HEADER TRANSPORT PROTEIN 25-SEP-00 1FX3 TITLE CRYSTAL STRUCTURE OF H. INFLUENZAE SECB COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN-EXPORT PROTEIN SECB; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: SECB; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 727; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN TRASNPORT, TRANSLOCATION, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.XU,J.D.KNAFELS,K.YOSHINO REVDAT 3 07-FEB-24 1FX3 1 REMARK REVDAT 2 24-FEB-09 1FX3 1 VERSN REVDAT 1 06-DEC-00 1FX3 0 JRNL AUTH Z.XU,J.D.KNAFELS,K.YOSHINO JRNL TITL CRYSTAL STRUCTURE OF THE BACTERIAL PROTEIN EXPORT CHAPERONE JRNL TITL 2 SECB. JRNL REF NAT.STRUCT.BIOL. V. 7 1172 2000 JRNL REFN ISSN 1072-8368 JRNL PMID 11101901 JRNL DOI 10.1038/82040 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 622143.800 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 40192 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4048 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5511 REMARK 3 BIN R VALUE (WORKING SET) : 0.3490 REMARK 3 BIN FREE R VALUE : 0.4100 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 607 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4422 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 63 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.21000 REMARK 3 B22 (A**2) : -2.21000 REMARK 3 B33 (A**2) : 4.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM SIGMAA (A) : 0.46 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.50 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.64 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.100 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 6.090 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 8.410 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 8.730 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 10.800; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 53.21 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FX3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-00. REMARK 100 THE DEPOSITION ID IS D_1000011975. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OTHER REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42096 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.29200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, ETHANOL, PIPES, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.16650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 63.17200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.17200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 111.24975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.17200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 63.17200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.08325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.17200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.17200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 111.24975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 63.17200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.17200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.08325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.16650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER CONTAINED IN THE REMARK 300 ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 4 REMARK 465 LYS A 5 REMARK 465 GLN A 6 REMARK 465 ASP A 7 REMARK 465 VAL A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 THR A 11 REMARK 465 GLU A 12 REMARK 465 GLU A 13 REMARK 465 GLN A 14 REMARK 465 ALA A 158 REMARK 465 GLU A 159 REMARK 465 GLU A 160 REMARK 465 LYS A 161 REMARK 465 SER A 162 REMARK 465 GLU A 163 REMARK 465 GLU A 164 REMARK 465 GLU A 165 REMARK 465 GLN A 166 REMARK 465 THR A 167 REMARK 465 LYS A 168 REMARK 465 HIS A 169 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 GLN B 4 REMARK 465 LYS B 5 REMARK 465 GLN B 6 REMARK 465 ASP B 7 REMARK 465 VAL B 8 REMARK 465 ALA B 9 REMARK 465 ALA B 10 REMARK 465 THR B 11 REMARK 465 GLU B 12 REMARK 465 GLU B 13 REMARK 465 GLN B 14 REMARK 465 GLU B 164 REMARK 465 GLU B 165 REMARK 465 GLN B 166 REMARK 465 THR B 167 REMARK 465 LYS B 168 REMARK 465 HIS B 169 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 GLU C 3 REMARK 465 GLN C 4 REMARK 465 LYS C 5 REMARK 465 GLN C 6 REMARK 465 ASP C 7 REMARK 465 VAL C 8 REMARK 465 ALA C 9 REMARK 465 ALA C 10 REMARK 465 THR C 11 REMARK 465 GLU C 12 REMARK 465 GLU C 13 REMARK 465 GLN C 14 REMARK 465 ASN C 157 REMARK 465 ALA C 158 REMARK 465 GLU C 159 REMARK 465 GLU C 160 REMARK 465 LYS C 161 REMARK 465 SER C 162 REMARK 465 GLU C 163 REMARK 465 GLU C 164 REMARK 465 GLU C 165 REMARK 465 GLN C 166 REMARK 465 THR C 167 REMARK 465 LYS C 168 REMARK 465 HIS C 169 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 GLU D 3 REMARK 465 GLN D 4 REMARK 465 LYS D 5 REMARK 465 GLN D 6 REMARK 465 ASP D 7 REMARK 465 VAL D 8 REMARK 465 ALA D 9 REMARK 465 ALA D 10 REMARK 465 THR D 11 REMARK 465 GLU D 12 REMARK 465 GLU D 13 REMARK 465 GLN D 14 REMARK 465 GLN D 15 REMARK 465 PRO D 16 REMARK 465 ARG D 152 REMARK 465 GLN D 153 REMARK 465 GLN D 154 REMARK 465 ALA D 155 REMARK 465 GLU D 156 REMARK 465 ASN D 157 REMARK 465 ALA D 158 REMARK 465 GLU D 159 REMARK 465 GLU D 160 REMARK 465 LYS D 161 REMARK 465 SER D 162 REMARK 465 GLU D 163 REMARK 465 GLU D 164 REMARK 465 GLU D 165 REMARK 465 GLN D 166 REMARK 465 THR D 167 REMARK 465 LYS D 168 REMARK 465 HIS D 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 15 CG CD OE1 NE2 REMARK 470 GLN A 40 CG CD OE1 NE2 REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 LYS A 44 CG CD CE NZ REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 LEU A 75 CG CD1 CD2 REMARK 470 ARG A 152 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 154 CG CD OE1 NE2 REMARK 470 ASN A 157 CG OD1 ND2 REMARK 470 GLN B 15 CG CD OE1 NE2 REMARK 470 ASP B 50 CG OD1 OD2 REMARK 470 GLN C 15 CG CD OE1 NE2 REMARK 470 GLN C 154 CG CD OE1 NE2 REMARK 470 GLU C 156 CG CD OE1 OE2 REMARK 470 GLN D 19 CG CD OE1 NE2 REMARK 470 GLN D 21 CG CD OE1 NE2 REMARK 470 LYS D 44 CG CD CE NZ REMARK 470 LYS D 46 CG CD CE NZ REMARK 470 GLU D 76 CG CD OE1 OE2 REMARK 470 GLU D 99 CG CD OE1 OE2 REMARK 470 TYR D 149 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 26 OE2 GLU B 64 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 33 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 PRO A 45 C - N - CA ANGL. DEV. = 11.2 DEGREES REMARK 500 PRO B 33 C - N - CA ANGL. DEV. = 10.2 DEGREES REMARK 500 PRO C 33 C - N - CA ANGL. DEV. = 12.2 DEGREES REMARK 500 PRO D 45 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 30 81.75 -169.07 REMARK 500 ALA A 32 66.70 -159.74 REMARK 500 PRO A 33 -92.78 -39.54 REMARK 500 ASN A 34 40.20 -54.04 REMARK 500 LEU A 35 -85.56 -60.49 REMARK 500 PRO A 36 -45.60 -22.82 REMARK 500 ILE A 38 -28.04 -29.65 REMARK 500 GLN A 41 163.35 -46.51 REMARK 500 LYS A 46 60.52 -161.95 REMARK 500 ASP A 50 152.41 177.92 REMARK 500 GLU A 72 78.52 -161.50 REMARK 500 LEU A 75 86.62 39.41 REMARK 500 GLU A 76 -83.14 -18.32 REMARK 500 PHE A 83 155.34 171.11 REMARK 500 SER A 109 -46.47 -134.64 REMARK 500 LEU A 126 -74.77 -53.82 REMARK 500 THR A 131 6.78 55.59 REMARK 500 ALA A 134 125.29 -26.72 REMARK 500 LEU A 137 131.91 -21.65 REMARK 500 PRO A 139 164.02 -45.07 REMARK 500 ARG B 22 112.15 -166.78 REMARK 500 ASP B 27 131.68 -174.58 REMARK 500 PRO B 33 -7.72 -56.50 REMARK 500 HIS B 37 -38.20 -37.75 REMARK 500 TRP B 43 81.65 -68.62 REMARK 500 LYS B 44 77.14 -113.36 REMARK 500 PHE B 49 87.07 -155.20 REMARK 500 ASP B 77 -80.65 -48.40 REMARK 500 SER B 109 -71.11 -133.48 REMARK 500 ALA B 134 147.79 -34.83 REMARK 500 ASN B 151 -18.25 -41.30 REMARK 500 ARG C 22 102.55 -176.63 REMARK 500 ASP C 27 149.72 -171.47 REMARK 500 ASP C 61 34.04 90.02 REMARK 500 SER C 109 -71.94 -131.10 REMARK 500 PHE D 30 90.72 -163.50 REMARK 500 PRO D 33 21.40 -71.37 REMARK 500 ILE D 38 -37.88 -168.34 REMARK 500 PHE D 39 -14.47 -45.51 REMARK 500 ASP D 50 149.45 -173.04 REMARK 500 ASP D 60 99.77 -62.76 REMARK 500 ASP D 77 -50.22 101.39 REMARK 500 PHE D 83 158.86 175.96 REMARK 500 ASP D 100 -76.03 -19.70 REMARK 500 SER D 109 -57.28 -122.35 REMARK 500 THR D 131 -9.38 64.87 REMARK 500 PHE D 132 176.82 -56.03 REMARK 500 ALA D 134 120.87 -35.76 REMARK 500 LEU D 137 146.99 -39.20 REMARK 500 GLU D 148 2.45 -59.82 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1FX3 A 1 169 UNP P44853 SECB_HAEIN 1 169 DBREF 1FX3 B 1 169 UNP P44853 SECB_HAEIN 1 169 DBREF 1FX3 C 1 169 UNP P44853 SECB_HAEIN 1 169 DBREF 1FX3 D 1 169 UNP P44853 SECB_HAEIN 1 169 SEQRES 1 A 169 MET SER GLU GLN LYS GLN ASP VAL ALA ALA THR GLU GLU SEQRES 2 A 169 GLN GLN PRO VAL LEU GLN ILE GLN ARG ILE TYR VAL LYS SEQRES 3 A 169 ASP VAL SER PHE GLU ALA PRO ASN LEU PRO HIS ILE PHE SEQRES 4 A 169 GLN GLN GLU TRP LYS PRO LYS LEU GLY PHE ASP LEU SER SEQRES 5 A 169 THR GLU THR THR GLN VAL GLY ASP ASP LEU TYR GLU VAL SEQRES 6 A 169 VAL LEU ASN ILE SER VAL GLU THR THR LEU GLU ASP SER SEQRES 7 A 169 GLY ASP VAL ALA PHE ILE CYS GLU VAL LYS GLN ALA GLY SEQRES 8 A 169 VAL PHE THR ILE SER GLY LEU GLU ASP VAL GLN MET ALA SEQRES 9 A 169 HIS CYS LEU THR SER GLN CYS PRO ASN MET LEU PHE PRO SEQRES 10 A 169 TYR ALA ARG GLU LEU VAL SER ASN LEU VAL ASN ARG GLY SEQRES 11 A 169 THR PHE PRO ALA LEU ASN LEU SER PRO VAL ASN PHE ASP SEQRES 12 A 169 ALA LEU PHE VAL GLU TYR MET ASN ARG GLN GLN ALA GLU SEQRES 13 A 169 ASN ALA GLU GLU LYS SER GLU GLU GLU GLN THR LYS HIS SEQRES 1 B 169 MET SER GLU GLN LYS GLN ASP VAL ALA ALA THR GLU GLU SEQRES 2 B 169 GLN GLN PRO VAL LEU GLN ILE GLN ARG ILE TYR VAL LYS SEQRES 3 B 169 ASP VAL SER PHE GLU ALA PRO ASN LEU PRO HIS ILE PHE SEQRES 4 B 169 GLN GLN GLU TRP LYS PRO LYS LEU GLY PHE ASP LEU SER SEQRES 5 B 169 THR GLU THR THR GLN VAL GLY ASP ASP LEU TYR GLU VAL SEQRES 6 B 169 VAL LEU ASN ILE SER VAL GLU THR THR LEU GLU ASP SER SEQRES 7 B 169 GLY ASP VAL ALA PHE ILE CYS GLU VAL LYS GLN ALA GLY SEQRES 8 B 169 VAL PHE THR ILE SER GLY LEU GLU ASP VAL GLN MET ALA SEQRES 9 B 169 HIS CYS LEU THR SER GLN CYS PRO ASN MET LEU PHE PRO SEQRES 10 B 169 TYR ALA ARG GLU LEU VAL SER ASN LEU VAL ASN ARG GLY SEQRES 11 B 169 THR PHE PRO ALA LEU ASN LEU SER PRO VAL ASN PHE ASP SEQRES 12 B 169 ALA LEU PHE VAL GLU TYR MET ASN ARG GLN GLN ALA GLU SEQRES 13 B 169 ASN ALA GLU GLU LYS SER GLU GLU GLU GLN THR LYS HIS SEQRES 1 C 169 MET SER GLU GLN LYS GLN ASP VAL ALA ALA THR GLU GLU SEQRES 2 C 169 GLN GLN PRO VAL LEU GLN ILE GLN ARG ILE TYR VAL LYS SEQRES 3 C 169 ASP VAL SER PHE GLU ALA PRO ASN LEU PRO HIS ILE PHE SEQRES 4 C 169 GLN GLN GLU TRP LYS PRO LYS LEU GLY PHE ASP LEU SER SEQRES 5 C 169 THR GLU THR THR GLN VAL GLY ASP ASP LEU TYR GLU VAL SEQRES 6 C 169 VAL LEU ASN ILE SER VAL GLU THR THR LEU GLU ASP SER SEQRES 7 C 169 GLY ASP VAL ALA PHE ILE CYS GLU VAL LYS GLN ALA GLY SEQRES 8 C 169 VAL PHE THR ILE SER GLY LEU GLU ASP VAL GLN MET ALA SEQRES 9 C 169 HIS CYS LEU THR SER GLN CYS PRO ASN MET LEU PHE PRO SEQRES 10 C 169 TYR ALA ARG GLU LEU VAL SER ASN LEU VAL ASN ARG GLY SEQRES 11 C 169 THR PHE PRO ALA LEU ASN LEU SER PRO VAL ASN PHE ASP SEQRES 12 C 169 ALA LEU PHE VAL GLU TYR MET ASN ARG GLN GLN ALA GLU SEQRES 13 C 169 ASN ALA GLU GLU LYS SER GLU GLU GLU GLN THR LYS HIS SEQRES 1 D 169 MET SER GLU GLN LYS GLN ASP VAL ALA ALA THR GLU GLU SEQRES 2 D 169 GLN GLN PRO VAL LEU GLN ILE GLN ARG ILE TYR VAL LYS SEQRES 3 D 169 ASP VAL SER PHE GLU ALA PRO ASN LEU PRO HIS ILE PHE SEQRES 4 D 169 GLN GLN GLU TRP LYS PRO LYS LEU GLY PHE ASP LEU SER SEQRES 5 D 169 THR GLU THR THR GLN VAL GLY ASP ASP LEU TYR GLU VAL SEQRES 6 D 169 VAL LEU ASN ILE SER VAL GLU THR THR LEU GLU ASP SER SEQRES 7 D 169 GLY ASP VAL ALA PHE ILE CYS GLU VAL LYS GLN ALA GLY SEQRES 8 D 169 VAL PHE THR ILE SER GLY LEU GLU ASP VAL GLN MET ALA SEQRES 9 D 169 HIS CYS LEU THR SER GLN CYS PRO ASN MET LEU PHE PRO SEQRES 10 D 169 TYR ALA ARG GLU LEU VAL SER ASN LEU VAL ASN ARG GLY SEQRES 11 D 169 THR PHE PRO ALA LEU ASN LEU SER PRO VAL ASN PHE ASP SEQRES 12 D 169 ALA LEU PHE VAL GLU TYR MET ASN ARG GLN GLN ALA GLU SEQRES 13 D 169 ASN ALA GLU GLU LYS SER GLU GLU GLU GLN THR LYS HIS FORMUL 5 HOH *63(H2 O) HELIX 1 1 ASN A 34 PHE A 39 1 6 HELIX 2 2 GLU A 99 SER A 109 1 11 HELIX 3 3 SER A 109 GLY A 130 1 22 HELIX 4 4 ASN A 141 ASN A 157 1 17 HELIX 5 5 PRO B 36 GLN B 41 5 6 HELIX 6 6 GLU B 99 SER B 109 1 11 HELIX 7 7 SER B 109 GLY B 130 1 22 HELIX 8 8 ASN B 141 SER B 162 1 22 HELIX 9 9 PRO C 36 GLN C 41 5 6 HELIX 10 10 GLU C 99 SER C 109 1 11 HELIX 11 11 SER C 109 GLY C 130 1 22 HELIX 12 12 ASN C 141 GLN C 154 1 14 HELIX 13 13 GLU D 99 SER D 109 1 11 HELIX 14 14 SER D 109 ASN D 128 1 20 HELIX 15 15 ASN D 141 GLU D 148 1 8 SHEET 1 A 8 LEU A 51 GLY A 59 0 SHEET 2 A 8 LEU A 62 VAL A 71 -1 O LEU A 62 N VAL A 58 SHEET 3 A 8 ILE A 84 SER A 96 -1 O CYS A 85 N VAL A 71 SHEET 4 A 8 VAL A 17 GLU A 31 -1 N VAL A 17 O SER A 96 SHEET 5 A 8 VAL B 17 GLU B 31 -1 O VAL B 28 N PHE A 30 SHEET 6 A 8 VAL B 81 SER B 96 -1 O ILE B 84 N GLU B 31 SHEET 7 A 8 LEU B 62 LEU B 75 -1 O TYR B 63 N PHE B 93 SHEET 8 A 8 PRO B 45 GLY B 59 -1 N LYS B 46 O THR B 74 SHEET 1 B 4 VAL C 17 ILE C 20 0 SHEET 2 B 4 PHE C 93 SER C 96 -1 N THR C 94 O GLN C 19 SHEET 3 B 4 LEU C 62 TYR C 63 -1 O TYR C 63 N PHE C 93 SHEET 4 B 4 GLN C 57 GLY C 59 -1 N VAL C 58 O LEU C 62 SHEET 1 C 8 PRO C 45 GLU C 54 0 SHEET 2 C 8 VAL C 66 LEU C 75 -1 N VAL C 66 O GLU C 54 SHEET 3 C 8 VAL C 81 ALA C 90 -1 N ALA C 82 O THR C 73 SHEET 4 C 8 TYR C 24 GLU C 31 -1 O TYR C 24 N ALA C 90 SHEET 5 C 8 LEU D 18 GLU D 31 -1 O VAL D 28 N PHE C 30 SHEET 6 C 8 VAL D 81 ILE D 95 -1 N ILE D 84 O GLU D 31 SHEET 7 C 8 LEU D 62 LEU D 75 -1 O TYR D 63 N PHE D 93 SHEET 8 C 8 PRO D 45 LYS D 46 -1 O LYS D 46 N THR D 74 SHEET 1 D 8 PRO C 45 GLU C 54 0 SHEET 2 D 8 VAL C 66 LEU C 75 -1 N VAL C 66 O GLU C 54 SHEET 3 D 8 VAL C 81 ALA C 90 -1 N ALA C 82 O THR C 73 SHEET 4 D 8 TYR C 24 GLU C 31 -1 O TYR C 24 N ALA C 90 SHEET 5 D 8 LEU D 18 GLU D 31 -1 O VAL D 28 N PHE C 30 SHEET 6 D 8 VAL D 81 ILE D 95 -1 N ILE D 84 O GLU D 31 SHEET 7 D 8 LEU D 62 LEU D 75 -1 O TYR D 63 N PHE D 93 SHEET 8 D 8 PHE D 49 GLY D 59 -1 O ASP D 50 N SER D 70 CISPEP 1 LEU B 35 PRO B 36 0 0.15 CISPEP 2 LEU C 35 PRO C 36 0 0.11 CISPEP 3 LEU D 35 PRO D 36 0 -0.35 CRYST1 126.344 126.344 148.333 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007915 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007915 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006742 0.00000