? ? F GHP 4 F OMY 6 1_555 ? ? ? ? ? ? ? 1.402 ? ? covale57 covale one ? F GHP 4 O4 ? ? ? 1_555 R BGC . C1 ? ? F GHP 4 R BGC 1 1_555 ? ? ? ? ? ? ? 1.403 ? ? covale58 covale both ? F GHP 5 C ? ? ? 1_555 F OMY 6 N ? ? F GHP 5 F OMY 6 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale59 covale one ? F GHP 5 C3 ? ? ? 1_555 F 3FG 7 CG1 ? ? F GHP 5 F 3FG 7 1_555 ? ? ? ? ? ? ? 1.498 ? ? covale60 covale both ? F OMY 6 C ? ? ? 1_555 F 3FG 7 N ? ? F OMY 6 F 3FG 7 1_555 ? ? ? ? ? ? ? 1.356 ? ? covale61 covale both ? G DLS 1 C ? ? ? 1_555 G DAL 2 N ? ? G DLS 1 G DAL 2 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale62 covale both ? G DAL 2 C ? ? ? 1_555 G DAL 3 N ? ? G DAL 2 G DAL 3 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale63 covale both ? H DLS 1 C ? ? ? 1_555 H DAL 2 N ? ? H DLS 1 H DAL 2 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale64 covale both ? H DAL 2 C ? ? ? 1_555 H DAL 3 N ? ? H DAL 2 H DAL 3 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale65 covale both ? I DLS 1 C ? ? ? 1_555 I DAL 2 N ? ? I DLS 1 I DAL 2 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale66 covale both ? I DAL 2 C ? ? ? 1_555 I DAL 3 N ? ? I DAL 2 I DAL 3 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale67 covale both ? J DLS 1 C ? ? ? 1_555 J DAL 2 N ? ? J DLS 1 J DAL 2 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale68 covale both ? J DAL 2 C ? ? ? 1_555 J DAL 3 N ? ? J DAL 2 J DAL 3 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale69 covale both ? K DLS 1 C ? ? ? 1_555 K DAL 2 N ? ? K DLS 1 K DAL 2 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale70 covale both ? K DAL 2 C ? ? ? 1_555 K DAL 3 N ? ? K DAL 2 K DAL 3 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale71 covale both ? L DLS 1 C ? ? ? 1_555 L DAL 2 N ? ? L DLS 1 L DAL 2 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale72 covale both ? L DAL 2 C ? ? ? 1_555 L DAL 3 N ? ? L DAL 2 L DAL 3 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale73 covale both ? M BGC . O2 ? ? ? 1_555 M RER . C1 ? ? M BGC 1 M RER 2 1_555 ? ? ? ? ? ? ? 1.419 ? ? covale74 covale both ? N BGC . O2 ? ? ? 1_555 N RER . C1 ? ? N BGC 1 N RER 2 1_555 ? ? ? ? ? ? ? 1.418 ? ? covale75 covale both ? O BGC . O2 ? ? ? 1_555 O RER . C1 ? ? O BGC 1 O RER 2 1_555 ? ? ? ? ? ? ? 1.418 ? ? covale76 covale both ? P BGC . O2 ? ? ? 1_555 P RER . C1 ? ? P BGC 1 P RER 2 1_555 ? ? ? ? ? ? ? 1.419 ? ? covale77 covale both ? Q BGC . O2 ? ? ? 1_555 Q RER . C1 ? ? Q BGC 1 Q RER 2 1_555 ? ? ? ? ? ? ? 1.422 ? ? covale78 covale both ? R BGC . O2 ? ? ? 1_555 R RER . C1 ? ? R BGC 1 R RER 2 1_555 ? ? ? ? ? ? ? 1.419 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GHP 5 A . ? GHP 5 A OMY 6 A ? OMY 6 A 1 1.25 2 GHP 5 B . ? GHP 5 B OMY 6 B ? OMY 6 B 1 1.30 3 GHP 5 C . ? GHP 5 C OMY 6 C ? OMY 6 C 1 1.08 4 GHP 5 D . ? GHP 5 D OMY 6 D ? OMY 6 D 1 1.10 5 GHP 5 E . ? GHP 5 E OMY 6 E ? OMY 6 E 1 0.01 6 GHP 5 F . ? GHP 5 F OMY 6 F ? OMY 6 F 1 1.33 # _database_PDB_matrix.entry_id 1FVM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1FVM _atom_sites.fract_transf_matrix[1][1] 0.028061 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027454 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015214 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MLU 1 1 1 MLU MLU A . n A 1 2 OMZ 2 2 2 OMZ OMZ A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 GHP 4 4 4 GHP GHP A . n A 1 5 GHP 5 5 5 GHP GHP A . n A 1 6 OMY 6 6 6 OMY OMY A . n A 1 7 3FG 7 7 7 3FG 3FG A . n B 1 1 MLU 1 1 1 MLU MLU B . n B 1 2 OMZ 2 2 2 OMZ OMZ B . n B 1 3 ASN 3 3 3 ASN ASN B . n B 1 4 GHP 4 4 4 GHP GHP B . n B 1 5 GHP 5 5 5 GHP GHP B . n B 1 6 OMY 6 6 6 OMY OMY B . n B 1 7 3FG 7 7 7 3FG 3FG B . n C 1 1 MLU 1 1 1 MLU MLU C . n C 1 2 OMZ 2 2 2 OMZ OMZ C . n C 1 3 ASN 3 3 3 ASN ASN C . n C 1 4 GHP 4 4 4 GHP GHP C . n C 1 5 GHP 5 5 5 GHP GHP C . n C 1 6 OMY 6 6 6 OMY OMY C . n C 1 7 3FG 7 7 7 3FG 3FG C . n D 1 1 MLU 1 1 1 MLU MLU D . n D 1 2 OMZ 2 2 2 OMZ OMZ D . n D 1 3 ASN 3 3 3 ASN ASN D . n D 1 4 GHP 4 4 4 GHP GHP D . n D 1 5 GHP 5 5 5 GHP GHP D . n D 1 6 OMY 6 6 6 OMY OMY D . n D 1 7 3FG 7 7 7 3FG 3FG D . n E 1 1 MLU 1 1 1 MLU MLU E . n E 1 2 OMZ 2 2 2 OMZ OMZ E . n E 1 3 ASN 3 3 3 ASN ASN E . n E 1 4 GHP 4 4 4 GHP GHP E . n E 1 5 GHP 5 5 5 GHP GHP E . n E 1 6 OMY 6 6 6 OMY OMY E . n E 1 7 3FG 7 7 7 3FG 3FG E . n F 1 1 MLU 1 1 1 MLU MLU F . n F 1 2 OMZ 2 2 2 OMZ OMZ F . n F 1 3 ASN 3 3 3 ASN ASN F . n F 1 4 GHP 4 4 4 GHP GHP F . n F 1 5 GHP 5 5 5 GHP GHP F . n F 1 6 OMY 6 6 6 OMY OMY F . n F 1 7 3FG 7 7 7 3FG 3FG F . n G 2 1 DLS 1 1 1 DLS DLS G . n G 2 2 DAL 2 2 2 DAL DAL G . n G 2 3 DAL 3 3 3 DAL DAL G . n H 2 1 DLS 1 1 1 DLS DLS H . n H 2 2 DAL 2 2 2 DAL DAL H . n H 2 3 DAL 3 3 3 DAL DAL H . n I 2 1 DLS 1 1 1 DLS DLS I . n I 2 2 DAL 2 2 2 DAL DAL I . n I 2 3 DAL 3 3 3 DAL DAL I . n J 2 1 DLS 1 1 1 DLS DLS J . n J 2 2 DAL 2 2 2 DAL DAL J . n J 2 3 DAL 3 3 3 DAL DAL J . n K 2 1 DLS 1 1 1 DLS DLS K . n K 2 2 DAL 2 2 2 DAL DAL K . n K 2 3 DAL 3 3 3 DAL DAL K . n L 2 1 DLS 1 1 1 DLS DLS L . n L 2 2 DAL 2 2 2 DAL DAL L . n L 2 3 DAL 3 3 3 DAL DAL L . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code S 4 HOH 1 2001 2001 HOH HOH A . S 4 HOH 2 2002 2002 HOH HOH A . S 4 HOH 3 2003 2003 HOH HOH A . S 4 HOH 4 2004 2004 HOH HOH A . S 4 HOH 5 2005 2005 HOH HOH A . S 4 HOH 6 2006 2006 HOH HOH A . S 4 HOH 7 2007 2007 HOH HOH A . S 4 HOH 8 2008 2008 HOH HOH A . S 4 HOH 9 2009 2009 HOH HOH A . S 4 HOH 10 2010 2010 HOH HOH A . S 4 HOH 11 2011 2011 HOH HOH A . S 4 HOH 12 2012 2012 HOH HOH A . S 4 HOH 13 2013 2013 HOH HOH A . S 4 HOH 14 2014 2014 HOH HOH A . S 4 HOH 15 2015 2015 HOH HOH A . S 4 HOH 16 2016 2016 HOH HOH A . S 4 HOH 17 2017 2017 HOH HOH A . S 4 HOH 18 2018 2018 HOH HOH A . S 4 HOH 19 2019 2019 HOH HOH A . S 4 HOH 20 2020 2020 HOH HOH A . T 4 HOH 1 2001 2001 HOH HOH B . T 4 HOH 2 2002 2002 HOH HOH B . T 4 HOH 3 2003 2003 HOH HOH B . T 4 HOH 4 2004 2004 HOH HOH B . T 4 HOH 5 2005 2005 HOH HOH B . T 4 HOH 6 2006 2006 HOH HOH B . T 4 HOH 7 2007 2007 HOH HOH B . T 4 HOH 8 2008 2008 HOH HOH B . T 4 HOH 9 2009 2009 HOH HOH B . T 4 HOH 10 2010 2010 HOH HOH B . T 4 HOH 11 2011 2011 HOH HOH B . T 4 HOH 12 2012 2012 HOH HOH B . T 4 HOH 13 2013 2013 HOH HOH B . T 4 HOH 14 2014 2014 HOH HOH B . T 4 HOH 15 2015 2015 HOH HOH B . U 4 HOH 1 2001 2001 HOH HOH C . U 4 HOH 2 2002 2002 HOH HOH C . U 4 HOH 3 2003 2003 HOH HOH C . U 4 HOH 4 2004 2004 HOH HOH C . U 4 HOH 5 2005 2005 HOH HOH C . U 4 HOH 6 2006 2006 HOH HOH C . U 4 HOH 7 2007 2007 HOH HOH C . U 4 HOH 8 2008 2008 HOH HOH C . U 4 HOH 9 2009 2009 HOH HOH C . U 4 HOH 10 2010 2010 HOH HOH C . U 4 HOH 11 2011 2011 HOH HOH C . U 4 HOH 12 2012 2012 HOH HOH C . U 4 HOH 13 2013 2013 HOH HOH C . U 4 HOH 14 2014 2014 HOH HOH C . V 4 HOH 1 2001 2001 HOH HOH D . V 4 HOH 2 2002 2002 HOH HOH D . V 4 HOH 3 2003 2003 HOH HOH D . V 4 HOH 4 2004 2004 HOH HOH D . V 4 HOH 5 2005 2005 HOH HOH D . V 4 HOH 6 2006 2006 HOH HOH D . V 4 HOH 7 2007 2007 HOH HOH D . V 4 HOH 8 2008 2008 HOH HOH D . V 4 HOH 9 2009 2009 HOH HOH D . V 4 HOH 10 2010 2010 HOH HOH D . V 4 HOH 11 2011 2011 HOH HOH D . V 4 HOH 12 2012 2012 HOH HOH D . V 4 HOH 13 2013 2013 HOH HOH D . W 4 HOH 1 2001 2001 HOH HOH E . W 4 HOH 2 2002 2002 HOH HOH E . W 4 HOH 3 2003 2003 HOH HOH E . W 4 HOH 4 2004 2004 HOH HOH E . W 4 HOH 5 2005 2005 HOH HOH E . W 4 HOH 6 2006 2006 HOH HOH E . W 4 HOH 7 2007 2007 HOH HOH E . W 4 HOH 8 2008 2008 HOH HOH E . W 4 HOH 9 2009 2009 HOH HOH E . W 4 HOH 10 2010 2010 HOH HOH E . W 4 HOH 11 2011 2011 HOH HOH E . W 4 HOH 12 2012 2012 HOH HOH E . W 4 HOH 13 2013 2013 HOH HOH E . W 4 HOH 14 2014 2014 HOH HOH E . W 4 HOH 15 2015 2015 HOH HOH E . W 4 HOH 16 2016 2016 HOH HOH E . W 4 HOH 17 2017 2017 HOH HOH E . W 4 HOH 18 2018 2018 HOH HOH E . W 4 HOH 19 2019 2019 HOH HOH E . W 4 HOH 20 2020 2020 HOH HOH E . W 4 HOH 21 2021 2021 HOH HOH E . X 4 HOH 1 2001 2001 HOH HOH F . X 4 HOH 2 2002 2002 HOH HOH F . X 4 HOH 3 2003 2003 HOH HOH F . X 4 HOH 4 2004 2004 HOH HOH F . X 4 HOH 5 2005 2005 HOH HOH F . X 4 HOH 6 2006 2006 HOH HOH F . X 4 HOH 7 2007 2007 HOH HOH F . X 4 HOH 8 2008 2008 HOH HOH F . X 4 HOH 9 2009 2009 HOH HOH F . X 4 HOH 10 2010 2010 HOH HOH F . X 4 HOH 11 2011 2011 HOH HOH F . X 4 HOH 12 2012 2012 HOH HOH F . X 4 HOH 13 2013 2013 HOH HOH F . X 4 HOH 14 2014 2014 HOH HOH F . Y 4 HOH 1 2001 2001 HOH HOH G . Y 4 HOH 2 2002 2002 HOH HOH G . Y 4 HOH 3 2003 2003 HOH HOH G . Z 4 HOH 1 2001 2001 HOH HOH H . Z 4 HOH 2 2002 2002 HOH HOH H . AA 4 HOH 1 2001 2001 HOH HOH I . BA 4 HOH 1 2001 2001 HOH HOH J . BA 4 HOH 2 2002 2002 HOH HOH J . CA 4 HOH 1 2001 2001 HOH HOH K . CA 4 HOH 2 2002 2002 HOH HOH K . CA 4 HOH 3 2003 2003 HOH HOH K . CA 4 HOH 4 2004 2004 HOH HOH K . CA 4 HOH 5 2005 2005 HOH HOH K . DA 4 HOH 1 2001 2001 HOH HOH L . DA 4 HOH 2 2002 2002 HOH HOH L . # _pdbx_molecule_features.prd_id PRD_000204 _pdbx_molecule_features.name VANCOMYCIN _pdbx_molecule_features.type Glycopeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;VANCOMYCIN IS A TRICYCLIC GLYCOPEPTIDE, GLYCOSYLATED BY A DISACCHARIDE (RESIDUES 8 AND 9) ON RESIDUE 4. ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000204 A 1 PRD_000204 M 2 PRD_000204 B 2 PRD_000204 N 3 PRD_000204 C 3 PRD_000204 O 4 PRD_000204 D 4 PRD_000204 P 5 PRD_000204 E 5 PRD_000204 Q 6 PRD_000204 F 6 PRD_000204 R # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly 'PISA 1.18' dimeric 2 2 software_defined_assembly 'PISA 1.18' dimeric 2 3 software_defined_assembly 'PISA 1.18' dimeric 2 4 software_defined_assembly 'PISA 1.18' dimeric 2 5 software_defined_assembly 'PISA 1.18' dimeric 2 6 software_defined_assembly 'PISA 1.18' dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,G,M,S,Y 2 1 B,H,N,T,Z 3 1 C,I,O,U,AA 4 1 D,J,P,V,BA 5 1 E,K,Q,W,CA 6 1 F,L,R,X,DA # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 910 ? 1 MORE -2.9 ? 1 'SSA (A^2)' 1540 ? 2 'ABSA (A^2)' 960 ? 2 MORE -3.6 ? 2 'SSA (A^2)' 1480 ? 3 'ABSA (A^2)' 940 ? 3 MORE -2.6 ? 3 'SSA (A^2)' 1540 ? 4 'ABSA (A^2)' 800 ? 4 MORE -2.7 ? 4 'SSA (A^2)' 1630 ? 5 'ABSA (A^2)' 970 ? 5 MORE -3.2 ? 5 'SSA (A^2)' 1430 ? 6 'ABSA (A^2)' 820 ? 6 MORE -2.7 ? 6 'SSA (A^2)' 1640 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-11-01 2 'Structure model' 1 1 2011-06-14 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 5 'Structure model' 1 4 2012-12-12 6 'Structure model' 2 0 2020-07-29 7 'Structure model' 2 1 2023-10-25 8 'Structure model' 2 2 2023-11-15 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 6 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' Other 9 6 'Structure model' 'Atomic model' 10 6 'Structure model' 'Data collection' 11 6 'Structure model' 'Derived calculations' 12 6 'Structure model' 'Polymer sequence' 13 6 'Structure model' 'Structure summary' 14 7 'Structure model' 'Data collection' 15 7 'Structure model' 'Database references' 16 7 'Structure model' 'Refinement description' 17 7 'Structure model' 'Structure summary' 18 8 'Structure model' 'Data collection' 19 8 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' atom_site 2 6 'Structure model' chem_comp 3 6 'Structure model' entity 4 6 'Structure model' entity_poly 5 6 'Structure model' pdbx_branch_scheme 6 6 'Structure model' pdbx_chem_comp_identifier 7 6 'Structure model' pdbx_entity_branch 8 6 'Structure model' pdbx_entity_branch_descriptor 9 6 'Structure model' pdbx_entity_branch_link 10 6 'Structure model' pdbx_entity_branch_list 11 6 'Structure model' pdbx_entity_nonpoly 12 6 'Structure model' pdbx_molecule 13 6 'Structure model' pdbx_nonpoly_scheme 14 6 'Structure model' pdbx_struct_assembly_gen 15 6 'Structure model' struct_asym 16 6 'Structure model' struct_conn 17 6 'Structure model' struct_site 18 6 'Structure model' struct_site_gen 19 7 'Structure model' chem_comp 20 7 'Structure model' chem_comp_atom 21 7 'Structure model' chem_comp_bond 22 7 'Structure model' database_2 23 7 'Structure model' pdbx_initial_refinement_model 24 8 'Structure model' chem_comp_atom 25 8 'Structure model' chem_comp_bond 26 8 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_atom_site.auth_asym_id' 2 6 'Structure model' '_atom_site.auth_seq_id' 3 6 'Structure model' '_atom_site.label_asym_id' 4 6 'Structure model' '_atom_site.label_entity_id' 5 6 'Structure model' '_chem_comp.name' 6 6 'Structure model' '_chem_comp.type' 7 6 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 8 6 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 9 6 'Structure model' '_struct_conn.pdbx_dist_value' 10 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 11 6 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 12 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 13 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 15 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 16 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 17 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 18 6 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 19 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 20 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 21 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 22 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 23 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 24 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' 25 7 'Structure model' '_chem_comp.pdbx_synonyms' 26 7 'Structure model' '_database_2.pdbx_DOI' 27 7 'Structure model' '_database_2.pdbx_database_accession' 28 8 'Structure model' '_chem_comp_atom.atom_id' 29 8 'Structure model' '_chem_comp_bond.atom_id_2' 30 8 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 X-PLOR refinement 3.851 ? 2 MOSFLM 'data reduction' . ? 3 CCP4 'data scaling' '(SCALA)' ? 4 # _pdbx_entry_details.entry_id 1FVM _pdbx_entry_details.compound_details ;VANCOMYCIN IS A TRICYCLIC GLYCOPEPTIDE. THE SCAFFOLD IS A HEPTAPEPTIDE WITH THE CONFIGURATION D-D-L-D-D-L-L. IT IS FURTHER GLYCOSYLATED BY A DISACCHARIDE MADE OF D-GLUCOSE AND VANCOSAMINE. HERE, VANCOMYCIN IS REPRESENTED BY GROUPING TOUGHER THE SEQUENCE (SEQRES) AND THE TWO LIGANDS (HET) BGC AND RER. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN B 3 ? ? -126.84 -58.41 2 1 ASN D 3 ? ? -102.93 -62.46 3 1 ASN E 3 ? ? -114.68 -71.29 4 1 ASN F 3 ? ? -105.07 -68.28 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3FG N N N N 1 3FG OD1 O N N 2 3FG CD1 C Y N 3 3FG CG1 C Y N 4 3FG CZ C Y N 5 3FG CD2 C Y N 6 3FG OD2 O N N 7 3FG CG2 C Y N 8 3FG CB C Y N 9 3FG CA C N S 10 3FG C C N N 11 3FG O O N N 12 3FG OXT O N N 13 3FG H H N N 14 3FG H2 H N N 15 3FG HA H N N 16 3FG HD1 H N N 17 3FG HG1 H N N 18 3FG HZ H N N 19 3FG HD2 H N N 20 3FG HG2 H N N 21 3FG HXT H N N 22 ASN N N N N 23 ASN CA C N S 24 ASN C C N N 25 ASN O O N N 26 ASN CB C N N 27 ASN CG C N N 28 ASN OD1 O N N 29 ASN ND2 N N N 30 ASN OXT O N N 31 ASN H H N N 32 ASN H2 H N N 33 ASN HA H N N 34 ASN HB2 H N N 35 ASN HB3 H N N 36 ASN HD21 H N N 37 ASN HD22 H N N 38 ASN HXT H N N 39 BGC C2 C N R 40 BGC C3 C N S 41 BGC C4 C N S 42 BGC C5 C N R 43 BGC C6 C N N 44 BGC C1 C N R 45 BGC O1 O N N 46 BGC O2 O N N 47 BGC O3 O N N 48 BGC O4 O N N 49 BGC O5 O N N 50 BGC O6 O N N 51 BGC H2 H N N 52 BGC H3 H N N 53 BGC H4 H N N 54 BGC H5 H N N 55 BGC H61 H N N 56 BGC H62 H N N 57 BGC H1 H N N 58 BGC HO1 H N N 59 BGC HO2 H N N 60 BGC HO3 H N N 61 BGC HO4 H N N 62 BGC HO6 H N N 63 DAL N N N N 64 DAL CA C N R 65 DAL CB C N N 66 DAL C C N N 67 DAL O O N N 68 DAL OXT O N N 69 DAL H H N N 70 DAL H2 H N N 71 DAL HA H N N 72 DAL HB1 H N N 73 DAL HB2 H N N 74 DAL HB3 H N N 75 DAL HXT H N N 76 DLS C2 C N N 77 DLS O1 O N N 78 DLS C1 C N N 79 DLS N N N N 80 DLS CA C N S 81 DLS C C N N 82 DLS O O N N 83 DLS CB C N N 84 DLS CG C N N 85 DLS CD C N N 86 DLS CE C N N 87 DLS NZ N N N 88 DLS CH3 C N N 89 DLS OH O N N 90 DLS CH C N N 91 DLS OXT O N N 92 DLS H21 H N N 93 DLS H22 H N N 94 DLS H23 H N N 95 DLS H H N N 96 DLS HCA H N N 97 DLS HB2 H N N 98 DLS HB3 H N N 99 DLS HG2 H N N 100 DLS HG3 H N N 101 DLS HD2 H N N 102 DLS HD3 H N N 103 DLS HE2 H N N 104 DLS HE3 H N N 105 DLS HZ H N N 106 DLS HH31 H N N 107 DLS HH32 H N N 108 DLS HH33 H N N 109 DLS HXT H N N 110 GHP N N N N 111 GHP CA C N R 112 GHP C C N N 113 GHP O O N N 114 GHP OXT O N N 115 GHP C1 C Y N 116 GHP C2 C Y N 117 GHP C3 C Y N 118 GHP C4 C Y N 119 GHP O4 O N N 120 GHP C5 C Y N 121 GHP C6 C Y N 122 GHP H H N N 123 GHP H2 H N N 124 GHP HA H N N 125 GHP HXT H N N 126 GHP HC2 H N N 127 GHP H3 H N N 128 GHP HO4 H N N 129 GHP H5 H N N 130 GHP H6 H N N 131 HOH O O N N 132 HOH H1 H N N 133 HOH H2 H N N 134 MLU N N N N 135 MLU CN C N N 136 MLU CA C N R 137 MLU C C N N 138 MLU O O N N 139 MLU CB C N N 140 MLU CG C N N 141 MLU CD1 C N N 142 MLU CD2 C N N 143 MLU OXT O N N 144 MLU H H N N 145 MLU HCN1 H N N 146 MLU HCN2 H N N 147 MLU HCN3 H N N 148 MLU HA H N N 149 MLU HB2 H N N 150 MLU HB3 H N N 151 MLU HXT H N N 152 MLU HG H N N 153 MLU HD11 H N N 154 MLU HD12 H N N 155 MLU HD13 H N N 156 MLU HD21 H N N 157 MLU HD22 H N N 158 MLU HD23 H N N 159 OMY N N N N 160 OMY CA C N S 161 OMY OCZ O N N 162 OMY CE2 C Y N 163 OMY CE1 C Y N 164 OMY CZ C Y N 165 OMY CG C Y N 166 OMY CD2 C Y N 167 OMY CD1 C Y N 168 OMY CB C N R 169 OMY CL CL N N 170 OMY O O N N 171 OMY C C N N 172 OMY ODE O N N 173 OMY OXT O N N 174 OMY H H N N 175 OMY H2 H N N 176 OMY HA H N N 177 OMY HCZ H N N 178 OMY HE2 H N N 179 OMY HD2 H N N 180 OMY HD1 H N N 181 OMY HB H N N 182 OMY HXT H N N 183 OMY HDE H N N 184 OMZ N N N N 185 OMZ CA C N R 186 OMZ C C N N 187 OMZ O O N N 188 OMZ OXT O N N 189 OMZ CB C N R 190 OMZ OC O N N 191 OMZ CG C Y N 192 OMZ CD1 C Y N 193 OMZ CD2 C Y N 194 OMZ CE1 C Y N 195 OMZ CL CL N N 196 OMZ CE2 C Y N 197 OMZ CZ C Y N 198 OMZ OH O N N 199 OMZ H H N N 200 OMZ H2 H N N 201 OMZ HA H N N 202 OMZ HB H N N 203 OMZ HXT H N N 204 OMZ HC H N N 205 OMZ HD1 H N N 206 OMZ HD2 H N N 207 OMZ HE2 H N N 208 OMZ HH H N N 209 RER C1 C N R 210 RER C2 C N N 211 RER C3 C N S 212 RER N3 N N N 213 RER C3A C N N 214 RER C4 C N S 215 RER O4 O N N 216 RER C5 C N S 217 RER O5 O N N 218 RER C5A C N N 219 RER O1 O N N 220 RER H1 H N N 221 RER H21C H N N 222 RER H22C H N N 223 RER HO1 H N N 224 RER H31N H N N 225 RER H32N H N N 226 RER H3A1 H N N 227 RER H3A2 H N N 228 RER H3A3 H N N 229 RER H4 H N N 230 RER HO4 H N N 231 RER H5 H N N 232 RER H5A1 H N N 233 RER H5A2 H N N 234 RER H5A3 H N N 235 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3FG N CA sing N N 1 3FG OD1 CD1 sing N N 2 3FG CD1 CG1 sing Y N 3 3FG CD1 CZ doub Y N 4 3FG CG1 CB doub Y N 5 3FG CZ CD2 sing Y N 6 3FG CD2 OD2 sing N N 7 3FG CD2 CG2 doub Y N 8 3FG CG2 CB sing Y N 9 3FG CB CA sing N N 10 3FG CA C sing N N 11 3FG C O doub N N 12 3FG C OXT sing N N 13 3FG N H sing N N 14 3FG N H2 sing N N 15 3FG CA HA sing N N 16 3FG OD1 HD1 sing N N 17 3FG CG1 HG1 sing N N 18 3FG CZ HZ sing N N 19 3FG OD2 HD2 sing N N 20 3FG CG2 HG2 sing N N 21 3FG OXT HXT sing N N 22 ASN N CA sing N N 23 ASN N H sing N N 24 ASN N H2 sing N N 25 ASN CA C sing N N 26 ASN CA CB sing N N 27 ASN CA HA sing N N 28 ASN C O doub N N 29 ASN C OXT sing N N 30 ASN CB CG sing N N 31 ASN CB HB2 sing N N 32 ASN CB HB3 sing N N 33 ASN CG OD1 doub N N 34 ASN CG ND2 sing N N 35 ASN ND2 HD21 sing N N 36 ASN ND2 HD22 sing N N 37 ASN OXT HXT sing N N 38 BGC C2 C3 sing N N 39 BGC C2 C1 sing N N 40 BGC C2 O2 sing N N 41 BGC C2 H2 sing N N 42 BGC C3 C4 sing N N 43 BGC C3 O3 sing N N 44 BGC C3 H3 sing N N 45 BGC C4 C5 sing N N 46 BGC C4 O4 sing N N 47 BGC C4 H4 sing N N 48 BGC C5 C6 sing N N 49 BGC C5 O5 sing N N 50 BGC C5 H5 sing N N 51 BGC C6 O6 sing N N 52 BGC C6 H61 sing N N 53 BGC C6 H62 sing N N 54 BGC C1 O1 sing N N 55 BGC C1 O5 sing N N 56 BGC C1 H1 sing N N 57 BGC O1 HO1 sing N N 58 BGC O2 HO2 sing N N 59 BGC O3 HO3 sing N N 60 BGC O4 HO4 sing N N 61 BGC O6 HO6 sing N N 62 DAL N CA sing N N 63 DAL N H sing N N 64 DAL N H2 sing N N 65 DAL CA CB sing N N 66 DAL CA C sing N N 67 DAL CA HA sing N N 68 DAL CB HB1 sing N N 69 DAL CB HB2 sing N N 70 DAL CB HB3 sing N N 71 DAL C O doub N N 72 DAL C OXT sing N N 73 DAL OXT HXT sing N N 74 DLS C2 C1 sing N N 75 DLS C2 H21 sing N N 76 DLS C2 H22 sing N N 77 DLS C2 H23 sing N N 78 DLS O1 C1 doub N N 79 DLS C1 N sing N N 80 DLS N CA sing N N 81 DLS N H sing N N 82 DLS CA C sing N N 83 DLS CA CB sing N N 84 DLS CA HCA sing N N 85 DLS C O doub N N 86 DLS C OXT sing N N 87 DLS CB CG sing N N 88 DLS CB HB2 sing N N 89 DLS CB HB3 sing N N 90 DLS CG CD sing N N 91 DLS CG HG2 sing N N 92 DLS CG HG3 sing N N 93 DLS CD CE sing N N 94 DLS CD HD2 sing N N 95 DLS CD HD3 sing N N 96 DLS CE NZ sing N N 97 DLS CE HE2 sing N N 98 DLS CE HE3 sing N N 99 DLS NZ CH sing N N 100 DLS NZ HZ sing N N 101 DLS CH3 CH sing N N 102 DLS CH3 HH31 sing N N 103 DLS CH3 HH32 sing N N 104 DLS CH3 HH33 sing N N 105 DLS OH CH doub N N 106 DLS OXT HXT sing N N 107 GHP N CA sing N N 108 GHP N H sing N N 109 GHP N H2 sing N N 110 GHP CA C sing N N 111 GHP CA C1 sing N N 112 GHP CA HA sing N N 113 GHP C O doub N N 114 GHP C OXT sing N N 115 GHP OXT HXT sing N N 116 GHP C1 C2 doub Y N 117 GHP C1 C6 sing Y N 118 GHP C2 C3 sing Y N 119 GHP C2 HC2 sing N N 120 GHP C3 C4 doub Y N 121 GHP C3 H3 sing N N 122 GHP C4 O4 sing N N 123 GHP C4 C5 sing Y N 124 GHP O4 HO4 sing N N 125 GHP C5 C6 doub Y N 126 GHP C5 H5 sing N N 127 GHP C6 H6 sing N N 128 HOH O H1 sing N N 129 HOH O H2 sing N N 130 MLU N CN sing N N 131 MLU N CA sing N N 132 MLU CA C sing N N 133 MLU CA CB sing N N 134 MLU C O doub N N 135 MLU C OXT sing N N 136 MLU CB CG sing N N 137 MLU CG CD1 sing N N 138 MLU CG CD2 sing N N 139 MLU N H sing N N 140 MLU CN HCN1 sing N N 141 MLU CN HCN2 sing N N 142 MLU CN HCN3 sing N N 143 MLU CA HA sing N N 144 MLU CB HB2 sing N N 145 MLU CB HB3 sing N N 146 MLU OXT HXT sing N N 147 MLU CG HG sing N N 148 MLU CD1 HD11 sing N N 149 MLU CD1 HD12 sing N N 150 MLU CD1 HD13 sing N N 151 MLU CD2 HD21 sing N N 152 MLU CD2 HD22 sing N N 153 MLU CD2 HD23 sing N N 154 OMY N CA sing N N 155 OMY OCZ CZ sing N N 156 OMY CZ CE2 sing Y N 157 OMY CZ CE1 doub Y N 158 OMY CE2 CD2 doub Y N 159 OMY CD2 CG sing Y N 160 OMY CG CD1 doub Y N 161 OMY CG CB sing N N 162 OMY CD1 CE1 sing Y N 163 OMY CE1 CL sing N N 164 OMY C O doub N N 165 OMY C CA sing N N 166 OMY C OXT sing N N 167 OMY CA CB sing N N 168 OMY CB ODE sing N N 169 OMY N H sing N N 170 OMY N H2 sing N N 171 OMY CA HA sing N N 172 OMY OCZ HCZ sing N N 173 OMY CE2 HE2 sing N N 174 OMY CD2 HD2 sing N N 175 OMY CD1 HD1 sing N N 176 OMY CB HB sing N N 177 OMY OXT HXT sing N N 178 OMY ODE HDE sing N N 179 OMZ N CA sing N N 180 OMZ CA C sing N N 181 OMZ CA CB sing N N 182 OMZ C O doub N N 183 OMZ C OXT sing N N 184 OMZ CL CE1 sing N N 185 OMZ CB OC sing N N 186 OMZ CB CG sing N N 187 OMZ CG CD1 doub Y N 188 OMZ CG CD2 sing Y N 189 OMZ CD1 CE1 sing Y N 190 OMZ CD2 CE2 doub Y N 191 OMZ CE1 CZ doub Y N 192 OMZ CE2 CZ sing Y N 193 OMZ CZ OH sing N N 194 OMZ N H sing N N 195 OMZ N H2 sing N N 196 OMZ CA HA sing N N 197 OMZ CB HB sing N N 198 OMZ OXT HXT sing N N 199 OMZ OC HC sing N N 200 OMZ CD1 HD1 sing N N 201 OMZ CD2 HD2 sing N N 202 OMZ CE2 HE2 sing N N 203 OMZ OH HH sing N N 204 RER C1 C2 sing N N 205 RER C1 O5 sing N N 206 RER C1 O1 sing N N 207 RER C2 C3 sing N N 208 RER C3 N3 sing N N 209 RER C3 C3A sing N N 210 RER C3 C4 sing N N 211 RER C4 O4 sing N N 212 RER C4 C5 sing N N 213 RER C5 O5 sing N N 214 RER C5 C5A sing N N 215 RER C1 H1 sing N N 216 RER C2 H21C sing N N 217 RER C2 H22C sing N N 218 RER O1 HO1 sing N N 219 RER N3 H31N sing N N 220 RER N3 H32N sing N N 221 RER C3A H3A1 sing N N 222 RER C3A H3A2 sing N N 223 RER C3A H3A3 sing N N 224 RER C4 H4 sing N N 225 RER O4 HO4 sing N N 226 RER C5 H5 sing N N 227 RER C5A H5A1 sing N N 228 RER C5A H5A2 sing N N 229 RER C5A H5A3 sing N N 230 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero M 3 BGC 1 M BGC 1 A BGC 8 n M 3 RER 2 M RER 2 A RER 9 n N 3 BGC 1 N BGC 1 B BGC 8 n N 3 RER 2 N RER 2 B RER 9 n O 3 BGC 1 O BGC 1 C BGC 8 n O 3 RER 2 O RER 2 C RER 9 n P 3 BGC 1 P BGC 1 D BGC 8 n P 3 RER 2 P RER 2 D RER 9 n Q 3 BGC 1 Q BGC 1 E BGC 8 n Q 3 RER 2 Q RER 2 E RER 9 n R 3 BGC 1 R BGC 1 F BGC 8 n R 3 RER 2 R RER 2 F RER 9 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 3 'WURCS=2.0/2,2,1/[a2122h-1b_1-5][ad621m-1a_1-5_3*C_3*N]/1-2/a2-b1' WURCS PDB2Glycan 1.1.0 2 3 '[][D-1-deoxy-Glcp]{[(2+1)][a-L-2-deoxy-Fucp3N]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 RER _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 3 BGC 1 n 3 RER 2 n # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1AA5 _pdbx_initial_refinement_model.details 'PDB ENTRY 1AA5' #