HEADER OXIDOREDUCTASE(H2O2(A)) 11-JUN-85 1GP1 TITLE THE REFINED STRUCTURE OF THE SELENOENZYME GLUTATHIONE PEROXIDASE AT TITLE 2 0.2-NM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE PEROXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.11.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 TISSUE: ERYTHROCYTE KEYWDS OXIDOREDUCTASE(H2O2(A)) EXPDTA X-RAY DIFFRACTION AUTHOR O.EPP,R.LADENSTEIN REVDAT 10 26-JUL-23 1GP1 1 REMARK SEQADV LINK SCALE REVDAT 10 2 1 MTRIX ATOM REVDAT 9 29-NOV-17 1GP1 1 REMARK SEQRES HELIX REVDAT 8 25-DEC-13 1GP1 1 HET HETATM HETNAM REMARK REVDAT 7 13-JUL-11 1GP1 1 VERSN REVDAT 6 25-AUG-09 1GP1 1 SOURCE REVDAT 5 24-FEB-09 1GP1 1 VERSN REVDAT 4 30-SEP-03 1GP1 1 DBREF REVDAT 3 22-OCT-86 1GP1 3 REMARK SEQRES HET FORMUL REVDAT 3 2 3 TURN HETATM REVDAT 2 25-APR-86 1GP1 1 REMARK REVDAT 1 08-NOV-85 1GP1 0 JRNL AUTH O.EPP,R.LADENSTEIN,A.WENDEL JRNL TITL THE REFINED STRUCTURE OF THE SELENOENZYME GLUTATHIONE JRNL TITL 2 PEROXIDASE AT 0.2-NM RESOLUTION. JRNL REF EUR.J.BIOCHEM. V. 133 51 1983 JRNL REFN ISSN 0014-2956 JRNL PMID 6852035 JRNL DOI 10.1111/J.1432-1033.1983.TB07429.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.LADENSTEIN,O.EPP,K.BARTELS,A.JONES,R.HUBER,A.WENDEL REMARK 1 TITL STRUCTURE ANALYSIS AND MOLECULAR MODEL OF THE SELENOENZYME REMARK 1 TITL 2 GLUTATHIONE PEROXIDASE AT 2.8 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 134 199 1979 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH W.A.GUENZLER,G.J.STEFFENS,A.GROSSMANN,S.-M.A.KIM,F.OETTING, REMARK 1 AUTH 2 A.WENDEL,L.FLOHE REMARK 1 TITL THE AMINO-ACID SEQUENCE OF BOVINE GLUTATHIONE PEROXIDASE REMARK 1 REF HOPPE-SEYLER'S V. 365 195 1984 REMARK 1 REF 2 Z.PHYSIOL.CHEM. REMARK 1 REFN ISSN 0018-4888 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : EREF REMARK 3 AUTHORS : JACK,LEVITT REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2926 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 2.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.230 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 AN OCCUPANCY OF 0.0 INDICATES THAT NO SIGNIFICANT ELECTRON REMARK 3 DENSITY WAS FOUND IN THE FINAL FOURIER MAP. REMARK 4 REMARK 4 1GP1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173651. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.20000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.20000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 54.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 72.19103 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 114.96692 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 LEU A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 PRO A 9 REMARK 465 GLY A 195 REMARK 465 ALA A 196 REMARK 465 SER A 197 REMARK 465 ALA A 198 REMARK 465 ALA B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 LEU B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 ALA B 7 REMARK 465 ALA B 8 REMARK 465 PRO B 9 REMARK 465 GLY B 195 REMARK 465 ALA B 196 REMARK 465 SER B 197 REMARK 465 ALA B 198 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 194 CA C O CB CG CD OE1 REMARK 470 GLN A 194 NE2 REMARK 470 GLN B 194 CA C O CB CG CD OE1 REMARK 470 GLN B 194 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 24 CG CD OE1 OE2 REMARK 480 GLU B 24 CG CD OE1 OE2 REMARK 480 LYS B 144 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 161 O HOH B 578 2657 0.83 REMARK 500 O HOH B 430 O HOH B 430 2657 1.25 REMARK 500 CD GLU B 161 O HOH B 578 2657 1.51 REMARK 500 OE1 GLU B 161 O HOH B 578 2657 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 148 NE1 TRP A 148 CE2 -0.083 REMARK 500 TRP A 158 NE1 TRP A 158 CE2 -0.103 REMARK 500 TRP B 148 NE1 TRP B 148 CE2 -0.092 REMARK 500 TRP B 158 NE1 TRP B 158 CE2 -0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 60 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 61 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 65 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 GLU A 87 OE1 - CD - OE2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ARG A 96 NE - CZ - NH1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 96 NE - CZ - NH2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 126 NE - CZ - NH2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG A 153 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 177 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG B 60 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 60 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG B 96 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 96 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG B 126 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP B 142 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG B 153 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 173 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 24 87.77 144.34 REMARK 500 GLU A 81 50.97 -142.40 REMARK 500 VAL A 95 -61.45 -107.32 REMARK 500 ASP A 135 82.94 -159.26 REMARK 500 LEU A 139 -61.75 -107.01 REMARK 500 GLU B 24 97.06 178.33 REMARK 500 LEU B 139 -53.49 -124.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 160 GLU A 161 149.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASN A 27 0.11 SIDE CHAIN REMARK 500 GLU A 39 0.08 SIDE CHAIN REMARK 500 ASP A 57 0.08 SIDE CHAIN REMARK 500 GLN A 80 0.10 SIDE CHAIN REMARK 500 GLU A 87 0.11 SIDE CHAIN REMARK 500 ARG A 96 0.17 SIDE CHAIN REMARK 500 GLU A 127 0.09 SIDE CHAIN REMARK 500 ARG A 153 0.08 SIDE CHAIN REMARK 500 ASN A 159 0.07 SIDE CHAIN REMARK 500 ASP A 168 0.08 SIDE CHAIN REMARK 500 ASP A 183 0.08 SIDE CHAIN REMARK 500 GLU A 185 0.09 SIDE CHAIN REMARK 500 ASP A 187 0.09 SIDE CHAIN REMARK 500 ASN B 27 0.07 SIDE CHAIN REMARK 500 GLU B 39 0.09 SIDE CHAIN REMARK 500 GLN B 59 0.08 SIDE CHAIN REMARK 500 GLN B 80 0.10 SIDE CHAIN REMARK 500 GLU B 87 0.07 SIDE CHAIN REMARK 500 ASN B 104 0.09 SIDE CHAIN REMARK 500 GLU B 185 0.08 SIDE CHAIN REMARK 500 ASP B 187 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 81 11.96 REMARK 500 SER A 157 11.73 REMARK 500 PHE A 160 -11.85 REMARK 500 PRO A 171 11.35 REMARK 500 SER A 193 11.73 REMARK 500 GLU B 24 11.41 REMARK 500 PRO B 25 12.02 REMARK 500 SER B 30 13.00 REMARK 500 VAL B 35 10.14 REMARK 500 LEU B 37 10.76 REMARK 500 VAL B 156 11.51 REMARK 500 SER B 157 14.16 REMARK 500 PHE B 160 -11.40 REMARK 500 REMARK 500 REMARK: NULL DBREF 1GP1 A 1 198 UNP P00435 GPX1_BOVIN 8 205 DBREF 1GP1 B 1 198 UNP P00435 GPX1_BOVIN 8 205 SEQADV 1GP1 SE7 A 45 UNP P00435 CYS 52 CONFLICT SEQADV 1GP1 SE7 B 45 UNP P00435 CYS 52 CONFLICT SEQRES 1 A 198 ALA ALA ALA LEU ALA ALA ALA ALA PRO ARG THR VAL TYR SEQRES 2 A 198 ALA PHE SER ALA ARG PRO LEU ALA GLY GLY GLU PRO PHE SEQRES 3 A 198 ASN LEU SER SER LEU ARG GLY LYS VAL LEU LEU ILE GLU SEQRES 4 A 198 ASN VAL ALA SER LEU SE7 GLY THR THR VAL ARG ASP TYR SEQRES 5 A 198 THR GLN MET ASN ASP LEU GLN ARG ARG LEU GLY PRO ARG SEQRES 6 A 198 GLY LEU VAL VAL LEU GLY PHE PRO CYS ASN GLN PHE GLY SEQRES 7 A 198 HIS GLN GLU ASN ALA LYS ASN GLU GLU ILE LEU ASN CYS SEQRES 8 A 198 LEU LYS TYR VAL ARG PRO GLY GLY GLY PHE GLU PRO ASN SEQRES 9 A 198 PHE MET LEU PHE GLU LYS CYS GLU VAL ASN GLY GLU LYS SEQRES 10 A 198 ALA HIS PRO LEU PHE ALA PHE LEU ARG GLU VAL LEU PRO SEQRES 11 A 198 THR PRO SER ASP ASP ALA THR ALA LEU MET THR ASP PRO SEQRES 12 A 198 LYS PHE ILE THR TRP SER PRO VAL CYS ARG ASN ASP VAL SEQRES 13 A 198 SER TRP ASN PHE GLU LYS PHE LEU VAL GLY PRO ASP GLY SEQRES 14 A 198 VAL PRO VAL ARG ARG TYR SER ARG ARG PHE LEU THR ILE SEQRES 15 A 198 ASP ILE GLU PRO ASP ILE GLU THR LEU LEU SER GLN GLY SEQRES 16 A 198 ALA SER ALA SEQRES 1 B 198 ALA ALA ALA LEU ALA ALA ALA ALA PRO ARG THR VAL TYR SEQRES 2 B 198 ALA PHE SER ALA ARG PRO LEU ALA GLY GLY GLU PRO PHE SEQRES 3 B 198 ASN LEU SER SER LEU ARG GLY LYS VAL LEU LEU ILE GLU SEQRES 4 B 198 ASN VAL ALA SER LEU SE7 GLY THR THR VAL ARG ASP TYR SEQRES 5 B 198 THR GLN MET ASN ASP LEU GLN ARG ARG LEU GLY PRO ARG SEQRES 6 B 198 GLY LEU VAL VAL LEU GLY PHE PRO CYS ASN GLN PHE GLY SEQRES 7 B 198 HIS GLN GLU ASN ALA LYS ASN GLU GLU ILE LEU ASN CYS SEQRES 8 B 198 LEU LYS TYR VAL ARG PRO GLY GLY GLY PHE GLU PRO ASN SEQRES 9 B 198 PHE MET LEU PHE GLU LYS CYS GLU VAL ASN GLY GLU LYS SEQRES 10 B 198 ALA HIS PRO LEU PHE ALA PHE LEU ARG GLU VAL LEU PRO SEQRES 11 B 198 THR PRO SER ASP ASP ALA THR ALA LEU MET THR ASP PRO SEQRES 12 B 198 LYS PHE ILE THR TRP SER PRO VAL CYS ARG ASN ASP VAL SEQRES 13 B 198 SER TRP ASN PHE GLU LYS PHE LEU VAL GLY PRO ASP GLY SEQRES 14 B 198 VAL PRO VAL ARG ARG TYR SER ARG ARG PHE LEU THR ILE SEQRES 15 B 198 ASP ILE GLU PRO ASP ILE GLU THR LEU LEU SER GLN GLY SEQRES 16 B 198 ALA SER ALA MODRES 1GP1 SE7 A 45 ALA 2-AMINO-3-SELENINO-PROPIONIC ACID MODRES 1GP1 SE7 B 45 ALA 2-AMINO-3-SELENINO-PROPIONIC ACID HET SE7 A 45 8 HET SE7 B 45 8 HETNAM SE7 2-AMINO-3-SELENINO-PROPIONIC ACID FORMUL 1 SE7 2(C3 H7 N O4 SE) FORMUL 3 HOH *185(H2 O) HELIX 1 H1A VAL A 12 ALA A 14 5 3 HELIX 2 H2A LEU A 28 SER A 30 5 3 HELIX 3 H3A THR A 48 GLY A 63 1 16 HELIX 4 H4A ASN A 85 LYS A 93 1 9 HELIX 5 H5A PRO A 120 VAL A 128 1 9 HELIX 6 H6A PRO A 143 PHE A 145 5 3 HELIX 7 H7A ILE A 184 SER A 193 1 10 HELIX 8 H1B VAL B 12 ALA B 14 5 3 HELIX 9 H2B LEU B 28 SER B 30 5 3 HELIX 10 H3B THR B 48 GLY B 63 1 16 HELIX 11 H4B ASN B 85 LYS B 93 1 9 HELIX 12 H5B PRO B 120 VAL B 128 1 9 HELIX 13 H6B PRO B 143 PHE B 145 5 3 HELIX 14 H7B ILE B 184 SER B 193 1 10 SHEET 1 SA 4 GLY A 66 CYS A 74 0 SHEET 2 SA 4 VAL A 35 VAL A 41 1 SHEET 3 SA 4 PHE A 160 GLY A 166 -1 SHEET 4 SA 4 VAL A 170 TYR A 175 -1 SHEET 1 SB 4 GLY B 66 CYS B 74 0 SHEET 2 SB 4 VAL B 35 VAL B 41 1 SHEET 3 SB 4 PHE B 160 GLY B 166 -1 SHEET 4 SB 4 VAL B 170 TYR B 175 -1 LINK C LEU A 44 N SE7 A 45 1555 1555 1.35 LINK C SE7 A 45 N GLY A 46 1555 1555 1.32 LINK C LEU B 44 N SE7 B 45 1555 1555 1.33 LINK C SE7 B 45 N GLY B 46 1555 1555 1.30 CISPEP 1 ARG A 96 PRO A 97 0 3.74 CISPEP 2 SER A 149 PRO A 150 0 -6.77 CISPEP 3 ARG B 96 PRO B 97 0 8.54 CISPEP 4 SER B 149 PRO B 150 0 -6.86 CRYST1 90.400 109.500 58.200 90.00 99.00 90.00 C 1 2 1 8 ORIGX1 0.987688 0.000000 0.156430 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 -0.156430 0.000000 0.987688 0.00000 SCALE1 0.011062 0.000000 0.001752 0.00000 SCALE2 0.000000 0.009132 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017396 0.00000 MTRIX1 1 0.131858 -0.010348 0.991227 -25.02745 1 MTRIX2 1 0.002370 -0.999940 -0.010752 75.56879 1 MTRIX3 1 0.991204 0.003773 -0.131818 29.04819 1