HEADER TRANSCRIPTION/DNA 16-SEP-91 1HDD TITLE CRYSTAL STRUCTURE OF AN ENGRAILED HOMEODOMAIN-DNA COMPLEX AT 2.8 TITLE 2 ANGSTROMS RESOLUTION: A FRAMEWORK FOR UNDERSTANDING HOMEODOMAIN-DNA TITLE 3 INTERACTIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*TP*TP*TP*TP*GP*CP*CP*AP*TP*GP*TP*AP*AP*TP*TP*AP*C P*CP*TP*AP*A)- COMPND 4 3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*AP*TP*TP*AP*GP*GP*TP*AP*AP*TP*TP*AP*CP*AP*TP*GP*G P*CP*AP*AP*A)- COMPND 10 3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: PROTEIN (ENGRAILED HOMEODOMAIN); COMPND 15 CHAIN: C, D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 11 ORGANISM_COMMON: FRUIT FLY; SOURCE 12 ORGANISM_TAXID: 7227; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-DNA COMPLEX, DOUBLE HELIX, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.R.KISSINGER,B.LIU,E.MARTIN-BLANCO,T.B.KORNBERG,C.O.PABO REVDAT 5 21-DEC-22 1HDD 1 SEQADV REVDAT 4 15-FEB-17 1HDD 1 AUTHOR SOURCE VERSN REVDAT 3 24-FEB-09 1HDD 1 VERSN REVDAT 2 01-APR-03 1HDD 1 JRNL REVDAT 1 15-JAN-92 1HDD 0 JRNL AUTH C.R.KISSINGER,B.S.LIU,E.MARTIN-BLANCO,T.B.KORNBERG,C.O.PABO JRNL TITL CRYSTAL STRUCTURE OF AN ENGRAILED HOMEODOMAIN-DNA COMPLEX AT JRNL TITL 2 2.8 A RESOLUTION: A FRAMEWORK FOR UNDERSTANDING JRNL TITL 3 HOMEODOMAIN-DNA INTERACTIONS. JRNL REF CELL(CAMBRIDGE,MASS.) V. 63 579 1990 JRNL REFN ISSN 0092-8674 JRNL PMID 1977522 JRNL DOI 10.1016/0092-8674(90)90453-L REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.LIU,C.R.KISSINGER,C.O.PABO,E.MARTIN-BLANCO,T.B.KORNBERG REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION STUDIES OF REMARK 1 TITL 2 THE ENGRAILED HOMEODOMAIN AND OF AN ENGRAILED HOMEODOMAIN REMARK 1 TITL 3 COMPLEX REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 171 257 1990 REMARK 1 REFN ISSN 0006-291X REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 9072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 962 REMARK 3 NUCLEIC ACID ATOMS : 855 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 BOND ANGLES (DEGREES) : 2.590 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HDD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173793. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.70 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : XENTRONICS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9072 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.70, VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.60000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.60000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -1 REMARK 465 ASP C 0 REMARK 465 GLU C 1 REMARK 465 LYS C 2 REMARK 465 MET D -1 REMARK 465 ASP D 0 REMARK 465 GLU D 1 REMARK 465 LYS D 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG C 18 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 3 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 18 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT A 2 O3' DT A 2 C3' -0.047 REMARK 500 DT A 9 N1 DT A 9 C2 0.050 REMARK 500 DG A 10 O3' DG A 10 C3' -0.045 REMARK 500 DA A 12 O3' DA A 12 C3' -0.039 REMARK 500 DC A 18 O3' DC A 18 C3' -0.072 REMARK 500 DT A 19 O3' DT A 19 C3' -0.072 REMARK 500 DT B 28 O3' DT B 28 C3' -0.094 REMARK 500 DA B 29 O3' DA B 29 C3' -0.054 REMARK 500 DA B 30 O3' DA B 30 C3' -0.040 REMARK 500 DT B 31 C1' DT B 31 N1 -0.088 REMARK 500 DT B 31 N1 DT B 31 C2 -0.056 REMARK 500 DA B 35 O3' DA B 35 C3' 0.084 REMARK 500 DC B 39 O3' DC B 39 C3' -0.037 REMARK 500 GLU C 11 CD GLU C 11 OE2 0.088 REMARK 500 GLU C 19 CD GLU C 19 OE2 0.069 REMARK 500 GLU C 22 CD GLU C 22 OE2 0.094 REMARK 500 GLU C 37 CD GLU C 37 OE2 0.068 REMARK 500 GLU C 42 CD GLU C 42 OE1 -0.068 REMARK 500 GLU D 11 CD GLU D 11 OE2 0.072 REMARK 500 GLU D 22 CD GLU D 22 OE2 0.078 REMARK 500 GLU D 28 CD GLU D 28 OE2 0.077 REMARK 500 GLU D 37 CD GLU D 37 OE2 0.084 REMARK 500 GLU D 42 CD GLU D 42 OE2 0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT A 2 O5' - C5' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 DT A 3 C3' - C2' - C1' ANGL. DEV. = -8.6 DEGREES REMARK 500 DT A 3 O4' - C1' - N1 ANGL. DEV. = 5.7 DEGREES REMARK 500 DT A 3 C3' - O3' - P ANGL. DEV. = -7.9 DEGREES REMARK 500 DT A 4 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DT A 4 O4' - C1' - N1 ANGL. DEV. = 7.5 DEGREES REMARK 500 DC A 7 C1' - O4' - C4' ANGL. DEV. = -8.6 DEGREES REMARK 500 DC A 7 O4' - C1' - N1 ANGL. DEV. = 7.5 DEGREES REMARK 500 DC A 7 C3' - O3' - P ANGL. DEV. = -10.6 DEGREES REMARK 500 DA A 8 C3' - O3' - P ANGL. DEV. = -9.0 DEGREES REMARK 500 DT A 9 P - O5' - C5' ANGL. DEV. = -13.6 DEGREES REMARK 500 DT A 9 C1' - O4' - C4' ANGL. DEV. = -6.9 DEGREES REMARK 500 DT A 9 N1 - C2 - O2 ANGL. DEV. = 5.9 DEGREES REMARK 500 DT A 9 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 DT A 9 C4 - C5 - C7 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT A 9 C6 - C5 - C7 ANGL. DEV. = -4.1 DEGREES REMARK 500 DG A 10 O5' - C5' - C4' ANGL. DEV. = -5.2 DEGREES REMARK 500 DG A 10 O4' - C1' - C2' ANGL. DEV. = 3.7 DEGREES REMARK 500 DG A 10 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG A 10 C3' - O3' - P ANGL. DEV. = 10.7 DEGREES REMARK 500 DT A 11 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DT A 11 O4' - C1' - C2' ANGL. DEV. = -6.7 DEGREES REMARK 500 DT A 11 C4 - C5 - C7 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT A 11 C6 - C5 - C7 ANGL. DEV. = -3.6 DEGREES REMARK 500 DA A 12 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA A 13 C4' - C3' - C2' ANGL. DEV. = -5.9 DEGREES REMARK 500 DA A 13 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DA A 13 O4' - C1' - N9 ANGL. DEV. = 9.5 DEGREES REMARK 500 DT A 14 O4' - C1' - C2' ANGL. DEV. = 3.7 DEGREES REMARK 500 DT A 14 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 DA A 16 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 DA A 21 O4' - C1' - N9 ANGL. DEV. = 5.7 DEGREES REMARK 500 DA B 22 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT B 23 O4' - C1' - N1 ANGL. DEV. = 5.7 DEGREES REMARK 500 DT B 24 O4' - C1' - N1 ANGL. DEV. = 5.4 DEGREES REMARK 500 DA B 25 C3' - C2' - C1' ANGL. DEV. = -6.6 DEGREES REMARK 500 DA B 25 O4' - C1' - N9 ANGL. DEV. = 5.7 DEGREES REMARK 500 DG B 26 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DG B 26 O4' - C1' - N9 ANGL. DEV. = 11.2 DEGREES REMARK 500 DG B 27 O5' - C5' - C4' ANGL. DEV. = -5.1 DEGREES REMARK 500 DT B 28 O5' - C5' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 DT B 28 O4' - C1' - N1 ANGL. DEV. = -4.2 DEGREES REMARK 500 DA B 29 P - O5' - C5' ANGL. DEV. = -10.7 DEGREES REMARK 500 DT B 31 O4' - C1' - C2' ANGL. DEV. = 3.4 DEGREES REMARK 500 DT B 31 C6 - N1 - C2 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT B 31 C3' - O3' - P ANGL. DEV. = -9.1 DEGREES REMARK 500 DT B 32 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DT B 32 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 DA B 33 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC B 34 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 69 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER C 36 -74.64 -38.68 REMARK 500 GLU C 42 -7.50 -51.25 REMARK 500 ARG C 53 -30.15 -38.16 REMARK 500 ASN D 23 131.37 -170.23 REMARK 500 GLN D 32 -75.38 -53.99 REMARK 500 GLN D 33 -51.22 -28.54 REMARK 500 LYS D 58 -19.99 -23.54 REMARK 500 REMARK 500 REMARK: NULL DBREF 1HDD C 0 59 UNP P02836 HMEN_DROME 453 512 DBREF 1HDD D 0 59 UNP P02836 HMEN_DROME 453 512 DBREF 1HDD A 1 21 PDB 1HDD 1HDD 1 21 DBREF 1HDD B 22 42 PDB 1HDD 1HDD 22 42 SEQADV 1HDD MET C -1 UNP P02836 INITIATING METHIONINE SEQADV 1HDD MET D -1 UNP P02836 INITIATING METHIONINE SEQRES 1 A 21 DT DT DT DT DG DC DC DA DT DG DT DA DA SEQRES 2 A 21 DT DT DA DC DC DT DA DA SEQRES 1 B 21 DA DT DT DA DG DG DT DA DA DT DT DA DC SEQRES 2 B 21 DA DT DG DG DC DA DA DA SEQRES 1 C 61 MET ASP GLU LYS ARG PRO ARG THR ALA PHE SER SER GLU SEQRES 2 C 61 GLN LEU ALA ARG LEU LYS ARG GLU PHE ASN GLU ASN ARG SEQRES 3 C 61 TYR LEU THR GLU ARG ARG ARG GLN GLN LEU SER SER GLU SEQRES 4 C 61 LEU GLY LEU ASN GLU ALA GLN ILE LYS ILE TRP PHE GLN SEQRES 5 C 61 ASN LYS ARG ALA LYS ILE LYS LYS SER SEQRES 1 D 61 MET ASP GLU LYS ARG PRO ARG THR ALA PHE SER SER GLU SEQRES 2 D 61 GLN LEU ALA ARG LEU LYS ARG GLU PHE ASN GLU ASN ARG SEQRES 3 D 61 TYR LEU THR GLU ARG ARG ARG GLN GLN LEU SER SER GLU SEQRES 4 D 61 LEU GLY LEU ASN GLU ALA GLN ILE LYS ILE TRP PHE GLN SEQRES 5 D 61 ASN LYS ARG ALA LYS ILE LYS LYS SER HELIX 1 C1 SER C 10 GLU C 22 1 13 HELIX 2 C2 GLU C 28 LEU C 38 1 11 HELIX 3 C3 GLU C 42 LYS C 58 1 17 HELIX 4 D1 SER D 10 GLU D 22 1 13 HELIX 5 D2 GLU D 28 LEU D 38 1 11 HELIX 6 D3 GLU D 42 LYS D 58 1 17 CRYST1 131.200 45.500 72.900 90.00 119.00 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007622 0.000000 0.004225 0.00000 SCALE2 0.000000 0.021978 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015684 0.00000