HEADER TRANSCRIPTION/DNA 30-AUG-92 1GLU TITLE CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE GLUCOCORTICOID TITLE 2 RECEPTOR WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*CP*CP*AP*GP*AP*AP*CP*AP*TP*CP*GP*AP*TP*GP*TP*TP*C P*TP*G)-3'); COMPND 4 CHAIN: C, D; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN (GLUCOCORTICOID RECEPTOR); COMPND 8 CHAIN: A, B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 5 ORGANISM_COMMON: NORWAY RAT; SOURCE 6 ORGANISM_TAXID: 10116; SOURCE 7 ORGAN: LIVER; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_GENE: GENE FRAGMENT (AMINO ACIDS 440 TO 525) KEYWDS PROTEIN-DNA COMPLEX, DOUBLE HELIX, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.F.LUISI,W.X.XU,Z.OTWINOWSKI,L.P.FREEDMAN,K.R.YAMAMOTO,P.B.SIGLER REVDAT 4 07-FEB-24 1GLU 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1GLU 1 VERSN REVDAT 2 15-JAN-95 1GLU 1 SEQRES REVDAT 1 31-JAN-94 1GLU 0 JRNL AUTH B.F.LUISI,W.X.XU,Z.OTWINOWSKI,L.P.FREEDMAN,K.R.YAMAMOTO, JRNL AUTH 2 P.B.SIGLER JRNL TITL CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE JRNL TITL 2 GLUCOCORTICOID RECEPTOR WITH DNA. JRNL REF NATURE V. 352 497 1991 JRNL REFN ISSN 0028-0836 JRNL PMID 1865905 JRNL DOI 10.1038/352497A0 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1256 REMARK 3 NUCLEIC ACID ATOMS : 770 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 BOND ANGLES (DEGREES) : 2.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GLU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173612. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 263.00 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SDMS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.00, VAPOR DIFFUSION, TEMPERATURE REMARK 280 281.00K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.25000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.25000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.25000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.25000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 437 CD PRO A 439 1.85 REMARK 500 O4 DT C 8 O HOH C 13 1.96 REMARK 500 O HOH B 13 O HOH B 29 2.11 REMARK 500 CD2 LEU A 475 NH1 ARG B 488 2.18 REMARK 500 O ALA A 437 N PRO A 439 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC C -10 O4' DC C -10 C4' -0.064 REMARK 500 DC C -10 O3' DC C -10 C3' -0.043 REMARK 500 DC C -9 O4' DC C -9 C4' -0.068 REMARK 500 DG C -7 C5' DG C -7 C4' -0.078 REMARK 500 DG C -7 O4' DG C -7 C4' -0.088 REMARK 500 DA C -6 O4' DA C -6 C4' -0.068 REMARK 500 DC C -4 C5' DC C -4 C4' 0.048 REMARK 500 DG C 1 P DG C 1 O5' 0.065 REMARK 500 DG C 1 N7 DG C 1 C8 0.041 REMARK 500 DG C 1 O3' DA C 2 P 0.073 REMARK 500 DA C 2 P DA C 2 O5' 0.069 REMARK 500 DT C 3 C4 DT C 3 O4 0.057 REMARK 500 DT C 6 P DT C 6 O5' 0.079 REMARK 500 DT C 6 O3' DC C 7 P 0.075 REMARK 500 DT C 8 P DT C 8 O5' 0.078 REMARK 500 DC D -10 O3' DC D -9 P 0.076 REMARK 500 DC D -9 P DC D -9 O5' -0.145 REMARK 500 DC D -9 O3' DA D -8 P 0.084 REMARK 500 DG D -7 O3' DA D -6 P 0.107 REMARK 500 DA D -6 P DA D -6 O5' 0.075 REMARK 500 DA D -5 P DA D -5 O5' 0.077 REMARK 500 DA D -5 O3' DC D -4 P 0.096 REMARK 500 DG D 1 P DG D 1 OP1 0.109 REMARK 500 DA D 2 P DA D 2 O5' 0.074 REMARK 500 DT D 3 O3' DG D 4 P 0.077 REMARK 500 DG D 4 O4' DG D 4 C4' -0.060 REMARK 500 DC D 7 P DC D 7 O5' 0.063 REMARK 500 DC D 7 O3' DT D 8 P 0.088 REMARK 500 DT D 8 O4' DT D 8 C4' -0.066 REMARK 500 DG D 9 P DG D 9 O5' 0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C -10 O5' - C5' - C4' ANGL. DEV. = -10.7 DEGREES REMARK 500 DC C -10 C5' - C4' - O4' ANGL. DEV. = 8.8 DEGREES REMARK 500 DC C -10 O4' - C1' - C2' ANGL. DEV. = -5.8 DEGREES REMARK 500 DC C -10 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 DC C -10 C3' - O3' - P ANGL. DEV. = 26.3 DEGREES REMARK 500 DC C -9 P - O5' - C5' ANGL. DEV. = -14.6 DEGREES REMARK 500 DC C -9 C5' - C4' - O4' ANGL. DEV. = 12.1 DEGREES REMARK 500 DC C -9 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 DA C -8 O3' - P - OP1 ANGL. DEV. = -14.3 DEGREES REMARK 500 DA C -8 O5' - C5' - C4' ANGL. DEV. = -6.0 DEGREES REMARK 500 DA C -8 P - O5' - C5' ANGL. DEV. = -12.7 DEGREES REMARK 500 DA C -8 O4' - C1' - N9 ANGL. DEV. = 5.5 DEGREES REMARK 500 DA C -8 C5 - C6 - N1 ANGL. DEV. = -3.6 DEGREES REMARK 500 DG C -7 P - O5' - C5' ANGL. DEV. = -18.2 DEGREES REMARK 500 DG C -7 C5' - C4' - C3' ANGL. DEV. = 12.6 DEGREES REMARK 500 DG C -7 C5' - C4' - O4' ANGL. DEV. = 10.1 DEGREES REMARK 500 DG C -7 C6 - N1 - C2 ANGL. DEV. = -3.8 DEGREES REMARK 500 DG C -7 C5 - C6 - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DA C -6 P - O5' - C5' ANGL. DEV. = -24.3 DEGREES REMARK 500 DA C -6 C5' - C4' - O4' ANGL. DEV. = 18.0 DEGREES REMARK 500 DA C -6 N1 - C2 - N3 ANGL. DEV. = -4.9 DEGREES REMARK 500 DA C -6 C3' - O3' - P ANGL. DEV. = -9.1 DEGREES REMARK 500 DA C -5 O5' - C5' - C4' ANGL. DEV. = -8.5 DEGREES REMARK 500 DA C -5 P - O5' - C5' ANGL. DEV. = -12.3 DEGREES REMARK 500 DA C -5 O4' - C4' - C3' ANGL. DEV. = 4.3 DEGREES REMARK 500 DA C -5 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA C -5 N1 - C2 - N3 ANGL. DEV. = -3.9 DEGREES REMARK 500 DA C -5 C3' - O3' - P ANGL. DEV. = -15.0 DEGREES REMARK 500 DC C -4 O5' - C5' - C4' ANGL. DEV. = -15.2 DEGREES REMARK 500 DC C -4 O4' - C4' - C3' ANGL. DEV. = 5.4 DEGREES REMARK 500 DC C -4 N1 - C1' - C2' ANGL. DEV. = -14.2 DEGREES REMARK 500 DA C -3 OP1 - P - OP2 ANGL. DEV. = -12.8 DEGREES REMARK 500 DA C -3 N9 - C1' - C2' ANGL. DEV. = -12.6 DEGREES REMARK 500 DA C -3 O4' - C1' - N9 ANGL. DEV. = 12.1 DEGREES REMARK 500 DA C -3 C5 - C6 - N1 ANGL. DEV. = -4.0 DEGREES REMARK 500 DT C -2 OP1 - P - OP2 ANGL. DEV. = -10.6 DEGREES REMARK 500 DT C -2 O4' - C1' - C2' ANGL. DEV. = -6.4 DEGREES REMARK 500 DT C -2 N1 - C2 - N3 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT C -2 C2 - N3 - C4 ANGL. DEV. = -4.7 DEGREES REMARK 500 DT C -2 C3' - O3' - P ANGL. DEV. = 10.5 DEGREES REMARK 500 DC C -1 O5' - P - OP1 ANGL. DEV. = -6.3 DEGREES REMARK 500 DC C -1 O5' - C5' - C4' ANGL. DEV. = -14.0 DEGREES REMARK 500 DC C -1 P - O5' - C5' ANGL. DEV. = -21.2 DEGREES REMARK 500 DC C -1 O4' - C4' - C3' ANGL. DEV. = 4.0 DEGREES REMARK 500 DC C -1 C5' - C4' - O4' ANGL. DEV. = 11.4 DEGREES REMARK 500 DC C -1 C2' - C3' - O3' ANGL. DEV. = 22.6 DEGREES REMARK 500 DC C -1 C3' - O3' - P ANGL. DEV. = -11.8 DEGREES REMARK 500 DG C 1 O5' - P - OP1 ANGL. DEV. = 9.2 DEGREES REMARK 500 DG C 1 P - O5' - C5' ANGL. DEV. = -19.9 DEGREES REMARK 500 DG C 1 O4' - C1' - C2' ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 259 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 435 86.09 -169.36 REMARK 500 PRO A 436 -94.44 -107.18 REMARK 500 ALA A 437 69.79 108.63 REMARK 500 ARG A 438 -75.09 32.03 REMARK 500 CYS A 443 19.45 -160.31 REMARK 500 SER A 444 45.87 29.22 REMARK 500 CYS A 450 91.65 -58.93 REMARK 500 TYR A 452 17.07 34.12 REMARK 500 SER A 459 -75.59 -38.62 REMARK 500 ASN A 473 57.92 -117.97 REMARK 500 ARG A 479 47.27 -142.62 REMARK 500 ASN A 480 65.24 30.68 REMARK 500 ASP A 481 45.44 -153.26 REMARK 500 ARG A 489 -9.93 -59.54 REMARK 500 CYS A 500 -86.46 -51.99 REMARK 500 LEU A 501 -45.48 -24.81 REMARK 500 MET A 505 116.79 -24.81 REMARK 500 ARG A 510 105.74 -52.55 REMARK 500 LYS A 513 -46.72 162.34 REMARK 500 PRO B 436 -127.66 -66.36 REMARK 500 ALA B 437 141.63 -172.95 REMARK 500 CYS B 443 -112.62 -112.41 REMARK 500 SER B 444 4.73 -162.26 REMARK 500 ASP B 445 170.53 -56.66 REMARK 500 ALA B 447 157.71 -44.91 REMARK 500 TYR B 452 44.35 30.02 REMARK 500 GLN B 471 81.59 37.75 REMARK 500 HIS B 472 44.67 -108.84 REMARK 500 ARG B 479 63.26 -108.59 REMARK 500 ASP B 485 168.25 164.18 REMARK 500 LYS B 486 -31.45 -32.99 REMARK 500 ILE B 487 -63.90 -99.89 REMARK 500 MET B 505 122.48 -35.26 REMARK 500 GLU B 508 60.34 -104.46 REMARK 500 LYS B 513 -133.21 15.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 435 PRO A 436 121.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA C -3 0.07 SIDE CHAIN REMARK 500 DT C 3 0.07 SIDE CHAIN REMARK 500 DA D -8 0.07 SIDE CHAIN REMARK 500 DT D 6 0.06 SIDE CHAIN REMARK 500 ARG A 466 0.27 SIDE CHAIN REMARK 500 ARG B 466 0.14 SIDE CHAIN REMARK 500 ARG B 488 0.17 SIDE CHAIN REMARK 500 ARG B 498 0.25 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 435 16.29 REMARK 500 ALA A 437 -13.16 REMARK 500 PRO A 439 -14.03 REMARK 500 HIS A 451 11.54 REMARK 500 GLY A 453 -14.15 REMARK 500 CYS A 476 15.33 REMARK 500 TYR A 497 -13.01 REMARK 500 GLY A 504 11.23 REMARK 500 VAL B 442 12.27 REMARK 500 CYS B 450 -27.16 REMARK 500 LEU B 455 12.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 515 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 440 SG REMARK 620 2 CYS A 443 SG 108.6 REMARK 620 3 CYS A 457 SG 114.1 105.1 REMARK 620 4 CYS A 460 SG 112.8 107.9 108.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 516 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 476 SG REMARK 620 2 CYS A 482 SG 108.8 REMARK 620 3 CYS A 492 SG 107.0 119.1 REMARK 620 4 CYS A 495 SG 108.9 109.0 103.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 515 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 443 SG REMARK 620 2 CYS B 457 SG 104.6 REMARK 620 3 CYS B 460 SG 115.3 113.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 516 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 476 SG REMARK 620 2 CYS B 482 SG 108.6 REMARK 620 3 CYS B 492 SG 113.5 111.3 REMARK 620 4 CYS B 495 SG 112.0 103.8 107.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: 515 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: 516 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: 615 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: 616 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 516 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE FIRST SIX AMINO ACID RESIDUES ARE CLONAL LINKERS, THEY REMARK 999 ARE DIFFERENT FROM THE NATURAL SEQUENCE. DBREF 1GLU A 436 514 UNP P06536 GCR_RAT 436 514 DBREF 1GLU B 436 514 UNP P06536 GCR_RAT 436 514 DBREF 1GLU C -10 9 PDB 1GLU 1GLU -10 9 DBREF 1GLU D -10 9 PDB 1GLU 1GLU -10 9 SEQADV 1GLU ALA A 437 UNP P06536 PRO 437 CONFLICT SEQADV 1GLU ARG A 438 UNP P06536 LYS 438 CONFLICT SEQADV 1GLU PRO A 439 UNP P06536 LEU 439 CONFLICT SEQADV 1GLU ALA B 437 UNP P06536 PRO 437 CONFLICT SEQADV 1GLU ARG B 438 UNP P06536 LYS 438 CONFLICT SEQADV 1GLU PRO B 439 UNP P06536 LEU 439 CONFLICT SEQRES 1 C 19 DC DC DA DG DA DA DC DA DT DC DG DA DT SEQRES 2 C 19 DG DT DT DC DT DG SEQRES 1 D 19 DC DC DA DG DA DA DC DA DT DC DG DA DT SEQRES 2 D 19 DG DT DT DC DT DG SEQRES 1 A 81 MET LYS PRO ALA ARG PRO CYS LEU VAL CYS SER ASP GLU SEQRES 2 A 81 ALA SER GLY CYS HIS TYR GLY VAL LEU THR CYS GLY SER SEQRES 3 A 81 CYS LYS VAL PHE PHE LYS ARG ALA VAL GLU GLY GLN HIS SEQRES 4 A 81 ASN TYR LEU CYS ALA GLY ARG ASN ASP CYS ILE ILE ASP SEQRES 5 A 81 LYS ILE ARG ARG LYS ASN CYS PRO ALA CYS ARG TYR ARG SEQRES 6 A 81 LYS CYS LEU GLN ALA GLY MET ASN LEU GLU ALA ARG LYS SEQRES 7 A 81 THR LYS LYS SEQRES 1 B 81 MET LYS PRO ALA ARG PRO CYS LEU VAL CYS SER ASP GLU SEQRES 2 B 81 ALA SER GLY CYS HIS TYR GLY VAL LEU THR CYS GLY SER SEQRES 3 B 81 CYS LYS VAL PHE PHE LYS ARG ALA VAL GLU GLY GLN HIS SEQRES 4 B 81 ASN TYR LEU CYS ALA GLY ARG ASN ASP CYS ILE ILE ASP SEQRES 5 B 81 LYS ILE ARG ARG LYS ASN CYS PRO ALA CYS ARG TYR ARG SEQRES 6 B 81 LYS CYS LEU GLN ALA GLY MET ASN LEU GLU ALA ARG LYS SEQRES 7 B 81 THR LYS LYS HET ZN A 515 1 HET ZN A 516 1 HET ZN B 515 1 HET ZN B 516 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *41(H2 O) HELIX 1 1 CYS A 457 GLU A 469 1 13 HELIX 2 2 LYS A 486 ASN A 491 1IRREGULAR, ALPHA-LIKE 6 HELIX 3 3 CYS A 492 ALA A 503 1 12 HELIX 4 4 CYS B 457 GLU B 469 1 13 HELIX 5 5 LYS B 486 ASN B 491 1IRREGULAR, ALPHA-LIKE 6 HELIX 6 6 CYS B 492 ALA B 503 1 12 SHEET 1 A 2 GLY A 449 CYS A 450 0 SHEET 2 A 2 LEU A 455 THR A 456 -1 N THR A 456 O GLY A 449 SHEET 1 B 2 GLY B 449 HIS B 451 0 SHEET 2 B 2 VAL B 454 THR B 456 -1 N VAL B 454 O HIS B 451 LINK SG CYS A 440 ZN ZN A 515 1555 1555 2.24 LINK SG CYS A 443 ZN ZN A 515 1555 1555 2.39 LINK SG CYS A 457 ZN ZN A 515 1555 1555 2.34 LINK SG CYS A 460 ZN ZN A 515 1555 1555 2.31 LINK SG CYS A 476 ZN ZN A 516 1555 1555 2.42 LINK SG CYS A 482 ZN ZN A 516 1555 1555 2.15 LINK SG CYS A 492 ZN ZN A 516 1555 1555 2.27 LINK SG CYS A 495 ZN ZN A 516 1555 1555 2.48 LINK SG CYS B 443 ZN ZN B 515 1555 1555 2.22 LINK SG CYS B 457 ZN ZN B 515 1555 1555 2.27 LINK SG CYS B 460 ZN ZN B 515 1555 1555 2.25 LINK SG CYS B 476 ZN ZN B 516 1555 1555 2.25 LINK SG CYS B 482 ZN ZN B 516 1555 1555 2.28 LINK SG CYS B 492 ZN ZN B 516 1555 1555 2.26 LINK SG CYS B 495 ZN ZN B 516 1555 1555 2.43 SITE 1 515 4 CYS A 440 CYS A 443 CYS A 457 CYS A 460 SITE 1 516 4 CYS A 476 CYS A 482 CYS A 492 CYS A 495 SITE 1 615 4 CYS B 440 CYS B 443 CYS B 457 CYS B 460 SITE 1 616 4 CYS B 476 CYS B 482 CYS B 492 CYS B 495 SITE 1 AC1 4 CYS A 440 CYS A 443 CYS A 457 CYS A 460 SITE 1 AC2 4 CYS A 476 CYS A 482 CYS A 492 CYS A 495 SITE 1 AC3 4 CYS B 440 CYS B 443 CYS B 457 CYS B 460 SITE 1 AC4 4 CYS B 476 CYS B 482 CYS B 492 CYS B 495 CRYST1 38.500 95.700 120.500 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025974 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010449 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008299 0.00000