data_1GP0 # _entry.id 1GP0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.305 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1GP0 PDBE EBI-8775 WWPDB D_1290008775 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1E6F unspecified 'HUMAN MIR-RECEPTOR, REPEAT 11' PDB 1GP3 unspecified 'STRUCTURE OF A FUNCTIONAL IGF2R FRAGMENT DETERMINED FROM ANOMALOUS SCATTERING OF SULPHUR' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1GP0 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2001-10-29 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Brown, J.' 1 'Esnouf, R.M.' 2 'Jones, M.A.' 3 'Linnell, J.' 4 'Harlos, K.' 5 'Hassan, A.B.' 6 'Jones, E.Y.' 7 # _citation.id primary _citation.title 'Structure of a Functional Igf2R Fragment Determined from the Anomalous Scattering of Sulfur' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 21 _citation.page_first 1054 _citation.page_last ? _citation.year 2002 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11867533 _citation.pdbx_database_id_DOI 10.1093/EMBOJ/21.5.1054 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Brown, J.' 1 ? primary 'Esnouf, R.M.' 2 ? primary 'Jones, M.A.' 3 ? primary 'Linnell, J.' 4 ? primary 'Harlos, K.' 5 ? primary 'Hassan, A.B.' 6 ? primary 'Jones, E.Y.' 7 ? # _cell.entry_id 1GP0 _cell.length_a 49.405 _cell.length_b 49.405 _cell.length_c 118.540 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GP0 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CATION-INDEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR' 15564.672 1 ? ? 'IGF-II-BINDING DOMAIN, REPEAT 11 RESIDUES 1508-1650' 'RESIDUES VISIBLE IN THE ELECTRON DENSITY MAP CORRESPOND TO MATURE IGF2R RESIDUE NUMBERS 1515 -1647' 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 179 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'INSULIN-LIKE GROWTH FACTOR II RECEPTOR, CI MAN-6-P, RECEPTOR, CI-MPR, 300 KDA MANNOSE 6-PHOSPHATE RECEPTOR, MPR 300, MPR300' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MKSNEHDDCQVTNPSTGHLFDLSSLSGRAGFTAAYSEKGLVYMSICGENENCPPGVGACFGQTRISVGKANKRLRYVDQV LQLVYKDGSPCPSKSGLSYKSVISFVCRPEAGPTNRPMLISLDKQTCTLFFSWHTPLACEQAT ; _entity_poly.pdbx_seq_one_letter_code_can ;MKSNEHDDCQVTNPSTGHLFDLSSLSGRAGFTAAYSEKGLVYMSICGENENCPPGVGACFGQTRISVGKANKRLRYVDQV LQLVYKDGSPCPSKSGLSYKSVISFVCRPEAGPTNRPMLISLDKQTCTLFFSWHTPLACEQAT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 SER n 1 4 ASN n 1 5 GLU n 1 6 HIS n 1 7 ASP n 1 8 ASP n 1 9 CYS n 1 10 GLN n 1 11 VAL n 1 12 THR n 1 13 ASN n 1 14 PRO n 1 15 SER n 1 16 THR n 1 17 GLY n 1 18 HIS n 1 19 LEU n 1 20 PHE n 1 21 ASP n 1 22 LEU n 1 23 SER n 1 24 SER n 1 25 LEU n 1 26 SER n 1 27 GLY n 1 28 ARG n 1 29 ALA n 1 30 GLY n 1 31 PHE n 1 32 THR n 1 33 ALA n 1 34 ALA n 1 35 TYR n 1 36 SER n 1 37 GLU n 1 38 LYS n 1 39 GLY n 1 40 LEU n 1 41 VAL n 1 42 TYR n 1 43 MET n 1 44 SER n 1 45 ILE n 1 46 CYS n 1 47 GLY n 1 48 GLU n 1 49 ASN n 1 50 GLU n 1 51 ASN n 1 52 CYS n 1 53 PRO n 1 54 PRO n 1 55 GLY n 1 56 VAL n 1 57 GLY n 1 58 ALA n 1 59 CYS n 1 60 PHE n 1 61 GLY n 1 62 GLN n 1 63 THR n 1 64 ARG n 1 65 ILE n 1 66 SER n 1 67 VAL n 1 68 GLY n 1 69 LYS n 1 70 ALA n 1 71 ASN n 1 72 LYS n 1 73 ARG n 1 74 LEU n 1 75 ARG n 1 76 TYR n 1 77 VAL n 1 78 ASP n 1 79 GLN n 1 80 VAL n 1 81 LEU n 1 82 GLN n 1 83 LEU n 1 84 VAL n 1 85 TYR n 1 86 LYS n 1 87 ASP n 1 88 GLY n 1 89 SER n 1 90 PRO n 1 91 CYS n 1 92 PRO n 1 93 SER n 1 94 LYS n 1 95 SER n 1 96 GLY n 1 97 LEU n 1 98 SER n 1 99 TYR n 1 100 LYS n 1 101 SER n 1 102 VAL n 1 103 ILE n 1 104 SER n 1 105 PHE n 1 106 VAL n 1 107 CYS n 1 108 ARG n 1 109 PRO n 1 110 GLU n 1 111 ALA n 1 112 GLY n 1 113 PRO n 1 114 THR n 1 115 ASN n 1 116 ARG n 1 117 PRO n 1 118 MET n 1 119 LEU n 1 120 ILE n 1 121 SER n 1 122 LEU n 1 123 ASP n 1 124 LYS n 1 125 GLN n 1 126 THR n 1 127 CYS n 1 128 THR n 1 129 LEU n 1 130 PHE n 1 131 PHE n 1 132 SER n 1 133 TRP n 1 134 HIS n 1 135 THR n 1 136 PRO n 1 137 LEU n 1 138 ALA n 1 139 CYS n 1 140 GLU n 1 141 GLN n 1 142 ALA n 1 143 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue PLACENTA _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 95661 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant Origami _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET22B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MPRI_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P11717 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1GP0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 143 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P11717 _struct_ref_seq.db_align_beg 1508 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1650 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1508 _struct_ref_seq.pdbx_auth_seq_align_end 1650 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1GP0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_percent_sol 42 _exptl_crystal.description 'SULFUR PHASING DATA COLLECTED AT 1.77122 A ON ESRF BM14' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.50 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PROTEIN WAS CRYSTALLIZED FROM 0.2 M LITHIUM SULFATE, 0.1 M TRIS HCL PH 8.5, 30 % PEG 4000' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2000-11-15 _diffrn_detector.details 'TOROIDAL MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DIAMOND (111), GE(220)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.933 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-2 _diffrn_source.pdbx_wavelength 0.933 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1GP0 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 1.400 _reflns.number_obs 29550 _reflns.number_all ? _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs 0.09700 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 35.7000 _reflns.B_iso_Wilson_estimate 18.5 _reflns.pdbx_redundancy 25.800 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.40 _reflns_shell.d_res_low 1.45 _reflns_shell.percent_possible_all 95.6 _reflns_shell.Rmerge_I_obs 0.45200 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 9.400 _reflns_shell.pdbx_redundancy ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1GP0 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 28735 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 764785.89 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.62 _refine.ls_d_res_high 1.40 _refine.ls_percent_reflns_obs 96.4 _refine.ls_R_factor_obs 0.209 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.209 _refine.ls_R_factor_R_free 0.237 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 1402 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 22.5 _refine.aniso_B[1][1] -1.36 _refine.aniso_B[2][2] -1.36 _refine.aniso_B[3][3] 2.73 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.387586 _refine.solvent_model_param_bsol 38.7082 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1GP0 _refine_analyze.Luzzati_coordinate_error_obs 0.16 _refine_analyze.Luzzati_sigma_a_obs 0.04 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.18 _refine_analyze.Luzzati_sigma_a_free 0.02 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1006 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 179 _refine_hist.number_atoms_total 1190 _refine_hist.d_res_high 1.40 _refine_hist.d_res_low 19.62 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.013 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.7 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 26.7 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.21 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 2.73 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 3.60 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 4.77 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 5.91 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.40 _refine_ls_shell.d_res_low 1.49 _refine_ls_shell.number_reflns_R_work 4227 _refine_ls_shell.R_factor_R_work 0.227 _refine_ls_shell.percent_reflns_obs 91.7 _refine_ls_shell.R_factor_R_free 0.261 _refine_ls_shell.R_factor_R_free_error 0.017 _refine_ls_shell.percent_reflns_R_free 5.2 _refine_ls_shell.number_reflns_R_free 230 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM ? 'X-RAY DIFFRACTION' 3 ION.PARAM ? # _struct.entry_id 1GP0 _struct.title 'Human IGF2R domain 11' _struct.pdbx_descriptor 'CATION-INDEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1GP0 _struct_keywords.pdbx_keywords RECEPTOR _struct_keywords.text 'RECEPTOR, INSULIN-LIKE GROWTH FACTOR, CATION INDEPENDENT MANNOSE 6-PHOSPHATE, TRANSPORT, BETA BARREL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 23 ? LEU A 25 ? SER A 1530 LEU A 1532 5 ? 3 HELX_P HELX_P2 2 PRO A 136 ? CYS A 139 ? PRO A 1643 CYS A 1646 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 46 SG ? ? A CYS 1516 A CYS 1553 1_555 ? ? ? ? ? ? ? 2.049 ? disulf2 disulf ? ? A CYS 52 SG ? ? ? 1_555 A CYS 59 SG ? ? A CYS 1559 A CYS 1566 1_555 ? ? ? ? ? ? ? 2.138 ? disulf3 disulf ? ? A CYS 91 SG ? ? ? 1_555 A CYS 127 SG ? ? A CYS 1598 A CYS 1634 1_555 ? ? ? ? ? ? ? 2.017 ? disulf4 disulf ? ? A CYS 107 SG ? ? ? 1_555 A CYS 139 SG ? ? A CYS 1614 A CYS 1646 1_555 ? ? ? ? ? ? ? 2.059 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 3 ? AC ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AC 1 2 ? anti-parallel AC 2 3 ? anti-parallel AC 3 4 ? parallel AC 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLN A 10 ? THR A 12 ? GLN A 1517 THR A 1519 AA 2 LEU A 19 ? ASP A 21 ? LEU A 1526 ASP A 1528 AB 1 PHE A 31 ? TYR A 35 ? PHE A 1538 TYR A 1542 AB 2 GLY A 39 ? MET A 43 ? GLY A 1546 MET A 1550 AB 3 ALA A 58 ? PHE A 60 ? ALA A 1565 PHE A 1567 AC 1 ARG A 75 ? VAL A 77 ? ARG A 1582 VAL A 1584 AC 2 VAL A 80 ? TYR A 85 ? VAL A 1587 TYR A 1592 AC 3 LYS A 100 ? CYS A 107 ? LYS A 1607 CYS A 1614 AC 4 THR A 128 ? THR A 135 ? THR A 1635 THR A 1642 AC 5 MET A 118 ? ASP A 123 ? MET A 1625 ASP A 1630 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 11 ? N VAL A 1518 O PHE A 20 ? O PHE A 1527 AB 1 2 N TYR A 35 ? N TYR A 1542 O GLY A 39 ? O GLY A 1546 AB 2 3 N TYR A 42 ? N TYR A 1549 O CYS A 59 ? O CYS A 1566 AC 1 2 N VAL A 77 ? N VAL A 1584 O VAL A 80 ? O VAL A 1587 AC 2 3 N TYR A 85 ? N TYR A 1592 O SER A 101 ? O SER A 1608 AC 3 4 N VAL A 102 ? N VAL A 1609 O LEU A 129 ? O LEU A 1636 AC 4 5 N SER A 132 ? N SER A 1639 O MET A 118 ? O MET A 1625 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A3001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ARG A 108 ? ARG A 1615 . ? 1_555 ? 2 AC1 6 GLY A 112 ? GLY A 1619 . ? 1_555 ? 3 AC1 6 PRO A 113 ? PRO A 1620 . ? 1_555 ? 4 AC1 6 THR A 114 ? THR A 1621 . ? 1_555 ? 5 AC1 6 ASN A 115 ? ASN A 1622 . ? 1_555 ? 6 AC1 6 HOH C . ? HOH A 2179 . ? 1_555 ? # _database_PDB_matrix.entry_id 1GP0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1GP0 _atom_sites.fract_transf_matrix[1][1] 0.020241 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020241 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008436 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1508 ? ? ? A . n A 1 2 LYS 2 1509 ? ? ? A . n A 1 3 SER 3 1510 ? ? ? A . n A 1 4 ASN 4 1511 ? ? ? A . n A 1 5 GLU 5 1512 ? ? ? A . n A 1 6 HIS 6 1513 ? ? ? A . n A 1 7 ASP 7 1514 ? ? ? A . n A 1 8 ASP 8 1515 1515 ASP ASP A . n A 1 9 CYS 9 1516 1516 CYS CYS A . n A 1 10 GLN 10 1517 1517 GLN GLN A . n A 1 11 VAL 11 1518 1518 VAL VAL A . n A 1 12 THR 12 1519 1519 THR THR A . n A 1 13 ASN 13 1520 1520 ASN ASN A . n A 1 14 PRO 14 1521 1521 PRO PRO A . n A 1 15 SER 15 1522 1522 SER SER A . n A 1 16 THR 16 1523 1523 THR THR A . n A 1 17 GLY 17 1524 1524 GLY GLY A . n A 1 18 HIS 18 1525 1525 HIS HIS A . n A 1 19 LEU 19 1526 1526 LEU LEU A . n A 1 20 PHE 20 1527 1527 PHE PHE A . n A 1 21 ASP 21 1528 1528 ASP ASP A . n A 1 22 LEU 22 1529 1529 LEU LEU A . n A 1 23 SER 23 1530 1530 SER SER A . n A 1 24 SER 24 1531 1531 SER SER A . n A 1 25 LEU 25 1532 1532 LEU LEU A . n A 1 26 SER 26 1533 1533 SER SER A . n A 1 27 GLY 27 1534 1534 GLY GLY A . n A 1 28 ARG 28 1535 1535 ARG ARG A . n A 1 29 ALA 29 1536 1536 ALA ALA A . n A 1 30 GLY 30 1537 1537 GLY GLY A . n A 1 31 PHE 31 1538 1538 PHE PHE A . n A 1 32 THR 32 1539 1539 THR THR A . n A 1 33 ALA 33 1540 1540 ALA ALA A . n A 1 34 ALA 34 1541 1541 ALA ALA A . n A 1 35 TYR 35 1542 1542 TYR TYR A . n A 1 36 SER 36 1543 1543 SER SER A . n A 1 37 GLU 37 1544 1544 GLU GLU A . n A 1 38 LYS 38 1545 1545 LYS LYS A . n A 1 39 GLY 39 1546 1546 GLY GLY A . n A 1 40 LEU 40 1547 1547 LEU LEU A . n A 1 41 VAL 41 1548 1548 VAL VAL A . n A 1 42 TYR 42 1549 1549 TYR TYR A . n A 1 43 MET 43 1550 1550 MET MET A . n A 1 44 SER 44 1551 1551 SER SER A . n A 1 45 ILE 45 1552 1552 ILE ILE A . n A 1 46 CYS 46 1553 1553 CYS CYS A . n A 1 47 GLY 47 1554 1554 GLY GLY A . n A 1 48 GLU 48 1555 1555 GLU GLU A . n A 1 49 ASN 49 1556 1556 ASN ASN A . n A 1 50 GLU 50 1557 1557 GLU GLU A . n A 1 51 ASN 51 1558 1558 ASN ASN A . n A 1 52 CYS 52 1559 1559 CYS CYS A . n A 1 53 PRO 53 1560 1560 PRO PRO A . n A 1 54 PRO 54 1561 1561 PRO PRO A . n A 1 55 GLY 55 1562 1562 GLY GLY A . n A 1 56 VAL 56 1563 1563 VAL VAL A . n A 1 57 GLY 57 1564 1564 GLY GLY A . n A 1 58 ALA 58 1565 1565 ALA ALA A . n A 1 59 CYS 59 1566 1566 CYS CYS A . n A 1 60 PHE 60 1567 1567 PHE PHE A . n A 1 61 GLY 61 1568 1568 GLY GLY A . n A 1 62 GLN 62 1569 1569 GLN GLN A . n A 1 63 THR 63 1570 1570 THR THR A . n A 1 64 ARG 64 1571 1571 ARG ARG A . n A 1 65 ILE 65 1572 1572 ILE ILE A . n A 1 66 SER 66 1573 1573 SER SER A . n A 1 67 VAL 67 1574 1574 VAL VAL A . n A 1 68 GLY 68 1575 1575 GLY GLY A . n A 1 69 LYS 69 1576 1576 LYS LYS A . n A 1 70 ALA 70 1577 1577 ALA ALA A . n A 1 71 ASN 71 1578 1578 ASN ASN A . n A 1 72 LYS 72 1579 1579 LYS LYS A . n A 1 73 ARG 73 1580 1580 ARG ARG A . n A 1 74 LEU 74 1581 1581 LEU LEU A . n A 1 75 ARG 75 1582 1582 ARG ARG A . n A 1 76 TYR 76 1583 1583 TYR TYR A . n A 1 77 VAL 77 1584 1584 VAL VAL A . n A 1 78 ASP 78 1585 1585 ASP ASP A . n A 1 79 GLN 79 1586 1586 GLN GLN A . n A 1 80 VAL 80 1587 1587 VAL VAL A . n A 1 81 LEU 81 1588 1588 LEU LEU A . n A 1 82 GLN 82 1589 1589 GLN GLN A . n A 1 83 LEU 83 1590 1590 LEU LEU A . n A 1 84 VAL 84 1591 1591 VAL VAL A . n A 1 85 TYR 85 1592 1592 TYR TYR A . n A 1 86 LYS 86 1593 1593 LYS LYS A . n A 1 87 ASP 87 1594 1594 ASP ASP A . n A 1 88 GLY 88 1595 1595 GLY GLY A . n A 1 89 SER 89 1596 1596 SER SER A . n A 1 90 PRO 90 1597 1597 PRO PRO A . n A 1 91 CYS 91 1598 1598 CYS CYS A . n A 1 92 PRO 92 1599 1599 PRO PRO A . n A 1 93 SER 93 1600 1600 SER SER A . n A 1 94 LYS 94 1601 1601 LYS LYS A . n A 1 95 SER 95 1602 1602 SER SER A . n A 1 96 GLY 96 1603 1603 GLY GLY A . n A 1 97 LEU 97 1604 1604 LEU LEU A . n A 1 98 SER 98 1605 1605 SER SER A . n A 1 99 TYR 99 1606 1606 TYR TYR A . n A 1 100 LYS 100 1607 1607 LYS LYS A . n A 1 101 SER 101 1608 1608 SER SER A . n A 1 102 VAL 102 1609 1609 VAL VAL A . n A 1 103 ILE 103 1610 1610 ILE ILE A . n A 1 104 SER 104 1611 1611 SER SER A . n A 1 105 PHE 105 1612 1612 PHE PHE A . n A 1 106 VAL 106 1613 1613 VAL VAL A . n A 1 107 CYS 107 1614 1614 CYS CYS A . n A 1 108 ARG 108 1615 1615 ARG ARG A . n A 1 109 PRO 109 1616 1616 PRO PRO A . n A 1 110 GLU 110 1617 1617 GLU GLU A . n A 1 111 ALA 111 1618 1618 ALA ALA A . n A 1 112 GLY 112 1619 1619 GLY GLY A . n A 1 113 PRO 113 1620 1620 PRO PRO A . n A 1 114 THR 114 1621 1621 THR THR A . n A 1 115 ASN 115 1622 1622 ASN ASN A . n A 1 116 ARG 116 1623 1623 ARG ARG A . n A 1 117 PRO 117 1624 1624 PRO PRO A . n A 1 118 MET 118 1625 1625 MET MET A . n A 1 119 LEU 119 1626 1626 LEU LEU A . n A 1 120 ILE 120 1627 1627 ILE ILE A . n A 1 121 SER 121 1628 1628 SER SER A . n A 1 122 LEU 122 1629 1629 LEU LEU A . n A 1 123 ASP 123 1630 1630 ASP ASP A . n A 1 124 LYS 124 1631 1631 LYS LYS A . n A 1 125 GLN 125 1632 1632 GLN GLN A . n A 1 126 THR 126 1633 1633 THR THR A . n A 1 127 CYS 127 1634 1634 CYS CYS A . n A 1 128 THR 128 1635 1635 THR THR A . n A 1 129 LEU 129 1636 1636 LEU LEU A . n A 1 130 PHE 130 1637 1637 PHE PHE A . n A 1 131 PHE 131 1638 1638 PHE PHE A . n A 1 132 SER 132 1639 1639 SER SER A . n A 1 133 TRP 133 1640 1640 TRP TRP A . n A 1 134 HIS 134 1641 1641 HIS HIS A . n A 1 135 THR 135 1642 1642 THR THR A . n A 1 136 PRO 136 1643 1643 PRO PRO A . n A 1 137 LEU 137 1644 1644 LEU LEU A . n A 1 138 ALA 138 1645 1645 ALA ALA A . n A 1 139 CYS 139 1646 1646 CYS CYS A . n A 1 140 GLU 140 1647 1647 GLU GLU A . n A 1 141 GLN 141 1648 ? ? ? A . n A 1 142 ALA 142 1649 ? ? ? A . n A 1 143 THR 143 1650 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 3001 3001 SO4 SO4 A . C 3 HOH 1 2001 2001 HOH HOH A . C 3 HOH 2 2002 2002 HOH HOH A . C 3 HOH 3 2003 2003 HOH HOH A . C 3 HOH 4 2004 2004 HOH HOH A . C 3 HOH 5 2005 2005 HOH HOH A . C 3 HOH 6 2006 2006 HOH HOH A . C 3 HOH 7 2007 2007 HOH HOH A . C 3 HOH 8 2008 2008 HOH HOH A . C 3 HOH 9 2009 2009 HOH HOH A . C 3 HOH 10 2010 2010 HOH HOH A . C 3 HOH 11 2011 2011 HOH HOH A . C 3 HOH 12 2012 2012 HOH HOH A . C 3 HOH 13 2013 2013 HOH HOH A . C 3 HOH 14 2014 2014 HOH HOH A . C 3 HOH 15 2015 2015 HOH HOH A . C 3 HOH 16 2016 2016 HOH HOH A . C 3 HOH 17 2017 2017 HOH HOH A . C 3 HOH 18 2018 2018 HOH HOH A . C 3 HOH 19 2019 2019 HOH HOH A . C 3 HOH 20 2020 2020 HOH HOH A . C 3 HOH 21 2021 2021 HOH HOH A . C 3 HOH 22 2022 2022 HOH HOH A . C 3 HOH 23 2023 2023 HOH HOH A . C 3 HOH 24 2024 2024 HOH HOH A . C 3 HOH 25 2025 2025 HOH HOH A . C 3 HOH 26 2026 2026 HOH HOH A . C 3 HOH 27 2027 2027 HOH HOH A . C 3 HOH 28 2028 2028 HOH HOH A . C 3 HOH 29 2029 2029 HOH HOH A . C 3 HOH 30 2030 2030 HOH HOH A . C 3 HOH 31 2031 2031 HOH HOH A . C 3 HOH 32 2032 2032 HOH HOH A . C 3 HOH 33 2033 2033 HOH HOH A . C 3 HOH 34 2034 2034 HOH HOH A . C 3 HOH 35 2035 2035 HOH HOH A . C 3 HOH 36 2036 2036 HOH HOH A . C 3 HOH 37 2037 2037 HOH HOH A . C 3 HOH 38 2038 2038 HOH HOH A . C 3 HOH 39 2039 2039 HOH HOH A . C 3 HOH 40 2040 2040 HOH HOH A . C 3 HOH 41 2041 2041 HOH HOH A . C 3 HOH 42 2042 2042 HOH HOH A . C 3 HOH 43 2043 2043 HOH HOH A . C 3 HOH 44 2044 2044 HOH HOH A . C 3 HOH 45 2045 2045 HOH HOH A . C 3 HOH 46 2046 2046 HOH HOH A . C 3 HOH 47 2047 2047 HOH HOH A . C 3 HOH 48 2048 2048 HOH HOH A . C 3 HOH 49 2049 2049 HOH HOH A . C 3 HOH 50 2050 2050 HOH HOH A . C 3 HOH 51 2051 2051 HOH HOH A . C 3 HOH 52 2052 2052 HOH HOH A . C 3 HOH 53 2053 2053 HOH HOH A . C 3 HOH 54 2054 2054 HOH HOH A . C 3 HOH 55 2055 2055 HOH HOH A . C 3 HOH 56 2056 2056 HOH HOH A . C 3 HOH 57 2057 2057 HOH HOH A . C 3 HOH 58 2058 2058 HOH HOH A . C 3 HOH 59 2059 2059 HOH HOH A . C 3 HOH 60 2060 2060 HOH HOH A . C 3 HOH 61 2061 2061 HOH HOH A . C 3 HOH 62 2062 2062 HOH HOH A . C 3 HOH 63 2063 2063 HOH HOH A . C 3 HOH 64 2064 2064 HOH HOH A . C 3 HOH 65 2065 2065 HOH HOH A . C 3 HOH 66 2066 2066 HOH HOH A . C 3 HOH 67 2067 2067 HOH HOH A . C 3 HOH 68 2068 2068 HOH HOH A . C 3 HOH 69 2069 2069 HOH HOH A . C 3 HOH 70 2070 2070 HOH HOH A . C 3 HOH 71 2071 2071 HOH HOH A . C 3 HOH 72 2072 2072 HOH HOH A . C 3 HOH 73 2073 2073 HOH HOH A . C 3 HOH 74 2074 2074 HOH HOH A . C 3 HOH 75 2075 2075 HOH HOH A . C 3 HOH 76 2076 2076 HOH HOH A . C 3 HOH 77 2077 2077 HOH HOH A . C 3 HOH 78 2078 2078 HOH HOH A . C 3 HOH 79 2079 2079 HOH HOH A . C 3 HOH 80 2080 2080 HOH HOH A . C 3 HOH 81 2081 2081 HOH HOH A . C 3 HOH 82 2082 2082 HOH HOH A . C 3 HOH 83 2083 2083 HOH HOH A . C 3 HOH 84 2084 2084 HOH HOH A . C 3 HOH 85 2085 2085 HOH HOH A . C 3 HOH 86 2086 2086 HOH HOH A . C 3 HOH 87 2087 2087 HOH HOH A . C 3 HOH 88 2088 2088 HOH HOH A . C 3 HOH 89 2089 2089 HOH HOH A . C 3 HOH 90 2090 2090 HOH HOH A . C 3 HOH 91 2091 2091 HOH HOH A . C 3 HOH 92 2092 2092 HOH HOH A . C 3 HOH 93 2093 2093 HOH HOH A . C 3 HOH 94 2094 2094 HOH HOH A . C 3 HOH 95 2095 2095 HOH HOH A . C 3 HOH 96 2096 2096 HOH HOH A . C 3 HOH 97 2097 2097 HOH HOH A . C 3 HOH 98 2098 2098 HOH HOH A . C 3 HOH 99 2099 2099 HOH HOH A . C 3 HOH 100 2100 2100 HOH HOH A . C 3 HOH 101 2101 2101 HOH HOH A . C 3 HOH 102 2102 2102 HOH HOH A . C 3 HOH 103 2103 2103 HOH HOH A . C 3 HOH 104 2104 2104 HOH HOH A . C 3 HOH 105 2105 2105 HOH HOH A . C 3 HOH 106 2106 2106 HOH HOH A . C 3 HOH 107 2107 2107 HOH HOH A . C 3 HOH 108 2108 2108 HOH HOH A . C 3 HOH 109 2109 2109 HOH HOH A . C 3 HOH 110 2110 2110 HOH HOH A . C 3 HOH 111 2111 2111 HOH HOH A . C 3 HOH 112 2112 2112 HOH HOH A . C 3 HOH 113 2113 2113 HOH HOH A . C 3 HOH 114 2114 2114 HOH HOH A . C 3 HOH 115 2115 2115 HOH HOH A . C 3 HOH 116 2116 2116 HOH HOH A . C 3 HOH 117 2117 2117 HOH HOH A . C 3 HOH 118 2118 2118 HOH HOH A . C 3 HOH 119 2119 2119 HOH HOH A . C 3 HOH 120 2120 2120 HOH HOH A . C 3 HOH 121 2121 2121 HOH HOH A . C 3 HOH 122 2122 2122 HOH HOH A . C 3 HOH 123 2123 2123 HOH HOH A . C 3 HOH 124 2124 2124 HOH HOH A . C 3 HOH 125 2125 2125 HOH HOH A . C 3 HOH 126 2126 2126 HOH HOH A . C 3 HOH 127 2127 2127 HOH HOH A . C 3 HOH 128 2128 2128 HOH HOH A . C 3 HOH 129 2129 2129 HOH HOH A . C 3 HOH 130 2130 2130 HOH HOH A . C 3 HOH 131 2131 2131 HOH HOH A . C 3 HOH 132 2132 2132 HOH HOH A . C 3 HOH 133 2133 2133 HOH HOH A . C 3 HOH 134 2134 2134 HOH HOH A . C 3 HOH 135 2135 2135 HOH HOH A . C 3 HOH 136 2136 2136 HOH HOH A . C 3 HOH 137 2137 2137 HOH HOH A . C 3 HOH 138 2138 2138 HOH HOH A . C 3 HOH 139 2139 2139 HOH HOH A . C 3 HOH 140 2140 2140 HOH HOH A . C 3 HOH 141 2141 2141 HOH HOH A . C 3 HOH 142 2142 2142 HOH HOH A . C 3 HOH 143 2143 2143 HOH HOH A . C 3 HOH 144 2144 2144 HOH HOH A . C 3 HOH 145 2145 2145 HOH HOH A . C 3 HOH 146 2146 2146 HOH HOH A . C 3 HOH 147 2147 2147 HOH HOH A . C 3 HOH 148 2148 2148 HOH HOH A . C 3 HOH 149 2149 2149 HOH HOH A . C 3 HOH 150 2150 2150 HOH HOH A . C 3 HOH 151 2151 2151 HOH HOH A . C 3 HOH 152 2152 2152 HOH HOH A . C 3 HOH 153 2153 2153 HOH HOH A . C 3 HOH 154 2154 2154 HOH HOH A . C 3 HOH 155 2155 2155 HOH HOH A . C 3 HOH 156 2156 2156 HOH HOH A . C 3 HOH 157 2157 2157 HOH HOH A . C 3 HOH 158 2158 2158 HOH HOH A . C 3 HOH 159 2159 2159 HOH HOH A . C 3 HOH 160 2160 2160 HOH HOH A . C 3 HOH 161 2161 2161 HOH HOH A . C 3 HOH 162 2162 2162 HOH HOH A . C 3 HOH 163 2163 2163 HOH HOH A . C 3 HOH 164 2164 2164 HOH HOH A . C 3 HOH 165 2165 2165 HOH HOH A . C 3 HOH 166 2166 2166 HOH HOH A . C 3 HOH 167 2167 2167 HOH HOH A . C 3 HOH 168 2168 2168 HOH HOH A . C 3 HOH 169 2169 2169 HOH HOH A . C 3 HOH 170 2170 2170 HOH HOH A . C 3 HOH 171 2171 2171 HOH HOH A . C 3 HOH 172 2172 2172 HOH HOH A . C 3 HOH 173 2173 2173 HOH HOH A . C 3 HOH 174 2174 2174 HOH HOH A . C 3 HOH 175 2175 2175 HOH HOH A . C 3 HOH 176 2176 2176 HOH HOH A . C 3 HOH 177 2177 2177 HOH HOH A . C 3 HOH 178 2178 2178 HOH HOH A . C 3 HOH 179 2179 2179 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-02-28 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-07-05 5 'Structure model' 1 4 2019-04-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_PDB_rev 3 5 'Structure model' database_PDB_rev_record 4 5 'Structure model' entity_src_gen 5 5 'Structure model' struct_biol # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_entity_src_gen.pdbx_host_org_cell_line' 3 5 'Structure model' '_entity_src_gen.pdbx_host_org_variant' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SnB phasing . ? 4 # _pdbx_entry_details.entry_id 1GP0 _pdbx_entry_details.compound_details ;TRANSPORT OF PHOSPHORYLATED LYSOSOMAL ENZYMES FROM THE GOLGI COMPLEX AND THE CELL SURFACE TO LYSOSOMES. LYSOSOMAL ENZYMES BEARING PHOSPHOMANNOSYL RESIDUES BIND SPECIFICALLY TO MANNOSE-6-PHOSPHATE RECEPTORS IN THE GOLGI APPARATUS AND THE RESULTING RECEPTOR-LIGAND COMPLEX IS TRANSPORTED TO AN ACIDIC PRELYOSOMAL COMPARTMENT WHERE THE LOW PH MEDIATES THE DISSOCIATION OF THE COMPLEX. THIS RECEPTOR ALSO BINDS INSULIN GROWTH FACTOR II. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 2020 ? ? 1_555 O A HOH 2170 ? ? 6_455 2.01 2 1 O A HOH 2022 ? ? 1_555 O A HOH 2041 ? ? 4_555 2.09 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CG _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 MET _pdbx_validate_rmsd_angle.auth_seq_id_1 1550 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 SD _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 MET _pdbx_validate_rmsd_angle.auth_seq_id_2 1550 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CE _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 MET _pdbx_validate_rmsd_angle.auth_seq_id_3 1550 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 89.95 _pdbx_validate_rmsd_angle.angle_target_value 100.20 _pdbx_validate_rmsd_angle.angle_deviation -10.25 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 1543 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 56.45 _pdbx_validate_torsion.psi -153.29 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 2026 ? 6.19 . 2 1 O ? A HOH 2029 ? 6.71 . 3 1 O ? A HOH 2031 ? 7.00 . 4 1 O ? A HOH 2033 ? 5.81 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1508 ? A MET 1 2 1 Y 1 A LYS 1509 ? A LYS 2 3 1 Y 1 A SER 1510 ? A SER 3 4 1 Y 1 A ASN 1511 ? A ASN 4 5 1 Y 1 A GLU 1512 ? A GLU 5 6 1 Y 1 A HIS 1513 ? A HIS 6 7 1 Y 1 A ASP 1514 ? A ASP 7 8 1 Y 1 A GLN 1648 ? A GLN 141 9 1 Y 1 A ALA 1649 ? A ALA 142 10 1 Y 1 A THR 1650 ? A THR 143 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #