HEADER TRANSFERASE 06-OCT-00 1G0D TITLE CRYSTAL STRUCTURE OF RED SEA BREAM TRANSGLUTAMINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.2.13; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAGRUS MAJOR; SOURCE 3 ORGANISM_COMMON: RED SEABREAM; SOURCE 4 ORGANISM_TAXID: 143350; SOURCE 5 TISSUE: LIVER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTTNCO KEYWDS TISSUE TRANSGLUTAMINASE, ACYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.NOGUCHI,K.ISHIKAWA,K.YOKOYAMA,T.OHTSUKA,N.NIO,E.SUZUKI REVDAT 5 13-MAR-24 1G0D 1 REMARK REVDAT 4 24-FEB-09 1G0D 1 VERSN REVDAT 3 01-APR-03 1G0D 1 JRNL REVDAT 2 31-DEC-02 1G0D 1 REMARK REVDAT 1 23-MAY-01 1G0D 0 JRNL AUTH K.NOGUCHI,K.ISHIKAWA,K.I.YOKOYAMA,T.OHTSUKA,N.NIO,E.SUZUKI JRNL TITL CRYSTAL STRUCTURE OF RED SEA BREAM TRANSGLUTAMINASE. JRNL REF J.BIOL.CHEM. V. 276 12055 2001 JRNL REFN ISSN 0021-9258 JRNL PMID 11080504 JRNL DOI 10.1074/JBC.M009862200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.YOKOYAMA,Y.KIKUCHI,H.YASUEDA REMARK 1 TITL OVERPRODUCTION OF DNAJ IN ESCHERICHIA COLI IMPROVES IN VIVO REMARK 1 TITL 2 SOLUBILITY OF THE RECOMBINANT FISH-DERIVED TRANSGLUTAMINASE REMARK 1 REF BIOSCI.BIOTECHNOL.BIOCHEM. V. 62 1205 1998 REMARK 1 REFN ISSN 0916-8451 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.YASUEDA,K.NAKANISHI,Y.KUMAZAWA,K.NAGASE,M.MOTOKI,H.MATSUI REMARK 1 TITL TISSUE-TYPE TRANSGLUTAMINASE FROM RED SEA BREAM (PAGRUS REMARK 1 TITL 2 MAJOR) REMARK 1 REF EUR.J.BIOCHEM. V. 232 411 1995 REMARK 1 REFN ISSN 0014-2956 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 98.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.0 REMARK 3 NUMBER OF REFLECTIONS : 39366 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3936 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5283 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 383 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 1.990 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 28.52 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.033 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1G0D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-OCT-00. REMARK 100 THE DEPOSITION ID IS D_1000012075. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : FUJI REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39366 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.0 REMARK 200 DATA REDUNDANCY : 6.620 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.16200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PEG6000, HEPES, DTT, REMARK 280 PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 303.66667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 151.83333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 227.75000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 75.91667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 379.58333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 303.66667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 151.83333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 75.91667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 227.75000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 379.58333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 TYR A 4 REMARK 465 LYS A 5 REMARK 465 GLU A 462 REMARK 465 PRO A 463 REMARK 465 SER A 464 REMARK 465 ASN A 465 REMARK 465 GLU A 466 REMARK 465 ILE A 467 REMARK 465 ALA A 468 REMARK 465 GLU A 469 REMARK 465 GLN A 470 REMARK 465 GLY A 471 REMARK 465 GLY A 569 REMARK 465 GLU A 570 REMARK 465 ASN A 571 REMARK 465 TYR A 685 REMARK 465 ARG A 686 REMARK 465 SER A 687 REMARK 465 LEU A 688 REMARK 465 ILE A 689 REMARK 465 THR A 690 REMARK 465 GLY A 691 REMARK 465 LEU A 692 REMARK 465 HIS A 693 REMARK 465 THR A 694 REMARK 465 ASP A 695 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 298 OE1 GLU A 393 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 238 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 PRO A 239 C - N - CA ANGL. DEV. = -10.8 DEGREES REMARK 500 LEU A 361 N - CA - C ANGL. DEV. = 17.9 DEGREES REMARK 500 SER A 362 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 LEU A 509 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 PRO A 592 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 VAL A 619 CB - CA - C ANGL. DEV. = -12.6 DEGREES REMARK 500 LEU A 622 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 LEU A 628 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 VAL A 676 CB - CA - C ANGL. DEV. = -11.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 10 135.18 -171.53 REMARK 500 ASP A 28 144.80 -172.73 REMARK 500 ASP A 48 -91.52 -153.39 REMARK 500 PRO A 52 -76.96 -4.27 REMARK 500 GLU A 75 -148.14 -173.35 REMARK 500 HIS A 76 78.69 -15.03 REMARK 500 ALA A 78 -149.49 -62.82 REMARK 500 ALA A 89 -96.79 -104.55 REMARK 500 GLN A 90 -91.48 -116.78 REMARK 500 GLU A 123 149.85 -178.69 REMARK 500 ASP A 147 100.60 -163.53 REMARK 500 VAL A 155 -53.38 -129.41 REMARK 500 TYR A 169 75.25 -151.92 REMARK 500 TYR A 183 -2.23 69.98 REMARK 500 ASN A 224 -51.83 -142.68 REMARK 500 GLU A 238 -52.38 -18.63 REMARK 500 PRO A 239 93.87 -68.70 REMARK 500 TYR A 240 52.84 -90.82 REMARK 500 ASP A 242 52.92 -112.43 REMARK 500 VAL A 264 85.31 58.59 REMARK 500 PRO A 266 133.80 -39.04 REMARK 500 ALA A 297 68.99 64.16 REMARK 500 ASP A 326 72.62 -113.16 REMARK 500 SER A 327 -151.45 55.68 REMARK 500 ARG A 341 79.72 -107.49 REMARK 500 GLU A 360 -76.65 -21.22 REMARK 500 LEU A 361 32.48 -91.89 REMARK 500 ASP A 363 103.59 -42.14 REMARK 500 HIS A 416 -39.05 160.04 REMARK 500 ALA A 417 -151.45 15.86 REMARK 500 SER A 418 142.63 30.67 REMARK 500 GLN A 481 74.95 50.60 REMARK 500 GLU A 497 52.31 -101.78 REMARK 500 ASN A 516 32.25 -81.56 REMARK 500 ARG A 520 -94.25 -120.61 REMARK 500 GLU A 522 82.93 -67.65 REMARK 500 CYS A 523 30.36 -79.31 REMARK 500 GLN A 524 135.75 133.90 REMARK 500 LYS A 526 131.00 -179.11 REMARK 500 HIS A 535 35.61 39.89 REMARK 500 SER A 554 -168.70 -107.88 REMARK 500 PRO A 612 34.73 -82.17 REMARK 500 LEU A 627 -64.95 -105.32 REMARK 500 ALA A 630 127.28 -32.86 REMARK 500 SER A 642 19.93 58.86 REMARK 500 PRO A 653 154.27 -42.57 REMARK 500 ASP A 672 54.74 71.90 REMARK 500 LYS A 683 85.05 122.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 163 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 696 DBREF 1G0D A 1 695 UNP P52181 TGM2_PAGMA 1 695 SEQRES 1 A 695 MET ALA SER TYR LYS GLY LEU ILE VAL ASP VAL ASN GLY SEQRES 2 A 695 ARG SER HIS GLU ASN ASN LEU ALA HIS ARG THR ARG GLU SEQRES 3 A 695 ILE ASP ARG GLU ARG LEU ILE VAL ARG ARG GLY GLN PRO SEQRES 4 A 695 PHE SER ILE THR LEU GLN CYS SER ASP SER LEU PRO PRO SEQRES 5 A 695 LYS HIS HIS LEU GLU LEU VAL LEU HIS LEU GLY LYS ARG SEQRES 6 A 695 ASP GLU VAL VAL ILE LYS VAL GLN LYS GLU HIS GLY ALA SEQRES 7 A 695 ARG ASP LYS TRP TRP PHE ASN GLN GLN GLY ALA GLN ASP SEQRES 8 A 695 GLU ILE LEU LEU THR LEU HIS SER PRO ALA ASN ALA VAL SEQRES 9 A 695 ILE GLY HIS TYR ARG LEU ALA VAL LEU VAL MET SER PRO SEQRES 10 A 695 ASP GLY HIS ILE VAL GLU ARG ALA ASP LYS ILE SER PHE SEQRES 11 A 695 HIS MET LEU PHE ASN PRO TRP CYS ARG ASP ASP MET VAL SEQRES 12 A 695 TYR LEU PRO ASP GLU SER LYS LEU GLN GLU TYR VAL MET SEQRES 13 A 695 ASN GLU ASP GLY VAL ILE TYR MET GLY THR TRP ASP TYR SEQRES 14 A 695 ILE ARG SER ILE PRO TRP ASN TYR GLY GLN PHE GLU ASP SEQRES 15 A 695 TYR VAL MET ASP ILE CYS PHE GLU VAL LEU ASP ASN SER SEQRES 16 A 695 PRO ALA ALA LEU LYS ASN SER GLU MET ASP ILE GLU HIS SEQRES 17 A 695 ARG SER ASP PRO VAL TYR VAL GLY ARG THR ILE THR ALA SEQRES 18 A 695 MET VAL ASN SER ASN GLY ASP ARG GLY VAL LEU THR GLY SEQRES 19 A 695 ARG TRP GLU GLU PRO TYR THR ASP GLY VAL ALA PRO TYR SEQRES 20 A 695 ARG TRP THR GLY SER VAL PRO ILE LEU GLN GLN TRP SER SEQRES 21 A 695 LYS ALA GLY VAL ARG PRO VAL LYS TYR GLY GLN CYS TRP SEQRES 22 A 695 VAL PHE ALA ALA VAL ALA CYS THR VAL LEU ARG CYS LEU SEQRES 23 A 695 GLY ILE PRO THR ARG PRO ILE THR ASN PHE ALA SER ALA SEQRES 24 A 695 HIS ASP VAL ASP GLY ASN LEU SER VAL ASP PHE LEU LEU SEQRES 25 A 695 ASN GLU ARG LEU GLU SER LEU ASP SER ARG GLN ARG SER SEQRES 26 A 695 ASP SER SER TRP ASN PHE HIS CYS TRP VAL GLU SER TRP SEQRES 27 A 695 MET SER ARG GLU ASP LEU PRO GLU GLY ASN ASP GLY TRP SEQRES 28 A 695 GLN VAL LEU ASP PRO THR PRO GLN GLU LEU SER ASP GLY SEQRES 29 A 695 GLU PHE CYS CYS GLY PRO CYS PRO VAL ALA ALA ILE LYS SEQRES 30 A 695 GLU GLY ASN LEU GLY VAL LYS TYR ASP ALA PRO PHE VAL SEQRES 31 A 695 PHE ALA GLU VAL ASN ALA ASP THR ILE TYR TRP ILE VAL SEQRES 32 A 695 GLN LYS ASP GLY GLN ARG ARG LYS ILE THR GLU ASP HIS SEQRES 33 A 695 ALA SER VAL GLY LYS ASN ILE SER THR LYS SER VAL TYR SEQRES 34 A 695 GLY ASN HIS ARG GLU ASP VAL THR LEU HIS TYR LYS TYR SEQRES 35 A 695 PRO GLU GLY SER GLN LYS GLU ARG GLU VAL TYR LYS LYS SEQRES 36 A 695 ALA GLY ARG ARG VAL THR GLU PRO SER ASN GLU ILE ALA SEQRES 37 A 695 GLU GLN GLY ARG LEU GLN LEU SER ILE LYS HIS ALA GLN SEQRES 38 A 695 PRO VAL PHE GLY THR ASP PHE ASP VAL ILE VAL GLU VAL SEQRES 39 A 695 LYS ASN GLU GLY GLY ARG ASP ALA HIS ALA GLN LEU THR SEQRES 40 A 695 MET LEU ALA MET ALA VAL THR TYR ASN SER LEU ARG ARG SEQRES 41 A 695 GLY GLU CYS GLN ARG LYS THR ILE SER VAL THR VAL PRO SEQRES 42 A 695 ALA HIS LYS ALA HIS LYS GLU VAL MET ARG LEU HIS TYR SEQRES 43 A 695 ASP ASP TYR VAL ARG CYS VAL SER GLU HIS HIS LEU ILE SEQRES 44 A 695 ARG VAL LYS ALA LEU LEU ASP ALA PRO GLY GLU ASN GLY SEQRES 45 A 695 PRO ILE MET THR VAL ALA ASN ILE PRO LEU SER THR PRO SEQRES 46 A 695 GLU LEU LEU VAL GLN VAL PRO GLY LYS ALA VAL VAL TRP SEQRES 47 A 695 GLU PRO LEU THR ALA TYR VAL SER PHE THR ASN PRO LEU SEQRES 48 A 695 PRO VAL PRO LEU LYS GLY GLY VAL PHE THR LEU GLU GLY SEQRES 49 A 695 ALA GLY LEU LEU SER ALA THR GLN ILE HIS VAL ASN GLY SEQRES 50 A 695 ALA VAL ALA PRO SER GLY LYS VAL SER VAL LYS LEU SER SEQRES 51 A 695 PHE SER PRO MET ARG THR GLY VAL ARG LYS LEU LEU VAL SEQRES 52 A 695 ASP PHE ASP SER ASP ARG LEU LYS ASP VAL LYS GLY VAL SEQRES 53 A 695 THR THR VAL VAL VAL HIS LYS LYS TYR ARG SER LEU ILE SEQRES 54 A 695 THR GLY LEU HIS THR ASP HET SO4 A 696 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *383(H2 O) HELIX 1 1 ARG A 14 HIS A 22 1 9 HELIX 2 2 ASP A 147 VAL A 155 1 9 HELIX 3 3 TYR A 183 ASN A 194 1 12 HELIX 4 4 SER A 195 ASN A 201 1 7 HELIX 5 5 ASN A 201 ARG A 209 1 9 HELIX 6 6 ASP A 211 ASN A 224 1 14 HELIX 7 7 ALA A 245 TRP A 249 5 5 HELIX 8 8 SER A 252 ALA A 262 1 11 HELIX 9 9 GLN A 271 GLY A 287 1 17 HELIX 10 10 ALA A 299 ASP A 303 5 5 HELIX 11 11 VAL A 373 GLU A 378 1 6 HELIX 12 12 ASP A 386 ALA A 396 1 11 HELIX 13 13 VAL A 436 LYS A 441 1 6 HELIX 14 14 SER A 446 GLY A 457 1 12 HELIX 15 15 HIS A 545 VAL A 550 1 6 SHEET 1 A 4 ILE A 8 ASN A 12 0 SHEET 2 A 4 PHE A 40 CYS A 46 -1 N THR A 43 O ASN A 12 SHEET 3 A 4 GLU A 92 HIS A 98 -1 N ILE A 93 O LEU A 44 SHEET 4 A 4 TRP A 83 ALA A 89 -1 O TRP A 83 N HIS A 98 SHEET 1 B 4 VAL A 68 VAL A 72 0 SHEET 2 B 4 HIS A 55 LEU A 62 -1 O LEU A 58 N VAL A 72 SHEET 3 B 4 GLY A 106 MET A 115 -1 N ARG A 109 O HIS A 61 SHEET 4 B 4 ILE A 121 ARG A 124 -1 N VAL A 122 O VAL A 114 SHEET 1 C 5 VAL A 68 VAL A 72 0 SHEET 2 C 5 HIS A 55 LEU A 62 -1 O LEU A 58 N VAL A 72 SHEET 3 C 5 GLY A 106 MET A 115 -1 N ARG A 109 O HIS A 61 SHEET 4 C 5 ILE A 128 LEU A 133 -1 O ILE A 128 N LEU A 110 SHEET 5 C 5 ILE A 33 ARG A 35 1 N VAL A 34 O HIS A 131 SHEET 1 D 2 ASP A 159 THR A 166 0 SHEET 2 D 2 TYR A 169 ASN A 176 -1 O TYR A 169 N THR A 166 SHEET 1 E 2 LEU A 232 GLY A 234 0 SHEET 2 E 2 VAL A 267 GLY A 270 1 O VAL A 267 N THR A 233 SHEET 1 F 6 CYS A 368 PRO A 372 0 SHEET 2 F 6 GLY A 350 ASP A 355 -1 N VAL A 353 O CYS A 371 SHEET 3 F 6 TRP A 329 MET A 339 -1 O VAL A 335 N LEU A 354 SHEET 4 F 6 THR A 290 SER A 298 -1 O ARG A 291 N GLU A 336 SHEET 5 F 6 SER A 424 LYS A 426 -1 O SER A 424 N THR A 294 SHEET 6 F 6 ARG A 433 ASP A 435 -1 N GLU A 434 O THR A 425 SHEET 1 G 3 SER A 307 LEU A 312 0 SHEET 2 G 3 ASP A 397 VAL A 403 1 O ASP A 397 N VAL A 308 SHEET 3 G 3 ARG A 409 LYS A 411 -1 N ARG A 410 O ILE A 402 SHEET 1 H 5 THR A 413 GLU A 414 0 SHEET 2 H 5 ILE A 574 PRO A 581 1 N MET A 575 O THR A 413 SHEET 3 H 5 LEU A 558 ASP A 566 -1 O ILE A 559 N ILE A 580 SHEET 4 H 5 ALA A 502 VAL A 513 -1 O GLN A 505 N ASP A 566 SHEET 5 H 5 ARG A 525 VAL A 532 -1 O LYS A 526 N MET A 508 SHEET 1 I 3 LEU A 473 HIS A 479 0 SHEET 2 I 3 PHE A 488 ASN A 496 -1 O ILE A 491 N LYS A 478 SHEET 3 I 3 ALA A 537 LEU A 544 -1 O HIS A 538 N VAL A 494 SHEET 1 J 3 LEU A 588 GLN A 590 0 SHEET 2 J 3 LEU A 601 THR A 608 -1 N TYR A 604 O GLN A 590 SHEET 3 J 3 LYS A 644 PHE A 651 -1 N VAL A 645 O PHE A 607 SHEET 1 K 5 ALA A 595 VAL A 596 0 SHEET 2 K 5 VAL A 673 HIS A 682 1 O VAL A 680 N ALA A 595 SHEET 3 K 5 GLY A 657 ASP A 666 -1 O GLY A 657 N VAL A 681 SHEET 4 K 5 VAL A 619 GLY A 624 -1 N VAL A 619 O ASP A 666 SHEET 5 K 5 LEU A 628 HIS A 634 -1 O LEU A 628 N GLY A 624 SHEET 1 L 2 LEU A 615 LYS A 616 0 SHEET 2 L 2 ALA A 638 VAL A 639 -1 N VAL A 639 O LEU A 615 CISPEP 1 LYS A 268 TYR A 269 0 2.70 CISPEP 2 GLY A 369 PRO A 370 0 1.96 CISPEP 3 LYS A 384 TYR A 385 0 0.13 SITE 1 AC1 7 LYS A 150 ARG A 291 TRP A 351 GLU A 434 SITE 2 AC1 7 HIS A 439 HOH A 845 HOH A 931 CRYST1 97.800 97.800 455.500 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010225 0.005903 0.000000 0.00000 SCALE2 0.000000 0.011807 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002195 0.00000