HEADER STRUCTURAL PROTEIN 28-JUN-01 1H6W OBSLTE 22-FEB-23 1H6W 5LYE TITLE CRYSTAL STRUCTURE OF A HEAT- AND PROTEASE-STABLE FRAGMENT OF THE TITLE 2 BACTERIOPHAGE T4 SHORT FIBRE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOPHAGE T4 SHORT TAIL FIBRE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HEAT- AND PROTEASE-STABLE FRAGMENT; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BACTERIOPHAGE T4 SHORT TAIL FIBRE; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: C-TERMINAL ASSOCIATED PEPTIDE; COMPND 10 SYNONYM: PROTEIN GP12; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTERIOPHAGE T4; SOURCE 3 ORGANISM_TAXID: 10665; SOURCE 4 STRAIN: T4D; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: BACTERIOPHAGE T4; SOURCE 12 ORGANISM_TAXID: 10665; SOURCE 13 STRAIN: T4D; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 17 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET21A; SOURCE 19 OTHER_DETAILS: AS DESCRIBED IN REFERENCE 1, GP12 IS NATURALLY SOURCE 20 RESISTANT TO PROTEASES. THE PROTEIN WAS HEATED TO 56 DEGREES AND SOURCE 21 THEN TREATED WITH TRYPSIN. A FRAGMENT CONTAINING RESIDUES 85-396 WAS SOURCE 22 IDENTIFIED AND CRYSTALLISED. THE CRYSTAL STRUCTURE SHOWED A C- SOURCE 23 TERMINAL PEPTIDE CONTAINING RESIDUES 518-527 WAS ASSOCIATED WITH THE SOURCE 24 HEAT- AND PROTEASE-STABLE FRAGMENT. KEYWDS STRUCTURAL PROTEIN, GENE PRODUCT 12, ADHESIN, FIBROUS PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.J.VAN RAAIJ,G.SCHOEHN,M.R.BURDA,S.MILLER REVDAT 4 22-FEB-23 1H6W 1 OBSLTE REVDAT 3 07-FEB-18 1H6W 1 AUTHOR JRNL REVDAT 2 24-FEB-09 1H6W 1 VERSN REVDAT 1 13-DEC-01 1H6W 0 JRNL AUTH M.J.VAN RAAIJ,G.SCHOEHN,M.R.BURDA,S.MILLER JRNL TITL CRYSTAL STRUCTURE OF A HEAT- AND PROTEASE-STABLE PART OF THE JRNL TITL 2 BACTERIOPHAGE T4 SHORT TAIL FIBRE JRNL REF J.MOL.BIOL. V. 314 1137 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11743729 JRNL DOI 10.1006/JMBI.2000.5204 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.J.VAN RAAIJ,G.SCHOEHN,M.JAQUINOD,K.ASHMAN,M.R.BURDA, REMARK 1 AUTH 2 S.MILLER REMARK 1 TITL IDENTIFICATION AND CRYSTALLISATION OF A HEAT- AND REMARK 1 TITL 2 PROTEASE-STABLE FRAGMENT OF THE BACTERIOPHAGE T4 SHORT TAIL REMARK 1 TITL 3 FIBRE REMARK 1 REF BIOL.CHEM. V. 382 1049 2001 REMARK 1 REFN ISSN 1431-6730 REMARK 1 PMID 11530935 REMARK 1 DOI 10.1515/BC.2001.131 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.R.BURDA,I.HINDENNACH,S.MILLER REMARK 1 TITL STABILITY OF BACTERIOPHAGE T4 SHORT TAIL FIBER REMARK 1 REF BIOL.CHEM. V. 381 255 2000 REMARK 1 REFN ISSN 1431-6730 REMARK 1 PMID 10782996 REMARK 1 DOI 10.1515/BC.2000.032 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.R.BURDA,S.MILLER REMARK 1 TITL FOLDING OF COLIPHAGE T4 SHORT TAIL FIBER IN VITRO. ANALYSING REMARK 1 TITL 2 THE ROLE OF A BACTERIOPHAGE-ENCODED CHAPERONE REMARK 1 REF EUR.J.BIOCHEM. V. 265 771 1999 REMARK 1 REFN ISSN 0014-2956 REMARK 1 PMID 10504409 REMARK 1 DOI 10.1046/J.1432-1327.1999.00782.X REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 27229 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1451 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1169 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.387 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1H6W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUN-01. REMARK 100 THE DEPOSITION ID IS D_1290008240. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28682 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.15400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-25 % (V/V) 2-METHYLPROPANE-2-OL REMARK 280 (TERTIARY BUTANOL), 100 MM SODIUM CITRATE PH 5.6 10% (V/V) REMARK 280 GLYCEROL, 10 MM HEPES, 150 MM SODIUM CHLORIDE, PH 5.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 25.62850 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 44.38986 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -25.62850 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 44.38986 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 85 REMARK 465 SER A 86 REMARK 465 TYR A 87 REMARK 465 PRO A 88 REMARK 465 ASN A 89 REMARK 465 ALA A 90 REMARK 465 THR A 91 REMARK 465 GLU A 92 REMARK 465 SER A 93 REMARK 465 VAL A 94 REMARK 465 TYR A 95 REMARK 465 GLY A 96 REMARK 465 LEU A 97 REMARK 465 THR A 98 REMARK 465 ARG A 99 REMARK 465 TYR A 100 REMARK 465 SER A 101 REMARK 465 THR A 102 REMARK 465 ASN A 103 REMARK 465 ASP A 104 REMARK 465 GLU A 105 REMARK 465 ALA A 106 REMARK 465 ILE A 107 REMARK 465 ALA A 108 REMARK 465 GLY A 109 REMARK 465 VAL A 110 REMARK 465 ASN A 111 REMARK 465 ASN A 112 REMARK 465 GLU A 113 REMARK 465 SER A 114 REMARK 465 SER A 115 REMARK 465 ILE A 116 REMARK 465 THR A 117 REMARK 465 PRO A 118 REMARK 465 ALA A 119 REMARK 465 LYS A 120 REMARK 465 PHE A 121 REMARK 465 THR A 122 REMARK 465 VAL A 123 REMARK 465 ALA A 124 REMARK 465 LEU A 125 REMARK 465 ASN A 126 REMARK 465 ASN A 127 REMARK 465 VAL A 128 REMARK 465 PHE A 129 REMARK 465 GLU A 130 REMARK 465 THR A 131 REMARK 465 ARG A 132 REMARK 465 VAL A 133 REMARK 465 SER A 134 REMARK 465 THR A 135 REMARK 465 GLU A 136 REMARK 465 SER A 137 REMARK 465 SER A 138 REMARK 465 ASN A 139 REMARK 465 GLY A 140 REMARK 465 VAL A 141 REMARK 465 ILE A 142 REMARK 465 LYS A 143 REMARK 465 ILE A 144 REMARK 465 SER A 145 REMARK 465 SER A 146 REMARK 465 LEU A 147 REMARK 465 PRO A 148 REMARK 465 GLN A 149 REMARK 465 ALA A 150 REMARK 465 LEU A 151 REMARK 465 ALA A 152 REMARK 465 GLY A 153 REMARK 465 ALA A 154 REMARK 465 ASP A 155 REMARK 465 ASP A 156 REMARK 465 THR A 157 REMARK 465 THR A 158 REMARK 465 ALA A 159 REMARK 465 MET A 160 REMARK 465 THR A 161 REMARK 465 PRO A 162 REMARK 465 LEU A 163 REMARK 465 LYS A 164 REMARK 465 THR A 165 REMARK 465 GLN A 166 REMARK 465 GLN A 167 REMARK 465 LEU A 168 REMARK 465 ALA A 169 REMARK 465 VAL A 170 REMARK 465 LYS A 171 REMARK 465 LEU A 172 REMARK 465 ILE A 173 REMARK 465 ALA A 174 REMARK 465 GLN A 175 REMARK 465 ILE A 176 REMARK 465 ALA A 177 REMARK 465 PRO A 178 REMARK 465 SER A 179 REMARK 465 LYS A 180 REMARK 465 ASN A 181 REMARK 465 ALA A 182 REMARK 465 ALA A 183 REMARK 465 THR A 184 REMARK 465 GLU A 185 REMARK 465 SER A 186 REMARK 465 GLU A 187 REMARK 465 GLN A 188 REMARK 465 GLY A 189 REMARK 465 VAL A 190 REMARK 465 ILE A 191 REMARK 465 GLN A 192 REMARK 465 LEU A 193 REMARK 465 ALA A 194 REMARK 465 THR A 195 REMARK 465 VAL A 196 REMARK 465 ALA A 197 REMARK 465 GLN A 198 REMARK 465 ALA A 199 REMARK 465 ARG A 200 REMARK 465 GLN A 201 REMARK 465 GLY A 202 REMARK 465 THR A 203 REMARK 465 LEU A 204 REMARK 465 ARG A 205 REMARK 465 GLU A 206 REMARK 465 GLY A 207 REMARK 465 TYR A 208 REMARK 465 ALA A 209 REMARK 465 ILE A 210 REMARK 465 SER A 211 REMARK 465 PRO A 212 REMARK 465 TYR A 213 REMARK 465 THR A 214 REMARK 465 PHE A 215 REMARK 465 MET A 216 REMARK 465 ASN A 217 REMARK 465 SER A 218 REMARK 465 THR A 219 REMARK 465 ALA A 220 REMARK 465 THR A 221 REMARK 465 GLU A 222 REMARK 465 GLU A 223 REMARK 465 TYR A 224 REMARK 465 LYS A 225 REMARK 465 GLY A 226 REMARK 465 VAL A 227 REMARK 465 ILE A 228 REMARK 465 LYS A 229 REMARK 465 LEU A 230 REMARK 465 GLY A 231 REMARK 465 THR A 232 REMARK 465 GLN A 233 REMARK 465 SER A 234 REMARK 465 GLU A 235 REMARK 465 VAL A 236 REMARK 465 ASN A 237 REMARK 465 SER A 238 REMARK 465 ASN A 239 REMARK 465 ASN A 240 REMARK 465 ALA A 241 REMARK 465 SER A 242 REMARK 465 VAL A 243 REMARK 465 ALA A 244 REMARK 465 VAL A 245 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 246 OG1 THR A 249 2.12 REMARK 500 NE2 GLN A 334 OE1 GLU B 527 2.16 REMARK 500 O THR A 246 N THR A 249 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 246 OG1 - CB - CG2 ANGL. DEV. = -15.5 DEGREES REMARK 500 THR A 246 N - CA - C ANGL. DEV. = 24.6 DEGREES REMARK 500 ARG A 396 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 ARG A 396 CG - CD - NE ANGL. DEV. = 15.3 DEGREES REMARK 500 ARG A 396 NE - CZ - NH2 ANGL. DEV. = 5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 278 59.11 -93.47 REMARK 500 ASP A 286 45.52 -78.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 246 GLY A 247 131.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2090 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A2107 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A2134 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH A2135 DISTANCE = 6.09 ANGSTROMS REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THE SHORT TAIL FIBRE OF REMARK 999 BACTERIOPHAGE T4D HAS NOT BEEN DEPOSITED DBREF 1H6W A 85 396 PDB 1H6W 1H6W 85 396 DBREF 1H6W B 518 527 UNP P10930 VG12_BPT4 518 527 SEQRES 1 A 312 LEU SER TYR PRO ASN ALA THR GLU SER VAL TYR GLY LEU SEQRES 2 A 312 THR ARG TYR SER THR ASN ASP GLU ALA ILE ALA GLY VAL SEQRES 3 A 312 ASN ASN GLU SER SER ILE THR PRO ALA LYS PHE THR VAL SEQRES 4 A 312 ALA LEU ASN ASN VAL PHE GLU THR ARG VAL SER THR GLU SEQRES 5 A 312 SER SER ASN GLY VAL ILE LYS ILE SER SER LEU PRO GLN SEQRES 6 A 312 ALA LEU ALA GLY ALA ASP ASP THR THR ALA MET THR PRO SEQRES 7 A 312 LEU LYS THR GLN GLN LEU ALA VAL LYS LEU ILE ALA GLN SEQRES 8 A 312 ILE ALA PRO SER LYS ASN ALA ALA THR GLU SER GLU GLN SEQRES 9 A 312 GLY VAL ILE GLN LEU ALA THR VAL ALA GLN ALA ARG GLN SEQRES 10 A 312 GLY THR LEU ARG GLU GLY TYR ALA ILE SER PRO TYR THR SEQRES 11 A 312 PHE MET ASN SER THR ALA THR GLU GLU TYR LYS GLY VAL SEQRES 12 A 312 ILE LYS LEU GLY THR GLN SER GLU VAL ASN SER ASN ASN SEQRES 13 A 312 ALA SER VAL ALA VAL THR GLY ALA THR LEU ASN GLY ARG SEQRES 14 A 312 GLY SER THR THR SER MET ARG GLY VAL VAL LYS LEU THR SEQRES 15 A 312 THR THR ALA GLY SER GLN SER GLY GLY ASP ALA SER SER SEQRES 16 A 312 ALA LEU ALA TRP ASN ALA ASP VAL ILE HIS GLN ARG GLY SEQRES 17 A 312 GLY GLN THR ILE ASN GLY THR LEU ARG ILE ASN ASN THR SEQRES 18 A 312 LEU THR ILE ALA SER GLY GLY ALA ASN ILE THR GLY THR SEQRES 19 A 312 VAL ASN MET THR GLY GLY TYR ILE GLN GLY LYS ARG VAL SEQRES 20 A 312 VAL THR GLN ASN GLU ILE ASP ARG THR ILE PRO VAL GLY SEQRES 21 A 312 ALA ILE MET MET TRP ALA ALA ASP SER LEU PRO SER ASP SEQRES 22 A 312 ALA TRP ARG PHE CYS HIS GLY GLY THR VAL SER ALA SER SEQRES 23 A 312 ASP CYS PRO LEU TYR ALA SER ARG ILE GLY THR ARG TYR SEQRES 24 A 312 GLY GLY SER SER SER ASN PRO GLY LEU PRO ASP MET ARG SEQRES 1 B 10 SER LEU ASN TYR ILE ILE LYS VAL LYS GLU FORMUL 3 HOH *185(H2 O) HELIX 1 1 THR A 246 ASN A 251 1 6 HELIX 2 2 THR A 333 ASN A 335 5 3 HELIX 3 3 GLU A 336 ILE A 341 1 6 HELIX 4 4 CYS A 372 GLY A 380 1 9 SHEET 1 AA 2 LYS A 264 THR A 266 0 SHEET 2 AA 2 SER A 279 LEU A 281 1 O ALA A 280 N THR A 266 SHEET 1 AB 2 TYR A 325 ILE A 326 0 SHEET 2 AB 2 LYS A 329 ARG A 330 -1 O LYS A 329 N ILE A 326 SHEET 1 AC 3 ILE A 346 TRP A 349 0 SHEET 2 AC 3 ASN B 520 LYS B 524 -1 O ASN B 520 N TRP A 349 SHEET 3 AC 3 TRP A 359 PHE A 361 -1 O ARG A 360 N ILE B 523 CRYST1 51.257 51.257 249.491 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019509 0.011264 0.000000 0.00000 SCALE2 0.000000 0.022528 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004008 0.00000