HEADER ENDOCYTOSIS/EXOCYTOSIS 24-NOV-00 1HES TITLE MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), COMPLEXED TITLE 2 WITH P-SELECTIN INTERNALIZATION PEPTIDE SHLGTYGVFTNAA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLATHRIN COAT ASSEMBLY PROTEIN AP50; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: INTERNALIZATION SIGNAL BINDING DOMAIN; COMPND 5 SYNONYM: CLATHRIN COAT ASSOCIATED PROTEIN AP50, PLASMA MEMBRANE COMPND 6 ADAPTOR AP-2 50 KDA PROTEIN, HA2 50 KDA SUBUNIT, CLATHRIN ASSEMBLY COMPND 7 PROTEIN COMPLEX 2 MEDIUM CHAIN, AP-2 MU 2 CHAIN, MU2 ADAPTIN; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: THE FIRST SEVEN RESIDUES OF THE POLYMER MAKE UP A HIS- COMPND 10 TAG; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: P-SELECTIN PEPTIDE; COMPND 13 CHAIN: P; COMPND 14 FRAGMENT: INTERNALIZATION SIGNAL; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: PEPTIDE INTERNALISATION SIGNAL MOTIF FROM P-SELECTIN COMPND 17 SHLGTYGVFTNAAFDPSP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: AP50; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PMW172H6; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMW172H6; SOURCE 11 EXPRESSION_SYSTEM_GENE: AP50; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606 KEYWDS ENDOCYTOSIS/EXOCYTOSIS, ENDOCYTOSIS, ADAPTOR, PEPTIDE COMPLEX, KEYWDS 2 PEPTIDE BINDING PROTE, ENDOCYTOSIS-EXOCYTOSIS COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.J.OWEN,P.R.EVANS,S.A.GREEN REVDAT 7 13-DEC-23 1HES 1 REMARK REVDAT 6 15-MAY-19 1HES 1 REMARK REVDAT 5 08-MAY-19 1HES 1 REMARK REVDAT 4 24-OCT-18 1HES 1 SOURCE REVDAT 3 24-FEB-09 1HES 1 VERSN REVDAT 2 16-AUG-01 1HES 1 REMARK SHEET MASTER REVDAT 1 31-MAY-01 1HES 0 JRNL AUTH D.J.OWEN,H.SETIADI,P.R.EVANS,R.P.MCEVER,S.A.GREEN JRNL TITL A THIRD SPECIFICITY-DETERMINING SITE IN MU 2 ADAPTIN FOR JRNL TITL 2 SEQUENCES UPSTREAM OF YXX PHI SORTING MOTIFS JRNL REF TRAFFIC V. 2 105 2001 JRNL REFN ISSN 1398-9219 JRNL PMID 11247301 JRNL DOI 10.1034/J.1600-0854.2001.020205.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.J.OWEN,P.R.EVANS REMARK 1 TITL A STRUCTURAL EXPLANATION FOR THE RECOGNITION OF REMARK 1 TITL 2 TYROSINE-BASED ENDOCYTOTIC SIGNALS REMARK 1 REF SCIENCE V. 282 1327 1998 REMARK 1 REFN ISSN 0036-8075 REMARK 1 PMID 9812899 REMARK 1 DOI 10.1126/SCIENCE.282.5392.1327 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13045 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 671 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2105 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 90.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.442 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.329 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.359 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.910 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1HES COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-NOV-00. REMARK 100 THE DEPOSITION ID IS D_1290005581. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.10 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.877 REMARK 200 MONOCHROMATOR : YES REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13729 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 22.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : 0.14600 REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 14.70 REMARK 200 R MERGE FOR SHELL (I) : 0.01060 REMARK 200 R SYM FOR SHELL (I) : 0.01060 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1BW8 REMARK 200 REMARK 200 REMARK: ISOMORPHOUS TO 1BW8 REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP, 2.2M NACL, 0.4M NA/K REMARK 280 PHOSPHATE, 10MM DTT 0.1M MES PH 7.1, 15% GLYCEROL, 16 DEGREES, REMARK 280 MOLAR RATIO OF PEPTIDE TO PROTEIN 3:1, PH 7.10, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.09000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.18000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 25.09000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.18000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 151 REMARK 465 HIS A 152 REMARK 465 HIS A 153 REMARK 465 HIS A 154 REMARK 465 HIS A 155 REMARK 465 HIS A 156 REMARK 465 HIS A 157 REMARK 465 GLN A 158 REMARK 465 VAL A 221 REMARK 465 ILE A 222 REMARK 465 GLU A 223 REMARK 465 LYS A 224 REMARK 465 GLN A 225 REMARK 465 GLY A 226 REMARK 465 LYS A 227 REMARK 465 GLY A 228 REMARK 465 THR A 229 REMARK 465 ALA A 230 REMARK 465 ASP A 231 REMARK 465 GLU A 232 REMARK 465 THR A 233 REMARK 465 SER A 234 REMARK 465 LYS A 235 REMARK 465 SER A 236 REMARK 465 GLY A 237 REMARK 465 LYS A 256 REMARK 465 PHE A 257 REMARK 465 ASP A 258 REMARK 465 SER A 259 REMARK 465 SER P 1 REMARK 465 ASN P 11 REMARK 465 ALA P 12 REMARK 465 ALA P 13 REMARK 465 PHE P 14 REMARK 465 ASP P 15 REMARK 465 PRO P 16 REMARK 465 SER P 17 REMARK 465 PRO P 18 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 169 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 238 CG CD CE NZ REMARK 470 ARG A 261 CD NE CZ NH1 NH2 REMARK 470 LYS A 281 CD CE NZ REMARK 470 ARG A 298 CD NE CZ NH1 NH2 REMARK 470 LYS A 341 CD CE NZ REMARK 470 THR P 10 C O CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 319 OE1 GLU A 391 2.09 REMARK 500 O SER A 207 OH TYR A 413 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 179 CD GLU A 179 OE1 0.082 REMARK 500 GLU A 391 CD GLU A 391 OE2 0.068 REMARK 500 ILE A 430 CA ILE A 430 CB -0.173 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 269 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ILE A 430 CB - CA - C ANGL. DEV. = -15.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 193 139.73 -175.19 REMARK 500 SER A 240 116.72 -169.70 REMARK 500 CYS A 251 -6.50 -56.55 REMARK 500 LEU A 254 -57.98 -24.63 REMARK 500 ASN A 310 76.47 -107.26 REMARK 500 ASN A 376 94.62 -68.21 REMARK 500 ASP A 377 -50.97 -28.99 REMARK 500 PRO A 393 42.52 -93.23 REMARK 500 ASN A 412 49.13 -99.89 REMARK 500 LEU P 3 133.62 -35.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BW8 RELATED DB: PDB REMARK 900 MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), REMARK 900 COMPLEXED WITH EGFR INTERNALIZATION PEPTIDE FYRALM REMARK 900 RELATED ID: 1BXX RELATED DB: PDB REMARK 900 MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), REMARK 900 COMPLEXED WITH TGN38 INTERNALIZATION PEPTIDE DYQRLN DBREF 1HES A 151 157 PDB 1HES 1HES 151 157 DBREF 1HES A 158 435 UNP P20172 AP50_HUMAN 158 435 DBREF 1HES P 1 18 UNP P16109 LEM3_HUMAN 813 830 SEQRES 1 A 285 MET HIS HIS HIS HIS HIS HIS GLN ILE GLY TRP ARG ARG SEQRES 2 A 285 GLU GLY ILE LYS TYR ARG ARG ASN GLU LEU PHE LEU ASP SEQRES 3 A 285 VAL LEU GLU SER VAL ASN LEU LEU MET SER PRO GLN GLY SEQRES 4 A 285 GLN VAL LEU SER ALA HIS VAL SER GLY ARG VAL VAL MET SEQRES 5 A 285 LYS SER TYR LEU SER GLY MET PRO GLU CYS LYS PHE GLY SEQRES 6 A 285 MET ASN ASP LYS ILE VAL ILE GLU LYS GLN GLY LYS GLY SEQRES 7 A 285 THR ALA ASP GLU THR SER LYS SER GLY LYS GLN SER ILE SEQRES 8 A 285 ALA ILE ASP ASP CYS THR PHE HIS GLN CYS VAL ARG LEU SEQRES 9 A 285 SER LYS PHE ASP SER GLU ARG SER ILE SER PHE ILE PRO SEQRES 10 A 285 PRO ASP GLY GLU PHE GLU LEU MET ARG TYR ARG THR THR SEQRES 11 A 285 LYS ASP ILE ILE LEU PRO PHE ARG VAL ILE PRO LEU VAL SEQRES 12 A 285 ARG GLU VAL GLY ARG THR LYS LEU GLU VAL LYS VAL VAL SEQRES 13 A 285 ILE LYS SER ASN PHE LYS PRO SER LEU LEU ALA GLN LYS SEQRES 14 A 285 ILE GLU VAL ARG ILE PRO THR PRO LEU ASN THR SER GLY SEQRES 15 A 285 VAL GLN VAL ILE CYS MET LYS GLY LYS ALA LYS TYR LYS SEQRES 16 A 285 ALA SER GLU ASN ALA ILE VAL TRP LYS ILE LYS ARG MET SEQRES 17 A 285 ALA GLY MET LYS GLU SER GLN ILE SER ALA GLU ILE GLU SEQRES 18 A 285 LEU LEU PRO THR ASN ASP LYS LYS LYS TRP ALA ARG PRO SEQRES 19 A 285 PRO ILE SER MET ASN PHE GLU VAL PRO PHE ALA PRO SER SEQRES 20 A 285 GLY LEU LYS VAL ARG TYR LEU LYS VAL PHE GLU PRO LYS SEQRES 21 A 285 LEU ASN TYR SER ASP HIS ASP VAL ILE LYS TRP VAL ARG SEQRES 22 A 285 TYR ILE GLY ARG SER GLY ILE TYR GLU THR ARG CYS SEQRES 1 P 18 SER HIS LEU GLY THR TYR GLY VAL PHE THR ASN ALA ALA SEQRES 2 P 18 PHE ASP PRO SER PRO FORMUL 3 HOH *33(H2 O) HELIX 1 1 SER A 414 VAL A 418 5 5 SHEET 1 AA 9 ASP A 245 PHE A 248 0 SHEET 2 AA 9 GLY A 270 THR A 279 -1 O ARG A 276 N THR A 247 SHEET 3 AA 9 VAL A 191 TYR A 205 -1 O VAL A 196 N THR A 279 SHEET 4 AA 9 GLU A 172 MET A 185 -1 O GLU A 172 N TYR A 205 SHEET 5 AA 9 ILE A 419 THR A 433 1 O ILE A 419 N LEU A 173 SHEET 6 AA 9 ILE A 386 VAL A 392 -1 O ILE A 386 N THR A 433 SHEET 7 AA 9 LEU A 316 PRO A 325 -1 O GLN A 318 N GLU A 391 SHEET 8 AA 9 ALA A 350 ALA A 359 -1 O ILE A 351 N ILE A 324 SHEET 9 AA 9 LYS A 341 LYS A 345 -1 O LYS A 341 N LYS A 354 SHEET 1 AB 6 ASP A 245 PHE A 248 0 SHEET 2 AB 6 GLY A 270 THR A 279 -1 O ARG A 276 N THR A 247 SHEET 3 AB 6 VAL A 191 TYR A 205 -1 O VAL A 196 N THR A 279 SHEET 4 AB 6 GLU A 172 MET A 185 -1 O GLU A 172 N TYR A 205 SHEET 5 AB 6 ILE A 419 THR A 433 1 O ILE A 419 N LEU A 173 SHEET 6 AB 6 GLY P 7 VAL P 8 -1 O GLY P 7 N VAL A 422 SHEET 1 AC 4 VAL A 252 ARG A 253 0 SHEET 2 AC 4 ILE A 263 PHE A 265 -1 O SER A 264 N ARG A 253 SHEET 3 AC 4 GLU A 211 MET A 216 -1 O CYS A 212 N PHE A 265 SHEET 4 AC 4 VAL A 401 PHE A 407 -1 N ARG A 402 O GLY A 215 SHEET 1 AD 4 PHE A 287 VAL A 296 0 SHEET 2 AD 4 LYS A 300 SER A 309 -1 O LYS A 300 N VAL A 296 SHEET 3 AD 4 GLU A 363 LEU A 372 -1 O SER A 364 N ILE A 307 SHEET 4 AD 4 THR A 330 ILE A 336 -1 N SER A 331 O GLU A 371 CRYST1 125.720 125.720 75.270 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007954 0.004592 0.000000 0.00000 SCALE2 0.000000 0.009185 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013285 0.00000