HEADER TRANSFERASE 27-MAR-02 1GX5 TITLE HEPATITIS C VIRUS RNA POLYMERASE IN COMPLEX WITH GTP AND MANGANESE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 2420-2955; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS (ISOLATE BK); SOURCE 3 ORGANISM_COMMON: HCV; SOURCE 4 ORGANISM_TAXID: 11105; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PT7.7 KEYWDS TRANSFERASE, POLYPROTEIN, GLYCOPROTEIN, RNA-DIRECTED RNA POLYMERASE, KEYWDS 2 CORE PROTEIN, COAT PROTEIN, ENVELOPE PROTEIN, HELICASE, ATP BINDING, KEYWDS 3 TRANSMEMBRANE, NONSTRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.BRESSANELLI,F.A.REY REVDAT 4 13-DEC-23 1GX5 1 REMARK LINK REVDAT 3 16-SEP-15 1GX5 1 COMPND SOURCE REMARK VERSN REVDAT 3 2 1 FORMUL SITE ATOM TER REVDAT 2 24-FEB-09 1GX5 1 VERSN REVDAT 1 09-APR-02 1GX5 0 JRNL AUTH S.BRESSANELLI,L.TOMEI,F.A.REY,R.DE FRANCESCO JRNL TITL A STRUCTURAL ANALYSIS OF THE HEPATITIS C VIRUS RNA JRNL TITL 2 POLYMERASE IN COMPLEX WITH RIBONUCLEOTIDES JRNL REF J.VIROL. V. 76 3482 2002 JRNL REFN ISSN 0022-538X JRNL PMID 11884572 JRNL DOI 10.1128/JVI.76.7.3482-3492.2002 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1717311.670 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 68538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 3537 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4245 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 207 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4125 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 652 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.82000 REMARK 3 B22 (A**2) : -8.01000 REMARK 3 B33 (A**2) : 3.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.17 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.950 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.900 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.820 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.570 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.070 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 54.95 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : GTP7_0.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : GTP7.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 1GX5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1290009600. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .9326 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68538 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.42300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1CSJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% (W/V) PEG 4000, 0.1 M SODIUM REMARK 280 CITRATE, 7% 2-PROPANOL, PH 6.80 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.53800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.11250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.53800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.11250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL OLIGOMERIZATION STATE OF THE REMARK 300 PROTEIN IS NOT KNOWN.THE PARTICULAR CRYSTAL REMARK 300 CONTACT OBSERVED IN THIS CRYSTAL IS NOTOBSERVED IN REMARK 300 OTHER CRYSTAL FORMS OF THE PROTEIN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.07600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 96.22500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 532 REMARK 465 LYS A 533 REMARK 465 LEU A 534 REMARK 465 LYS A 535 REMARK 465 LEU A 536 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 531 CA C O CB CG CD CE REMARK 470 LYS A 531 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 15 -177.94 176.83 REMARK 500 ILE A 23 97.27 -64.71 REMARK 500 VAL A 131 -36.97 -133.69 REMARK 500 GLU A 150 -3.44 -57.88 REMARK 500 LYS A 151 -154.96 -139.88 REMARK 500 THR A 181 -35.26 -136.62 REMARK 500 LEU A 260 -54.48 -134.33 REMARK 500 SER A 347 55.89 74.71 REMARK 500 ALA A 348 60.56 -152.01 REMARK 500 ASN A 406 70.02 -105.12 REMARK 500 ILE A 424 -62.14 -98.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2116 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A2311 DISTANCE = 6.27 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GTP A 1531 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1533 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 221 O REMARK 620 2 GTP A1531 O2B 95.8 REMARK 620 3 GTP A1531 O2A 157.3 81.7 REMARK 620 4 HOH A2373 O 59.7 93.7 97.8 REMARK 620 5 HOH A2649 O 90.7 144.6 104.5 119.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1534 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 318 OD2 REMARK 620 2 ASP A 319 OD1 110.5 REMARK 620 3 GTP A1531 O2A 84.1 158.1 REMARK 620 4 HOH A2650 O 97.2 75.4 86.8 REMARK 620 5 HOH A2651 O 148.3 101.2 65.9 91.4 REMARK 620 6 HOH A2652 O 95.9 78.2 117.6 153.4 89.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1533 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1534 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1535 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 1531 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 1532 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1C2P RELATED DB: PDB REMARK 900 HEPATITIS C VIRUS NS5B RIBONUCLEIC ACID- DEPENDENT RIBONUCLEIC ACID REMARK 900 POLYMERASE REMARK 900 RELATED ID: 1CSJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RIBONUCLEIC ACID- DEPENDENT RIBONUCLEIC REMARK 900 ACID POLYMERASE OF HEPATITIS C VIRUS REMARK 900 RELATED ID: 1CU1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN ENZYME COMPLEX FROM HEPATITIS C VIRUS REMARK 900 RELATED ID: 1NS3 RELATED DB: PDB REMARK 900 STRUCTURE OF HCV PROTEASE (BK STRAIN) REMARK 900 RELATED ID: 1QUV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RIBONUCLEIC ACID DIRECTED RIBONUCLEIC ACID REMARK 900 POLYMERASE OF HEPATITIS C VIRUS REMARK 900 RELATED ID: 8OHM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RIBONUCLEIC ACID HELICASE FROM GENOTYPE 1B REMARK 900 HEPATITIS C VIRUS: MECHANISM OF UNWINDING DUPLEX RIBONUCLEIC ACID DBREF 1GX5 A 1 536 UNP P26663 POLG_HCVBK 2420 2955 SEQRES 1 A 536 SER MSE SER TYR THR TRP THR GLY ALA LEU ILE THR PRO SEQRES 2 A 536 CYS ALA ALA GLU GLU SER LYS LEU PRO ILE ASN ALA LEU SEQRES 3 A 536 SER ASN SER LEU LEU ARG HIS HIS ASN MSE VAL TYR ALA SEQRES 4 A 536 THR THR SER ARG SER ALA GLY LEU ARG GLN LYS LYS VAL SEQRES 5 A 536 THR PHE ASP ARG LEU GLN VAL LEU ASP ASP HIS TYR ARG SEQRES 6 A 536 ASP VAL LEU LYS GLU MSE LYS ALA LYS ALA SER THR VAL SEQRES 7 A 536 LYS ALA LYS LEU LEU SER VAL GLU GLU ALA CYS LYS LEU SEQRES 8 A 536 THR PRO PRO HIS SER ALA LYS SER LYS PHE GLY TYR GLY SEQRES 9 A 536 ALA LYS ASP VAL ARG ASN LEU SER SER LYS ALA VAL ASN SEQRES 10 A 536 HIS ILE HIS SER VAL TRP LYS ASP LEU LEU GLU ASP THR SEQRES 11 A 536 VAL THR PRO ILE ASP THR THR ILE MSE ALA LYS ASN GLU SEQRES 12 A 536 VAL PHE CYS VAL GLN PRO GLU LYS GLY GLY ARG LYS PRO SEQRES 13 A 536 ALA ARG LEU ILE VAL PHE PRO ASP LEU GLY VAL ARG VAL SEQRES 14 A 536 CYS GLU LYS MSE ALA LEU TYR ASP VAL VAL SER THR LEU SEQRES 15 A 536 PRO GLN VAL VAL MSE GLY SER SER TYR GLY PHE GLN TYR SEQRES 16 A 536 SER PRO GLY GLN ARG VAL GLU PHE LEU VAL ASN THR TRP SEQRES 17 A 536 LYS SER LYS LYS ASN PRO MSE GLY PHE SER TYR ASP THR SEQRES 18 A 536 ARG CYS PHE ASP SER THR VAL THR GLU ASN ASP ILE ARG SEQRES 19 A 536 VAL GLU GLU SER ILE TYR GLN CYS CYS ASP LEU ALA PRO SEQRES 20 A 536 GLU ALA ARG GLN ALA ILE LYS SER LEU THR GLU ARG LEU SEQRES 21 A 536 TYR ILE GLY GLY PRO LEU THR ASN SER LYS GLY GLN ASN SEQRES 22 A 536 CYS GLY TYR ARG ARG CYS ARG ALA SER GLY VAL LEU THR SEQRES 23 A 536 THR SER CYS GLY ASN THR LEU THR CYS TYR LEU LYS ALA SEQRES 24 A 536 SER ALA ALA CYS ARG ALA ALA LYS LEU GLN ASP CYS THR SEQRES 25 A 536 MSE LEU VAL ASN GLY ASP ASP LEU VAL VAL ILE CYS GLU SEQRES 26 A 536 SER ALA GLY THR GLN GLU ASP ALA ALA SER LEU ARG VAL SEQRES 27 A 536 PHE THR GLU ALA MSE THR ARG TYR SER ALA PRO PRO GLY SEQRES 28 A 536 ASP PRO PRO GLN PRO GLU TYR ASP LEU GLU LEU ILE THR SEQRES 29 A 536 SER CYS SER SER ASN VAL SER VAL ALA HIS ASP ALA SER SEQRES 30 A 536 GLY LYS ARG VAL TYR TYR LEU THR ARG ASP PRO THR THR SEQRES 31 A 536 PRO LEU ALA ARG ALA ALA TRP GLU THR ALA ARG HIS THR SEQRES 32 A 536 PRO VAL ASN SER TRP LEU GLY ASN ILE ILE MSE TYR ALA SEQRES 33 A 536 PRO THR LEU TRP ALA ARG MSE ILE LEU MSE THR HIS PHE SEQRES 34 A 536 PHE SER ILE LEU LEU ALA GLN GLU GLN LEU GLU LYS ALA SEQRES 35 A 536 LEU ASP CYS GLN ILE TYR GLY ALA CYS TYR SER ILE GLU SEQRES 36 A 536 PRO LEU ASP LEU PRO GLN ILE ILE GLU ARG LEU HIS GLY SEQRES 37 A 536 LEU SER ALA PHE SER LEU HIS SER TYR SER PRO GLY GLU SEQRES 38 A 536 ILE ASN ARG VAL ALA SER CYS LEU ARG LYS LEU GLY VAL SEQRES 39 A 536 PRO PRO LEU ARG VAL TRP ARG HIS ARG ALA ARG SER VAL SEQRES 40 A 536 ARG ALA ARG LEU LEU SER GLN GLY GLY ARG ALA ALA THR SEQRES 41 A 536 CYS GLY LYS TYR LEU PHE ASN TRP ALA VAL LYS THR LYS SEQRES 42 A 536 LEU LYS LEU MODRES 1GX5 MSE A 2 MET SELENOMETHIONINE MODRES 1GX5 MSE A 36 MET SELENOMETHIONINE MODRES 1GX5 MSE A 71 MET SELENOMETHIONINE MODRES 1GX5 MSE A 139 MET SELENOMETHIONINE MODRES 1GX5 MSE A 173 MET SELENOMETHIONINE MODRES 1GX5 MSE A 187 MET SELENOMETHIONINE MODRES 1GX5 MSE A 215 MET SELENOMETHIONINE MODRES 1GX5 MSE A 313 MET SELENOMETHIONINE MODRES 1GX5 MSE A 343 MET SELENOMETHIONINE MODRES 1GX5 MSE A 414 MET SELENOMETHIONINE MODRES 1GX5 MSE A 423 MET SELENOMETHIONINE MODRES 1GX5 MSE A 426 MET SELENOMETHIONINE HET MSE A 2 8 HET MSE A 36 8 HET MSE A 71 8 HET MSE A 139 8 HET MSE A 173 8 HET MSE A 187 8 HET MSE A 215 8 HET MSE A 313 8 HET MSE A 343 8 HET MSE A 414 11 HET MSE A 423 8 HET MSE A 426 8 HET GTP A1531 13 HET GTP A1532 52 HET MN A1533 1 HET MN A1534 1 HET MN A1535 1 HETNAM MSE SELENOMETHIONINE HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MN MANGANESE (II) ION FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 GTP 2(C10 H16 N5 O14 P3) FORMUL 4 MN 3(MN 2+) FORMUL 7 HOH *652(H2 O) HELIX 1 1 ASN A 24 LEU A 31 1 8 HELIX 2 2 HIS A 33 ASN A 35 5 3 HELIX 3 3 THR A 41 ARG A 43 5 3 HELIX 4 4 SER A 44 THR A 53 1 10 HELIX 5 5 ASP A 61 SER A 76 1 16 HELIX 6 6 SER A 84 LEU A 91 1 8 HELIX 7 7 GLY A 104 ASN A 110 1 7 HELIX 8 8 SER A 112 ASP A 129 1 18 HELIX 9 9 ASP A 164 SER A 180 1 17 HELIX 10 10 THR A 181 GLY A 188 1 8 HELIX 11 11 GLY A 192 TYR A 195 5 4 HELIX 12 12 SER A 196 LYS A 211 1 16 HELIX 13 13 CYS A 223 VAL A 228 1 6 HELIX 14 14 THR A 229 CYS A 243 1 15 HELIX 15 15 ALA A 246 LEU A 260 1 15 HELIX 16 16 THR A 286 ALA A 306 1 21 HELIX 17 17 GLY A 328 TYR A 346 1 19 HELIX 18 18 ASP A 359 ILE A 363 5 5 HELIX 19 19 PRO A 388 ARG A 401 1 14 HELIX 20 20 ASN A 406 TYR A 415 1 10 HELIX 21 21 THR A 418 ILE A 424 1 7 HELIX 22 22 ILE A 424 GLN A 436 1 13 HELIX 23 23 GLU A 455 LEU A 457 5 3 HELIX 24 24 ASP A 458 GLY A 468 1 11 HELIX 25 25 LEU A 469 SER A 473 5 5 HELIX 26 26 SER A 478 GLY A 493 1 16 HELIX 27 27 PRO A 496 SER A 513 1 18 HELIX 28 28 GLY A 515 PHE A 526 1 12 HELIX 29 29 ASN A 527 VAL A 530 5 4 SHEET 1 AA 5 TYR A 4 TRP A 6 0 SHEET 2 AA 5 ASN A 273 ARG A 277 -1 O TYR A 276 N THR A 5 SHEET 3 AA 5 GLY A 264 THR A 267 -1 O GLY A 264 N ARG A 277 SHEET 4 AA 5 THR A 136 ALA A 140 1 O THR A 136 N THR A 267 SHEET 5 AA 5 LEU A 159 PHE A 162 -1 O ILE A 160 N MSE A 139 SHEET 1 AB 2 VAL A 37 ALA A 39 0 SHEET 2 AB 2 VAL A 144 CYS A 146 -1 O PHE A 145 N TYR A 38 SHEET 1 AC 3 PRO A 214 TYR A 219 0 SHEET 2 AC 3 ASP A 319 GLU A 325 -1 O LEU A 320 N TYR A 219 SHEET 3 AC 3 GLN A 309 ASN A 316 -1 O GLN A 309 N GLU A 325 SHEET 1 AD 2 ASN A 369 HIS A 374 0 SHEET 2 AD 2 ARG A 380 THR A 385 -1 O VAL A 381 N ALA A 373 SHEET 1 AE 2 LEU A 443 ILE A 447 0 SHEET 2 AE 2 ALA A 450 ILE A 454 -1 O ALA A 450 N ILE A 447 LINK C SER A 1 N MSE A 2 1555 1555 1.33 LINK C MSE A 2 N SER A 3 1555 1555 1.33 LINK C ASN A 35 N MSE A 36 1555 1555 1.33 LINK C MSE A 36 N VAL A 37 1555 1555 1.33 LINK C GLU A 70 N MSE A 71 1555 1555 1.32 LINK C MSE A 71 N LYS A 72 1555 1555 1.33 LINK C ILE A 138 N MSE A 139 1555 1555 1.33 LINK C MSE A 139 N ALA A 140 1555 1555 1.33 LINK C LYS A 172 N MSE A 173 1555 1555 1.33 LINK C MSE A 173 N ALA A 174 1555 1555 1.34 LINK C VAL A 186 N MSE A 187 1555 1555 1.32 LINK C MSE A 187 N GLY A 188 1555 1555 1.32 LINK C PRO A 214 N MSE A 215 1555 1555 1.33 LINK C MSE A 215 N GLY A 216 1555 1555 1.32 LINK C THR A 312 N MSE A 313 1555 1555 1.33 LINK C MSE A 313 N LEU A 314 1555 1555 1.33 LINK C ALA A 342 N MSE A 343 1555 1555 1.35 LINK C MSE A 343 N THR A 344 1555 1555 1.33 LINK C ILE A 413 N MSE A 414 1555 1555 1.33 LINK C MSE A 414 N TYR A 415 1555 1555 1.33 LINK C ARG A 422 N MSE A 423 1555 1555 1.33 LINK C MSE A 423 N ILE A 424 1555 1555 1.32 LINK C LEU A 425 N MSE A 426 1555 1555 1.32 LINK C MSE A 426 N THR A 427 1555 1555 1.33 LINK O THR A 221 MN MN A1533 1555 1555 2.42 LINK OD2 ASP A 318 MN MN A1534 1555 1555 2.31 LINK OD1 ASP A 319 MN MN A1534 1555 1555 2.13 LINK O2B GTP A1531 MN MN A1533 1555 1555 2.62 LINK O2A GTP A1531 MN MN A1533 1555 1555 2.51 LINK O2A GTP A1531 MN MN A1534 1555 1555 2.63 LINK O1GAGTP A1532 MN MN A1535 1555 1555 1.67 LINK MN MN A1533 O HOH A2373 1555 1555 2.42 LINK MN MN A1533 O HOH A2649 1555 1555 2.60 LINK MN MN A1534 O HOH A2650 1555 1555 2.59 LINK MN MN A1534 O HOH A2651 1555 1555 2.31 LINK MN MN A1534 O HOH A2652 1555 1555 2.58 SITE 1 AC1 6 ASP A 220 THR A 221 ASP A 318 GTP A1531 SITE 2 AC1 6 HOH A2373 HOH A2649 SITE 1 AC2 6 ASP A 318 ASP A 319 GTP A1531 HOH A2650 SITE 2 AC2 6 HOH A2651 HOH A2652 SITE 1 AC3 1 GTP A1532 SITE 1 AC4 14 ARG A 48 THR A 221 ARG A 222 CYS A 223 SITE 2 AC4 14 PHE A 224 ASP A 318 MN A1533 MN A1534 SITE 3 AC4 14 HOH A2097 HOH A2373 HOH A2641 HOH A2642 SITE 4 AC4 14 HOH A2651 HOH A2652 SITE 1 AC5 11 ARG A 32 PRO A 495 PRO A 496 VAL A 499 SITE 2 AC5 11 HIS A 502 ARG A 503 ARG A 505 MN A1535 SITE 3 AC5 11 HOH A2644 HOH A2645 HOH A2646 CRYST1 67.076 96.225 95.995 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014908 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010392 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010417 0.00000