data_1HAG # _entry.id 1HAG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1HAG WWPDB D_1000173744 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1HAG _pdbx_database_status.recvd_initial_deposition_date 1994-06-27 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tulinsky, A.' 1 'Vijayalakshmi, J.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;The isomorphous structures of prethrombin2, hirugen-, and PPACK-thrombin: changes accompanying activation and exosite binding to thrombin. ; 'Protein Sci.' 3 2254 2271 1994 PRCIEI US 0961-8368 0795 ? 7756983 ? 1 'Refined Structure of the Hirudin-Thrombin Complex' J.Mol.Biol. 221 583 ? 1991 JMOBAK UK 0022-2836 0070 ? ? ? 2 'Structure of the Hirugen and Hirulog 1 Complexes of Alpha-Thrombin' J.Mol.Biol. 221 1379 ? 1991 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vijayalakshmi, J.' 1 ? primary 'Padmanabhan, K.P.' 2 ? primary 'Mann, K.G.' 3 ? primary 'Tulinsky, A.' 4 ? 1 'Rydel, T.J.' 5 ? 1 'Tulinsky, A.' 6 ? 1 'Bode, W.' 7 ? 1 'Huber, R.' 8 ? 2 'Skrzypczak-Jankun, E.' 9 ? 2 'Carperos, V.E.' 10 ? 2 'Ravichandran, K.G.' 11 ? 2 'Tulinsky, A.' 12 ? 2 'Westbrook, M.' 13 ? 2 'Maraganore, J.M.' 14 ? # _cell.entry_id 1HAG _cell.length_a 72.850 _cell.length_b 71.320 _cell.length_c 72.630 _cell.angle_alpha 90.00 _cell.angle_beta 101.10 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HAG _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PRETHROMBIN 2' 33858.730 1 3.4.21.5 ? ? ? 2 polymer man HIRUGEN 1363.399 1 ? ? ? ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 4 water nat water 18.015 202 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHC LLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRE TAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGD SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE ; ;TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHC LLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRE TAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGD SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE ; E ? 2 'polypeptide(L)' no yes 'DFEEIPEE(TYS)L' DFEEIPEEYL I ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 PHE n 1 3 GLY n 1 4 SER n 1 5 GLY n 1 6 GLU n 1 7 ALA n 1 8 ASP n 1 9 CYS n 1 10 GLY n 1 11 LEU n 1 12 ARG n 1 13 PRO n 1 14 LEU n 1 15 PHE n 1 16 GLU n 1 17 LYS n 1 18 LYS n 1 19 SER n 1 20 LEU n 1 21 GLU n 1 22 ASP n 1 23 LYS n 1 24 THR n 1 25 GLU n 1 26 ARG n 1 27 GLU n 1 28 LEU n 1 29 LEU n 1 30 GLU n 1 31 SER n 1 32 TYR n 1 33 ILE n 1 34 ASP n 1 35 GLY n 1 36 ARG n 1 37 ILE n 1 38 VAL n 1 39 GLU n 1 40 GLY n 1 41 SER n 1 42 ASP n 1 43 ALA n 1 44 GLU n 1 45 ILE n 1 46 GLY n 1 47 MET n 1 48 SER n 1 49 PRO n 1 50 TRP n 1 51 GLN n 1 52 VAL n 1 53 MET n 1 54 LEU n 1 55 PHE n 1 56 ARG n 1 57 LYS n 1 58 SER n 1 59 PRO n 1 60 GLN n 1 61 GLU n 1 62 LEU n 1 63 LEU n 1 64 CYS n 1 65 GLY n 1 66 ALA n 1 67 SER n 1 68 LEU n 1 69 ILE n 1 70 SER n 1 71 ASP n 1 72 ARG n 1 73 TRP n 1 74 VAL n 1 75 LEU n 1 76 THR n 1 77 ALA n 1 78 ALA n 1 79 HIS n 1 80 CYS n 1 81 LEU n 1 82 LEU n 1 83 TYR n 1 84 PRO n 1 85 PRO n 1 86 TRP n 1 87 ASP n 1 88 LYS n 1 89 ASN n 1 90 PHE n 1 91 THR n 1 92 GLU n 1 93 ASN n 1 94 ASP n 1 95 LEU n 1 96 LEU n 1 97 VAL n 1 98 ARG n 1 99 ILE n 1 100 GLY n 1 101 LYS n 1 102 HIS n 1 103 SER n 1 104 ARG n 1 105 THR n 1 106 ARG n 1 107 TYR n 1 108 GLU n 1 109 ARG n 1 110 ASN n 1 111 ILE n 1 112 GLU n 1 113 LYS n 1 114 ILE n 1 115 SER n 1 116 MET n 1 117 LEU n 1 118 GLU n 1 119 LYS n 1 120 ILE n 1 121 TYR n 1 122 ILE n 1 123 HIS n 1 124 PRO n 1 125 ARG n 1 126 TYR n 1 127 ASN n 1 128 TRP n 1 129 ARG n 1 130 GLU n 1 131 ASN n 1 132 LEU n 1 133 ASP n 1 134 ARG n 1 135 ASP n 1 136 ILE n 1 137 ALA n 1 138 LEU n 1 139 MET n 1 140 LYS n 1 141 LEU n 1 142 LYS n 1 143 LYS n 1 144 PRO n 1 145 VAL n 1 146 ALA n 1 147 PHE n 1 148 SER n 1 149 ASP n 1 150 TYR n 1 151 ILE n 1 152 HIS n 1 153 PRO n 1 154 VAL n 1 155 CYS n 1 156 LEU n 1 157 PRO n 1 158 ASP n 1 159 ARG n 1 160 GLU n 1 161 THR n 1 162 ALA n 1 163 ALA n 1 164 SER n 1 165 LEU n 1 166 LEU n 1 167 GLN n 1 168 ALA n 1 169 GLY n 1 170 TYR n 1 171 LYS n 1 172 GLY n 1 173 ARG n 1 174 VAL n 1 175 THR n 1 176 GLY n 1 177 TRP n 1 178 GLY n 1 179 ASN n 1 180 LEU n 1 181 LYS n 1 182 GLU n 1 183 THR n 1 184 TRP n 1 185 THR n 1 186 ALA n 1 187 ASN n 1 188 VAL n 1 189 GLY n 1 190 LYS n 1 191 GLY n 1 192 GLN n 1 193 PRO n 1 194 SER n 1 195 VAL n 1 196 LEU n 1 197 GLN n 1 198 VAL n 1 199 VAL n 1 200 ASN n 1 201 LEU n 1 202 PRO n 1 203 ILE n 1 204 VAL n 1 205 GLU n 1 206 ARG n 1 207 PRO n 1 208 VAL n 1 209 CYS n 1 210 LYS n 1 211 ASP n 1 212 SER n 1 213 THR n 1 214 ARG n 1 215 ILE n 1 216 ARG n 1 217 ILE n 1 218 THR n 1 219 ASP n 1 220 ASN n 1 221 MET n 1 222 PHE n 1 223 CYS n 1 224 ALA n 1 225 GLY n 1 226 TYR n 1 227 LYS n 1 228 PRO n 1 229 ASP n 1 230 GLU n 1 231 GLY n 1 232 LYS n 1 233 ARG n 1 234 GLY n 1 235 ASP n 1 236 ALA n 1 237 CYS n 1 238 GLU n 1 239 GLY n 1 240 ASP n 1 241 SER n 1 242 GLY n 1 243 GLY n 1 244 PRO n 1 245 PHE n 1 246 VAL n 1 247 MET n 1 248 LYS n 1 249 SER n 1 250 PRO n 1 251 PHE n 1 252 ASN n 1 253 ASN n 1 254 ARG n 1 255 TRP n 1 256 TYR n 1 257 GLN n 1 258 MET n 1 259 GLY n 1 260 ILE n 1 261 VAL n 1 262 SER n 1 263 TRP n 1 264 GLY n 1 265 GLU n 1 266 GLY n 1 267 CYS n 1 268 ASP n 1 269 ARG n 1 270 ASP n 1 271 GLY n 1 272 LYS n 1 273 TYR n 1 274 GLY n 1 275 PHE n 1 276 TYR n 1 277 THR n 1 278 HIS n 1 279 VAL n 1 280 PHE n 1 281 ARG n 1 282 LEU n 1 283 LYS n 1 284 LYS n 1 285 TRP n 1 286 ILE n 1 287 GLN n 1 288 LYS n 1 289 VAL n 1 290 ILE n 1 291 ASP n 1 292 GLN n 1 293 PHE n 1 294 GLY n 1 295 GLU n 2 1 ASP n 2 2 PHE n 2 3 GLU n 2 4 GLU n 2 5 ILE n 2 6 PRO n 2 7 GLU n 2 8 GLU n 2 9 TYS n 2 10 LEU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human Homo ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? 'medicinal leech' Hirudo ? ? ? ? ? ? ? 'Hirudo medicinalis' 6421 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP THRB_HUMAN P00734 1 328 ? ? 2 UNP ITHE_HIRME P28505 2 55 ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1HAG E 9 ? 295 ? P00734 328 ? 622 ? 1 247 2 2 1HAG I 1 ? 10 ? P28505 55 ? 64 ? 55 64 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 TYS 'L-peptide linking' n O-SULFO-L-TYROSINE ? 'C9 H11 N O6 S' 261.252 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1HAG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.63 _exptl_crystal.density_percent_sol 53.18 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 1HAG _refine.ls_number_reflns_obs 14211 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.0 _refine.ls_d_res_high 2.0 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.169 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.169 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;FLEXIBLE REGIONS WITH RELATIVELY HIGH TEMPERATURE FACTORS ARE FOUND IN THE ACTIVATION DOMAIN, N-TERMINAL AND C-TERMINAL REGIONS. THESE REGIONS INCLUDE: THR E 1H - GLU E 1C, GLU E 14H - GLUE 18, GLU E 146 - GLN E 151 (GAMMA AUTOLYSIS LOOP), PRO E 186 - ARG E 187, GLY E 219 - GLY E 223, AND ASP E 243 - GLU E 247. A FEW ATOMS IN THE AUTOLYSIS LOOP (N THR E 147, CA TRP E 148, CB TRP E 148, AND THE SIDE CHAIN OF THRE 149) DO NOT HAVE WELL-DEFINED ELECTRON DENSITY. ATOMS WITH NO ELECTRON DENSITIES ARE GIVEN OCCUPANCIES OF 0.01 IN THE ENTRY. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2474 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 202 _refine_hist.number_atoms_total 2690 _refine_hist.d_res_high 2.0 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.022 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 2.8 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 1.2 1.0 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 2.1 2.0 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 2.6 2.5 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 3.7 3.0 ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1HAG _struct.title ;THE ISOMORPHOUS STRUCTURES OF PRETHROMBIN2, HIRUGEN-AND PPACK-THROMBIN: CHANGES ACCOMPANYING ACTIVATION AND EXOSITE BINDING TO THROMBIN ; _struct.pdbx_descriptor 'PRETHROMBIN2 (E.C.3.4.21.5) COMPLEXED WITH HIRUGEN (N-ACETYLHIRUDIN 53 - 64 WITH SULFATO-TYR 63)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1HAG _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'COMPLEX(SERINE PROTEINASE-INHIBITOR), HYDROLASE-HYDROLASE INHIBITOR COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 H1 THR A 24 B GLU A 30 H THR E 14 GLU E 14 1 ? 7 HELX_P HELX_P2 H2 ASP A 158 ? LEU A 166 ? ASP E 125 LEU E 130 1 ? 9 HELX_P HELX_P3 H3 GLU A 205 ? ASP A 211 ? GLU E 164 ASP E 170 1 ? 7 HELX_P HELX_P4 H4 HIS A 278 ? GLN A 292 ? HIS E 230 GLN E 244 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 155 SG ? ? E CYS 1 E CYS 122 1_555 ? ? ? ? ? ? ? 2.042 ? ? disulf2 disulf ? ? A CYS 64 SG ? ? ? 1_555 A CYS 80 SG ? ? E CYS 42 E CYS 58 1_555 ? ? ? ? ? ? ? 1.995 ? ? disulf3 disulf ? ? A CYS 209 SG ? ? ? 1_555 A CYS 223 SG ? ? E CYS 168 E CYS 182 1_555 ? ? ? ? ? ? ? 2.144 ? ? disulf4 disulf ? ? A CYS 237 SG ? ? ? 1_555 A CYS 267 SG ? ? E CYS 191 E CYS 220 1_555 ? ? ? ? ? ? ? 2.080 ? ? covale1 covale one ? A ASN 89 ND2 ? G ? 1_555 C NAG . C1 ? ? E ASN 60 E NAG 400 1_555 ? ? ? ? ? ? ? 1.458 ? N-Glycosylation covale2 covale both ? B GLU 8 C ? ? ? 1_555 B TYS 9 N ? ? I GLU 62 I TYS 63 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale3 covale both ? B TYS 9 C ? ? ? 1_555 B LEU 10 N ? ? I TYS 63 I LEU 64 1_555 ? ? ? ? ? ? ? 1.317 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 58 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code A _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 36 _struct_mon_prot_cis.auth_asym_id E _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 59 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 37 _struct_mon_prot_cis.pdbx_auth_asym_id_2 E _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.18 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details B1 ? 7 ? B2 ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense B1 1 2 ? anti-parallel B1 2 3 ? anti-parallel B1 3 4 ? anti-parallel B1 4 5 ? anti-parallel B1 5 6 ? anti-parallel B1 6 7 ? anti-parallel B2 1 2 ? anti-parallel B2 2 3 ? anti-parallel B2 3 4 ? anti-parallel B2 4 5 ? anti-parallel B2 5 6 ? anti-parallel B2 6 7 ? anti-parallel B2 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id B1 1 TRP A 50 ? LYS A 57 ? TRP E 29 LYS E 36 B1 2 LEU A 63 ? ILE A 69 ? LEU E 41 ILE E 47 B1 3 ARG A 72 ? ALA A 77 ? ARG E 50 ALA E 55 B1 4 ARG A 134 ? LYS A 142 ? ARG E 101 LYS E 109 B1 5 GLU A 112 ? PRO A 124 ? GLU E 80 PRO E 92 B1 6 ASP A 94 ? GLY A 100 ? ASP E 63 GLY E 69 B1 7 TRP A 50 ? LYS A 57 ? TRP E 29 LYS E 36 B2 1 GLY A 169 ? TRP A 177 ? GLY E 133 TRP E 141 B2 2 LEU A 196 ? ILE A 203 ? LEU E 155 ILE E 162 B2 3 ASN A 220 ? LYS A 227 ? ASN E 179 LYS E 185 B2 4 TYR A 273 ? THR A 277 ? TYR E 225 THR E 229 B2 5 ILE A 260 ? GLY A 266 ? ILE E 212 GLY E 219 B2 6 ARG A 254 ? GLN A 257 ? ARG E 206 GLN E 209 B2 7 GLY A 242 ? SER A 249 ? GLY E 196 SER E 203 B2 8 GLY A 169 ? TRP A 177 ? GLY E 133 TRP E 141 # _struct_site.id CAT _struct_site.pdbx_evidence_code Unknown _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 CAT 3 HIS A 79 ? HIS E 57 . ? 1_555 ? 2 CAT 3 ASP A 135 ? ASP E 102 . ? 1_555 ? 3 CAT 3 SER A 241 ? SER E 195 . ? 1_555 ? # _database_PDB_matrix.entry_id 1HAG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1HAG _atom_sites.fract_transf_matrix[1][1] 0.013727 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002693 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014021 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014031 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_sites_footnote.id _atom_sites_footnote.text 1 'CIS PROLINE - PRO E 37' 2 'RESIDUE TYR I 63 IN THE HIRUGEN MOLECULE IS BONDED TO THE SULFATO-TYROSINE.' # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR E H n A 1 2 PHE 2 1 1 PHE PHE E G n A 1 3 GLY 3 1 1 GLY GLY E F n A 1 4 SER 4 1 1 SER SER E E n A 1 5 GLY 5 1 1 GLY GLY E D n A 1 6 GLU 6 1 1 GLU GLU E C n A 1 7 ALA 7 1 1 ALA ALA E B n A 1 8 ASP 8 1 1 ASP ASP E A n A 1 9 CYS 9 1 1 CYS CYS E . n A 1 10 GLY 10 2 2 GLY GLY E . n A 1 11 LEU 11 3 3 LEU LEU E . n A 1 12 ARG 12 4 4 ARG ARG E . n A 1 13 PRO 13 5 5 PRO PRO E . n A 1 14 LEU 14 6 6 LEU LEU E . n A 1 15 PHE 15 7 7 PHE PHE E . n A 1 16 GLU 16 8 8 GLU GLU E . n A 1 17 LYS 17 9 9 LYS LYS E . n A 1 18 LYS 18 10 10 LYS LYS E . n A 1 19 SER 19 11 11 SER SER E . n A 1 20 LEU 20 12 12 LEU LEU E . n A 1 21 GLU 21 13 13 GLU GLU E . n A 1 22 ASP 22 14 14 ASP ASP E . n A 1 23 LYS 23 14 14 LYS LYS E A n A 1 24 THR 24 14 14 THR THR E B n A 1 25 GLU 25 14 14 GLU GLU E C n A 1 26 ARG 26 14 14 ARG ARG E D n A 1 27 GLU 27 14 14 GLU GLU E E n A 1 28 LEU 28 14 14 LEU LEU E F n A 1 29 LEU 29 14 14 LEU LEU E G n A 1 30 GLU 30 14 14 GLU GLU E H n A 1 31 SER 31 14 14 SER SER E I n A 1 32 TYR 32 14 14 TYR TYR E J n A 1 33 ILE 33 14 14 ILE ILE E K n A 1 34 ASP 34 14 14 ASP ASP E L n A 1 35 GLY 35 14 14 GLY GLY E M n A 1 36 ARG 36 15 15 ARG ARG E . n A 1 37 ILE 37 16 16 ILE ILE E . n A 1 38 VAL 38 17 17 VAL VAL E . n A 1 39 GLU 39 18 18 GLU GLU E . n A 1 40 GLY 40 19 19 GLY GLY E . n A 1 41 SER 41 20 20 SER SER E . n A 1 42 ASP 42 21 21 ASP ASP E . n A 1 43 ALA 43 22 22 ALA ALA E . n A 1 44 GLU 44 23 23 GLU GLU E . n A 1 45 ILE 45 24 24 ILE ILE E . n A 1 46 GLY 46 25 25 GLY GLY E . n A 1 47 MET 47 26 26 MET MET E . n A 1 48 SER 48 27 27 SER SER E . n A 1 49 PRO 49 28 28 PRO PRO E . n A 1 50 TRP 50 29 29 TRP TRP E . n A 1 51 GLN 51 30 30 GLN GLN E . n A 1 52 VAL 52 31 31 VAL VAL E . n A 1 53 MET 53 32 32 MET MET E . n A 1 54 LEU 54 33 33 LEU LEU E . n A 1 55 PHE 55 34 34 PHE PHE E . n A 1 56 ARG 56 35 35 ARG ARG E . n A 1 57 LYS 57 36 36 LYS LYS E . n A 1 58 SER 58 36 36 SER SER E A n A 1 59 PRO 59 37 37 PRO PRO E . n A 1 60 GLN 60 38 38 GLN GLN E . n A 1 61 GLU 61 39 39 GLU GLU E . n A 1 62 LEU 62 40 40 LEU LEU E . n A 1 63 LEU 63 41 41 LEU LEU E . n A 1 64 CYS 64 42 42 CYS CYS E . n A 1 65 GLY 65 43 43 GLY GLY E . n A 1 66 ALA 66 44 44 ALA ALA E . n A 1 67 SER 67 45 45 SER SER E . n A 1 68 LEU 68 46 46 LEU LEU E . n A 1 69 ILE 69 47 47 ILE ILE E . n A 1 70 SER 70 48 48 SER SER E . n A 1 71 ASP 71 49 49 ASP ASP E . n A 1 72 ARG 72 50 50 ARG ARG E . n A 1 73 TRP 73 51 51 TRP TRP E . n A 1 74 VAL 74 52 52 VAL VAL E . n A 1 75 LEU 75 53 53 LEU LEU E . n A 1 76 THR 76 54 54 THR THR E . n A 1 77 ALA 77 55 55 ALA ALA E . n A 1 78 ALA 78 56 56 ALA ALA E . n A 1 79 HIS 79 57 57 HIS HIS E . n A 1 80 CYS 80 58 58 CYS CYS E . n A 1 81 LEU 81 59 59 LEU LEU E . n A 1 82 LEU 82 60 60 LEU LEU E . n A 1 83 TYR 83 60 60 TYR TYR E A n A 1 84 PRO 84 60 60 PRO PRO E B n A 1 85 PRO 85 60 60 PRO PRO E C n A 1 86 TRP 86 60 60 TRP TRP E D n A 1 87 ASP 87 60 60 ASP ASP E E n A 1 88 LYS 88 60 60 LYS LYS E F n A 1 89 ASN 89 60 60 ASN ASN E G n A 1 90 PHE 90 60 60 PHE PHE E H n A 1 91 THR 91 60 60 THR THR E I n A 1 92 GLU 92 61 61 GLU GLU E . n A 1 93 ASN 93 62 62 ASN ASN E . n A 1 94 ASP 94 63 63 ASP ASP E . n A 1 95 LEU 95 64 64 LEU LEU E . n A 1 96 LEU 96 65 65 LEU LEU E . n A 1 97 VAL 97 66 66 VAL VAL E . n A 1 98 ARG 98 67 67 ARG ARG E . n A 1 99 ILE 99 68 68 ILE ILE E . n A 1 100 GLY 100 69 69 GLY GLY E . n A 1 101 LYS 101 70 70 LYS LYS E . n A 1 102 HIS 102 71 71 HIS HIS E . n A 1 103 SER 103 72 72 SER SER E . n A 1 104 ARG 104 73 73 ARG ARG E . n A 1 105 THR 105 74 74 THR THR E . n A 1 106 ARG 106 75 75 ARG ARG E . n A 1 107 TYR 107 76 76 TYR TYR E . n A 1 108 GLU 108 77 77 GLU GLU E . n A 1 109 ARG 109 77 77 ARG ARG E A n A 1 110 ASN 110 78 78 ASN ASN E . n A 1 111 ILE 111 79 79 ILE ILE E . n A 1 112 GLU 112 80 80 GLU GLU E . n A 1 113 LYS 113 81 81 LYS LYS E . n A 1 114 ILE 114 82 82 ILE ILE E . n A 1 115 SER 115 83 83 SER SER E . n A 1 116 MET 116 84 84 MET MET E . n A 1 117 LEU 117 85 85 LEU LEU E . n A 1 118 GLU 118 86 86 GLU GLU E . n A 1 119 LYS 119 87 87 LYS LYS E . n A 1 120 ILE 120 88 88 ILE ILE E . n A 1 121 TYR 121 89 89 TYR TYR E . n A 1 122 ILE 122 90 90 ILE ILE E . n A 1 123 HIS 123 91 91 HIS HIS E . n A 1 124 PRO 124 92 92 PRO PRO E . n A 1 125 ARG 125 93 93 ARG ARG E . n A 1 126 TYR 126 94 94 TYR TYR E . n A 1 127 ASN 127 95 95 ASN ASN E . n A 1 128 TRP 128 96 96 TRP TRP E . n A 1 129 ARG 129 97 97 ARG ARG E . n A 1 130 GLU 130 97 97 GLU GLU E A n A 1 131 ASN 131 98 98 ASN ASN E . n A 1 132 LEU 132 99 99 LEU LEU E . n A 1 133 ASP 133 100 100 ASP ASP E . n A 1 134 ARG 134 101 101 ARG ARG E . n A 1 135 ASP 135 102 102 ASP ASP E . n A 1 136 ILE 136 103 103 ILE ILE E . n A 1 137 ALA 137 104 104 ALA ALA E . n A 1 138 LEU 138 105 105 LEU LEU E . n A 1 139 MET 139 106 106 MET MET E . n A 1 140 LYS 140 107 107 LYS LYS E . n A 1 141 LEU 141 108 108 LEU LEU E . n A 1 142 LYS 142 109 109 LYS LYS E . n A 1 143 LYS 143 110 110 LYS LYS E . n A 1 144 PRO 144 111 111 PRO PRO E . n A 1 145 VAL 145 112 112 VAL VAL E . n A 1 146 ALA 146 113 113 ALA ALA E . n A 1 147 PHE 147 114 114 PHE PHE E . n A 1 148 SER 148 115 115 SER SER E . n A 1 149 ASP 149 116 116 ASP ASP E . n A 1 150 TYR 150 117 117 TYR TYR E . n A 1 151 ILE 151 118 118 ILE ILE E . n A 1 152 HIS 152 119 119 HIS HIS E . n A 1 153 PRO 153 120 120 PRO PRO E . n A 1 154 VAL 154 121 121 VAL VAL E . n A 1 155 CYS 155 122 122 CYS CYS E . n A 1 156 LEU 156 123 123 LEU LEU E . n A 1 157 PRO 157 124 124 PRO PRO E . n A 1 158 ASP 158 125 125 ASP ASP E . n A 1 159 ARG 159 126 126 ARG ARG E . n A 1 160 GLU 160 127 127 GLU GLU E . n A 1 161 THR 161 128 128 THR THR E . n A 1 162 ALA 162 129 129 ALA ALA E . n A 1 163 ALA 163 129 129 ALA ALA E A n A 1 164 SER 164 129 129 SER SER E B n A 1 165 LEU 165 129 129 LEU LEU E C n A 1 166 LEU 166 130 130 LEU LEU E . n A 1 167 GLN 167 131 131 GLN GLN E . n A 1 168 ALA 168 132 132 ALA ALA E . n A 1 169 GLY 169 133 133 GLY GLY E . n A 1 170 TYR 170 134 134 TYR TYR E . n A 1 171 LYS 171 135 135 LYS LYS E . n A 1 172 GLY 172 136 136 GLY GLY E . n A 1 173 ARG 173 137 137 ARG ARG E . n A 1 174 VAL 174 138 138 VAL VAL E . n A 1 175 THR 175 139 139 THR THR E . n A 1 176 GLY 176 140 140 GLY GLY E . n A 1 177 TRP 177 141 141 TRP TRP E . n A 1 178 GLY 178 142 142 GLY GLY E . n A 1 179 ASN 179 143 143 ASN ASN E . n A 1 180 LEU 180 144 144 LEU LEU E . n A 1 181 LYS 181 145 145 LYS LYS E . n A 1 182 GLU 182 146 146 GLU GLU E . n A 1 183 THR 183 147 147 THR THR E . n A 1 184 TRP 184 148 148 TRP TRP E . n A 1 185 THR 185 149 149 THR THR E . n A 1 186 ALA 186 149 149 ALA ALA E A n A 1 187 ASN 187 149 149 ASN ASN E B n A 1 188 VAL 188 149 149 VAL VAL E C n A 1 189 GLY 189 149 149 GLY GLY E D n A 1 190 LYS 190 149 149 LYS LYS E E n A 1 191 GLY 191 150 150 GLY GLY E . n A 1 192 GLN 192 151 151 GLN GLN E . n A 1 193 PRO 193 152 152 PRO PRO E . n A 1 194 SER 194 153 153 SER SER E . n A 1 195 VAL 195 154 154 VAL VAL E . n A 1 196 LEU 196 155 155 LEU LEU E . n A 1 197 GLN 197 156 156 GLN GLN E . n A 1 198 VAL 198 157 157 VAL VAL E . n A 1 199 VAL 199 158 158 VAL VAL E . n A 1 200 ASN 200 159 159 ASN ASN E . n A 1 201 LEU 201 160 160 LEU LEU E . n A 1 202 PRO 202 161 161 PRO PRO E . n A 1 203 ILE 203 162 162 ILE ILE E . n A 1 204 VAL 204 163 163 VAL VAL E . n A 1 205 GLU 205 164 164 GLU GLU E . n A 1 206 ARG 206 165 165 ARG ARG E . n A 1 207 PRO 207 166 166 PRO PRO E . n A 1 208 VAL 208 167 167 VAL VAL E . n A 1 209 CYS 209 168 168 CYS CYS E . n A 1 210 LYS 210 169 169 LYS LYS E . n A 1 211 ASP 211 170 170 ASP ASP E . n A 1 212 SER 212 171 171 SER SER E . n A 1 213 THR 213 172 172 THR THR E . n A 1 214 ARG 214 173 173 ARG ARG E . n A 1 215 ILE 215 174 174 ILE ILE E . n A 1 216 ARG 216 175 175 ARG ARG E . n A 1 217 ILE 217 176 176 ILE ILE E . n A 1 218 THR 218 177 177 THR THR E . n A 1 219 ASP 219 178 178 ASP ASP E . n A 1 220 ASN 220 179 179 ASN ASN E . n A 1 221 MET 221 180 180 MET MET E . n A 1 222 PHE 222 181 181 PHE PHE E . n A 1 223 CYS 223 182 182 CYS CYS E . n A 1 224 ALA 224 183 183 ALA ALA E . n A 1 225 GLY 225 184 184 GLY GLY E . n A 1 226 TYR 226 184 184 TYR TYR E A n A 1 227 LYS 227 185 185 LYS LYS E . n A 1 228 PRO 228 186 186 PRO PRO E . n A 1 229 ASP 229 186 186 ASP ASP E A n A 1 230 GLU 230 186 186 GLU GLU E B n A 1 231 GLY 231 186 186 GLY GLY E C n A 1 232 LYS 232 186 186 LYS LYS E D n A 1 233 ARG 233 187 187 ARG ARG E . n A 1 234 GLY 234 188 188 GLY GLY E . n A 1 235 ASP 235 189 189 ASP ASP E . n A 1 236 ALA 236 190 190 ALA ALA E . n A 1 237 CYS 237 191 191 CYS CYS E . n A 1 238 GLU 238 192 192 GLU GLU E . n A 1 239 GLY 239 193 193 GLY GLY E . n A 1 240 ASP 240 194 194 ASP ASP E . n A 1 241 SER 241 195 195 SER SER E . n A 1 242 GLY 242 196 196 GLY GLY E . n A 1 243 GLY 243 197 197 GLY GLY E . n A 1 244 PRO 244 198 198 PRO PRO E . n A 1 245 PHE 245 199 199 PHE PHE E . n A 1 246 VAL 246 200 200 VAL VAL E . n A 1 247 MET 247 201 201 MET MET E . n A 1 248 LYS 248 202 202 LYS LYS E . n A 1 249 SER 249 203 203 SER SER E . n A 1 250 PRO 250 204 204 PRO PRO E . n A 1 251 PHE 251 204 204 PHE PHE E A n A 1 252 ASN 252 204 204 ASN ASN E B n A 1 253 ASN 253 205 205 ASN ASN E . n A 1 254 ARG 254 206 206 ARG ARG E . n A 1 255 TRP 255 207 207 TRP TRP E . n A 1 256 TYR 256 208 208 TYR TYR E . n A 1 257 GLN 257 209 209 GLN GLN E . n A 1 258 MET 258 210 210 MET MET E . n A 1 259 GLY 259 211 211 GLY GLY E . n A 1 260 ILE 260 212 212 ILE ILE E . n A 1 261 VAL 261 213 213 VAL VAL E . n A 1 262 SER 262 214 214 SER SER E . n A 1 263 TRP 263 215 215 TRP TRP E . n A 1 264 GLY 264 216 216 GLY GLY E . n A 1 265 GLU 265 217 217 GLU GLU E . n A 1 266 GLY 266 219 219 GLY GLY E . n A 1 267 CYS 267 220 220 CYS CYS E . n A 1 268 ASP 268 221 221 ASP ASP E . n A 1 269 ARG 269 221 221 ARG ARG E A n A 1 270 ASP 270 222 222 ASP ASP E . n A 1 271 GLY 271 223 223 GLY GLY E . n A 1 272 LYS 272 224 224 LYS LYS E . n A 1 273 TYR 273 225 225 TYR TYR E . n A 1 274 GLY 274 226 226 GLY GLY E . n A 1 275 PHE 275 227 227 PHE PHE E . n A 1 276 TYR 276 228 228 TYR TYR E . n A 1 277 THR 277 229 229 THR THR E . n A 1 278 HIS 278 230 230 HIS HIS E . n A 1 279 VAL 279 231 231 VAL VAL E . n A 1 280 PHE 280 232 232 PHE PHE E . n A 1 281 ARG 281 233 233 ARG ARG E . n A 1 282 LEU 282 234 234 LEU LEU E . n A 1 283 LYS 283 235 235 LYS LYS E . n A 1 284 LYS 284 236 236 LYS LYS E . n A 1 285 TRP 285 237 237 TRP TRP E . n A 1 286 ILE 286 238 238 ILE ILE E . n A 1 287 GLN 287 239 239 GLN GLN E . n A 1 288 LYS 288 240 240 LYS LYS E . n A 1 289 VAL 289 241 241 VAL VAL E . n A 1 290 ILE 290 242 242 ILE ILE E . n A 1 291 ASP 291 243 243 ASP ASP E . n A 1 292 GLN 292 244 244 GLN GLN E . n A 1 293 PHE 293 245 245 PHE PHE E . n A 1 294 GLY 294 246 246 GLY GLY E . n A 1 295 GLU 295 247 247 GLU GLU E . n B 2 1 ASP 1 55 55 ASP ASP I . n B 2 2 PHE 2 56 56 PHE PHE I . n B 2 3 GLU 3 57 57 GLU GLU I . n B 2 4 GLU 4 58 58 GLU GLU I . n B 2 5 ILE 5 59 59 ILE ILE I . n B 2 6 PRO 6 60 60 PRO PRO I . n B 2 7 GLU 7 61 61 GLU GLU I . n B 2 8 GLU 8 62 62 GLU GLU I . n B 2 9 TYS 9 63 63 TYS TYR I . n B 2 10 LEU 10 64 64 LEU LEU I . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 400 400 NAG NAG E . D 4 HOH 1 401 401 HOH HOH E . D 4 HOH 2 402 402 HOH HOH E . D 4 HOH 3 403 403 HOH HOH E . D 4 HOH 4 404 404 HOH HOH E . D 4 HOH 5 405 405 HOH HOH E . D 4 HOH 6 406 406 HOH HOH E . D 4 HOH 7 407 407 HOH HOH E . D 4 HOH 8 408 408 HOH HOH E . D 4 HOH 9 409 409 HOH HOH E . D 4 HOH 10 410 410 HOH HOH E . D 4 HOH 11 411 411 HOH HOH E . D 4 HOH 12 412 412 HOH HOH E . D 4 HOH 13 413 413 HOH HOH E . D 4 HOH 14 414 414 HOH HOH E . D 4 HOH 15 415 415 HOH HOH E . D 4 HOH 16 416 416 HOH HOH E . D 4 HOH 17 417 417 HOH HOH E . D 4 HOH 18 418 418 HOH HOH E . D 4 HOH 19 419 419 HOH HOH E . D 4 HOH 20 420 420 HOH HOH E . D 4 HOH 21 421 421 HOH HOH E . D 4 HOH 22 422 422 HOH HOH E . D 4 HOH 23 423 423 HOH HOH E . D 4 HOH 24 425 425 HOH HOH E . D 4 HOH 25 426 426 HOH HOH E . D 4 HOH 26 427 427 HOH HOH E . D 4 HOH 27 428 428 HOH HOH E . D 4 HOH 28 429 429 HOH HOH E . D 4 HOH 29 430 430 HOH HOH E . D 4 HOH 30 431 431 HOH HOH E . D 4 HOH 31 432 432 HOH HOH E . D 4 HOH 32 433 433 HOH HOH E . D 4 HOH 33 434 434 HOH HOH E . D 4 HOH 34 435 435 HOH HOH E . D 4 HOH 35 436 436 HOH HOH E . D 4 HOH 36 437 437 HOH HOH E . D 4 HOH 37 438 438 HOH HOH E . D 4 HOH 38 439 439 HOH HOH E . D 4 HOH 39 440 440 HOH HOH E . D 4 HOH 40 441 441 HOH HOH E . D 4 HOH 41 442 442 HOH HOH E . D 4 HOH 42 443 443 HOH HOH E . D 4 HOH 43 444 444 HOH HOH E . D 4 HOH 44 445 445 HOH HOH E . D 4 HOH 45 446 446 HOH HOH E . D 4 HOH 46 447 447 HOH HOH E . D 4 HOH 47 448 448 HOH HOH E . D 4 HOH 48 449 449 HOH HOH E . D 4 HOH 49 450 450 HOH HOH E . D 4 HOH 50 451 451 HOH HOH E . D 4 HOH 51 452 452 HOH HOH E . D 4 HOH 52 453 453 HOH HOH E . D 4 HOH 53 454 454 HOH HOH E . D 4 HOH 54 455 455 HOH HOH E . D 4 HOH 55 456 456 HOH HOH E . D 4 HOH 56 457 457 HOH HOH E . D 4 HOH 57 458 458 HOH HOH E . D 4 HOH 58 459 459 HOH HOH E . D 4 HOH 59 460 460 HOH HOH E . D 4 HOH 60 461 461 HOH HOH E . D 4 HOH 61 462 462 HOH HOH E . D 4 HOH 62 463 463 HOH HOH E . D 4 HOH 63 464 464 HOH HOH E . D 4 HOH 64 465 465 HOH HOH E . D 4 HOH 65 466 466 HOH HOH E . D 4 HOH 66 467 467 HOH HOH E . D 4 HOH 67 468 468 HOH HOH E . D 4 HOH 68 469 469 HOH HOH E . D 4 HOH 69 470 470 HOH HOH E . D 4 HOH 70 471 471 HOH HOH E . D 4 HOH 71 472 472 HOH HOH E . D 4 HOH 72 473 473 HOH HOH E . D 4 HOH 73 474 474 HOH HOH E . D 4 HOH 74 475 475 HOH HOH E . D 4 HOH 75 476 476 HOH HOH E . D 4 HOH 76 477 477 HOH HOH E . D 4 HOH 77 478 478 HOH HOH E . D 4 HOH 78 479 479 HOH HOH E . D 4 HOH 79 480 480 HOH HOH E . D 4 HOH 80 481 481 HOH HOH E . D 4 HOH 81 482 482 HOH HOH E . D 4 HOH 82 483 483 HOH HOH E . D 4 HOH 83 484 484 HOH HOH E . D 4 HOH 84 485 485 HOH HOH E . D 4 HOH 85 486 486 HOH HOH E . D 4 HOH 86 488 488 HOH HOH E . D 4 HOH 87 489 489 HOH HOH E . D 4 HOH 88 490 490 HOH HOH E . D 4 HOH 89 493 493 HOH HOH E . D 4 HOH 90 494 494 HOH HOH E . D 4 HOH 91 495 495 HOH HOH E . D 4 HOH 92 496 496 HOH HOH E . D 4 HOH 93 497 497 HOH HOH E . D 4 HOH 94 498 498 HOH HOH E . D 4 HOH 95 500 500 HOH HOH E . D 4 HOH 96 501 501 HOH HOH E . D 4 HOH 97 502 502 HOH HOH E . D 4 HOH 98 503 503 HOH HOH E . D 4 HOH 99 504 504 HOH HOH E . D 4 HOH 100 505 505 HOH HOH E . D 4 HOH 101 506 506 HOH HOH E . D 4 HOH 102 507 507 HOH HOH E . D 4 HOH 103 508 508 HOH HOH E . D 4 HOH 104 509 509 HOH HOH E . D 4 HOH 105 510 510 HOH HOH E . D 4 HOH 106 511 511 HOH HOH E . D 4 HOH 107 512 512 HOH HOH E . D 4 HOH 108 513 513 HOH HOH E . D 4 HOH 109 514 514 HOH HOH E . D 4 HOH 110 515 515 HOH HOH E . D 4 HOH 111 516 516 HOH HOH E . D 4 HOH 112 517 517 HOH HOH E . D 4 HOH 113 518 518 HOH HOH E . D 4 HOH 114 519 519 HOH HOH E . D 4 HOH 115 520 520 HOH HOH E . D 4 HOH 116 521 521 HOH HOH E . D 4 HOH 117 522 522 HOH HOH E . D 4 HOH 118 523 523 HOH HOH E . D 4 HOH 119 524 524 HOH HOH E . D 4 HOH 120 525 525 HOH HOH E . D 4 HOH 121 526 526 HOH HOH E . D 4 HOH 122 527 527 HOH HOH E . D 4 HOH 123 528 528 HOH HOH E . D 4 HOH 124 529 529 HOH HOH E . D 4 HOH 125 531 531 HOH HOH E . D 4 HOH 126 533 533 HOH HOH E . D 4 HOH 127 534 534 HOH HOH E . D 4 HOH 128 535 535 HOH HOH E . D 4 HOH 129 536 536 HOH HOH E . D 4 HOH 130 537 537 HOH HOH E . D 4 HOH 131 538 538 HOH HOH E . D 4 HOH 132 539 539 HOH HOH E . D 4 HOH 133 540 540 HOH HOH E . D 4 HOH 134 541 541 HOH HOH E . D 4 HOH 135 542 542 HOH HOH E . D 4 HOH 136 543 543 HOH HOH E . D 4 HOH 137 544 544 HOH HOH E . D 4 HOH 138 545 545 HOH HOH E . D 4 HOH 139 546 546 HOH HOH E . D 4 HOH 140 548 548 HOH HOH E . D 4 HOH 141 549 549 HOH HOH E . D 4 HOH 142 550 550 HOH HOH E . D 4 HOH 143 551 551 HOH HOH E . D 4 HOH 144 552 552 HOH HOH E . D 4 HOH 145 553 553 HOH HOH E . D 4 HOH 146 554 554 HOH HOH E . D 4 HOH 147 555 555 HOH HOH E . D 4 HOH 148 556 556 HOH HOH E . D 4 HOH 149 557 557 HOH HOH E . D 4 HOH 150 558 558 HOH HOH E . D 4 HOH 151 559 559 HOH HOH E . D 4 HOH 152 560 560 HOH HOH E . D 4 HOH 153 561 561 HOH HOH E . D 4 HOH 154 562 562 HOH HOH E . D 4 HOH 155 563 563 HOH HOH E . D 4 HOH 156 564 564 HOH HOH E . D 4 HOH 157 565 565 HOH HOH E . D 4 HOH 158 566 566 HOH HOH E . D 4 HOH 159 567 567 HOH HOH E . D 4 HOH 160 568 568 HOH HOH E . D 4 HOH 161 569 569 HOH HOH E . D 4 HOH 162 570 570 HOH HOH E . D 4 HOH 163 571 571 HOH HOH E . D 4 HOH 164 572 572 HOH HOH E . D 4 HOH 165 573 573 HOH HOH E . D 4 HOH 166 574 574 HOH HOH E . D 4 HOH 167 575 575 HOH HOH E . D 4 HOH 168 580 580 HOH HOH E . D 4 HOH 169 582 582 HOH HOH E . D 4 HOH 170 583 583 HOH HOH E . D 4 HOH 171 584 584 HOH HOH E . D 4 HOH 172 585 585 HOH HOH E . D 4 HOH 173 586 586 HOH HOH E . D 4 HOH 174 587 587 HOH HOH E . D 4 HOH 175 588 588 HOH HOH E . D 4 HOH 176 589 589 HOH HOH E . D 4 HOH 177 590 590 HOH HOH E . D 4 HOH 178 591 591 HOH HOH E . D 4 HOH 179 592 592 HOH HOH E . D 4 HOH 180 593 593 HOH HOH E . D 4 HOH 181 594 594 HOH HOH E . D 4 HOH 182 595 595 HOH HOH E . D 4 HOH 183 596 596 HOH HOH E . D 4 HOH 184 597 597 HOH HOH E . D 4 HOH 185 599 599 HOH HOH E . D 4 HOH 186 600 600 HOH HOH E . D 4 HOH 187 601 601 HOH HOH E . D 4 HOH 188 602 602 HOH HOH E . E 4 HOH 1 424 424 HOH HOH I . E 4 HOH 2 487 487 HOH HOH I . E 4 HOH 3 491 491 HOH HOH I . E 4 HOH 4 492 492 HOH HOH I . E 4 HOH 5 499 499 HOH HOH I . E 4 HOH 6 530 530 HOH HOH I . E 4 HOH 7 532 532 HOH HOH I . E 4 HOH 8 547 547 HOH HOH I . E 4 HOH 9 576 576 HOH HOH I . E 4 HOH 10 577 577 HOH HOH I . E 4 HOH 11 578 578 HOH HOH I . E 4 HOH 12 579 579 HOH HOH I . E 4 HOH 13 581 581 HOH HOH I . E 4 HOH 14 598 598 HOH HOH I . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 89 E ASN 60 G ASN 'GLYCOSYLATION SITE' 2 B TYS 9 I TYS 63 ? TYR O-SULFO-L-TYROSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 E HOH 454 ? D HOH . 2 1 E HOH 456 ? D HOH . 3 1 E HOH 483 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-12-20 2 'Structure model' 1 1 2008-03-03 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-12-12 5 'Structure model' 1 4 2013-03-13 6 'Structure model' 1 5 2017-11-29 7 'Structure model' 1 6 2019-07-17 8 'Structure model' 1 7 2019-08-14 9 'Structure model' 1 8 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 9 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' 'Structure summary' 7 3 'Structure model' 'Version format compliance' 8 4 'Structure model' Other 9 5 'Structure model' Other 10 6 'Structure model' 'Derived calculations' 11 6 'Structure model' Other 12 7 'Structure model' 'Data collection' 13 7 'Structure model' 'Derived calculations' 14 7 'Structure model' 'Refinement description' 15 8 'Structure model' 'Data collection' 16 8 'Structure model' 'Refinement description' 17 9 'Structure model' 'Data collection' 18 9 'Structure model' 'Derived calculations' 19 9 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' pdbx_database_status 2 6 'Structure model' struct_conf 3 6 'Structure model' struct_conf_type 4 7 'Structure model' software 5 7 'Structure model' struct_conn 6 8 'Structure model' software 7 9 'Structure model' chem_comp 8 9 'Structure model' entity 9 9 'Structure model' pdbx_chem_comp_identifier 10 9 'Structure model' pdbx_entity_nonpoly 11 9 'Structure model' struct_conn 12 9 'Structure model' struct_site 13 9 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_pdbx_database_status.process_site' 2 7 'Structure model' '_software.classification' 3 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 8 'Structure model' '_software.classification' 5 9 'Structure model' '_chem_comp.name' 6 9 'Structure model' '_chem_comp.type' 7 9 'Structure model' '_entity.pdbx_description' 8 9 'Structure model' '_pdbx_entity_nonpoly.name' 9 9 'Structure model' '_struct_conn.pdbx_role' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 PROLSQ refinement . ? 2 X-PLOR refinement . ? 3 X-PLOR phasing . ? 4 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ;SHEET THE SHEET PRESENTED AS *B1* ON SHEET RECORDS BELOW IS ACTUALLY A SIX-STRANDED BETA-BARREL. THIS IS REPRESENTED BY A SEVEN-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEET PRESENTED AS *B2* ON SHEET RECORDS BELOW IS ACTUALLY A SEVEN-STRANDED BETA-BARREL. THIS IS REPRESENTED BY AN EIGHT-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. ; # _pdbx_entry_details.entry_id 1HAG _pdbx_entry_details.compound_details ;PEPTIDE ASP I 55 - LEU 64 AT THE EXOSITE IS HIRUGEN MOLECULE, WHICH IS PART OF HIRUDIN 53 - 65. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD2 E ASP 221 ? ? O E HOH 460 ? ? 1.86 2 1 O E LEU 64 ? ? O E HOH 449 ? ? 2.09 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C E SER 1 E ? N E GLY 1 D ? CA E GLY 1 D ? 135.24 122.30 12.94 2.10 Y 2 1 CA E ASP 1 A ? CB E ASP 1 A ? CG E ASP 1 A ? 98.31 113.40 -15.09 2.20 N 3 1 CB E ASP 1 A ? CG E ASP 1 A ? OD1 E ASP 1 A ? 109.66 118.30 -8.64 0.90 N 4 1 CA E LEU 3 ? ? CB E LEU 3 ? ? CG E LEU 3 ? ? 130.21 115.30 14.91 2.30 N 5 1 NE E ARG 4 ? ? CZ E ARG 4 ? ? NH1 E ARG 4 ? ? 116.31 120.30 -3.99 0.50 N 6 1 NE E ARG 4 ? ? CZ E ARG 4 ? ? NH2 E ARG 4 ? ? 127.35 120.30 7.05 0.50 N 7 1 CB E GLU 13 ? ? CA E GLU 13 ? ? C E GLU 13 ? ? 95.32 110.40 -15.08 2.00 N 8 1 N E THR 14 B ? CA E THR 14 B ? CB E THR 14 B ? 98.66 110.30 -11.64 1.90 N 9 1 NE E ARG 14 D ? CZ E ARG 14 D ? NH1 E ARG 14 D ? 126.12 120.30 5.82 0.50 N 10 1 NE E ARG 14 D ? CZ E ARG 14 D ? NH2 E ARG 14 D ? 113.97 120.30 -6.33 0.50 N 11 1 CB E ASP 14 L ? CG E ASP 14 L ? OD1 E ASP 14 L ? 112.34 118.30 -5.96 0.90 N 12 1 OE1 E GLU 18 ? ? CD E GLU 18 ? ? OE2 E GLU 18 ? ? 115.90 123.30 -7.40 1.20 N 13 1 CB E ASP 21 ? ? CG E ASP 21 ? ? OD1 E ASP 21 ? ? 129.02 118.30 10.72 0.90 N 14 1 CB E ASP 21 ? ? CG E ASP 21 ? ? OD2 E ASP 21 ? ? 110.35 118.30 -7.95 0.90 N 15 1 CA E GLU 23 ? ? CB E GLU 23 ? ? CG E GLU 23 ? ? 128.11 113.40 14.71 2.20 N 16 1 CA E LEU 33 ? ? CB E LEU 33 ? ? CG E LEU 33 ? ? 142.77 115.30 27.47 2.30 N 17 1 CA E CYS 42 ? ? CB E CYS 42 ? ? SG E CYS 42 ? ? 122.68 114.20 8.48 1.10 N 18 1 CB E ALA 44 ? ? CA E ALA 44 ? ? C E ALA 44 ? ? 119.94 110.10 9.84 1.50 N 19 1 CB E SER 48 ? ? CA E SER 48 ? ? C E SER 48 ? ? 122.45 110.10 12.35 1.90 N 20 1 CB E ASP 49 ? ? CG E ASP 49 ? ? OD1 E ASP 49 ? ? 124.16 118.30 5.86 0.90 N 21 1 CB E ALA 55 ? ? CA E ALA 55 ? ? C E ALA 55 ? ? 119.21 110.10 9.11 1.50 N 22 1 CB E TYR 60 A ? CG E TYR 60 A ? CD2 E TYR 60 A ? 126.23 121.00 5.23 0.60 N 23 1 CB E TYR 60 A ? CG E TYR 60 A ? CD1 E TYR 60 A ? 113.99 121.00 -7.01 0.60 N 24 1 CB E ASP 60 E ? CG E ASP 60 E ? OD1 E ASP 60 E ? 109.99 118.30 -8.31 0.90 N 25 1 O E ASP 60 E ? C E ASP 60 E ? N E LYS 60 F ? 132.56 122.70 9.86 1.60 Y 26 1 CA E THR 60 I ? CB E THR 60 I ? OG1 E THR 60 I ? 95.44 109.00 -13.56 2.10 N 27 1 CA E THR 60 I ? CB E THR 60 I ? CG2 E THR 60 I ? 123.25 112.40 10.85 1.40 N 28 1 NH1 E ARG 67 ? ? CZ E ARG 67 ? ? NH2 E ARG 67 ? ? 111.40 119.40 -8.00 1.10 N 29 1 NE E ARG 67 ? ? CZ E ARG 67 ? ? NH2 E ARG 67 ? ? 128.45 120.30 8.15 0.50 N 30 1 NE E ARG 73 ? ? CZ E ARG 73 ? ? NH2 E ARG 73 ? ? 123.93 120.30 3.63 0.50 N 31 1 NE E ARG 75 ? ? CZ E ARG 75 ? ? NH1 E ARG 75 ? ? 114.40 120.30 -5.90 0.50 N 32 1 NE E ARG 75 ? ? CZ E ARG 75 ? ? NH2 E ARG 75 ? ? 131.16 120.30 10.86 0.50 N 33 1 CB E TYR 76 ? ? CG E TYR 76 ? ? CD2 E TYR 76 ? ? 114.91 121.00 -6.09 0.60 N 34 1 CB E TYR 76 ? ? CG E TYR 76 ? ? CD1 E TYR 76 ? ? 126.13 121.00 5.13 0.60 N 35 1 OE1 E GLU 77 ? ? CD E GLU 77 ? ? OE2 E GLU 77 ? ? 131.84 123.30 8.54 1.20 N 36 1 NE E ARG 77 A ? CZ E ARG 77 A ? NH2 E ARG 77 A ? 116.03 120.30 -4.27 0.50 N 37 1 CG E GLU 80 ? ? CD E GLU 80 ? ? OE2 E GLU 80 ? ? 102.82 118.30 -15.48 2.00 N 38 1 NE E ARG 93 ? ? CZ E ARG 93 ? ? NH1 E ARG 93 ? ? 123.66 120.30 3.36 0.50 N 39 1 CB E TYR 94 ? ? CG E TYR 94 ? ? CD2 E TYR 94 ? ? 114.99 121.00 -6.01 0.60 N 40 1 CG E TYR 94 ? ? CD1 E TYR 94 ? ? CE1 E TYR 94 ? ? 115.70 121.30 -5.60 0.80 N 41 1 CD E ARG 97 ? ? NE E ARG 97 ? ? CZ E ARG 97 ? ? 132.42 123.60 8.82 1.40 N 42 1 NE E ARG 97 ? ? CZ E ARG 97 ? ? NH1 E ARG 97 ? ? 123.31 120.30 3.01 0.50 N 43 1 CB E ASP 100 ? ? CG E ASP 100 ? ? OD1 E ASP 100 ? ? 128.16 118.30 9.86 0.90 N 44 1 CB E ASP 100 ? ? CG E ASP 100 ? ? OD2 E ASP 100 ? ? 112.17 118.30 -6.13 0.90 N 45 1 NE E ARG 101 ? ? CZ E ARG 101 ? ? NH1 E ARG 101 ? ? 116.62 120.30 -3.68 0.50 N 46 1 CB E ASP 102 ? ? CG E ASP 102 ? ? OD1 E ASP 102 ? ? 127.26 118.30 8.96 0.90 N 47 1 N E ALA 104 ? ? CA E ALA 104 ? ? CB E ALA 104 ? ? 121.63 110.10 11.53 1.40 N 48 1 O E LEU 105 ? ? C E LEU 105 ? ? N E MET 106 ? ? 133.71 122.70 11.01 1.60 Y 49 1 O E ALA 113 ? ? C E ALA 113 ? ? N E PHE 114 ? ? 132.69 122.70 9.99 1.60 Y 50 1 C E TYR 117 ? ? N E ILE 118 ? ? CA E ILE 118 ? ? 137.64 121.70 15.95 2.50 Y 51 1 CD E ARG 126 ? ? NE E ARG 126 ? ? CZ E ARG 126 ? ? 111.29 123.60 -12.31 1.40 N 52 1 NE E ARG 126 ? ? CZ E ARG 126 ? ? NH1 E ARG 126 ? ? 111.45 120.30 -8.85 0.50 N 53 1 NE E ARG 126 ? ? CZ E ARG 126 ? ? NH2 E ARG 126 ? ? 125.96 120.30 5.66 0.50 N 54 1 CB E ALA 129 ? ? CA E ALA 129 ? ? C E ALA 129 ? ? 125.01 110.10 14.91 1.50 N 55 1 NE E ARG 137 ? ? CZ E ARG 137 ? ? NH1 E ARG 137 ? ? 114.83 120.30 -5.47 0.50 N 56 1 NE E ARG 137 ? ? CZ E ARG 137 ? ? NH2 E ARG 137 ? ? 126.61 120.30 6.31 0.50 N 57 1 CA E VAL 154 ? ? CB E VAL 154 ? ? CG1 E VAL 154 ? ? 121.41 110.90 10.51 1.50 N 58 1 NE E ARG 165 ? ? CZ E ARG 165 ? ? NH1 E ARG 165 ? ? 117.26 120.30 -3.04 0.50 N 59 1 NE E ARG 175 ? ? CZ E ARG 175 ? ? NH1 E ARG 175 ? ? 127.37 120.30 7.07 0.50 N 60 1 NE E ARG 175 ? ? CZ E ARG 175 ? ? NH2 E ARG 175 ? ? 117.23 120.30 -3.07 0.50 N 61 1 CA E ILE 176 ? ? CB E ILE 176 ? ? CG2 E ILE 176 ? ? 125.90 110.90 15.00 2.00 N 62 1 CB E ASP 178 ? ? CG E ASP 178 ? ? OD1 E ASP 178 ? ? 123.95 118.30 5.65 0.90 N 63 1 CB E ASP 178 ? ? CG E ASP 178 ? ? OD2 E ASP 178 ? ? 112.64 118.30 -5.66 0.90 N 64 1 CA E ASN 179 ? ? C E ASN 179 ? ? O E ASN 179 ? ? 105.67 120.10 -14.43 2.10 N 65 1 CB E ASP 186 A ? CG E ASP 186 A ? OD1 E ASP 186 A ? 125.37 118.30 7.07 0.90 N 66 1 CB E ASP 186 A ? CG E ASP 186 A ? OD2 E ASP 186 A ? 110.45 118.30 -7.85 0.90 N 67 1 CD E ARG 187 ? ? NE E ARG 187 ? ? CZ E ARG 187 ? ? 140.59 123.60 16.99 1.40 N 68 1 NE E ARG 187 ? ? CZ E ARG 187 ? ? NH1 E ARG 187 ? ? 127.47 120.30 7.17 0.50 N 69 1 NE E ARG 187 ? ? CZ E ARG 187 ? ? NH2 E ARG 187 ? ? 117.10 120.30 -3.20 0.50 N 70 1 CB E PHE 204 A ? CG E PHE 204 A ? CD1 E PHE 204 A ? 115.89 120.80 -4.91 0.70 N 71 1 NE E ARG 206 ? ? CZ E ARG 206 ? ? NH1 E ARG 206 ? ? 124.72 120.30 4.42 0.50 N 72 1 NE E ARG 206 ? ? CZ E ARG 206 ? ? NH2 E ARG 206 ? ? 116.97 120.30 -3.33 0.50 N 73 1 CA E CYS 220 ? ? CB E CYS 220 ? ? SG E CYS 220 ? ? 122.34 114.20 8.14 1.10 N 74 1 NE E ARG 221 A ? CZ E ARG 221 A ? NH2 E ARG 221 A ? 123.54 120.30 3.24 0.50 N 75 1 OD1 E ASP 222 ? ? CG E ASP 222 ? ? OD2 E ASP 222 ? ? 135.26 123.30 11.96 1.90 N 76 1 CB E ASP 222 ? ? CG E ASP 222 ? ? OD2 E ASP 222 ? ? 110.60 118.30 -7.70 0.90 N 77 1 O E PHE 232 ? ? C E PHE 232 ? ? N E ARG 233 ? ? 110.02 122.70 -12.68 1.60 Y 78 1 NE E ARG 233 ? ? CZ E ARG 233 ? ? NH1 E ARG 233 ? ? 112.69 120.30 -7.61 0.50 N 79 1 NE E ARG 233 ? ? CZ E ARG 233 ? ? NH2 E ARG 233 ? ? 129.93 120.30 9.63 0.50 N 80 1 CA E LYS 240 ? ? C E LYS 240 ? ? N E VAL 241 ? ? 130.59 117.20 13.39 2.20 Y 81 1 CA E ASP 243 ? ? CB E ASP 243 ? ? CG E ASP 243 ? ? 127.42 113.40 14.02 2.20 N 82 1 CB E ASP 243 ? ? CG E ASP 243 ? ? OD1 E ASP 243 ? ? 132.11 118.30 13.81 0.90 N 83 1 CB E ASP 243 ? ? CG E ASP 243 ? ? OD2 E ASP 243 ? ? 111.82 118.30 -6.48 0.90 N 84 1 C E PHE 245 ? ? N E GLY 246 ? ? CA E GLY 246 ? ? 134.91 122.30 12.61 2.10 Y 85 1 CA E GLU 247 ? ? C E GLU 247 ? ? O E GLU 247 ? ? 107.03 120.10 -13.07 2.10 N 86 1 CB I ASP 55 ? ? CA I ASP 55 ? ? C I ASP 55 ? ? 122.74 110.40 12.34 2.00 N 87 1 CG I GLU 58 ? ? CD I GLU 58 ? ? OE1 I GLU 58 ? ? 130.41 118.30 12.11 2.00 N 88 1 CA I GLU 61 ? ? CB I GLU 61 ? ? CG I GLU 61 ? ? 127.16 113.40 13.76 2.20 N 89 1 OE1 I GLU 62 ? ? CD I GLU 62 ? ? OE2 I GLU 62 ? ? 131.36 123.30 8.06 1.20 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE E 7 ? ? -123.92 -62.05 2 1 GLU E 14 H ? -69.15 -169.48 3 1 ASP E 14 L ? -36.06 109.30 4 1 ARG E 15 ? ? -34.80 105.24 5 1 ILE E 16 ? ? -107.71 76.28 6 1 GLU E 18 ? ? -62.78 -162.77 7 1 SER E 20 ? ? -50.27 170.19 8 1 CYS E 42 ? ? -170.10 -179.30 9 1 TYR E 60 A ? -156.44 81.75 10 1 ASN E 60 G ? -159.87 78.41 11 1 ILE E 79 ? ? -124.15 -63.76 12 1 GLU E 97 A ? -103.91 -70.74 13 1 PRO E 111 ? ? -49.25 159.06 14 1 LEU E 130 ? ? -66.22 87.30 15 1 TRP E 148 ? ? -145.53 -63.04 16 1 ASN E 149 B ? -146.32 40.17 17 1 VAL E 149 C ? -25.51 91.41 18 1 GLN E 151 ? ? 31.48 85.02 19 1 PRO E 152 ? ? -46.83 152.23 20 1 ASN E 179 ? ? -79.22 29.01 21 1 ASP E 186 A ? -166.20 -168.58 22 1 GLU E 186 B ? -57.52 -72.85 23 1 SER E 214 ? ? -97.16 -61.52 24 1 CYS E 220 ? ? -66.72 71.45 25 1 ASP E 221 ? ? -163.97 -64.07 26 1 ARG E 221 A ? -163.53 -34.01 27 1 ILE E 242 ? ? -61.52 -71.26 28 1 ASP E 243 ? ? -43.33 -17.59 29 1 PRO I 60 ? ? -38.64 125.86 30 1 GLU I 61 ? ? -48.92 -16.95 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG E 14 D ? 0.123 'SIDE CHAIN' 2 1 ARG E 15 ? ? 0.087 'SIDE CHAIN' 3 1 ARG E 73 ? ? 0.301 'SIDE CHAIN' 4 1 ARG E 126 ? ? 0.094 'SIDE CHAIN' 5 1 ARG E 175 ? ? 0.142 'SIDE CHAIN' # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 water HOH #