data_1G5R # _entry.id 1G5R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1G5R RCSB RCSB012267 WWPDB D_1000012267 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1G5T . unspecified PDB 1G64 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1G5R _pdbx_database_status.recvd_initial_deposition_date 2000-11-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rayment, I.' 1 'Escalante-Semerena, J.C.' 2 'Bauer, C.B.' 3 # _citation.id primary _citation.title ;Three-dimensional structure of ATP:corrinoid adenosyltransferase from Salmonella typhimurium in its free state, complexed with MgATP, or complexed with hydroxycobalamin and MgATP. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 40 _citation.page_first 361 _citation.page_last 374 _citation.year 2001 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11148030 _citation.pdbx_database_id_DOI 10.1021/bi002145o # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bauer, C.B.' 1 primary 'Fonseca, M.V.' 2 primary 'Holden, H.M.' 3 primary 'Thoden, J.B.' 4 primary 'Thompson, T.B.' 5 primary 'Escalante-Semerena, J.C.' 6 primary 'Rayment, I.' 7 # _cell.entry_id 1G5R _cell.length_a 49.400 _cell.length_b 49.400 _cell.length_c 249.800 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G5R _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'COB(I)ALAMIN ADENOSYLTRANSFERASE' 22081.986 1 2.5.1.17 ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 water nat water 18.015 136 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CORRINOID ADENOSYLTRANSFERASE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)SDERYQQRQQKVKDRVDARVAQAQEERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNL LEPHGVEFQV(MSE)ATGFTWETQNREADTAAC(MSE)AVWQHGKR(MSE)LADPLLD(MSE)VVLDELTY(MSE)VAYD YLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRPVKHAFDAGVKAQ(MSE)GIDY ; _entity_poly.pdbx_seq_one_letter_code_can ;MSDERYQQRQQKVKDRVDARVAQAQEERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH GVEFQVMATGFTWETQNREADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITG RGCHRDILDLADTVSELRPVKHAFDAGVKAQMGIDY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 SER n 1 3 ASP n 1 4 GLU n 1 5 ARG n 1 6 TYR n 1 7 GLN n 1 8 GLN n 1 9 ARG n 1 10 GLN n 1 11 GLN n 1 12 LYS n 1 13 VAL n 1 14 LYS n 1 15 ASP n 1 16 ARG n 1 17 VAL n 1 18 ASP n 1 19 ALA n 1 20 ARG n 1 21 VAL n 1 22 ALA n 1 23 GLN n 1 24 ALA n 1 25 GLN n 1 26 GLU n 1 27 GLU n 1 28 ARG n 1 29 GLY n 1 30 ILE n 1 31 ILE n 1 32 ILE n 1 33 VAL n 1 34 PHE n 1 35 THR n 1 36 GLY n 1 37 ASN n 1 38 GLY n 1 39 LYS n 1 40 GLY n 1 41 LYS n 1 42 THR n 1 43 THR n 1 44 ALA n 1 45 ALA n 1 46 PHE n 1 47 GLY n 1 48 THR n 1 49 ALA n 1 50 ALA n 1 51 ARG n 1 52 ALA n 1 53 VAL n 1 54 GLY n 1 55 HIS n 1 56 GLY n 1 57 LYS n 1 58 ASN n 1 59 VAL n 1 60 GLY n 1 61 VAL n 1 62 VAL n 1 63 GLN n 1 64 PHE n 1 65 ILE n 1 66 LYS n 1 67 GLY n 1 68 THR n 1 69 TRP n 1 70 PRO n 1 71 ASN n 1 72 GLY n 1 73 GLU n 1 74 ARG n 1 75 ASN n 1 76 LEU n 1 77 LEU n 1 78 GLU n 1 79 PRO n 1 80 HIS n 1 81 GLY n 1 82 VAL n 1 83 GLU n 1 84 PHE n 1 85 GLN n 1 86 VAL n 1 87 MSE n 1 88 ALA n 1 89 THR n 1 90 GLY n 1 91 PHE n 1 92 THR n 1 93 TRP n 1 94 GLU n 1 95 THR n 1 96 GLN n 1 97 ASN n 1 98 ARG n 1 99 GLU n 1 100 ALA n 1 101 ASP n 1 102 THR n 1 103 ALA n 1 104 ALA n 1 105 CYS n 1 106 MSE n 1 107 ALA n 1 108 VAL n 1 109 TRP n 1 110 GLN n 1 111 HIS n 1 112 GLY n 1 113 LYS n 1 114 ARG n 1 115 MSE n 1 116 LEU n 1 117 ALA n 1 118 ASP n 1 119 PRO n 1 120 LEU n 1 121 LEU n 1 122 ASP n 1 123 MSE n 1 124 VAL n 1 125 VAL n 1 126 LEU n 1 127 ASP n 1 128 GLU n 1 129 LEU n 1 130 THR n 1 131 TYR n 1 132 MSE n 1 133 VAL n 1 134 ALA n 1 135 TYR n 1 136 ASP n 1 137 TYR n 1 138 LEU n 1 139 PRO n 1 140 LEU n 1 141 GLU n 1 142 GLU n 1 143 VAL n 1 144 ILE n 1 145 SER n 1 146 ALA n 1 147 LEU n 1 148 ASN n 1 149 ALA n 1 150 ARG n 1 151 PRO n 1 152 GLY n 1 153 HIS n 1 154 GLN n 1 155 THR n 1 156 VAL n 1 157 ILE n 1 158 ILE n 1 159 THR n 1 160 GLY n 1 161 ARG n 1 162 GLY n 1 163 CYS n 1 164 HIS n 1 165 ARG n 1 166 ASP n 1 167 ILE n 1 168 LEU n 1 169 ASP n 1 170 LEU n 1 171 ALA n 1 172 ASP n 1 173 THR n 1 174 VAL n 1 175 SER n 1 176 GLU n 1 177 LEU n 1 178 ARG n 1 179 PRO n 1 180 VAL n 1 181 LYS n 1 182 HIS n 1 183 ALA n 1 184 PHE n 1 185 ASP n 1 186 ALA n 1 187 GLY n 1 188 VAL n 1 189 LYS n 1 190 ALA n 1 191 GLN n 1 192 MSE n 1 193 GLY n 1 194 ILE n 1 195 ASP n 1 196 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Salmonella _entity_src_gen.pdbx_gene_src_gene COBA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Salmonella typhimurium' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 602 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Salmonella typhimurium' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 602 _entity_src_gen.host_org_genus Salmonella _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BTUR_SALTY _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSDERYQQRQQKVKDRVDARVAQAQEERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH GVEFQVMATGFTWETQNREADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITG RGCHRDILDLADTVSELRPVKHAFDAGVKAQMGIDY ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession P31570 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1G5R _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 196 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P31570 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 196 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 196 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1G5R MSE A 1 ? UNP P31570 MET 1 'MODIFIED RESIDUE' 1 1 1 1G5R MSE A 87 ? UNP P31570 MET 87 'MODIFIED RESIDUE' 87 2 1 1G5R MSE A 106 ? UNP P31570 MET 106 'MODIFIED RESIDUE' 106 3 1 1G5R MSE A 115 ? UNP P31570 MET 115 'MODIFIED RESIDUE' 115 4 1 1G5R MSE A 123 ? UNP P31570 MET 123 'MODIFIED RESIDUE' 123 5 1 1G5R MSE A 132 ? UNP P31570 MET 132 'MODIFIED RESIDUE' 132 6 1 1G5R MSE A 192 ? UNP P31570 MET 192 'MODIFIED RESIDUE' 192 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1G5R _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.99 _exptl_crystal.density_percent_sol 38.25 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method Batch _exptl_crystal_grow.temp 278 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details '13% me-peg 350, 100 mM NaCl, 50 mM MES, pH 5.5, Batch, temperature 278K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type APS-1 _diffrn_detector.pdbx_collection_date 1998-12-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'ID-19 optics' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.94290 1.0 2 0.97939 1.0 3 0.97960 1.0 4 1.0205 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.94290, 0.97939, 0.97960, 1.0205' # _reflns.entry_id 1G5R _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 100 _reflns.d_resolution_high 2.1 _reflns.number_obs 10494 _reflns.number_all 10494 _reflns.percent_possible_obs 91 _reflns.pdbx_Rmerge_I_obs 0.082 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 35.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.18 _reflns_shell.percent_possible_all 63 _reflns_shell.Rmerge_I_obs 0.177 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 2.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1G5R _refine.ls_number_reflns_obs 10482 _refine.ls_number_reflns_all 10482 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 30.0 _refine.ls_d_res_high 2.1 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.178 _refine.ls_R_factor_all 0.178 _refine.ls_R_factor_R_work 0.178 _refine.ls_R_factor_R_free 0.247 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 1033 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1207 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 136 _refine_hist.number_atoms_total 1344 _refine_hist.d_res_high 2.1 _refine_hist.d_res_low 30.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.017 ? ? ? 'X-RAY DIFFRACTION' ? t_angle_deg 2.58 ? ? ? 'X-RAY DIFFRACTION' ? t_dihedral_angle_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.1 _refine_ls_shell.d_res_low ? _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work ? _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1G5R _struct.title 'THE THREE-DIMENSIONAL STRUCTURE OF ATP:CORRINOID ADENOSYLTRANSFERASE FROM SALMONELLA TYPHIMURIUM. APO FORM' _struct.pdbx_descriptor 'COB(I)ALAMIN ADENOSYLTRANSFERASE (E.C.2.5.1.17)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1G5R _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'P-loop protein, Cobalamin biosynthesis, RecA fold, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 40 ? HIS A 55 ? GLY A 40 HIS A 55 1 ? 16 HELX_P HELX_P2 2 ASN A 71 ? GLU A 78 ? ASN A 71 GLU A 78 1 ? 8 HELX_P HELX_P3 3 PRO A 79 ? GLY A 81 ? PRO A 79 GLY A 81 5 ? 3 HELX_P HELX_P4 4 GLU A 94 ? GLN A 96 ? GLU A 94 GLN A 96 5 ? 3 HELX_P HELX_P5 5 ASN A 97 ? LEU A 116 ? ASN A 97 LEU A 116 1 ? 20 HELX_P HELX_P6 6 GLU A 128 ? TYR A 135 ? GLU A 128 TYR A 135 1 ? 8 HELX_P HELX_P7 7 PRO A 139 ? ALA A 149 ? PRO A 139 ALA A 149 1 ? 11 HELX_P HELX_P8 8 HIS A 164 ? ALA A 171 ? HIS A 164 ALA A 171 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A VAL 86 C ? ? ? 1_555 A MSE 87 N ? ? A VAL 86 A MSE 87 1_555 ? ? ? ? ? ? ? 1.294 ? covale2 covale ? ? A MSE 87 C ? ? ? 1_555 A ALA 88 N ? ? A MSE 87 A ALA 88 1_555 ? ? ? ? ? ? ? 1.346 ? covale3 covale ? ? A CYS 105 C ? ? ? 1_555 A MSE 106 N ? ? A CYS 105 A MSE 106 1_555 ? ? ? ? ? ? ? 1.341 ? covale4 covale ? ? A MSE 106 C ? ? ? 1_555 A ALA 107 N ? ? A MSE 106 A ALA 107 1_555 ? ? ? ? ? ? ? 1.321 ? covale5 covale ? ? A ARG 114 C ? ? ? 1_555 A MSE 115 N ? ? A ARG 114 A MSE 115 1_555 ? ? ? ? ? ? ? 1.324 ? covale6 covale ? ? A MSE 115 C ? ? ? 1_555 A LEU 116 N ? ? A MSE 115 A LEU 116 1_555 ? ? ? ? ? ? ? 1.301 ? covale7 covale ? ? A ASP 122 C ? ? ? 1_555 A MSE 123 N ? ? A ASP 122 A MSE 123 1_555 ? ? ? ? ? ? ? 1.321 ? covale8 covale ? ? A MSE 123 C ? ? ? 1_555 A VAL 124 N ? ? A MSE 123 A VAL 124 1_555 ? ? ? ? ? ? ? 1.321 ? covale9 covale ? ? A TYR 131 C ? ? ? 1_555 A MSE 132 N ? ? A TYR 131 A MSE 132 1_555 ? ? ? ? ? ? ? 1.343 ? covale10 covale ? ? A MSE 132 C ? ? ? 1_555 A VAL 133 N ? ? A MSE 132 A VAL 133 1_555 ? ? ? ? ? ? ? 1.347 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 83 ? VAL A 86 ? GLU A 83 VAL A 86 A 2 VAL A 59 ? GLN A 63 ? VAL A 59 GLN A 63 A 3 MSE A 123 ? ASP A 127 ? MSE A 123 ASP A 127 A 4 THR A 155 ? THR A 159 ? THR A 155 THR A 159 A 5 ILE A 31 ? THR A 35 ? ILE A 31 THR A 35 A 6 THR A 173 ? GLU A 176 ? THR A 173 GLU A 176 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 83 ? N GLU A 83 O VAL A 59 ? O VAL A 59 A 2 3 N GLY A 60 ? N GLY A 60 O MSE A 123 ? O MSE A 123 A 3 4 N VAL A 124 ? N VAL A 124 O THR A 155 ? O THR A 155 A 4 5 O VAL A 156 ? O VAL A 156 N ILE A 32 ? N ILE A 32 A 5 6 N VAL A 33 ? N VAL A 33 O THR A 173 ? O THR A 173 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE CL A 399' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GLY A 40 ? GLY A 40 . ? 1_555 ? 2 AC1 3 THR A 42 ? THR A 42 . ? 1_555 ? 3 AC1 3 THR A 43 ? THR A 43 . ? 1_555 ? # _database_PDB_matrix.entry_id 1G5R _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1G5R _atom_sites.fract_transf_matrix[1][1] 0.020243 _atom_sites.fract_transf_matrix[1][2] 0.011687 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023375 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004003 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 ASP 3 3 ? ? ? A . n A 1 4 GLU 4 4 ? ? ? A . n A 1 5 ARG 5 5 ? ? ? A . n A 1 6 TYR 6 6 ? ? ? A . n A 1 7 GLN 7 7 ? ? ? A . n A 1 8 GLN 8 8 ? ? ? A . n A 1 9 ARG 9 9 ? ? ? A . n A 1 10 GLN 10 10 ? ? ? A . n A 1 11 GLN 11 11 ? ? ? A . n A 1 12 LYS 12 12 ? ? ? A . n A 1 13 VAL 13 13 ? ? ? A . n A 1 14 LYS 14 14 ? ? ? A . n A 1 15 ASP 15 15 ? ? ? A . n A 1 16 ARG 16 16 ? ? ? A . n A 1 17 VAL 17 17 ? ? ? A . n A 1 18 ASP 18 18 ? ? ? A . n A 1 19 ALA 19 19 ? ? ? A . n A 1 20 ARG 20 20 ? ? ? A . n A 1 21 VAL 21 21 ? ? ? A . n A 1 22 ALA 22 22 ? ? ? A . n A 1 23 GLN 23 23 ? ? ? A . n A 1 24 ALA 24 24 ? ? ? A . n A 1 25 GLN 25 25 ? ? ? A . n A 1 26 GLU 26 26 ? ? ? A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 HIS 55 55 55 HIS HIS A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 ASN 58 58 58 ASN ASN A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 GLN 63 63 63 GLN GLN A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 TRP 69 69 69 TRP TRP A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 ASN 75 75 75 ASN ASN A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 HIS 80 80 80 HIS HIS A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 PHE 84 84 84 PHE PHE A . n A 1 85 GLN 85 85 85 GLN GLN A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 MSE 87 87 87 MSE MSE A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 PHE 91 91 91 PHE PHE A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 TRP 93 93 93 TRP TRP A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 GLN 96 96 96 GLN GLN A . n A 1 97 ASN 97 97 97 ASN ASN A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 CYS 105 105 105 CYS CYS A . n A 1 106 MSE 106 106 106 MSE MSE A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 TRP 109 109 109 TRP TRP A . n A 1 110 GLN 110 110 110 GLN GLN A . n A 1 111 HIS 111 111 111 HIS HIS A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 MSE 115 115 115 MSE MSE A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 ASP 118 118 118 ASP ASP A . n A 1 119 PRO 119 119 119 PRO PRO A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 ASP 122 122 122 ASP ASP A . n A 1 123 MSE 123 123 123 MSE MSE A . n A 1 124 VAL 124 124 124 VAL VAL A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 ASP 127 127 127 ASP ASP A . n A 1 128 GLU 128 128 128 GLU GLU A . n A 1 129 LEU 129 129 129 LEU LEU A . n A 1 130 THR 130 130 130 THR THR A . n A 1 131 TYR 131 131 131 TYR TYR A . n A 1 132 MSE 132 132 132 MSE MSE A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 TYR 135 135 135 TYR TYR A . n A 1 136 ASP 136 136 136 ASP ASP A . n A 1 137 TYR 137 137 137 TYR TYR A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 PRO 139 139 139 PRO PRO A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 GLU 142 142 142 GLU GLU A . n A 1 143 VAL 143 143 143 VAL VAL A . n A 1 144 ILE 144 144 144 ILE ILE A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 ASN 148 148 148 ASN ASN A . n A 1 149 ALA 149 149 149 ALA ALA A . n A 1 150 ARG 150 150 150 ARG ARG A . n A 1 151 PRO 151 151 151 PRO PRO A . n A 1 152 GLY 152 152 152 GLY GLY A . n A 1 153 HIS 153 153 153 HIS HIS A . n A 1 154 GLN 154 154 154 GLN GLN A . n A 1 155 THR 155 155 155 THR THR A . n A 1 156 VAL 156 156 156 VAL VAL A . n A 1 157 ILE 157 157 157 ILE ILE A . n A 1 158 ILE 158 158 158 ILE ILE A . n A 1 159 THR 159 159 159 THR THR A . n A 1 160 GLY 160 160 160 GLY GLY A . n A 1 161 ARG 161 161 161 ARG ARG A . n A 1 162 GLY 162 162 162 GLY GLY A . n A 1 163 CYS 163 163 163 CYS CYS A . n A 1 164 HIS 164 164 164 HIS HIS A . n A 1 165 ARG 165 165 165 ARG ARG A . n A 1 166 ASP 166 166 166 ASP ASP A . n A 1 167 ILE 167 167 167 ILE ILE A . n A 1 168 LEU 168 168 168 LEU LEU A . n A 1 169 ASP 169 169 169 ASP ASP A . n A 1 170 LEU 170 170 170 LEU LEU A . n A 1 171 ALA 171 171 171 ALA ALA A . n A 1 172 ASP 172 172 172 ASP ASP A . n A 1 173 THR 173 173 173 THR THR A . n A 1 174 VAL 174 174 174 VAL VAL A . n A 1 175 SER 175 175 175 SER SER A . n A 1 176 GLU 176 176 176 GLU GLU A . n A 1 177 LEU 177 177 177 LEU LEU A . n A 1 178 ARG 178 178 178 ARG ARG A . n A 1 179 PRO 179 179 179 PRO PRO A . n A 1 180 VAL 180 180 180 VAL VAL A . n A 1 181 LYS 181 181 181 LYS LYS A . n A 1 182 HIS 182 182 182 HIS HIS A . n A 1 183 ALA 183 183 183 ALA ALA A . n A 1 184 PHE 184 184 ? ? ? A . n A 1 185 ASP 185 185 ? ? ? A . n A 1 186 ALA 186 186 ? ? ? A . n A 1 187 GLY 187 187 ? ? ? A . n A 1 188 VAL 188 188 ? ? ? A . n A 1 189 LYS 189 189 ? ? ? A . n A 1 190 ALA 190 190 ? ? ? A . n A 1 191 GLN 191 191 ? ? ? A . n A 1 192 MSE 192 192 ? ? ? A . n A 1 193 GLY 193 193 ? ? ? A . n A 1 194 ILE 194 194 ? ? ? A . n A 1 195 ASP 195 195 ? ? ? A . n A 1 196 TYR 196 196 ? ? ? A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 87 A MSE 87 ? MET SELENOMETHIONINE 2 A MSE 106 A MSE 106 ? MET SELENOMETHIONINE 3 A MSE 115 A MSE 115 ? MET SELENOMETHIONINE 4 A MSE 123 A MSE 123 ? MET SELENOMETHIONINE 5 A MSE 132 A MSE 132 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 software_defined_assembly PISA,PQS dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C 2 1,3 A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 3240 ? 2 MORE -41 ? 2 'SSA (A^2)' 14130 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5000000000 -0.8660254038 0.0000000000 24.7000000000 -0.8660254038 -0.5000000000 0.0000000000 42.7816549470 0.0000000000 0.0000000000 -1.0000000000 41.6333333333 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-11-22 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SOLVE phasing . ? 1 TNT refinement . ? 2 d*TREK 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A GLU 83 ? ? OE1 A GLU 83 ? ? 1.180 1.252 -0.072 0.011 N 2 1 CD A GLU 99 ? ? OE2 A GLU 99 ? ? 1.323 1.252 0.071 0.011 N 3 1 CD A GLU 141 ? A OE2 A GLU 141 ? A 1.318 1.252 0.066 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A TRP 69 ? ? N A PRO 70 ? ? CD A PRO 70 ? ? 112.38 128.40 -16.02 2.10 Y 2 1 NE A ARG 74 ? ? CZ A ARG 74 ? ? NH2 A ARG 74 ? ? 115.98 120.30 -4.32 0.50 N 3 1 NE A ARG 98 ? ? CZ A ARG 98 ? ? NH1 A ARG 98 ? ? 123.75 120.30 3.45 0.50 N 4 1 CB A ASP 118 ? ? CG A ASP 118 ? ? OD1 A ASP 118 ? ? 125.21 118.30 6.91 0.90 N 5 1 CB A ASP 118 ? ? CG A ASP 118 ? ? OD2 A ASP 118 ? ? 110.55 118.30 -7.75 0.90 N 6 1 NE A ARG 165 ? ? CZ A ARG 165 ? ? NH1 A ARG 165 ? ? 124.27 120.30 3.97 0.50 N 7 1 CB A ASP 166 ? ? CG A ASP 166 ? ? OD1 A ASP 166 ? ? 124.18 118.30 5.88 0.90 N 8 1 CB A ASP 166 ? ? CG A ASP 166 ? ? OD2 A ASP 166 ? ? 109.87 118.30 -8.43 0.90 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id THR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 35 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -124.88 _pdbx_validate_torsion.psi -161.70 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A ASP 3 ? A ASP 3 4 1 Y 1 A GLU 4 ? A GLU 4 5 1 Y 1 A ARG 5 ? A ARG 5 6 1 Y 1 A TYR 6 ? A TYR 6 7 1 Y 1 A GLN 7 ? A GLN 7 8 1 Y 1 A GLN 8 ? A GLN 8 9 1 Y 1 A ARG 9 ? A ARG 9 10 1 Y 1 A GLN 10 ? A GLN 10 11 1 Y 1 A GLN 11 ? A GLN 11 12 1 Y 1 A LYS 12 ? A LYS 12 13 1 Y 1 A VAL 13 ? A VAL 13 14 1 Y 1 A LYS 14 ? A LYS 14 15 1 Y 1 A ASP 15 ? A ASP 15 16 1 Y 1 A ARG 16 ? A ARG 16 17 1 Y 1 A VAL 17 ? A VAL 17 18 1 Y 1 A ASP 18 ? A ASP 18 19 1 Y 1 A ALA 19 ? A ALA 19 20 1 Y 1 A ARG 20 ? A ARG 20 21 1 Y 1 A VAL 21 ? A VAL 21 22 1 Y 1 A ALA 22 ? A ALA 22 23 1 Y 1 A GLN 23 ? A GLN 23 24 1 Y 1 A ALA 24 ? A ALA 24 25 1 Y 1 A GLN 25 ? A GLN 25 26 1 Y 1 A GLU 26 ? A GLU 26 27 1 Y 1 A PHE 184 ? A PHE 184 28 1 Y 1 A ASP 185 ? A ASP 185 29 1 Y 1 A ALA 186 ? A ALA 186 30 1 Y 1 A GLY 187 ? A GLY 187 31 1 Y 1 A VAL 188 ? A VAL 188 32 1 Y 1 A LYS 189 ? A LYS 189 33 1 Y 1 A ALA 190 ? A ALA 190 34 1 Y 1 A GLN 191 ? A GLN 191 35 1 Y 1 A MSE 192 ? A MSE 192 36 1 Y 1 A GLY 193 ? A GLY 193 37 1 Y 1 A ILE 194 ? A ILE 194 38 1 Y 1 A ASP 195 ? A ASP 195 39 1 Y 1 A TYR 196 ? A TYR 196 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 399 399 CL CL- A . C 3 HOH 1 201 201 HOH HOH A . C 3 HOH 2 202 202 HOH HOH A . C 3 HOH 3 203 203 HOH HOH A . C 3 HOH 4 204 204 HOH HOH A . C 3 HOH 5 205 205 HOH HOH A . C 3 HOH 6 206 206 HOH HOH A . C 3 HOH 7 208 208 HOH HOH A . C 3 HOH 8 210 210 HOH HOH A . C 3 HOH 9 211 211 HOH HOH A . C 3 HOH 10 213 213 HOH HOH A . C 3 HOH 11 215 215 HOH HOH A . C 3 HOH 12 216 216 HOH HOH A . C 3 HOH 13 218 218 HOH HOH A . C 3 HOH 14 220 220 HOH HOH A . C 3 HOH 15 221 221 HOH HOH A . C 3 HOH 16 222 222 HOH HOH A . C 3 HOH 17 223 223 HOH HOH A . C 3 HOH 18 224 224 HOH HOH A . C 3 HOH 19 225 225 HOH HOH A . C 3 HOH 20 226 226 HOH HOH A . C 3 HOH 21 227 227 HOH HOH A . C 3 HOH 22 228 228 HOH HOH A . C 3 HOH 23 229 229 HOH HOH A . C 3 HOH 24 230 230 HOH HOH A . C 3 HOH 25 231 231 HOH HOH A . C 3 HOH 26 233 233 HOH HOH A . C 3 HOH 27 234 234 HOH HOH A . C 3 HOH 28 236 236 HOH HOH A . C 3 HOH 29 237 237 HOH HOH A . C 3 HOH 30 238 238 HOH HOH A . C 3 HOH 31 239 239 HOH HOH A . C 3 HOH 32 240 240 HOH HOH A . C 3 HOH 33 241 241 HOH HOH A . C 3 HOH 34 242 242 HOH HOH A . C 3 HOH 35 243 243 HOH HOH A . C 3 HOH 36 244 244 HOH HOH A . C 3 HOH 37 245 245 HOH HOH A . C 3 HOH 38 246 246 HOH HOH A . C 3 HOH 39 247 247 HOH HOH A . C 3 HOH 40 248 248 HOH HOH A . C 3 HOH 41 249 249 HOH HOH A . C 3 HOH 42 250 250 HOH HOH A . C 3 HOH 43 251 251 HOH HOH A . C 3 HOH 44 252 252 HOH HOH A . C 3 HOH 45 253 253 HOH HOH A . C 3 HOH 46 254 254 HOH HOH A . C 3 HOH 47 258 258 HOH HOH A . C 3 HOH 48 259 259 HOH HOH A . C 3 HOH 49 260 260 HOH HOH A . C 3 HOH 50 262 262 HOH HOH A . C 3 HOH 51 265 265 HOH HOH A . C 3 HOH 52 268 268 HOH HOH A . C 3 HOH 53 269 269 HOH HOH A . C 3 HOH 54 270 270 HOH HOH A . C 3 HOH 55 271 271 HOH HOH A . C 3 HOH 56 272 272 HOH HOH A . C 3 HOH 57 273 273 HOH HOH A . C 3 HOH 58 274 274 HOH HOH A . C 3 HOH 59 275 275 HOH HOH A . C 3 HOH 60 276 276 HOH HOH A . C 3 HOH 61 277 277 HOH HOH A . C 3 HOH 62 278 278 HOH HOH A . C 3 HOH 63 279 279 HOH HOH A . C 3 HOH 64 280 280 HOH HOH A . C 3 HOH 65 281 281 HOH HOH A . C 3 HOH 66 282 282 HOH HOH A . C 3 HOH 67 283 283 HOH HOH A . C 3 HOH 68 284 284 HOH HOH A . C 3 HOH 69 285 285 HOH HOH A . C 3 HOH 70 286 286 HOH HOH A . C 3 HOH 71 287 287 HOH HOH A . C 3 HOH 72 288 288 HOH HOH A . C 3 HOH 73 289 289 HOH HOH A . C 3 HOH 74 291 291 HOH HOH A . C 3 HOH 75 292 292 HOH HOH A . C 3 HOH 76 294 294 HOH HOH A . C 3 HOH 77 295 295 HOH HOH A . C 3 HOH 78 296 296 HOH HOH A . C 3 HOH 79 297 297 HOH HOH A . C 3 HOH 80 298 298 HOH HOH A . C 3 HOH 81 300 300 HOH HOH A . C 3 HOH 82 301 301 HOH HOH A . C 3 HOH 83 303 303 HOH HOH A . C 3 HOH 84 304 304 HOH HOH A . C 3 HOH 85 305 305 HOH HOH A . C 3 HOH 86 306 306 HOH HOH A . C 3 HOH 87 307 307 HOH HOH A . C 3 HOH 88 308 308 HOH HOH A . C 3 HOH 89 309 309 HOH HOH A . C 3 HOH 90 310 310 HOH HOH A . C 3 HOH 91 312 312 HOH HOH A . C 3 HOH 92 314 314 HOH HOH A . C 3 HOH 93 315 315 HOH HOH A . C 3 HOH 94 316 316 HOH HOH A . C 3 HOH 95 317 317 HOH HOH A . C 3 HOH 96 318 318 HOH HOH A . C 3 HOH 97 319 319 HOH HOH A . C 3 HOH 98 320 320 HOH HOH A . C 3 HOH 99 322 322 HOH HOH A . C 3 HOH 100 323 323 HOH HOH A . C 3 HOH 101 324 324 HOH HOH A . C 3 HOH 102 327 327 HOH HOH A . C 3 HOH 103 328 328 HOH HOH A . C 3 HOH 104 330 330 HOH HOH A . C 3 HOH 105 331 331 HOH HOH A . C 3 HOH 106 332 332 HOH HOH A . C 3 HOH 107 333 333 HOH HOH A . C 3 HOH 108 334 334 HOH HOH A . C 3 HOH 109 336 336 HOH HOH A . C 3 HOH 110 337 337 HOH HOH A . C 3 HOH 111 340 340 HOH HOH A . C 3 HOH 112 343 343 HOH HOH A . C 3 HOH 113 344 344 HOH HOH A . C 3 HOH 114 348 348 HOH HOH A . C 3 HOH 115 349 349 HOH HOH A . C 3 HOH 116 350 350 HOH HOH A . C 3 HOH 117 361 361 HOH HOH A . C 3 HOH 118 362 362 HOH HOH A . C 3 HOH 119 363 363 HOH HOH A . C 3 HOH 120 365 365 HOH HOH A . C 3 HOH 121 366 366 HOH HOH A . C 3 HOH 122 367 367 HOH HOH A . C 3 HOH 123 368 368 HOH HOH A . C 3 HOH 124 369 369 HOH HOH A . C 3 HOH 125 370 370 HOH HOH A . C 3 HOH 126 371 371 HOH HOH A . C 3 HOH 127 372 372 HOH HOH A . C 3 HOH 128 374 374 HOH HOH A . C 3 HOH 129 376 376 HOH HOH A . C 3 HOH 130 378 378 HOH HOH A . C 3 HOH 131 382 382 HOH HOH A . C 3 HOH 132 383 383 HOH HOH A . C 3 HOH 133 384 384 HOH HOH A . C 3 HOH 134 385 385 HOH HOH A . C 3 HOH 135 388 388 HOH HOH A . C 3 HOH 136 389 389 HOH HOH A . #