data_1GCC # _entry.id 1GCC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1GCC pdb_00001gcc 10.2210/pdb1gcc/pdb WWPDB D_1000173514 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1GCC _pdbx_database_status.recvd_initial_deposition_date 1998-03-13 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yamasaki, K.' 1 'Allen, M.D.' 2 'Ohme-Takagi, M.' 3 'Tateno, M.' 4 'Suzuki, M.' 5 # _citation.id primary _citation.title ;A novel mode of DNA recognition by a beta-sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA. ; _citation.journal_abbrev 'EMBO J.' _citation.journal_volume 17 _citation.page_first 5484 _citation.page_last 5496 _citation.year 1998 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9736626 _citation.pdbx_database_id_DOI 10.1093/emboj/17.18.5484 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Allen, M.D.' 1 ? primary 'Yamasaki, K.' 2 ? primary 'Ohme-Takagi, M.' 3 ? primary 'Tateno, M.' 4 ? primary 'Suzuki, M.' 5 ? # _cell.entry_id 1GCC _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GCC _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*AP*GP*CP*CP*GP*CP*CP*AP*GP*C)-3') ; 3319.175 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*CP*TP*GP*GP*CP*GP*GP*CP*TP*A)-3') ; 3390.209 1 ? ? ? ? 3 polymer man 'ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1' 7247.318 1 ? ? 'GCC-BOX BINDING DOMAIN' ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DA)(DG)(DC)(DC)(DG)(DC)(DC)(DA)(DG)(DC)' TAGCCGCCAGC B ? 2 polydeoxyribonucleotide no no '(DG)(DC)(DT)(DG)(DG)(DC)(DG)(DG)(DC)(DT)(DA)' GCTGGCGGCTA C ? 3 'polypeptide(L)' no no KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DG n 1 4 DC n 1 5 DC n 1 6 DG n 1 7 DC n 1 8 DC n 1 9 DA n 1 10 DG n 1 11 DC n 2 1 DG n 2 2 DC n 2 3 DT n 2 4 DG n 2 5 DG n 2 6 DC n 2 7 DG n 2 8 DG n 2 9 DC n 2 10 DT n 2 11 DA n 3 1 LYS n 3 2 HIS n 3 3 TYR n 3 4 ARG n 3 5 GLY n 3 6 VAL n 3 7 ARG n 3 8 GLN n 3 9 ARG n 3 10 PRO n 3 11 TRP n 3 12 GLY n 3 13 LYS n 3 14 PHE n 3 15 ALA n 3 16 ALA n 3 17 GLU n 3 18 ILE n 3 19 ARG n 3 20 ASP n 3 21 PRO n 3 22 ALA n 3 23 LYS n 3 24 ASN n 3 25 GLY n 3 26 ALA n 3 27 ARG n 3 28 VAL n 3 29 TRP n 3 30 LEU n 3 31 GLY n 3 32 THR n 3 33 PHE n 3 34 GLU n 3 35 THR n 3 36 ALA n 3 37 GLU n 3 38 ASP n 3 39 ALA n 3 40 ALA n 3 41 LEU n 3 42 ALA n 3 43 TYR n 3 44 ASP n 3 45 ARG n 3 46 ALA n 3 47 ALA n 3 48 PHE n 3 49 ARG n 3 50 MET n 3 51 ARG n 3 52 GLY n 3 53 SER n 3 54 ARG n 3 55 ALA n 3 56 LEU n 3 57 LEU n 3 58 ASN n 3 59 PHE n 3 60 PRO n 3 61 LEU n 3 62 ARG n 3 63 VAL n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'thale cress' _entity_src_gen.gene_src_genus Arabidopsis _entity_src_gen.pdbx_gene_src_gene ATERF1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Arabidopsis thaliana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line BL21 _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PAF104 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'DNA-BINDING DOMAIN OF ATERF1;' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP ERF1A_ARATH 3 ? ? O80337 ? 2 PDB 1GCC 1 ? ? 1GCC ? 3 PDB 1GCC 2 ? ? 1GCC ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1GCC A 1 ? 63 ? O80337 144 ? 206 ? 144 206 2 2 1GCC B 1 ? 11 ? 1GCC 3 ? 13 ? 3 13 3 3 1GCC C 1 ? 11 ? 1GCC 14 ? 24 ? 14 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 TOCSY 1 3 1 DQF-COSY 1 4 1 '1H-15N HSQC' 1 5 1 '3D 1H-15N NOESY-HMQC' 1 6 1 '3D 1H-15N TOCSY-HMQC' 1 7 1 13C 1 8 1 '15N-FILTERED NOESY' 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '90 mM' _pdbx_nmr_exptl_sample_conditions.pressure_units ATMOSPHERE _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents 'POTASIUM PHOSPHATE' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength 1 DMX750 Bruker 750 2 DMX500 Bruker 500 # _pdbx_nmr_refine.entry_id 1GCC _pdbx_nmr_refine.method ;SIMULATED ANNEALING PROTOCOL IN X-PLOR 3.1 WAS CARRIED OUT TO OBTAIN 25 STRUCTURES. MINIMIZED MEAN STRUCTURE OF THEM WAS FURTHER REVISED BY A 300 PS RESTRAINED MOLECULAR DYNAMICAL CALCULATION IN THE PRESENCE OF APPROXIMATELY 5000 TIP3P WATER MOLSCULES, USING CORNELL FORCE FIELD IN AMBER 4.1. THE MEAN CO-ORDINATE OF 200 STRUCTURES OBTAINED AFTER THE EQUILIBRIUM (100 PS) WAS ENERGY-MINIMIZED. ; _pdbx_nmr_refine.details ;SEE REMARK 210 OTHER PROGRAMS USED: AMBER 4.1 AUTHORS: PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM III, FERGUSON,SEIBEL,SINGH,WEINER,KOLLMAN ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1GCC _pdbx_nmr_details.text ;SIGNALS DUE TO PROTEINS WERE OBTAINED BY NOESY, TOCSY, DQF-COSY FOR UNLABELED SAMPLE AND 1H-15N HSQC, 3D 1H-15N NOESY-HMQC AND 3D 1H-15N TOCSY-HMQC FOR THE SAMPLE WITH 15N-LABELED PROTEIN. SIGNALS DUE TO DNA WERE OBTAINED BY NOESY, TOCSY, AND DQF-COSY FOR UNLABELED SAMPLE AND 13C,15N-FILTERED NOESY FOR SAMPLE WITH 13C, 15N-LABELED PROTEIN. INTERMOLECULAR NOES WERE IDENTIFIED USING NOESY SPECTRA INCLUDING THOSE WITH AND WITHOUT 13C- OR 15N-DECOUPLING FOR SAMPLE WITH 13C,15N-LABELED PROTEIN. ; # _pdbx_nmr_ensemble.entry_id 1GCC _pdbx_nmr_ensemble.conformers_calculated_total_number 1 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement X-PLOR 3.1 BRUNGER 1 'structure solution' X-PLOR 3.1 ? 2 'structure solution' Amber 4.1 ? 3 # _exptl.entry_id 1GCC _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1GCC _struct.title 'SOLUTION NMR STRUCTURE OF THE COMPLEX OF GCC-BOX BINDING DOMAIN OF ATERF1 AND GCC-BOX DNA, MINIMIZED AVERAGE STRUCTURE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1GCC _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'TRANSCRIPTION FACTOR, PROTEIN-DNA COMPLEX, ETHYLENE INDUCIBLE, COMPLEX (TRANSCRIPTION FACTOR-DNA), TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ALA _struct_conf.beg_label_asym_id C _struct_conf.beg_label_seq_id 36 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ARG _struct_conf.end_label_asym_id C _struct_conf.end_label_seq_id 51 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ALA _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 179 _struct_conf.end_auth_comp_id ARG _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 194 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C LYS 1 C ? ? ? 1_555 C HIS 2 N ? ? A LYS 144 A HIS 145 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale2 covale both ? C HIS 2 C ? ? ? 1_555 C TYR 3 N ? ? A HIS 145 A TYR 146 1_555 ? ? ? ? ? ? ? 1.338 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 11 N1 ? ? B DT 3 C DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 11 N6 ? ? B DT 3 C DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 10 N3 ? ? B DA 4 C DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 10 O4 ? ? B DA 4 C DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 9 N3 ? ? B DG 5 C DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 9 O2 ? ? B DG 5 C DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 9 N4 ? ? B DG 5 C DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 8 N1 ? ? B DC 6 C DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 8 O6 ? ? B DC 6 C DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 8 N2 ? ? B DC 6 C DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 7 N1 ? ? B DC 7 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 7 O6 ? ? B DC 7 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 7 N2 ? ? B DC 7 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 6 N3 ? ? B DG 8 C DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 6 O2 ? ? B DG 8 C DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 6 N4 ? ? B DG 8 C DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 5 N1 ? ? B DC 9 C DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 5 O6 ? ? B DC 9 C DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 5 N2 ? ? B DC 9 C DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 4 N1 ? ? B DC 10 C DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 4 O6 ? ? B DC 10 C DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 4 N2 ? ? B DC 10 C DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 3 N3 ? ? B DA 11 C DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 3 O4 ? ? B DA 11 C DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 2 N3 ? ? B DG 12 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 2 O2 ? ? B DG 12 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 2 N4 ? ? B DG 12 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 1 N1 ? ? B DC 13 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 1 O6 ? ? B DC 13 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 1 N2 ? ? B DC 13 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL C 6 ? ARG C 9 ? VAL A 149 ARG A 152 A 2 LYS C 13 ? ASP C 20 ? LYS A 156 ASP A 163 A 3 ALA C 26 ? PHE C 33 ? ALA A 169 PHE A 176 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ARG C 7 ? O ARG A 150 N ALA C 15 ? N ALA A 158 A 2 3 O PHE C 14 ? O PHE A 157 N PHE C 33 ? N PHE A 176 # _database_PDB_matrix.entry_id 1GCC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1GCC _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 3 3 DT T B . n A 1 2 DA 2 4 4 DA A B . n A 1 3 DG 3 5 5 DG G B . n A 1 4 DC 4 6 6 DC C B . n A 1 5 DC 5 7 7 DC C B . n A 1 6 DG 6 8 8 DG G B . n A 1 7 DC 7 9 9 DC C B . n A 1 8 DC 8 10 10 DC C B . n A 1 9 DA 9 11 11 DA A B . n A 1 10 DG 10 12 12 DG G B . n A 1 11 DC 11 13 13 DC C B . n B 2 1 DG 1 14 14 DG G C . n B 2 2 DC 2 15 15 DC C C . n B 2 3 DT 3 16 16 DT T C . n B 2 4 DG 4 17 17 DG G C . n B 2 5 DG 5 18 18 DG G C . n B 2 6 DC 6 19 19 DC C C . n B 2 7 DG 7 20 20 DG G C . n B 2 8 DG 8 21 21 DG G C . n B 2 9 DC 9 22 22 DC C C . n B 2 10 DT 10 23 23 DT T C . n B 2 11 DA 11 24 24 DA A C . n C 3 1 LYS 1 144 144 LYS LYS A . n C 3 2 HIS 2 145 145 HIS HIS A . n C 3 3 TYR 3 146 146 TYR TYR A . n C 3 4 ARG 4 147 147 ARG ARG A . n C 3 5 GLY 5 148 148 GLY GLY A . n C 3 6 VAL 6 149 149 VAL VAL A . n C 3 7 ARG 7 150 150 ARG ARG A . n C 3 8 GLN 8 151 151 GLN GLN A . n C 3 9 ARG 9 152 152 ARG ARG A . n C 3 10 PRO 10 153 153 PRO PRO A . n C 3 11 TRP 11 154 154 TRP TRP A . n C 3 12 GLY 12 155 155 GLY GLY A . n C 3 13 LYS 13 156 156 LYS LYS A . n C 3 14 PHE 14 157 157 PHE PHE A . n C 3 15 ALA 15 158 158 ALA ALA A . n C 3 16 ALA 16 159 159 ALA ALA A . n C 3 17 GLU 17 160 160 GLU GLU A . n C 3 18 ILE 18 161 161 ILE ILE A . n C 3 19 ARG 19 162 162 ARG ARG A . n C 3 20 ASP 20 163 163 ASP ASP A . n C 3 21 PRO 21 164 164 PRO PRO A . n C 3 22 ALA 22 165 165 ALA ALA A . n C 3 23 LYS 23 166 166 LYS LYS A . n C 3 24 ASN 24 167 167 ASN ASN A . n C 3 25 GLY 25 168 168 GLY GLY A . n C 3 26 ALA 26 169 169 ALA ALA A . n C 3 27 ARG 27 170 170 ARG ARG A . n C 3 28 VAL 28 171 171 VAL VAL A . n C 3 29 TRP 29 172 172 TRP TRP A . n C 3 30 LEU 30 173 173 LEU LEU A . n C 3 31 GLY 31 174 174 GLY GLY A . n C 3 32 THR 32 175 175 THR THR A . n C 3 33 PHE 33 176 176 PHE PHE A . n C 3 34 GLU 34 177 177 GLU GLU A . n C 3 35 THR 35 178 178 THR THR A . n C 3 36 ALA 36 179 179 ALA ALA A . n C 3 37 GLU 37 180 180 GLU GLU A . n C 3 38 ASP 38 181 181 ASP ASP A . n C 3 39 ALA 39 182 182 ALA ALA A . n C 3 40 ALA 40 183 183 ALA ALA A . n C 3 41 LEU 41 184 184 LEU LEU A . n C 3 42 ALA 42 185 185 ALA ALA A . n C 3 43 TYR 43 186 186 TYR TYR A . n C 3 44 ASP 44 187 187 ASP ASP A . n C 3 45 ARG 45 188 188 ARG ARG A . n C 3 46 ALA 46 189 189 ALA ALA A . n C 3 47 ALA 47 190 190 ALA ALA A . n C 3 48 PHE 48 191 191 PHE PHE A . n C 3 49 ARG 49 192 192 ARG ARG A . n C 3 50 MET 50 193 193 MET MET A . n C 3 51 ARG 51 194 194 ARG ARG A . n C 3 52 GLY 52 195 195 GLY GLY A . n C 3 53 SER 53 196 196 SER SER A . n C 3 54 ARG 54 197 197 ARG ARG A . n C 3 55 ALA 55 198 198 ALA ALA A . n C 3 56 LEU 56 199 199 LEU LEU A . n C 3 57 LEU 57 200 200 LEU LEU A . n C 3 58 ASN 58 201 201 ASN ASN A . n C 3 59 PHE 59 202 202 PHE PHE A . n C 3 60 PRO 60 203 203 PRO PRO A . n C 3 61 LEU 61 204 204 LEU LEU A . n C 3 62 ARG 62 205 205 ARG ARG A . n C 3 63 VAL 63 206 206 VAL VAL A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-03-23 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_pdbx_nmr_software.name' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.1 ? 1 X-PLOR refinement 3.1 ? 2 X-PLOR phasing 3.1 ? 3 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DC 6 ? ? "C4'" B DC 6 ? ? "C3'" B DC 6 ? ? 109.73 106.00 3.73 0.60 N 2 1 "O4'" B DC 10 ? ? "C4'" B DC 10 ? ? "C3'" B DC 10 ? ? 109.70 106.00 3.70 0.60 N 3 1 "O4'" C DC 15 ? ? "C1'" C DC 15 ? ? N1 C DC 15 ? ? 110.29 108.30 1.99 0.30 N 4 1 "O4'" C DT 16 ? ? "C4'" C DT 16 ? ? "C3'" C DT 16 ? ? 110.00 106.00 4.00 0.60 N 5 1 "O4'" C DG 18 ? ? "C1'" C DG 18 ? ? N9 C DG 18 ? ? 110.35 108.30 2.05 0.30 N 6 1 "O4'" C DG 20 ? ? "C1'" C DG 20 ? ? N9 C DG 20 ? ? 110.40 108.30 2.10 0.30 N 7 1 "O4'" C DC 22 ? ? "C4'" C DC 22 ? ? "C3'" C DC 22 ? ? 109.71 106.00 3.71 0.60 N 8 1 NE A ARG 147 ? ? CZ A ARG 147 ? ? NH1 A ARG 147 ? ? 124.38 120.30 4.08 0.50 N 9 1 NE A ARG 150 ? ? CZ A ARG 150 ? ? NH1 A ARG 150 ? ? 123.61 120.30 3.31 0.50 N 10 1 NE A ARG 150 ? ? CZ A ARG 150 ? ? NH2 A ARG 150 ? ? 116.94 120.30 -3.36 0.50 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ARG _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 197 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 51.83 _pdbx_validate_torsion.psi 74.04 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC B 7 ? ? 0.075 'SIDE CHAIN' 2 1 DT C 16 ? ? 0.068 'SIDE CHAIN' 3 1 DG C 17 ? ? 0.064 'SIDE CHAIN' 4 1 DC C 19 ? ? 0.089 'SIDE CHAIN' 5 1 DC C 22 ? ? 0.071 'SIDE CHAIN' 6 1 ARG A 147 ? ? 0.137 'SIDE CHAIN' 7 1 ARG A 170 ? ? 0.076 'SIDE CHAIN' 8 1 TYR A 186 ? ? 0.096 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1GCC 'double helix' 1GCC 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 11 1_555 0.063 -0.200 -0.214 0.405 -7.228 -4.445 1 B_DT3:DA24_C B 3 ? C 24 ? 20 1 1 A DA 2 1_555 B DT 10 1_555 0.079 -0.194 -0.343 -5.458 -1.154 -4.874 2 B_DA4:DT23_C B 4 ? C 23 ? 20 1 1 A DG 3 1_555 B DC 9 1_555 -0.777 -0.324 0.105 3.485 -4.366 -2.008 3 B_DG5:DC22_C B 5 ? C 22 ? 19 1 1 A DC 4 1_555 B DG 8 1_555 0.192 -0.247 0.533 -3.044 -7.903 -6.612 4 B_DC6:DG21_C B 6 ? C 21 ? 19 1 1 A DC 5 1_555 B DG 7 1_555 0.408 -0.314 0.553 0.809 -10.288 -3.302 5 B_DC7:DG20_C B 7 ? C 20 ? 19 1 1 A DG 6 1_555 B DC 6 1_555 -0.174 -0.152 0.228 5.644 -2.602 -3.343 6 B_DG8:DC19_C B 8 ? C 19 ? 19 1 1 A DC 7 1_555 B DG 5 1_555 0.319 -0.185 -0.087 -0.231 -2.275 -3.747 7 B_DC9:DG18_C B 9 ? C 18 ? 19 1 1 A DC 8 1_555 B DG 4 1_555 0.349 -0.187 0.314 -6.658 -6.688 -0.529 8 B_DC10:DG17_C B 10 ? C 17 ? 19 1 1 A DA 9 1_555 B DT 3 1_555 0.230 -0.230 0.627 3.906 -13.318 -6.134 9 B_DA11:DT16_C B 11 ? C 16 ? 20 1 1 A DG 10 1_555 B DC 2 1_555 -0.333 -0.405 1.091 7.256 -6.167 -3.997 10 B_DG12:DC15_C B 12 ? C 15 ? 19 1 1 A DC 11 1_555 B DG 1 1_555 0.904 -0.413 0.307 2.333 4.218 -1.197 11 B_DC13:DG14_C B 13 ? C 14 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 11 1_555 A DA 2 1_555 B DT 10 1_555 -0.107 0.284 3.376 0.136 -0.571 40.871 0.471 0.168 3.372 -0.817 -0.195 40.875 1 BB_DT3DA4:DT23DA24_CC B 3 ? C 24 ? B 4 ? C 23 ? 1 A DA 2 1_555 B DT 10 1_555 A DG 3 1_555 B DC 9 1_555 0.108 -0.194 3.009 -2.605 -4.303 27.682 0.532 -0.787 2.981 -8.901 5.389 28.127 2 BB_DA4DG5:DC22DT23_CC B 4 ? C 23 ? B 5 ? C 22 ? 1 A DG 3 1_555 B DC 9 1_555 A DC 4 1_555 B DG 8 1_555 -0.334 -0.093 3.278 -4.657 -0.980 42.296 -0.028 -0.014 3.297 -1.353 6.430 42.551 3 BB_DG5DC6:DG21DC22_CC B 5 ? C 22 ? B 6 ? C 21 ? 1 A DC 4 1_555 B DG 8 1_555 A DC 5 1_555 B DG 7 1_555 -0.289 -0.351 3.063 -3.752 -2.127 35.070 -0.282 -0.047 3.092 -3.513 6.198 35.326 4 BB_DC6DC7:DG20DG21_CC B 6 ? C 21 ? B 7 ? C 20 ? 1 A DC 5 1_555 B DG 7 1_555 A DG 6 1_555 B DC 6 1_555 0.058 -0.295 3.013 1.895 1.075 20.002 -1.300 0.637 2.985 3.082 -5.435 20.119 5 BB_DC7DG8:DC19DG20_CC B 7 ? C 20 ? B 8 ? C 19 ? 1 A DG 6 1_555 B DC 6 1_555 A DC 7 1_555 B DG 5 1_555 0.344 -0.505 3.338 3.869 2.056 38.644 -1.014 -0.037 3.326 3.094 -5.824 38.883 6 BB_DG8DC9:DG18DC19_CC B 8 ? C 19 ? B 9 ? C 18 ? 1 A DC 7 1_555 B DG 5 1_555 A DC 8 1_555 B DG 4 1_555 -0.200 -0.156 3.395 -1.720 -1.831 34.267 0.034 0.059 3.404 -3.102 2.914 34.356 7 BB_DC9DC10:DG17DG18_CC B 9 ? C 18 ? B 10 ? C 17 ? 1 A DC 8 1_555 B DG 4 1_555 A DA 9 1_555 B DT 3 1_555 -0.388 0.081 2.946 -2.509 -5.999 34.215 0.961 0.304 2.911 -10.083 4.216 34.809 8 BB_DC10DA11:DT16DG17_CC B 10 ? C 17 ? B 11 ? C 16 ? 1 A DA 9 1_555 B DT 3 1_555 A DG 10 1_555 B DC 2 1_555 0.395 -0.462 3.029 -4.358 -7.280 33.146 0.289 -1.315 2.986 -12.508 7.487 34.185 9 BB_DA11DG12:DC15DT16_CC B 11 ? C 16 ? B 12 ? C 15 ? 1 A DG 10 1_555 B DC 2 1_555 A DC 11 1_555 B DG 1 1_555 0.137 -0.345 3.556 3.951 -3.276 42.738 -0.116 0.240 3.570 -4.476 -5.398 43.031 10 BB_DG12DC13:DG14DC15_CC B 12 ? C 15 ? B 13 ? C 14 ? #