data_1GDT # _entry.id 1GDT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1GDT pdb_00001gdt 10.2210/pdb1gdt/pdb RCSB PDE0115 ? ? WWPDB D_1000173539 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-04-03 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1GDT _pdbx_database_status.recvd_initial_deposition_date 1995-04-11 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yang, W.' 1 'Steitz, T.A.' 2 # _citation.id primary _citation.title 'Crystal structure of the site-specific recombinase gamma delta resolvase complexed with a 34 bp cleavage site.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 82 _citation.page_first 193 _citation.page_last 207 _citation.year 1995 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 7628011 _citation.pdbx_database_id_DOI '10.1016/0092-8674(95)90307-0' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yang, W.' 1 ? primary 'Steitz, T.A.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'SITE I OF RES DNA' 6774.416 1 ? ? ? ? 2 polymer syn 'SITE I OF RES DNA' 3966.597 2 ? ? ? ? 3 polymer syn 'SITE I OF RES DNA' 6445.209 1 ? ? ? ? 4 polymer man 'PROTEIN (GAMMA DELTA RESOLVASE)' 20394.465 2 ? ? ? ? 5 water nat water 18.015 29 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'CROSSOVER SITE OR CLEAVAGE SITE' 2 'CROSSOVER SITE OR CLEAVAGE SITE' 3 'CROSSOVER SITE OR CLEAVAGE SITE' 4 'GD RESOLVASE' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DG)(DC)(DA)(DG)(DT)(DG)(DT)(DC)(DC)(DG)(DA)(DT)(DA)(DA)(DT)(DT)(DT)(DA)(DT)(DA) (DA)(DA) ; GCAGTGTCCGATAATTTATAAA C ? 2 polydeoxyribonucleotide no no '(DT)(DT)(DA)(DT)(DC)(DG)(DG)(DA)(DC)(DA)(DC)(DT)(DG)' TTATCGGACACTG D,F ? 3 polydeoxyribonucleotide no no ;(DC)(DA)(DG)(DT)(DG)(DT)(DC)(DC)(DG)(DA)(DT)(DA)(DA)(DT)(DT)(DT)(DA)(DT)(DA)(DA) (DA) ; CAGTGTCCGATAATTTATAAA E ? 4 'polypeptide(L)' no no ;MRLFGYARVSTSQQSLDIQVRALKDAGVKANRIFTDKASGSSSDRKGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLI KEFDAQGVSIRFIDDGISTDGEMGKMVVTILSAVAQAERQRILERTNEGRQEAMAKGVVFGRKRKIDRDAVLNMWQQGLG ASHISKTMNIARSTVYKVINESN ; ;MRLFGYARVSTSQQSLDIQVRALKDAGVKANRIFTDKASGSSSDRKGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLI KEFDAQGVSIRFIDDGISTDGEMGKMVVTILSAVAQAERQRILERTNEGRQEAMAKGVVFGRKRKIDRDAVLNMWQQGLG ASHISKTMNIARSTVYKVINESN ; A,B ? # _pdbx_entity_nonpoly.entity_id 5 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DA n 1 4 DG n 1 5 DT n 1 6 DG n 1 7 DT n 1 8 DC n 1 9 DC n 1 10 DG n 1 11 DA n 1 12 DT n 1 13 DA n 1 14 DA n 1 15 DT n 1 16 DT n 1 17 DT n 1 18 DA n 1 19 DT n 1 20 DA n 1 21 DA n 1 22 DA n 2 1 DT n 2 2 DT n 2 3 DA n 2 4 DT n 2 5 DC n 2 6 DG n 2 7 DG n 2 8 DA n 2 9 DC n 2 10 DA n 2 11 DC n 2 12 DT n 2 13 DG n 3 1 DC n 3 2 DA n 3 3 DG n 3 4 DT n 3 5 DG n 3 6 DT n 3 7 DC n 3 8 DC n 3 9 DG n 3 10 DA n 3 11 DT n 3 12 DA n 3 13 DA n 3 14 DT n 3 15 DT n 3 16 DT n 3 17 DA n 3 18 DT n 3 19 DA n 3 20 DA n 3 21 DA n 4 1 MET n 4 2 ARG n 4 3 LEU n 4 4 PHE n 4 5 GLY n 4 6 TYR n 4 7 ALA n 4 8 ARG n 4 9 VAL n 4 10 SER n 4 11 THR n 4 12 SER n 4 13 GLN n 4 14 GLN n 4 15 SER n 4 16 LEU n 4 17 ASP n 4 18 ILE n 4 19 GLN n 4 20 VAL n 4 21 ARG n 4 22 ALA n 4 23 LEU n 4 24 LYS n 4 25 ASP n 4 26 ALA n 4 27 GLY n 4 28 VAL n 4 29 LYS n 4 30 ALA n 4 31 ASN n 4 32 ARG n 4 33 ILE n 4 34 PHE n 4 35 THR n 4 36 ASP n 4 37 LYS n 4 38 ALA n 4 39 SER n 4 40 GLY n 4 41 SER n 4 42 SER n 4 43 SER n 4 44 ASP n 4 45 ARG n 4 46 LYS n 4 47 GLY n 4 48 LEU n 4 49 ASP n 4 50 LEU n 4 51 LEU n 4 52 ARG n 4 53 MET n 4 54 LYS n 4 55 VAL n 4 56 GLU n 4 57 GLU n 4 58 GLY n 4 59 ASP n 4 60 VAL n 4 61 ILE n 4 62 LEU n 4 63 VAL n 4 64 LYS n 4 65 LYS n 4 66 LEU n 4 67 ASP n 4 68 ARG n 4 69 LEU n 4 70 GLY n 4 71 ARG n 4 72 ASP n 4 73 THR n 4 74 ALA n 4 75 ASP n 4 76 MET n 4 77 ILE n 4 78 GLN n 4 79 LEU n 4 80 ILE n 4 81 LYS n 4 82 GLU n 4 83 PHE n 4 84 ASP n 4 85 ALA n 4 86 GLN n 4 87 GLY n 4 88 VAL n 4 89 SER n 4 90 ILE n 4 91 ARG n 4 92 PHE n 4 93 ILE n 4 94 ASP n 4 95 ASP n 4 96 GLY n 4 97 ILE n 4 98 SER n 4 99 THR n 4 100 ASP n 4 101 GLY n 4 102 GLU n 4 103 MET n 4 104 GLY n 4 105 LYS n 4 106 MET n 4 107 VAL n 4 108 VAL n 4 109 THR n 4 110 ILE n 4 111 LEU n 4 112 SER n 4 113 ALA n 4 114 VAL n 4 115 ALA n 4 116 GLN n 4 117 ALA n 4 118 GLU n 4 119 ARG n 4 120 GLN n 4 121 ARG n 4 122 ILE n 4 123 LEU n 4 124 GLU n 4 125 ARG n 4 126 THR n 4 127 ASN n 4 128 GLU n 4 129 GLY n 4 130 ARG n 4 131 GLN n 4 132 GLU n 4 133 ALA n 4 134 MET n 4 135 ALA n 4 136 LYS n 4 137 GLY n 4 138 VAL n 4 139 VAL n 4 140 PHE n 4 141 GLY n 4 142 ARG n 4 143 LYS n 4 144 ARG n 4 145 LYS n 4 146 ILE n 4 147 ASP n 4 148 ARG n 4 149 ASP n 4 150 ALA n 4 151 VAL n 4 152 LEU n 4 153 ASN n 4 154 MET n 4 155 TRP n 4 156 GLN n 4 157 GLN n 4 158 GLY n 4 159 LEU n 4 160 GLY n 4 161 ALA n 4 162 SER n 4 163 HIS n 4 164 ILE n 4 165 SER n 4 166 LYS n 4 167 THR n 4 168 MET n 4 169 ASN n 4 170 ILE n 4 171 ALA n 4 172 ARG n 4 173 SER n 4 174 THR n 4 175 VAL n 4 176 TYR n 4 177 LYS n 4 178 VAL n 4 179 ILE n 4 180 ASN n 4 181 GLU n 4 182 SER n 4 183 ASN n # _entity_src_gen.entity_id 4 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene TNPR _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'STRAINS THAT CONTAIN F EPISOME' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene TNPR _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain AR120 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name MGH285 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G C . n A 1 2 DC 2 2 2 DC C C . n A 1 3 DA 3 3 3 DA A C . n A 1 4 DG 4 4 4 DG G C . n A 1 5 DT 5 5 5 DT T C . n A 1 6 DG 6 6 6 DG G C . n A 1 7 DT 7 7 7 DT T C . n A 1 8 DC 8 8 8 DC C C . n A 1 9 DC 9 9 9 DC C C . n A 1 10 DG 10 10 10 DG G C . n A 1 11 DA 11 11 11 DA A C . n A 1 12 DT 12 12 12 DT T C . n A 1 13 DA 13 13 13 DA A C . n A 1 14 DA 14 14 14 DA A C . n A 1 15 DT 15 15 15 DT T C . n A 1 16 DT 16 16 16 DT T C . n A 1 17 DT 17 17 17 DT T C . n A 1 18 DA 18 18 18 DA A C . n A 1 19 DT 19 19 19 DT T C . n A 1 20 DA 20 20 20 DA A C . n A 1 21 DA 21 21 21 DA A C . n A 1 22 DA 22 22 22 DA A C . n B 2 1 DT 1 23 23 DT T D . n B 2 2 DT 2 24 24 DT T D . n B 2 3 DA 3 25 25 DA A D . n B 2 4 DT 4 26 26 DT T D . n B 2 5 DC 5 27 27 DC C D . n B 2 6 DG 6 28 28 DG G D . n B 2 7 DG 7 29 29 DG G D . n B 2 8 DA 8 30 30 DA A D . n B 2 9 DC 9 31 31 DC C D . n B 2 10 DA 10 32 32 DA A D . n B 2 11 DC 11 33 33 DC C D . n B 2 12 DT 12 34 34 DT T D . n B 2 13 DG 13 35 35 DG G D . n C 3 1 DC 1 2 2 DC C E . n C 3 2 DA 2 3 3 DA A E . n C 3 3 DG 3 4 4 DG G E . n C 3 4 DT 4 5 5 DT T E . n C 3 5 DG 5 6 6 DG G E . n C 3 6 DT 6 7 7 DT T E . n C 3 7 DC 7 8 8 DC C E . n C 3 8 DC 8 9 9 DC C E . n C 3 9 DG 9 10 10 DG G E . n C 3 10 DA 10 11 11 DA A E . n C 3 11 DT 11 12 12 DT T E . n C 3 12 DA 12 13 13 DA A E . n C 3 13 DA 13 14 14 DA A E . n C 3 14 DT 14 15 15 DT T E . n C 3 15 DT 15 16 16 DT T E . n C 3 16 DT 16 17 17 DT T E . n C 3 17 DA 17 18 18 DA A E . n C 3 18 DT 18 19 19 DT T E . n C 3 19 DA 19 20 20 DA A E . n C 3 20 DA 20 21 21 DA A E . n C 3 21 DA 21 22 22 DA A E . n D 2 1 DT 1 23 23 DT T F . n D 2 2 DT 2 24 24 DT T F . n D 2 3 DA 3 25 25 DA A F . n D 2 4 DT 4 26 26 DT T F . n D 2 5 DC 5 27 27 DC C F . n D 2 6 DG 6 28 28 DG G F . n D 2 7 DG 7 29 29 DG G F . n D 2 8 DA 8 30 30 DA A F . n D 2 9 DC 9 31 31 DC C F . n D 2 10 DA 10 32 32 DA A F . n D 2 11 DC 11 33 33 DC C F . n D 2 12 DT 12 34 34 DT T F . n D 2 13 DG 13 35 35 DG G F . n E 4 1 MET 1 1 1 MET MET A . n E 4 2 ARG 2 2 2 ARG ARG A . n E 4 3 LEU 3 3 3 LEU LEU A . n E 4 4 PHE 4 4 4 PHE PHE A . n E 4 5 GLY 5 5 5 GLY GLY A . n E 4 6 TYR 6 6 6 TYR TYR A . n E 4 7 ALA 7 7 7 ALA ALA A . n E 4 8 ARG 8 8 8 ARG ARG A . n E 4 9 VAL 9 9 9 VAL VAL A . n E 4 10 SER 10 10 10 SER SER A . n E 4 11 THR 11 11 11 THR THR A . n E 4 12 SER 12 12 12 SER SER A . n E 4 13 GLN 13 13 13 GLN GLN A . n E 4 14 GLN 14 14 14 GLN GLN A . n E 4 15 SER 15 15 15 SER SER A . n E 4 16 LEU 16 16 16 LEU LEU A . n E 4 17 ASP 17 17 17 ASP ASP A . n E 4 18 ILE 18 18 18 ILE ILE A . n E 4 19 GLN 19 19 19 GLN GLN A . n E 4 20 VAL 20 20 20 VAL VAL A . n E 4 21 ARG 21 21 21 ARG ARG A . n E 4 22 ALA 22 22 22 ALA ALA A . n E 4 23 LEU 23 23 23 LEU LEU A . n E 4 24 LYS 24 24 24 LYS LYS A . n E 4 25 ASP 25 25 25 ASP ASP A . n E 4 26 ALA 26 26 26 ALA ALA A . n E 4 27 GLY 27 27 27 GLY GLY A . n E 4 28 VAL 28 28 28 VAL VAL A . n E 4 29 LYS 29 29 29 LYS LYS A . n E 4 30 ALA 30 30 30 ALA ALA A . n E 4 31 ASN 31 31 31 ASN ASN A . n E 4 32 ARG 32 32 32 ARG ARG A . n E 4 33 ILE 33 33 33 ILE ILE A . n E 4 34 PHE 34 34 34 PHE PHE A . n E 4 35 THR 35 35 35 THR THR A . n E 4 36 ASP 36 36 36 ASP ASP A . n E 4 37 LYS 37 37 37 LYS LYS A . n E 4 38 ALA 38 38 38 ALA ALA A . n E 4 39 SER 39 39 39 SER SER A . n E 4 40 GLY 40 40 40 GLY GLY A . n E 4 41 SER 41 41 41 SER SER A . n E 4 42 SER 42 42 42 SER SER A . n E 4 43 SER 43 43 43 SER SER A . n E 4 44 ASP 44 44 44 ASP ASP A . n E 4 45 ARG 45 45 45 ARG ARG A . n E 4 46 LYS 46 46 46 LYS LYS A . n E 4 47 GLY 47 47 47 GLY GLY A . n E 4 48 LEU 48 48 48 LEU LEU A . n E 4 49 ASP 49 49 49 ASP ASP A . n E 4 50 LEU 50 50 50 LEU LEU A . n E 4 51 LEU 51 51 51 LEU LEU A . n E 4 52 ARG 52 52 52 ARG ARG A . n E 4 53 MET 53 53 53 MET MET A . n E 4 54 LYS 54 54 54 LYS LYS A . n E 4 55 VAL 55 55 55 VAL VAL A . n E 4 56 GLU 56 56 56 GLU GLU A . n E 4 57 GLU 57 57 57 GLU GLU A . n E 4 58 GLY 58 58 58 GLY GLY A . n E 4 59 ASP 59 59 59 ASP ASP A . n E 4 60 VAL 60 60 60 VAL VAL A . n E 4 61 ILE 61 61 61 ILE ILE A . n E 4 62 LEU 62 62 62 LEU LEU A . n E 4 63 VAL 63 63 63 VAL VAL A . n E 4 64 LYS 64 64 64 LYS LYS A . n E 4 65 LYS 65 65 65 LYS LYS A . n E 4 66 LEU 66 66 66 LEU LEU A . n E 4 67 ASP 67 67 67 ASP ASP A . n E 4 68 ARG 68 68 68 ARG ARG A . n E 4 69 LEU 69 69 69 LEU LEU A . n E 4 70 GLY 70 70 70 GLY GLY A . n E 4 71 ARG 71 71 71 ARG ARG A . n E 4 72 ASP 72 72 72 ASP ASP A . n E 4 73 THR 73 73 73 THR THR A . n E 4 74 ALA 74 74 74 ALA ALA A . n E 4 75 ASP 75 75 75 ASP ASP A . n E 4 76 MET 76 76 76 MET MET A . n E 4 77 ILE 77 77 77 ILE ILE A . n E 4 78 GLN 78 78 78 GLN GLN A . n E 4 79 LEU 79 79 79 LEU LEU A . n E 4 80 ILE 80 80 80 ILE ILE A . n E 4 81 LYS 81 81 81 LYS LYS A . n E 4 82 GLU 82 82 82 GLU GLU A . n E 4 83 PHE 83 83 83 PHE PHE A . n E 4 84 ASP 84 84 84 ASP ASP A . n E 4 85 ALA 85 85 85 ALA ALA A . n E 4 86 GLN 86 86 86 GLN GLN A . n E 4 87 GLY 87 87 87 GLY GLY A . n E 4 88 VAL 88 88 88 VAL VAL A . n E 4 89 SER 89 89 89 SER SER A . n E 4 90 ILE 90 90 90 ILE ILE A . n E 4 91 ARG 91 91 91 ARG ARG A . n E 4 92 PHE 92 92 92 PHE PHE A . n E 4 93 ILE 93 93 93 ILE ILE A . n E 4 94 ASP 94 94 94 ASP ASP A . n E 4 95 ASP 95 95 95 ASP ASP A . n E 4 96 GLY 96 96 96 GLY GLY A . n E 4 97 ILE 97 97 97 ILE ILE A . n E 4 98 SER 98 98 98 SER SER A . n E 4 99 THR 99 99 99 THR THR A . n E 4 100 ASP 100 100 100 ASP ASP A . n E 4 101 GLY 101 101 101 GLY GLY A . n E 4 102 GLU 102 102 102 GLU GLU A . n E 4 103 MET 103 103 103 MET MET A . n E 4 104 GLY 104 104 104 GLY GLY A . n E 4 105 LYS 105 105 105 LYS LYS A . n E 4 106 MET 106 106 106 MET MET A . n E 4 107 VAL 107 107 107 VAL VAL A . n E 4 108 VAL 108 108 108 VAL VAL A . n E 4 109 THR 109 109 109 THR THR A . n E 4 110 ILE 110 110 110 ILE ILE A . n E 4 111 LEU 111 111 111 LEU LEU A . n E 4 112 SER 112 112 112 SER SER A . n E 4 113 ALA 113 113 113 ALA ALA A . n E 4 114 VAL 114 114 114 VAL VAL A . n E 4 115 ALA 115 115 115 ALA ALA A . n E 4 116 GLN 116 116 116 GLN GLN A . n E 4 117 ALA 117 117 117 ALA ALA A . n E 4 118 GLU 118 118 118 GLU GLU A . n E 4 119 ARG 119 119 119 ARG ARG A . n E 4 120 GLN 120 120 120 GLN GLN A . n E 4 121 ARG 121 121 121 ARG ARG A . n E 4 122 ILE 122 122 122 ILE ILE A . n E 4 123 LEU 123 123 123 LEU LEU A . n E 4 124 GLU 124 124 124 GLU GLU A . n E 4 125 ARG 125 125 125 ARG ARG A . n E 4 126 THR 126 126 126 THR THR A . n E 4 127 ASN 127 127 127 ASN ASN A . n E 4 128 GLU 128 128 128 GLU GLU A . n E 4 129 GLY 129 129 129 GLY GLY A . n E 4 130 ARG 130 130 130 ARG ARG A . n E 4 131 GLN 131 131 131 GLN GLN A . n E 4 132 GLU 132 132 132 GLU GLU A . n E 4 133 ALA 133 133 133 ALA ALA A . n E 4 134 MET 134 134 134 MET MET A . n E 4 135 ALA 135 135 135 ALA ALA A . n E 4 136 LYS 136 136 136 LYS LYS A . n E 4 137 GLY 137 137 137 GLY GLY A . n E 4 138 VAL 138 138 138 VAL VAL A . n E 4 139 VAL 139 139 139 VAL VAL A . n E 4 140 PHE 140 140 140 PHE PHE A . n E 4 141 GLY 141 141 141 GLY GLY A . n E 4 142 ARG 142 142 142 ARG ARG A . n E 4 143 LYS 143 143 143 LYS LYS A . n E 4 144 ARG 144 144 144 ARG ARG A . n E 4 145 LYS 145 145 145 LYS LYS A . n E 4 146 ILE 146 146 146 ILE ILE A . n E 4 147 ASP 147 147 147 ASP ASP A . n E 4 148 ARG 148 148 148 ARG ARG A . n E 4 149 ASP 149 149 149 ASP ASP A . n E 4 150 ALA 150 150 150 ALA ALA A . n E 4 151 VAL 151 151 151 VAL VAL A . n E 4 152 LEU 152 152 152 LEU LEU A . n E 4 153 ASN 153 153 153 ASN ASN A . n E 4 154 MET 154 154 154 MET MET A . n E 4 155 TRP 155 155 155 TRP TRP A . n E 4 156 GLN 156 156 156 GLN GLN A . n E 4 157 GLN 157 157 157 GLN GLN A . n E 4 158 GLY 158 158 158 GLY GLY A . n E 4 159 LEU 159 159 159 LEU LEU A . n E 4 160 GLY 160 160 160 GLY GLY A . n E 4 161 ALA 161 161 161 ALA ALA A . n E 4 162 SER 162 162 162 SER SER A . n E 4 163 HIS 163 163 163 HIS HIS A . n E 4 164 ILE 164 164 164 ILE ILE A . n E 4 165 SER 165 165 165 SER SER A . n E 4 166 LYS 166 166 166 LYS LYS A . n E 4 167 THR 167 167 167 THR THR A . n E 4 168 MET 168 168 168 MET MET A . n E 4 169 ASN 169 169 169 ASN ASN A . n E 4 170 ILE 170 170 170 ILE ILE A . n E 4 171 ALA 171 171 171 ALA ALA A . n E 4 172 ARG 172 172 172 ARG ARG A . n E 4 173 SER 173 173 173 SER SER A . n E 4 174 THR 174 174 174 THR THR A . n E 4 175 VAL 175 175 175 VAL VAL A . n E 4 176 TYR 176 176 176 TYR TYR A . n E 4 177 LYS 177 177 177 LYS LYS A . n E 4 178 VAL 178 178 178 VAL VAL A . n E 4 179 ILE 179 179 179 ILE ILE A . n E 4 180 ASN 180 180 180 ASN ASN A . n E 4 181 GLU 181 181 181 GLU GLU A . n E 4 182 SER 182 182 182 SER SER A . n E 4 183 ASN 183 183 183 ASN ASN A . n F 4 1 MET 1 1 1 MET MET B . n F 4 2 ARG 2 2 2 ARG ARG B . n F 4 3 LEU 3 3 3 LEU LEU B . n F 4 4 PHE 4 4 4 PHE PHE B . n F 4 5 GLY 5 5 5 GLY GLY B . n F 4 6 TYR 6 6 6 TYR TYR B . n F 4 7 ALA 7 7 7 ALA ALA B . n F 4 8 ARG 8 8 8 ARG ARG B . n F 4 9 VAL 9 9 9 VAL VAL B . n F 4 10 SER 10 10 10 SER SER B . n F 4 11 THR 11 11 11 THR THR B . n F 4 12 SER 12 12 12 SER SER B . n F 4 13 GLN 13 13 13 GLN GLN B . n F 4 14 GLN 14 14 14 GLN GLN B . n F 4 15 SER 15 15 15 SER SER B . n F 4 16 LEU 16 16 16 LEU LEU B . n F 4 17 ASP 17 17 17 ASP ASP B . n F 4 18 ILE 18 18 18 ILE ILE B . n F 4 19 GLN 19 19 19 GLN GLN B . n F 4 20 VAL 20 20 20 VAL VAL B . n F 4 21 ARG 21 21 21 ARG ARG B . n F 4 22 ALA 22 22 22 ALA ALA B . n F 4 23 LEU 23 23 23 LEU LEU B . n F 4 24 LYS 24 24 24 LYS LYS B . n F 4 25 ASP 25 25 25 ASP ASP B . n F 4 26 ALA 26 26 26 ALA ALA B . n F 4 27 GLY 27 27 27 GLY GLY B . n F 4 28 VAL 28 28 28 VAL VAL B . n F 4 29 LYS 29 29 29 LYS LYS B . n F 4 30 ALA 30 30 30 ALA ALA B . n F 4 31 ASN 31 31 31 ASN ASN B . n F 4 32 ARG 32 32 32 ARG ARG B . n F 4 33 ILE 33 33 33 ILE ILE B . n F 4 34 PHE 34 34 34 PHE PHE B . n F 4 35 THR 35 35 35 THR THR B . n F 4 36 ASP 36 36 36 ASP ASP B . n F 4 37 LYS 37 37 37 LYS LYS B . n F 4 38 ALA 38 38 38 ALA ALA B . n F 4 39 SER 39 39 39 SER SER B . n F 4 40 GLY 40 40 40 GLY GLY B . n F 4 41 SER 41 41 41 SER SER B . n F 4 42 SER 42 42 42 SER SER B . n F 4 43 SER 43 43 43 SER SER B . n F 4 44 ASP 44 44 44 ASP ASP B . n F 4 45 ARG 45 45 45 ARG ARG B . n F 4 46 LYS 46 46 46 LYS LYS B . n F 4 47 GLY 47 47 47 GLY GLY B . n F 4 48 LEU 48 48 48 LEU LEU B . n F 4 49 ASP 49 49 49 ASP ASP B . n F 4 50 LEU 50 50 50 LEU LEU B . n F 4 51 LEU 51 51 51 LEU LEU B . n F 4 52 ARG 52 52 52 ARG ARG B . n F 4 53 MET 53 53 53 MET MET B . n F 4 54 LYS 54 54 54 LYS LYS B . n F 4 55 VAL 55 55 55 VAL VAL B . n F 4 56 GLU 56 56 56 GLU GLU B . n F 4 57 GLU 57 57 57 GLU GLU B . n F 4 58 GLY 58 58 58 GLY GLY B . n F 4 59 ASP 59 59 59 ASP ASP B . n F 4 60 VAL 60 60 60 VAL VAL B . n F 4 61 ILE 61 61 61 ILE ILE B . n F 4 62 LEU 62 62 62 LEU LEU B . n F 4 63 VAL 63 63 63 VAL VAL B . n F 4 64 LYS 64 64 64 LYS LYS B . n F 4 65 LYS 65 65 65 LYS LYS B . n F 4 66 LEU 66 66 66 LEU LEU B . n F 4 67 ASP 67 67 67 ASP ASP B . n F 4 68 ARG 68 68 68 ARG ARG B . n F 4 69 LEU 69 69 69 LEU LEU B . n F 4 70 GLY 70 70 70 GLY GLY B . n F 4 71 ARG 71 71 71 ARG ARG B . n F 4 72 ASP 72 72 72 ASP ASP B . n F 4 73 THR 73 73 73 THR THR B . n F 4 74 ALA 74 74 74 ALA ALA B . n F 4 75 ASP 75 75 75 ASP ASP B . n F 4 76 MET 76 76 76 MET MET B . n F 4 77 ILE 77 77 77 ILE ILE B . n F 4 78 GLN 78 78 78 GLN GLN B . n F 4 79 LEU 79 79 79 LEU LEU B . n F 4 80 ILE 80 80 80 ILE ILE B . n F 4 81 LYS 81 81 81 LYS LYS B . n F 4 82 GLU 82 82 82 GLU GLU B . n F 4 83 PHE 83 83 83 PHE PHE B . n F 4 84 ASP 84 84 84 ASP ASP B . n F 4 85 ALA 85 85 85 ALA ALA B . n F 4 86 GLN 86 86 86 GLN GLN B . n F 4 87 GLY 87 87 87 GLY GLY B . n F 4 88 VAL 88 88 88 VAL VAL B . n F 4 89 SER 89 89 89 SER SER B . n F 4 90 ILE 90 90 90 ILE ILE B . n F 4 91 ARG 91 91 91 ARG ARG B . n F 4 92 PHE 92 92 92 PHE PHE B . n F 4 93 ILE 93 93 93 ILE ILE B . n F 4 94 ASP 94 94 94 ASP ASP B . n F 4 95 ASP 95 95 95 ASP ASP B . n F 4 96 GLY 96 96 96 GLY GLY B . n F 4 97 ILE 97 97 97 ILE ILE B . n F 4 98 SER 98 98 98 SER SER B . n F 4 99 THR 99 99 99 THR THR B . n F 4 100 ASP 100 100 100 ASP ASP B . n F 4 101 GLY 101 101 101 GLY GLY B . n F 4 102 GLU 102 102 102 GLU GLU B . n F 4 103 MET 103 103 103 MET MET B . n F 4 104 GLY 104 104 104 GLY GLY B . n F 4 105 LYS 105 105 105 LYS LYS B . n F 4 106 MET 106 106 106 MET MET B . n F 4 107 VAL 107 107 107 VAL VAL B . n F 4 108 VAL 108 108 108 VAL VAL B . n F 4 109 THR 109 109 109 THR THR B . n F 4 110 ILE 110 110 110 ILE ILE B . n F 4 111 LEU 111 111 111 LEU LEU B . n F 4 112 SER 112 112 112 SER SER B . n F 4 113 ALA 113 113 113 ALA ALA B . n F 4 114 VAL 114 114 114 VAL VAL B . n F 4 115 ALA 115 115 115 ALA ALA B . n F 4 116 GLN 116 116 116 GLN GLN B . n F 4 117 ALA 117 117 117 ALA ALA B . n F 4 118 GLU 118 118 118 GLU GLU B . n F 4 119 ARG 119 119 119 ARG ARG B . n F 4 120 GLN 120 120 120 GLN GLN B . n F 4 121 ARG 121 121 121 ARG ARG B . n F 4 122 ILE 122 122 122 ILE ILE B . n F 4 123 LEU 123 123 123 LEU LEU B . n F 4 124 GLU 124 124 124 GLU GLU B . n F 4 125 ARG 125 125 125 ARG ARG B . n F 4 126 THR 126 126 126 THR THR B . n F 4 127 ASN 127 127 127 ASN ASN B . n F 4 128 GLU 128 128 128 GLU GLU B . n F 4 129 GLY 129 129 129 GLY GLY B . n F 4 130 ARG 130 130 130 ARG ARG B . n F 4 131 GLN 131 131 131 GLN GLN B . n F 4 132 GLU 132 132 132 GLU GLU B . n F 4 133 ALA 133 133 133 ALA ALA B . n F 4 134 MET 134 134 134 MET MET B . n F 4 135 ALA 135 135 135 ALA ALA B . n F 4 136 LYS 136 136 136 LYS LYS B . n F 4 137 GLY 137 137 137 GLY GLY B . n F 4 138 VAL 138 138 138 VAL VAL B . n F 4 139 VAL 139 139 139 VAL VAL B . n F 4 140 PHE 140 140 140 PHE PHE B . n F 4 141 GLY 141 141 141 GLY GLY B . n F 4 142 ARG 142 142 142 ARG ARG B . n F 4 143 LYS 143 143 143 LYS LYS B . n F 4 144 ARG 144 144 144 ARG ARG B . n F 4 145 LYS 145 145 145 LYS LYS B . n F 4 146 ILE 146 146 146 ILE ILE B . n F 4 147 ASP 147 147 147 ASP ASP B . n F 4 148 ARG 148 148 148 ARG ARG B . n F 4 149 ASP 149 149 149 ASP ASP B . n F 4 150 ALA 150 150 150 ALA ALA B . n F 4 151 VAL 151 151 151 VAL VAL B . n F 4 152 LEU 152 152 152 LEU LEU B . n F 4 153 ASN 153 153 153 ASN ASN B . n F 4 154 MET 154 154 154 MET MET B . n F 4 155 TRP 155 155 155 TRP TRP B . n F 4 156 GLN 156 156 156 GLN GLN B . n F 4 157 GLN 157 157 157 GLN GLN B . n F 4 158 GLY 158 158 158 GLY GLY B . n F 4 159 LEU 159 159 159 LEU LEU B . n F 4 160 GLY 160 160 160 GLY GLY B . n F 4 161 ALA 161 161 161 ALA ALA B . n F 4 162 SER 162 162 162 SER SER B . n F 4 163 HIS 163 163 163 HIS HIS B . n F 4 164 ILE 164 164 164 ILE ILE B . n F 4 165 SER 165 165 165 SER SER B . n F 4 166 LYS 166 166 166 LYS LYS B . n F 4 167 THR 167 167 167 THR THR B . n F 4 168 MET 168 168 168 MET MET B . n F 4 169 ASN 169 169 169 ASN ASN B . n F 4 170 ILE 170 170 170 ILE ILE B . n F 4 171 ALA 171 171 171 ALA ALA B . n F 4 172 ARG 172 172 172 ARG ARG B . n F 4 173 SER 173 173 173 SER SER B . n F 4 174 THR 174 174 174 THR THR B . n F 4 175 VAL 175 175 175 VAL VAL B . n F 4 176 TYR 176 176 176 TYR TYR B . n F 4 177 LYS 177 177 177 LYS LYS B . n F 4 178 VAL 178 178 178 VAL VAL B . n F 4 179 ILE 179 179 179 ILE ILE B . n F 4 180 ASN 180 180 180 ASN ASN B . n F 4 181 GLU 181 181 181 GLU GLU B . n F 4 182 SER 182 182 182 SER SER B . n F 4 183 ASN 183 183 183 ASN ASN B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 HOH 1 613 613 HOH HOH C . G 5 HOH 2 622 622 HOH HOH C . G 5 HOH 3 626 626 HOH HOH C . G 5 HOH 4 635 635 HOH HOH C . H 5 HOH 1 608 608 HOH HOH E . H 5 HOH 2 631 631 HOH HOH E . I 5 HOH 1 624 624 HOH HOH F . I 5 HOH 2 636 636 HOH HOH F . J 5 HOH 1 601 601 HOH HOH A . J 5 HOH 2 602 602 HOH HOH A . J 5 HOH 3 603 603 HOH HOH A . J 5 HOH 4 604 604 HOH HOH A . J 5 HOH 5 605 605 HOH HOH A . J 5 HOH 6 606 606 HOH HOH A . J 5 HOH 7 609 609 HOH HOH A . J 5 HOH 8 610 610 HOH HOH A . J 5 HOH 9 644 644 HOH HOH A . K 5 HOH 1 607 607 HOH HOH B . K 5 HOH 2 615 615 HOH HOH B . K 5 HOH 3 625 625 HOH HOH B . K 5 HOH 4 641 641 HOH HOH B . K 5 HOH 5 642 642 HOH HOH B . K 5 HOH 6 646 646 HOH HOH B . K 5 HOH 7 647 647 HOH HOH B . K 5 HOH 8 648 648 HOH HOH B . K 5 HOH 9 650 650 HOH HOH B . K 5 HOH 10 651 651 HOH HOH B . K 5 HOH 11 656 656 HOH HOH B . K 5 HOH 12 658 658 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR refinement 3.1 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 # _cell.entry_id 1GDT _cell.length_a 113.000 _cell.length_b 157.000 _cell.length_c 37.200 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GDT _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1GDT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.64 _exptl_crystal.density_percent_sol 54.0000 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp 113.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 1994-04-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _reflns.entry_id 1GDT _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 3.000 _reflns.number_obs 13255 _reflns.number_all ? _reflns.percent_possible_obs 94.200 _reflns.pdbx_Rmerge_I_obs 0.0770000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1GDT _refine.ls_number_reflns_obs 12130 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 3.000 _refine.ls_percent_reflns_obs 89.500 _refine.ls_R_factor_obs 0.2350000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2350000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 26.69 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1GDT _refine_analyze.Luzzati_coordinate_error_obs 0.40 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2848 _refine_hist.pdbx_number_atoms_nucleic_acid 1407 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 29 _refine_hist.number_atoms_total 4284 _refine_hist.d_res_high 3.000 _refine_hist.d_res_low 10.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.25 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 33.4 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.00 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 1.000 ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 1.500 ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 1.500 ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 2.000 ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1GDT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1GDT _struct.title 'CRYSTAL STRUCTURE OF A SITE-SPECIFIC RECOMBINASE, GAMMA-DELTA RESOLVASE COMPLEXED WITH A 34 BP CLEAVAGE SITE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1GDT _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text 'PROTEIN-DNA COMPLEX, DOUBLE HELIX, OVERHANGING BASE, DNA BINDING PROTEIN-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 2 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP TNR1_ECOLI P03012 4 1 ? ? 2 PDB 1GDT 1GDT 1 ? ? ? 3 PDB 1GDT 1GDT 2 ? ? ? 4 PDB 1GDT 1GDT 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1GDT A 1 ? 183 ? P03012 1 ? 183 ? 1 183 2 1 1GDT B 1 ? 183 ? P03012 1 ? 183 ? 1 183 3 2 1GDT C 1 ? 22 ? 1GDT 1 ? 22 ? 1 22 4 3 1GDT D 1 ? 13 ? 1GDT 23 ? 35 ? 23 35 5 4 1GDT E 1 ? 21 ? 1GDT 2 ? 22 ? 2 22 6 3 1GDT F 1 ? 13 ? 1GDT 23 ? 35 ? 23 35 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN E 13 ? ALA E 26 ? GLN A 13 ALA A 26 1 ? 14 HELX_P HELX_P2 2 LYS E 46 ? LYS E 54 ? LYS A 46 LYS A 54 1 ? 9 HELX_P HELX_P3 3 LEU E 66 ? ARG E 68 ? LEU A 66 ARG A 68 5 ? 3 HELX_P HELX_P4 4 THR E 73 ? ALA E 85 ? THR A 73 ALA A 85 1 ? 13 HELX_P HELX_P5 5 ILE E 93 ? ASP E 95 ? ILE A 93 ASP A 95 5 ? 3 HELX_P HELX_P6 6 GLU E 102 ? LYS E 136 ? GLU A 102 LYS A 136 1 ? 35 HELX_P HELX_P7 7 ARG E 148 ? GLN E 156 ? ARG A 148 GLN A 156 1 ? 9 HELX_P HELX_P8 8 ALA E 161 ? MET E 168 ? ALA A 161 MET A 168 1 ? 8 HELX_P HELX_P9 9 ARG E 172 ? ASN E 180 ? ARG A 172 ASN A 180 1 ? 9 HELX_P HELX_P10 10 GLN F 13 ? LYS F 24 ? GLN B 13 LYS B 24 1 ? 12 HELX_P HELX_P11 11 LYS F 46 ? LYS F 54 ? LYS B 46 LYS B 54 1 ? 9 HELX_P HELX_P12 12 LEU F 66 ? ARG F 68 ? LEU B 66 ARG B 68 5 ? 3 HELX_P HELX_P13 13 THR F 73 ? GLN F 86 ? THR B 73 GLN B 86 1 ? 14 HELX_P HELX_P14 14 GLY F 104 ? ALA F 135 ? GLY B 104 ALA B 135 1 ? 32 HELX_P HELX_P15 15 ARG F 148 ? GLN F 156 ? ARG B 148 GLN B 156 1 ? 9 HELX_P HELX_P16 16 ALA F 161 ? MET F 168 ? ALA B 161 MET B 168 1 ? 8 HELX_P HELX_P17 17 ARG F 172 ? GLU F 181 ? ARG B 172 GLU B 181 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 D DG 13 N1 ? ? C DC 2 F DG 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 D DG 13 O6 ? ? C DC 2 F DG 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 D DG 13 N2 ? ? C DC 2 F DG 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 3 N1 ? ? ? 1_555 D DT 12 N3 ? ? C DA 3 F DT 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 3 N6 ? ? ? 1_555 D DT 12 O4 ? ? C DA 3 F DT 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 4 N1 ? ? ? 1_555 D DC 11 O2 ? ? C DG 4 F DC 33 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog7 hydrog ? ? A DT 5 N3 ? ? ? 1_555 D DA 10 N1 ? ? C DT 5 F DA 32 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog8 hydrog ? ? A DG 6 N1 ? ? ? 1_555 D DC 9 N3 ? ? C DG 6 F DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 6 N2 ? ? ? 1_555 D DC 9 O2 ? ? C DG 6 F DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 6 O6 ? ? ? 1_555 D DC 9 N4 ? ? C DG 6 F DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 7 N3 ? ? ? 1_555 D DA 8 N1 ? ? C DT 7 F DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 7 O4 ? ? ? 1_555 D DA 8 N6 ? ? C DT 7 F DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 8 N3 ? ? ? 1_555 D DG 7 N1 ? ? C DC 8 F DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 8 N4 ? ? ? 1_555 D DG 7 O6 ? ? C DC 8 F DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 8 O2 ? ? ? 1_555 D DG 7 N2 ? ? C DC 8 F DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 9 N3 ? ? ? 1_555 D DG 6 N1 ? ? C DC 9 F DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 9 N4 ? ? ? 1_555 D DG 6 O6 ? ? C DC 9 F DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 9 O2 ? ? ? 1_555 D DG 6 N2 ? ? C DC 9 F DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 10 N1 ? ? ? 1_555 D DC 5 N3 ? ? C DG 10 F DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 10 N2 ? ? ? 1_555 D DC 5 O2 ? ? C DG 10 F DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 10 O6 ? ? ? 1_555 D DC 5 N4 ? ? C DG 10 F DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 11 N1 ? ? ? 1_555 D DT 4 N3 ? ? C DA 11 F DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 11 N6 ? ? ? 1_555 D DT 4 O4 ? ? C DA 11 F DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 12 N3 ? ? ? 1_555 D DA 3 N1 ? ? C DT 12 F DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 12 O4 ? ? ? 1_555 D DA 3 N6 ? ? C DT 12 F DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 14 N1 ? ? ? 1_555 D DT 1 N3 ? ? C DA 14 F DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DA 14 N6 ? ? ? 1_555 D DT 1 O4 ? ? C DA 14 F DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 15 N3 ? ? ? 1_555 C DA 21 N1 ? ? C DT 15 E DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 15 O4 ? ? ? 1_555 C DA 21 N6 ? ? C DT 15 E DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 16 N3 ? ? ? 1_555 C DA 20 N1 ? ? C DT 16 E DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 16 O4 ? ? ? 1_555 C DA 20 N6 ? ? C DT 16 E DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DT 17 N3 ? ? ? 1_555 C DA 19 N1 ? ? C DT 17 E DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DT 17 O4 ? ? ? 1_555 C DA 19 N6 ? ? C DT 17 E DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DA 18 N1 ? ? ? 1_555 C DT 18 N3 ? ? C DA 18 E DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DA 18 N6 ? ? ? 1_555 C DT 18 O4 ? ? C DA 18 E DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DT 19 N3 ? ? ? 1_555 C DA 17 N1 ? ? C DT 19 E DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DT 19 O4 ? ? ? 1_555 C DA 17 N6 ? ? C DT 19 E DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DA 20 N1 ? ? ? 1_555 C DT 16 N3 ? ? C DA 20 E DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DA 20 N6 ? ? ? 1_555 C DT 16 O4 ? ? C DA 20 E DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DA 21 N1 ? ? ? 1_555 C DT 15 N3 ? ? C DA 21 E DT 16 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog41 hydrog ? ? A DA 21 N1 ? ? ? 1_555 C DT 16 N3 ? ? C DA 21 E DT 17 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog42 hydrog ? ? B DT 1 N3 ? ? ? 1_555 C DA 13 N1 ? ? D DT 23 E DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B DT 1 O4 ? ? ? 1_555 C DA 13 N6 ? ? D DT 23 E DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B DT 2 N3 ? ? ? 1_555 C DA 12 N1 ? ? D DT 24 E DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B DT 2 O4 ? ? ? 1_555 C DA 12 N6 ? ? D DT 24 E DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B DT 2 N3 ? ? ? 1_555 C DA 13 N1 ? ? D DT 24 E DA 14 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog47 hydrog ? ? B DA 3 N1 ? ? ? 1_555 C DT 11 N3 ? ? D DA 25 E DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B DA 3 N6 ? ? ? 1_555 C DT 11 O4 ? ? D DA 25 E DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 10 N1 ? ? D DT 26 E DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 10 N6 ? ? D DT 26 E DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 9 N1 ? ? D DC 27 E DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 9 O6 ? ? D DC 27 E DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 9 N2 ? ? D DC 27 E DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 8 N3 ? ? D DG 28 E DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 8 O2 ? ? D DG 28 E DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 8 N4 ? ? D DG 28 E DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B DG 7 N1 ? ? ? 1_555 C DC 7 N3 ? ? D DG 29 E DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B DG 7 N2 ? ? ? 1_555 C DC 7 O2 ? ? D DG 29 E DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B DG 7 O6 ? ? ? 1_555 C DC 7 N4 ? ? D DG 29 E DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 6 N3 ? ? D DA 30 E DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 6 O4 ? ? D DA 30 E DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B DA 10 N1 ? ? ? 1_555 C DT 4 N3 ? ? D DA 32 E DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B DA 10 N6 ? ? ? 1_555 C DT 4 O4 ? ? D DA 32 E DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B DC 11 O2 ? ? ? 1_555 C DG 3 N1 ? ? D DC 33 E DG 4 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog65 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 2 N1 ? ? D DT 34 E DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 2 N6 ? ? D DT 34 E DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B DG 13 N1 ? ? ? 1_555 C DC 1 N3 ? ? D DG 35 E DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B DG 13 N2 ? ? ? 1_555 C DC 1 O2 ? ? D DG 35 E DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B DG 13 O6 ? ? ? 1_555 C DC 1 N4 ? ? D DG 35 E DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel B 1 2 ? parallel B 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE E 33 ? LYS E 37 ? ILE A 33 LYS A 37 A 2 LEU E 3 ? VAL E 9 ? LEU A 3 VAL A 9 A 3 VAL E 60 ? VAL E 63 ? VAL A 60 VAL A 63 A 4 SER E 89 ? PHE E 92 ? SER A 89 PHE A 92 B 1 LEU F 3 ? TYR F 6 ? LEU B 3 TYR B 6 B 2 VAL F 60 ? VAL F 63 ? VAL B 60 VAL B 63 B 3 SER F 89 ? PHE F 92 ? SER B 89 PHE B 92 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE E 34 ? O PHE A 34 N GLY E 5 ? N GLY A 5 A 2 3 O PHE E 4 ? O PHE A 4 N VAL E 60 ? N VAL A 60 A 3 4 O ILE E 61 ? O ILE A 61 N SER E 89 ? N SER A 89 B 1 2 O PHE F 4 ? O PHE B 4 N VAL F 60 ? N VAL B 60 B 2 3 O ILE F 61 ? O ILE B 61 N SER F 89 ? N SER B 89 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P C DG 6 ? ? "O5'" C DG 6 ? ? 1.518 1.593 -0.075 0.010 N 2 1 "C5'" C DG 6 ? ? "C4'" C DG 6 ? ? 1.442 1.509 -0.067 0.011 N 3 1 "C3'" C DT 17 ? ? "C2'" C DT 17 ? ? 1.444 1.516 -0.072 0.008 N 4 1 "C5'" D DC 31 ? ? "C4'" D DC 31 ? ? 1.555 1.512 0.043 0.007 N 5 1 "C3'" E DT 15 ? ? "C2'" E DT 15 ? ? 1.462 1.516 -0.054 0.008 N 6 1 "C3'" F DT 23 ? ? "C2'" F DT 23 ? ? 1.468 1.516 -0.048 0.008 N 7 1 C4 F DA 25 ? ? C5 F DA 25 ? ? 1.338 1.383 -0.045 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DT 15 ? ? "C1'" C DT 15 ? ? N1 C DT 15 ? ? 110.43 108.30 2.13 0.30 N 2 1 "O4'" C DT 17 ? ? "C1'" C DT 17 ? ? N1 C DT 17 ? ? 111.41 108.30 3.11 0.30 N 3 1 "O4'" D DG 28 ? ? "C1'" D DG 28 ? ? N9 D DG 28 ? ? 110.18 108.30 1.88 0.30 N 4 1 "O4'" E DG 6 ? ? "C1'" E DG 6 ? ? N9 E DG 6 ? ? 110.85 108.30 2.55 0.30 N 5 1 "O4'" E DA 18 ? ? "C1'" E DA 18 ? ? N9 E DA 18 ? ? 110.86 108.30 2.56 0.30 N 6 1 "O4'" F DT 23 ? ? "C1'" F DT 23 ? ? N1 F DT 23 ? ? 110.46 108.30 2.16 0.30 N 7 1 "O4'" F DG 29 ? ? "C1'" F DG 29 ? ? N9 F DG 29 ? ? 110.13 108.30 1.83 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 11 ? ? 63.65 -81.82 2 1 SER A 12 ? ? 179.12 -169.09 3 1 GLN A 13 ? ? -33.02 -37.52 4 1 ALA A 30 ? ? -47.90 -10.74 5 1 ALA A 38 ? ? -51.54 82.52 6 1 ASP A 44 ? ? -124.85 -64.92 7 1 ARG A 45 ? ? 56.60 70.87 8 1 ASP A 67 ? ? -72.57 26.69 9 1 ARG A 71 ? ? -87.77 -81.40 10 1 ASP A 94 ? ? -78.88 28.83 11 1 ASP A 95 ? ? -142.22 -12.00 12 1 ASP A 100 ? ? -44.03 101.65 13 1 GLU A 181 ? ? -57.07 100.68 14 1 SER A 182 ? ? 75.38 -6.92 15 1 THR B 11 ? ? -142.22 -41.78 16 1 SER B 12 ? ? -51.57 97.98 17 1 SER B 43 ? ? -153.52 -32.74 18 1 ARG B 45 ? ? -156.64 -9.77 19 1 LYS B 46 ? ? -35.54 -70.56 20 1 ASP B 67 ? ? -69.51 13.88 21 1 ILE B 93 ? ? -44.39 -76.27 22 1 GLN B 157 ? ? -80.44 35.21 23 1 ASN B 169 ? ? 75.05 47.08 # _pdbx_entry_details.entry_id 1GDT _pdbx_entry_details.compound_details ;RESOLVASE GENE IS PUT UNDER THE CONTROL OF THE LAMBDA PROMOTER AND INDUCED BY NALIDIXIC ACID. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 HIS N N N N 266 HIS CA C N S 267 HIS C C N N 268 HIS O O N N 269 HIS CB C N N 270 HIS CG C Y N 271 HIS ND1 N Y N 272 HIS CD2 C Y N 273 HIS CE1 C Y N 274 HIS NE2 N Y N 275 HIS OXT O N N 276 HIS H H N N 277 HIS H2 H N N 278 HIS HA H N N 279 HIS HB2 H N N 280 HIS HB3 H N N 281 HIS HD1 H N N 282 HIS HD2 H N N 283 HIS HE1 H N N 284 HIS HE2 H N N 285 HIS HXT H N N 286 HOH O O N N 287 HOH H1 H N N 288 HOH H2 H N N 289 ILE N N N N 290 ILE CA C N S 291 ILE C C N N 292 ILE O O N N 293 ILE CB C N S 294 ILE CG1 C N N 295 ILE CG2 C N N 296 ILE CD1 C N N 297 ILE OXT O N N 298 ILE H H N N 299 ILE H2 H N N 300 ILE HA H N N 301 ILE HB H N N 302 ILE HG12 H N N 303 ILE HG13 H N N 304 ILE HG21 H N N 305 ILE HG22 H N N 306 ILE HG23 H N N 307 ILE HD11 H N N 308 ILE HD12 H N N 309 ILE HD13 H N N 310 ILE HXT H N N 311 LEU N N N N 312 LEU CA C N S 313 LEU C C N N 314 LEU O O N N 315 LEU CB C N N 316 LEU CG C N N 317 LEU CD1 C N N 318 LEU CD2 C N N 319 LEU OXT O N N 320 LEU H H N N 321 LEU H2 H N N 322 LEU HA H N N 323 LEU HB2 H N N 324 LEU HB3 H N N 325 LEU HG H N N 326 LEU HD11 H N N 327 LEU HD12 H N N 328 LEU HD13 H N N 329 LEU HD21 H N N 330 LEU HD22 H N N 331 LEU HD23 H N N 332 LEU HXT H N N 333 LYS N N N N 334 LYS CA C N S 335 LYS C C N N 336 LYS O O N N 337 LYS CB C N N 338 LYS CG C N N 339 LYS CD C N N 340 LYS CE C N N 341 LYS NZ N N N 342 LYS OXT O N N 343 LYS H H N N 344 LYS H2 H N N 345 LYS HA H N N 346 LYS HB2 H N N 347 LYS HB3 H N N 348 LYS HG2 H N N 349 LYS HG3 H N N 350 LYS HD2 H N N 351 LYS HD3 H N N 352 LYS HE2 H N N 353 LYS HE3 H N N 354 LYS HZ1 H N N 355 LYS HZ2 H N N 356 LYS HZ3 H N N 357 LYS HXT H N N 358 MET N N N N 359 MET CA C N S 360 MET C C N N 361 MET O O N N 362 MET CB C N N 363 MET CG C N N 364 MET SD S N N 365 MET CE C N N 366 MET OXT O N N 367 MET H H N N 368 MET H2 H N N 369 MET HA H N N 370 MET HB2 H N N 371 MET HB3 H N N 372 MET HG2 H N N 373 MET HG3 H N N 374 MET HE1 H N N 375 MET HE2 H N N 376 MET HE3 H N N 377 MET HXT H N N 378 PHE N N N N 379 PHE CA C N S 380 PHE C C N N 381 PHE O O N N 382 PHE CB C N N 383 PHE CG C Y N 384 PHE CD1 C Y N 385 PHE CD2 C Y N 386 PHE CE1 C Y N 387 PHE CE2 C Y N 388 PHE CZ C Y N 389 PHE OXT O N N 390 PHE H H N N 391 PHE H2 H N N 392 PHE HA H N N 393 PHE HB2 H N N 394 PHE HB3 H N N 395 PHE HD1 H N N 396 PHE HD2 H N N 397 PHE HE1 H N N 398 PHE HE2 H N N 399 PHE HZ H N N 400 PHE HXT H N N 401 SER N N N N 402 SER CA C N S 403 SER C C N N 404 SER O O N N 405 SER CB C N N 406 SER OG O N N 407 SER OXT O N N 408 SER H H N N 409 SER H2 H N N 410 SER HA H N N 411 SER HB2 H N N 412 SER HB3 H N N 413 SER HG H N N 414 SER HXT H N N 415 THR N N N N 416 THR CA C N S 417 THR C C N N 418 THR O O N N 419 THR CB C N R 420 THR OG1 O N N 421 THR CG2 C N N 422 THR OXT O N N 423 THR H H N N 424 THR H2 H N N 425 THR HA H N N 426 THR HB H N N 427 THR HG1 H N N 428 THR HG21 H N N 429 THR HG22 H N N 430 THR HG23 H N N 431 THR HXT H N N 432 TRP N N N N 433 TRP CA C N S 434 TRP C C N N 435 TRP O O N N 436 TRP CB C N N 437 TRP CG C Y N 438 TRP CD1 C Y N 439 TRP CD2 C Y N 440 TRP NE1 N Y N 441 TRP CE2 C Y N 442 TRP CE3 C Y N 443 TRP CZ2 C Y N 444 TRP CZ3 C Y N 445 TRP CH2 C Y N 446 TRP OXT O N N 447 TRP H H N N 448 TRP H2 H N N 449 TRP HA H N N 450 TRP HB2 H N N 451 TRP HB3 H N N 452 TRP HD1 H N N 453 TRP HE1 H N N 454 TRP HE3 H N N 455 TRP HZ2 H N N 456 TRP HZ3 H N N 457 TRP HH2 H N N 458 TRP HXT H N N 459 TYR N N N N 460 TYR CA C N S 461 TYR C C N N 462 TYR O O N N 463 TYR CB C N N 464 TYR CG C Y N 465 TYR CD1 C Y N 466 TYR CD2 C Y N 467 TYR CE1 C Y N 468 TYR CE2 C Y N 469 TYR CZ C Y N 470 TYR OH O N N 471 TYR OXT O N N 472 TYR H H N N 473 TYR H2 H N N 474 TYR HA H N N 475 TYR HB2 H N N 476 TYR HB3 H N N 477 TYR HD1 H N N 478 TYR HD2 H N N 479 TYR HE1 H N N 480 TYR HE2 H N N 481 TYR HH H N N 482 TYR HXT H N N 483 VAL N N N N 484 VAL CA C N S 485 VAL C C N N 486 VAL O O N N 487 VAL CB C N N 488 VAL CG1 C N N 489 VAL CG2 C N N 490 VAL OXT O N N 491 VAL H H N N 492 VAL H2 H N N 493 VAL HA H N N 494 VAL HB H N N 495 VAL HG11 H N N 496 VAL HG12 H N N 497 VAL HG13 H N N 498 VAL HG21 H N N 499 VAL HG22 H N N 500 VAL HG23 H N N 501 VAL HXT H N N 502 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HIS N CA sing N N 265 HIS N H sing N N 266 HIS N H2 sing N N 267 HIS CA C sing N N 268 HIS CA CB sing N N 269 HIS CA HA sing N N 270 HIS C O doub N N 271 HIS C OXT sing N N 272 HIS CB CG sing N N 273 HIS CB HB2 sing N N 274 HIS CB HB3 sing N N 275 HIS CG ND1 sing Y N 276 HIS CG CD2 doub Y N 277 HIS ND1 CE1 doub Y N 278 HIS ND1 HD1 sing N N 279 HIS CD2 NE2 sing Y N 280 HIS CD2 HD2 sing N N 281 HIS CE1 NE2 sing Y N 282 HIS CE1 HE1 sing N N 283 HIS NE2 HE2 sing N N 284 HIS OXT HXT sing N N 285 HOH O H1 sing N N 286 HOH O H2 sing N N 287 ILE N CA sing N N 288 ILE N H sing N N 289 ILE N H2 sing N N 290 ILE CA C sing N N 291 ILE CA CB sing N N 292 ILE CA HA sing N N 293 ILE C O doub N N 294 ILE C OXT sing N N 295 ILE CB CG1 sing N N 296 ILE CB CG2 sing N N 297 ILE CB HB sing N N 298 ILE CG1 CD1 sing N N 299 ILE CG1 HG12 sing N N 300 ILE CG1 HG13 sing N N 301 ILE CG2 HG21 sing N N 302 ILE CG2 HG22 sing N N 303 ILE CG2 HG23 sing N N 304 ILE CD1 HD11 sing N N 305 ILE CD1 HD12 sing N N 306 ILE CD1 HD13 sing N N 307 ILE OXT HXT sing N N 308 LEU N CA sing N N 309 LEU N H sing N N 310 LEU N H2 sing N N 311 LEU CA C sing N N 312 LEU CA CB sing N N 313 LEU CA HA sing N N 314 LEU C O doub N N 315 LEU C OXT sing N N 316 LEU CB CG sing N N 317 LEU CB HB2 sing N N 318 LEU CB HB3 sing N N 319 LEU CG CD1 sing N N 320 LEU CG CD2 sing N N 321 LEU CG HG sing N N 322 LEU CD1 HD11 sing N N 323 LEU CD1 HD12 sing N N 324 LEU CD1 HD13 sing N N 325 LEU CD2 HD21 sing N N 326 LEU CD2 HD22 sing N N 327 LEU CD2 HD23 sing N N 328 LEU OXT HXT sing N N 329 LYS N CA sing N N 330 LYS N H sing N N 331 LYS N H2 sing N N 332 LYS CA C sing N N 333 LYS CA CB sing N N 334 LYS CA HA sing N N 335 LYS C O doub N N 336 LYS C OXT sing N N 337 LYS CB CG sing N N 338 LYS CB HB2 sing N N 339 LYS CB HB3 sing N N 340 LYS CG CD sing N N 341 LYS CG HG2 sing N N 342 LYS CG HG3 sing N N 343 LYS CD CE sing N N 344 LYS CD HD2 sing N N 345 LYS CD HD3 sing N N 346 LYS CE NZ sing N N 347 LYS CE HE2 sing N N 348 LYS CE HE3 sing N N 349 LYS NZ HZ1 sing N N 350 LYS NZ HZ2 sing N N 351 LYS NZ HZ3 sing N N 352 LYS OXT HXT sing N N 353 MET N CA sing N N 354 MET N H sing N N 355 MET N H2 sing N N 356 MET CA C sing N N 357 MET CA CB sing N N 358 MET CA HA sing N N 359 MET C O doub N N 360 MET C OXT sing N N 361 MET CB CG sing N N 362 MET CB HB2 sing N N 363 MET CB HB3 sing N N 364 MET CG SD sing N N 365 MET CG HG2 sing N N 366 MET CG HG3 sing N N 367 MET SD CE sing N N 368 MET CE HE1 sing N N 369 MET CE HE2 sing N N 370 MET CE HE3 sing N N 371 MET OXT HXT sing N N 372 PHE N CA sing N N 373 PHE N H sing N N 374 PHE N H2 sing N N 375 PHE CA C sing N N 376 PHE CA CB sing N N 377 PHE CA HA sing N N 378 PHE C O doub N N 379 PHE C OXT sing N N 380 PHE CB CG sing N N 381 PHE CB HB2 sing N N 382 PHE CB HB3 sing N N 383 PHE CG CD1 doub Y N 384 PHE CG CD2 sing Y N 385 PHE CD1 CE1 sing Y N 386 PHE CD1 HD1 sing N N 387 PHE CD2 CE2 doub Y N 388 PHE CD2 HD2 sing N N 389 PHE CE1 CZ doub Y N 390 PHE CE1 HE1 sing N N 391 PHE CE2 CZ sing Y N 392 PHE CE2 HE2 sing N N 393 PHE CZ HZ sing N N 394 PHE OXT HXT sing N N 395 SER N CA sing N N 396 SER N H sing N N 397 SER N H2 sing N N 398 SER CA C sing N N 399 SER CA CB sing N N 400 SER CA HA sing N N 401 SER C O doub N N 402 SER C OXT sing N N 403 SER CB OG sing N N 404 SER CB HB2 sing N N 405 SER CB HB3 sing N N 406 SER OG HG sing N N 407 SER OXT HXT sing N N 408 THR N CA sing N N 409 THR N H sing N N 410 THR N H2 sing N N 411 THR CA C sing N N 412 THR CA CB sing N N 413 THR CA HA sing N N 414 THR C O doub N N 415 THR C OXT sing N N 416 THR CB OG1 sing N N 417 THR CB CG2 sing N N 418 THR CB HB sing N N 419 THR OG1 HG1 sing N N 420 THR CG2 HG21 sing N N 421 THR CG2 HG22 sing N N 422 THR CG2 HG23 sing N N 423 THR OXT HXT sing N N 424 TRP N CA sing N N 425 TRP N H sing N N 426 TRP N H2 sing N N 427 TRP CA C sing N N 428 TRP CA CB sing N N 429 TRP CA HA sing N N 430 TRP C O doub N N 431 TRP C OXT sing N N 432 TRP CB CG sing N N 433 TRP CB HB2 sing N N 434 TRP CB HB3 sing N N 435 TRP CG CD1 doub Y N 436 TRP CG CD2 sing Y N 437 TRP CD1 NE1 sing Y N 438 TRP CD1 HD1 sing N N 439 TRP CD2 CE2 doub Y N 440 TRP CD2 CE3 sing Y N 441 TRP NE1 CE2 sing Y N 442 TRP NE1 HE1 sing N N 443 TRP CE2 CZ2 sing Y N 444 TRP CE3 CZ3 doub Y N 445 TRP CE3 HE3 sing N N 446 TRP CZ2 CH2 doub Y N 447 TRP CZ2 HZ2 sing N N 448 TRP CZ3 CH2 sing Y N 449 TRP CZ3 HZ3 sing N N 450 TRP CH2 HH2 sing N N 451 TRP OXT HXT sing N N 452 TYR N CA sing N N 453 TYR N H sing N N 454 TYR N H2 sing N N 455 TYR CA C sing N N 456 TYR CA CB sing N N 457 TYR CA HA sing N N 458 TYR C O doub N N 459 TYR C OXT sing N N 460 TYR CB CG sing N N 461 TYR CB HB2 sing N N 462 TYR CB HB3 sing N N 463 TYR CG CD1 doub Y N 464 TYR CG CD2 sing Y N 465 TYR CD1 CE1 sing Y N 466 TYR CD1 HD1 sing N N 467 TYR CD2 CE2 doub Y N 468 TYR CD2 HD2 sing N N 469 TYR CE1 CZ doub Y N 470 TYR CE1 HE1 sing N N 471 TYR CE2 CZ sing Y N 472 TYR CE2 HE2 sing N N 473 TYR CZ OH sing N N 474 TYR OH HH sing N N 475 TYR OXT HXT sing N N 476 VAL N CA sing N N 477 VAL N H sing N N 478 VAL N H2 sing N N 479 VAL CA C sing N N 480 VAL CA CB sing N N 481 VAL CA HA sing N N 482 VAL C O doub N N 483 VAL C OXT sing N N 484 VAL CB CG1 sing N N 485 VAL CB CG2 sing N N 486 VAL CB HB sing N N 487 VAL CG1 HG11 sing N N 488 VAL CG1 HG12 sing N N 489 VAL CG1 HG13 sing N N 490 VAL CG2 HG21 sing N N 491 VAL CG2 HG22 sing N N 492 VAL CG2 HG23 sing N N 493 VAL OXT HXT sing N N 494 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1GDT 'double helix' 1GDT 'b-form double helix' 1GDT 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 D DG 13 1_555 -0.256 -0.030 0.043 10.973 -11.732 2.602 1 C_DC2:DG35_F C 2 ? F 35 ? 19 1 1 A DA 3 1_555 D DT 12 1_555 -0.190 -0.123 0.128 9.845 -14.497 1.604 2 C_DA3:DT34_F C 3 ? F 34 ? 20 1 1 A DG 4 1_555 D DC 11 1_555 -2.235 -0.606 -0.883 -11.574 -20.813 -2.624 3 C_DG4:DC33_F C 4 ? F 33 ? ? ? 1 A DT 5 1_555 D DA 10 1_555 -1.026 0.266 -0.415 -6.589 -17.531 5.489 4 C_DT5:DA32_F C 5 ? F 32 ? ? ? 1 A DG 6 1_555 D DC 9 1_555 0.007 -0.107 -0.010 2.209 -6.584 2.523 5 C_DG6:DC31_F C 6 ? F 31 ? 19 1 1 A DT 7 1_555 D DA 8 1_555 -0.445 -0.262 -0.321 13.841 -11.212 -3.189 6 C_DT7:DA30_F C 7 ? F 30 ? 20 1 1 A DC 8 1_555 D DG 7 1_555 -0.078 -0.381 -0.666 10.759 -7.784 -0.258 7 C_DC8:DG29_F C 8 ? F 29 ? 19 1 1 A DC 9 1_555 D DG 6 1_555 -0.272 0.029 -0.451 8.369 -0.191 -1.429 8 C_DC9:DG28_F C 9 ? F 28 ? 19 1 1 A DG 10 1_555 D DC 5 1_555 -0.004 -0.099 0.200 7.159 -13.041 0.874 9 C_DG10:DC27_F C 10 ? F 27 ? 19 1 1 A DA 11 1_555 D DT 4 1_555 0.658 -0.150 -0.100 -8.579 -9.120 -0.118 10 C_DA11:DT26_F C 11 ? F 26 ? 20 1 1 A DT 12 1_555 D DA 3 1_555 0.006 -0.148 -0.676 1.301 -14.326 -0.787 11 C_DT12:DA25_F C 12 ? F 25 ? 20 1 1 A DA 14 1_555 D DT 1 1_555 -0.080 -0.125 -0.999 -20.143 -16.579 4.292 12 C_DA14:DT23_F C 14 ? F 23 ? 20 1 1 A DT 15 1_555 C DA 21 1_555 -0.269 -0.083 -0.510 -2.824 -15.493 -1.387 13 C_DT15:DA22_E C 15 ? E 22 ? 20 1 1 A DT 16 1_555 C DA 20 1_555 -1.100 -0.087 -1.205 -3.016 -11.734 -0.423 14 C_DT16:DA21_E C 16 ? E 21 ? 20 1 1 A DT 17 1_555 C DA 19 1_555 -0.666 -0.064 -1.402 20.542 8.519 -16.969 15 C_DT17:DA20_E C 17 ? E 20 ? 20 1 1 A DA 18 1_555 C DT 18 1_555 0.586 -0.482 -0.843 0.641 8.665 -5.930 16 C_DA18:DT19_E C 18 ? E 19 ? 20 1 1 A DT 19 1_555 C DA 17 1_555 0.480 -0.328 -0.963 7.560 3.016 -4.835 17 C_DT19:DA18_E C 19 ? E 18 ? 20 1 1 A DA 20 1_555 C DT 16 1_555 0.601 -0.634 -2.013 -21.326 -18.711 -5.123 18 C_DA20:DT17_E C 20 ? E 17 ? 20 1 1 A DA 21 1_555 C DT 15 1_555 -0.290 0.261 -1.169 -13.154 -13.983 5.888 19 C_DA21:DT16_E C 21 ? E 16 ? ? ? 1 B DT 1 1_555 C DA 13 1_555 0.675 -0.246 -1.405 9.112 -17.026 6.518 20 D_DT23:DA14_E D 23 ? E 14 ? 20 1 1 B DT 2 1_555 C DA 12 1_555 -0.078 -0.460 -1.232 15.892 -10.039 -0.861 21 D_DT24:DA13_E D 24 ? E 13 ? 20 1 1 B DA 3 1_555 C DT 11 1_555 0.016 -0.228 -0.264 -10.399 -12.729 1.905 22 D_DA25:DT12_E D 25 ? E 12 ? 20 1 1 B DT 4 1_555 C DA 10 1_555 0.119 -0.208 -0.375 -0.433 -11.121 -0.155 23 D_DT26:DA11_E D 26 ? E 11 ? 20 1 1 B DC 5 1_555 C DG 9 1_555 -0.189 -0.019 -0.308 -3.174 -12.358 -1.767 24 D_DC27:DG10_E D 27 ? E 10 ? 19 1 1 B DG 6 1_555 C DC 8 1_555 -0.880 -0.617 -0.122 -10.000 -7.407 0.137 25 D_DG28:DC9_E D 28 ? E 9 ? 19 1 1 B DG 7 1_555 C DC 7 1_555 -0.706 -0.343 -0.152 9.562 -2.903 -11.299 26 D_DG29:DC8_E D 29 ? E 8 ? 19 1 1 B DA 8 1_555 C DT 6 1_555 -0.290 -0.192 0.422 11.126 -17.044 -1.089 27 D_DA30:DT7_E D 30 ? E 7 ? 20 1 1 B DA 10 1_555 C DT 4 1_555 0.567 0.230 -0.323 0.948 -14.410 4.576 28 D_DA32:DT5_E D 32 ? E 5 ? 20 1 1 B DC 11 1_555 C DG 3 1_555 2.630 -0.598 -0.411 8.272 -23.366 0.897 29 D_DC33:DG4_E D 33 ? E 4 ? ? ? 1 B DT 12 1_555 C DA 2 1_555 -1.495 -0.070 -0.576 0.761 -13.117 -14.785 30 D_DT34:DA3_E D 34 ? E 3 ? 20 1 1 B DG 13 1_555 C DC 1 1_555 0.473 -0.280 -0.086 -5.727 -11.601 -2.340 31 D_DG35:DC2_E D 35 ? E 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 D DG 13 1_555 A DA 3 1_555 D DT 12 1_555 -0.394 0.634 3.382 0.157 1.873 37.510 0.732 0.634 3.407 2.911 -0.244 37.555 1 CC_DC2DA3:DT34DG35_FF C 2 ? F 35 ? C 3 ? F 34 ? 1 A DA 3 1_555 D DT 12 1_555 A DG 4 1_555 D DC 11 1_555 -0.126 -0.915 3.786 0.327 8.767 28.693 -3.790 0.320 3.364 17.189 -0.640 29.977 2 CC_DA3DG4:DC33DT34_FF C 3 ? F 34 ? C 4 ? F 33 ? 1 A DG 4 1_555 D DC 11 1_555 A DT 5 1_555 D DA 10 1_555 -0.308 -0.432 3.240 -4.189 -3.401 34.425 -0.203 -0.124 3.280 -5.702 7.024 34.833 3 CC_DG4DT5:DA32DC33_FF C 4 ? F 33 ? C 5 ? F 32 ? 1 A DT 5 1_555 D DA 10 1_555 A DG 6 1_555 D DC 9 1_555 -0.265 0.622 3.178 -6.976 14.053 32.384 -1.048 -0.591 3.164 23.550 11.690 35.893 4 CC_DT5DG6:DC31DA32_FF C 5 ? F 32 ? C 6 ? F 31 ? 1 A DG 6 1_555 D DC 9 1_555 A DT 7 1_555 D DA 8 1_555 -0.269 0.046 2.912 2.972 1.019 33.206 -0.069 0.907 2.878 1.777 -5.186 33.350 5 CC_DG6DT7:DA30DC31_FF C 6 ? F 31 ? C 7 ? F 30 ? 1 A DT 7 1_555 D DA 8 1_555 A DC 8 1_555 D DG 7 1_555 0.857 -0.440 3.299 6.650 7.899 34.289 -1.878 -0.417 3.227 13.035 -10.976 35.765 6 CC_DT7DC8:DG29DA30_FF C 7 ? F 30 ? C 8 ? F 29 ? 1 A DC 8 1_555 D DG 7 1_555 A DC 9 1_555 D DG 6 1_555 -0.296 -0.232 3.606 -0.819 4.449 27.061 -1.695 0.402 3.530 9.425 1.736 27.429 7 CC_DC8DC9:DG28DG29_FF C 8 ? F 29 ? C 9 ? F 28 ? 1 A DC 9 1_555 D DG 6 1_555 A DG 10 1_555 D DC 5 1_555 -0.257 0.482 3.442 -2.135 6.627 39.184 -0.112 0.114 3.483 9.787 3.154 39.774 8 CC_DC9DG10:DC27DG28_FF C 9 ? F 28 ? C 10 ? F 27 ? 1 A DG 10 1_555 D DC 5 1_555 A DA 11 1_555 D DT 4 1_555 -0.266 -0.443 3.538 -0.805 2.311 40.550 -0.915 0.287 3.513 3.331 1.161 40.620 9 CC_DG10DA11:DT26DC27_FF C 10 ? F 27 ? C 11 ? F 26 ? 1 A DA 11 1_555 D DT 4 1_555 A DT 12 1_555 D DA 3 1_555 -0.187 -0.538 2.970 4.713 -0.116 27.989 -1.073 1.363 2.902 -0.238 -9.657 28.375 10 CC_DA11DT12:DA25DT26_FF C 11 ? F 26 ? C 12 ? F 25 ? 1 A DT 12 1_555 D DA 3 1_555 A DA 14 1_555 D DT 1 1_555 0.326 -0.821 7.243 -0.827 16.489 68.929 -1.976 -0.345 6.919 14.361 0.720 70.640 11 CC_DT12DA14:DT23DA25_FF C 12 ? F 25 ? C 14 ? F 23 ? 1 A DA 14 1_555 D DT 1 1_555 A DT 15 1_555 C DA 21 1_555 -0.174 -0.406 2.791 -2.121 2.108 30.903 -1.104 -0.021 2.763 3.945 3.969 31.044 12 CC_DA14DT15:DA22DT23_EF C 14 ? F 23 ? C 15 ? E 22 ? 1 A DT 15 1_555 C DA 21 1_555 A DT 16 1_555 C DA 20 1_555 -0.068 0.281 3.139 1.856 8.808 31.266 -0.996 0.437 3.093 15.933 -3.357 32.505 13 CC_DT15DT16:DA21DA22_EE C 15 ? E 22 ? C 16 ? E 21 ? 1 A DT 16 1_555 C DA 20 1_555 A DT 17 1_555 C DA 19 1_555 -0.481 0.451 3.027 -2.545 4.143 32.099 0.124 0.441 3.088 7.440 4.570 32.456 14 CC_DT16DT17:DA20DA21_EE C 16 ? E 21 ? C 17 ? E 20 ? 1 A DT 17 1_555 C DA 19 1_555 A DA 18 1_555 C DT 18 1_555 0.387 -0.034 4.337 1.206 39.962 25.557 -4.544 -0.348 2.379 58.672 -1.771 47.167 15 CC_DT17DA18:DT19DA20_EE C 17 ? E 20 ? C 18 ? E 19 ? 1 A DA 18 1_555 C DT 18 1_555 A DT 19 1_555 C DA 17 1_555 -0.118 -0.467 3.458 0.384 10.997 29.554 -2.983 0.291 3.089 20.677 -0.722 31.493 16 CC_DA18DT19:DA18DT19_EE C 18 ? E 19 ? C 19 ? E 18 ? 1 A DT 19 1_555 C DA 17 1_555 A DA 20 1_555 C DT 16 1_555 -0.694 -0.046 4.310 9.335 22.069 30.175 -3.665 2.577 3.224 36.094 -15.267 38.358 17 CC_DT19DA20:DT17DA18_EE C 19 ? E 18 ? C 20 ? E 17 ? 1 A DA 20 1_555 C DT 16 1_555 A DA 21 1_555 C DT 15 1_555 0.923 0.305 2.875 -6.222 14.156 23.832 -2.239 -3.143 2.375 30.509 13.410 28.348 18 CC_DA20DA21:DT16DT17_EE C 20 ? E 17 ? C 21 ? E 16 ? 1 A DA 21 1_555 C DT 15 1_555 B DT 1 1_555 C DA 13 1_555 0.664 -0.006 5.711 5.691 16.617 69.827 -0.995 -0.228 5.624 14.291 -4.894 71.730 19 CD_DA21DT23:DA14DT16_EE C 21 ? E 16 ? D 23 ? E 14 ? 1 B DT 1 1_555 C DA 13 1_555 B DT 2 1_555 C DA 12 1_555 -0.096 0.307 3.047 -0.793 11.147 29.102 -1.454 0.036 2.963 21.221 1.510 31.130 20 DD_DT23DT24:DA13DA14_EE D 23 ? E 14 ? D 24 ? E 13 ? 1 B DT 2 1_555 C DA 12 1_555 B DA 3 1_555 C DT 11 1_555 0.057 -0.345 4.083 -4.699 11.768 38.912 -2.093 -0.720 3.795 17.122 6.837 40.847 21 DD_DT24DA25:DT12DA13_EE D 24 ? E 13 ? D 25 ? E 12 ? 1 B DA 3 1_555 C DT 11 1_555 B DT 4 1_555 C DA 10 1_555 -0.272 -0.515 3.022 1.555 -5.979 34.324 -0.010 0.674 3.051 -10.030 -2.608 34.859 22 DD_DA25DT26:DA11DT12_EE D 25 ? E 12 ? D 26 ? E 11 ? 1 B DT 4 1_555 C DA 10 1_555 B DC 5 1_555 C DG 9 1_555 0.097 -0.084 3.216 1.357 3.402 36.279 -0.597 0.030 3.196 5.447 -2.173 36.457 23 DD_DT26DC27:DG10DA11_EE D 26 ? E 11 ? D 27 ? E 10 ? 1 B DC 5 1_555 C DG 9 1_555 B DG 6 1_555 C DC 8 1_555 0.621 0.335 3.516 -1.619 4.902 34.754 -0.235 -1.290 3.498 8.151 2.693 35.123 24 DD_DC27DG28:DC9DG10_EE D 27 ? E 10 ? D 28 ? E 9 ? 1 B DG 6 1_555 C DC 8 1_555 B DG 7 1_555 C DC 7 1_555 0.033 -0.187 2.899 1.423 2.552 24.746 -1.108 0.300 2.863 5.928 -3.305 24.915 25 DD_DG28DG29:DC8DC9_EE D 28 ? E 9 ? D 29 ? E 8 ? 1 B DG 7 1_555 C DC 7 1_555 B DA 8 1_555 C DT 6 1_555 0.207 -0.022 3.216 -3.434 1.208 38.081 -0.182 -0.740 3.184 1.847 5.249 38.249 26 DD_DG29DA30:DT7DC8_EE D 29 ? E 8 ? D 30 ? E 7 ? 1 B DA 8 1_555 C DT 6 1_555 B DA 10 1_555 C DT 4 1_555 0.051 -0.782 6.666 1.188 14.962 66.178 -1.862 0.046 6.384 13.524 -1.074 67.670 27 DD_DA30DA32:DT5DT7_EE D 30 ? E 7 ? D 32 ? E 5 ? 1 B DA 10 1_555 C DT 4 1_555 B DC 11 1_555 C DG 3 1_555 -0.510 0.211 3.387 1.457 2.379 42.722 0.044 0.849 3.376 3.261 -1.997 42.808 28 DD_DA32DC33:DG4DT5_EE D 32 ? E 5 ? D 33 ? E 4 ? 1 B DC 11 1_555 C DG 3 1_555 B DT 12 1_555 C DA 2 1_555 -0.644 -0.185 3.155 6.123 11.268 20.598 -3.755 3.335 2.442 28.251 -15.352 24.227 29 DD_DC33DT34:DA3DG4_EE D 33 ? E 4 ? D 34 ? E 3 ? 1 B DT 12 1_555 C DA 2 1_555 B DG 13 1_555 C DC 1 1_555 1.018 0.306 3.709 -6.638 13.482 41.336 -1.038 -2.076 3.447 18.383 9.052 43.870 30 DD_DT34DG35:DC2DA3_EE D 34 ? E 3 ? D 35 ? E 2 ? # _atom_sites.entry_id 1GDT _atom_sites.fract_transf_matrix[1][1] 0.008850 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006369 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026882 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_