data_1HOQ # _entry.id 1HOQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1HOQ pdb_00001hoq 10.2210/pdb1hoq/pdb RCSB RCSB012485 ? ? WWPDB D_1000012485 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1HO6 '1HO6 contains the same hairpin but with ANA/RNA stem' unspecified PDB 1FC8 ;1FC8 contains the same hairpin but with 2'F-ANA/RNA stem ; unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1HOQ _pdbx_database_status.recvd_initial_deposition_date 2000-12-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Denisov, A.Y.' 1 'Gehring, K.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Solution structure of an arabinonucleic acid (ANA)/RNA duplex in a chimeric hairpin: comparison with 2'-fluoro-ANA/RNA and DNA/RNA hybrids. ; 'Nucleic Acids Res.' 29 4284 4293 2001 NARHAD UK 0305-1048 0389 ? 11691916 10.1093/nar/29.21.4284 1 ;Properties of Arabinonucleic Acids (ANA & 2'F-ANA): Implications for the Design of Antisense Therapeutics that Invoke RNase H Cleavage of RNA ; 'NUCLEOSIDES NUCLEOTIDES NUCLEIC ACIDS' 20 429 440 2001 ? US 1525-7770 ? ? ? 10.1081/NCN-100002317 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Denisov, A.Y.' 1 ? primary 'Noronha, A.M.' 2 ? primary 'Wilds, C.J.' 3 ? primary 'Trempe, J.F.' 4 ? primary 'Pon, R.T.' 5 ? primary 'Gehring, K.' 6 ? primary 'Damha, M.J.' 7 ? 1 'Damha, M.J.' 8 ? 1 'Noronha, A.M.' 9 ? 1 'Wilds, C.J.' 10 ? 1 'Trempe, J.F.' 11 ? 1 'Denisov, A.Y.' 12 ? 1 'Pon, R.T.' 13 ? 1 'Gehring, K.' 14 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA/RNA (5'-R(*GP*GP*AP*C)-D(P*TP*TP*CP*GP*GP*TP*CP*C)-3') ; _entity.formula_weight 3718.377 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polydeoxyribonucleotide/polyribonucleotide hybrid' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code 'GGAC(DT)(DT)(DC)(DG)(DG)(DT)(DC)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GGACTTCGGTCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 DT n 1 6 DT n 1 7 DC n 1 8 DG n 1 9 DG n 1 10 DT n 1 11 DC n 1 12 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Solid phase synthesis, phosphoramidite chemistry' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1HOQ _struct_ref.pdbx_db_accession 1HOQ _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1HOQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 12 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1HOQ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 12 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 DQF-COSY 2 1 1 2D-NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1mM hairpin' D2O 2 '1mM hairpin' H2O/D2O # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.field_strength 500 # _pdbx_nmr_refine.entry_id 1HOQ _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'The structures were refined by NMR-restrained molecular dynamics (14 ps, 300-1000 K) with final energy minimization' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1HOQ _pdbx_nmr_details.text ;This structure was determined using standard 2D homo- and heteronuclear techniques: 2D-NOESY, DQF-COSY, TOCSY, H,C-HMQC, H,P-HetCOSY ; # _pdbx_nmr_ensemble.entry_id 1HOQ _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1HOQ _pdbx_nmr_representative.conformer_id ? _pdbx_nmr_representative.selection_criteria 'the hairpin stem structure closest to the average' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal X-PLOR 3.843 refinement Brunger 1 X-PLOR ? 'data analysis' Brunger 2 # _exptl.entry_id 1HOQ _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1HOQ _struct.title 'CHIMERIC RNA/DNA HAIRPIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1HOQ _struct_keywords.pdbx_keywords 'DNA, RNA' _struct_keywords.text 'Hairpin, DNA, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A DC 12 N3 ? ? A G 1 A DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A DC 12 O2 ? ? A G 1 A DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A DC 12 N4 ? ? A G 1 A DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A DC 11 N3 ? ? A G 2 A DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A DC 11 O2 ? ? A G 2 A DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A DC 11 N4 ? ? A G 2 A DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A DT 10 N3 ? ? A A 3 A DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A DT 10 O4 ? ? A A 3 A DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A DG 9 N1 ? ? A C 4 A DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A DG 9 O6 ? ? A C 4 A DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A DG 9 N2 ? ? A C 4 A DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 A DG 9 N1 ? ? A DT 5 A DG 9 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog13 hydrog ? ? A DT 6 N3 ? ? ? 1_555 A DG 8 N7 ? ? A DT 6 A DG 8 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1HOQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1HOQ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 C 4 4 4 C C A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DT 10 10 10 DT T A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DC 12 12 12 DC C A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-11-07 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 "HO2'" A G 1 ? ? "O5'" A G 2 ? ? 1.53 2 3 "HO2'" A G 1 ? ? "O5'" A G 2 ? ? 1.54 3 4 "HO2'" A G 1 ? ? "O5'" A G 2 ? ? 1.52 4 4 "H1'" A DT 5 ? ? O6 A DG 8 ? ? 1.59 5 5 "HO2'" A G 1 ? ? "O5'" A G 2 ? ? 1.55 6 6 "HO2'" A G 1 ? ? "O5'" A G 2 ? ? 1.50 7 6 N1 A A 3 ? ? H3 A DT 10 ? ? 1.59 8 7 "HO2'" A G 1 ? ? "O5'" A G 2 ? ? 1.51 9 8 "HO2'" A G 1 ? ? "O5'" A G 2 ? ? 1.49 10 9 "HO2'" A G 1 ? ? "O5'" A G 2 ? ? 1.51 11 9 O2 A C 4 ? ? H21 A DG 9 ? ? 1.56 12 10 O2 A C 4 ? ? H21 A DG 9 ? ? 1.58 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.98 113.10 4.88 0.50 N 2 1 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.82 106.40 -2.58 0.40 N 3 1 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.82 113.10 4.72 0.50 N 4 1 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.69 106.40 -2.71 0.40 N 5 1 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.51 113.80 3.71 0.50 N 6 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.56 108.30 3.26 0.30 N 7 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 110.98 108.30 2.68 0.30 N 8 1 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 111.04 108.30 2.74 0.30 N 9 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.44 108.30 2.14 0.30 N 10 1 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.69 113.10 4.59 0.50 N 11 1 C8 A DG 8 ? ? N9 A DG 8 ? ? C4 A DG 8 ? ? 103.90 106.40 -2.50 0.40 N 12 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.88 108.30 3.58 0.30 N 13 1 N7 A DG 9 ? ? C8 A DG 9 ? ? N9 A DG 9 ? ? 117.79 113.10 4.69 0.50 N 14 1 C8 A DG 9 ? ? N9 A DG 9 ? ? C4 A DG 9 ? ? 103.95 106.40 -2.45 0.40 N 15 1 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.96 108.30 2.66 0.30 N 16 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.69 108.30 3.39 0.30 N 17 1 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 111.15 108.30 2.85 0.30 N 18 2 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.51 113.10 4.41 0.50 N 19 2 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 118.09 113.10 4.99 0.50 N 20 2 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.65 113.80 3.85 0.50 N 21 2 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.08 108.30 2.78 0.30 N 22 2 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.32 108.30 3.02 0.30 N 23 2 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 111.13 108.30 2.83 0.30 N 24 2 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.72 108.30 3.42 0.30 N 25 2 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.64 113.10 4.54 0.50 N 26 2 C8 A DG 8 ? ? N9 A DG 8 ? ? C4 A DG 8 ? ? 103.76 106.40 -2.64 0.40 N 27 2 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.82 108.30 3.52 0.30 N 28 2 N7 A DG 9 ? ? C8 A DG 9 ? ? N9 A DG 9 ? ? 117.81 113.10 4.71 0.50 N 29 2 C8 A DG 9 ? ? N9 A DG 9 ? ? C4 A DG 9 ? ? 103.96 106.40 -2.44 0.40 N 30 2 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.13 108.30 2.83 0.30 N 31 2 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 112.17 108.30 3.87 0.30 N 32 2 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 111.22 108.30 2.92 0.30 N 33 3 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.60 113.10 4.50 0.50 N 34 3 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 118.14 113.10 5.04 0.50 N 35 3 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.84 106.40 -2.56 0.40 N 36 3 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.59 113.80 3.79 0.50 N 37 3 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.28 108.30 2.98 0.30 N 38 3 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 111.44 108.30 3.14 0.30 N 39 3 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.46 108.30 3.16 0.30 N 40 3 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.75 113.10 4.65 0.50 N 41 3 C8 A DG 8 ? ? N9 A DG 8 ? ? C4 A DG 8 ? ? 103.64 106.40 -2.76 0.40 N 42 3 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.73 108.30 3.43 0.30 N 43 3 N7 A DG 9 ? ? C8 A DG 9 ? ? N9 A DG 9 ? ? 117.77 113.10 4.67 0.50 N 44 3 C8 A DG 9 ? ? N9 A DG 9 ? ? C4 A DG 9 ? ? 103.82 106.40 -2.58 0.40 N 45 3 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.20 108.30 2.90 0.30 N 46 3 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.71 108.30 3.41 0.30 N 47 3 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 111.07 108.30 2.77 0.30 N 48 4 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.57 113.10 4.47 0.50 N 49 4 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 118.10 113.10 5.00 0.50 N 50 4 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.61 113.80 3.81 0.50 N 51 4 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.27 108.30 2.97 0.30 N 52 4 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.39 108.30 3.09 0.30 N 53 4 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 111.17 108.30 2.87 0.30 N 54 4 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 112.84 108.30 4.54 0.30 N 55 4 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.86 113.10 4.76 0.50 N 56 4 C8 A DG 8 ? ? N9 A DG 8 ? ? C4 A DG 8 ? ? 103.77 106.40 -2.63 0.40 N 57 4 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.98 108.30 3.68 0.30 N 58 4 N7 A DG 9 ? ? C8 A DG 9 ? ? N9 A DG 9 ? ? 117.78 113.10 4.68 0.50 N 59 4 C8 A DG 9 ? ? N9 A DG 9 ? ? C4 A DG 9 ? ? 103.72 106.40 -2.68 0.40 N 60 4 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.24 108.30 2.94 0.30 N 61 4 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 112.08 108.30 3.78 0.30 N 62 4 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 111.28 108.30 2.98 0.30 N 63 5 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.62 113.10 4.52 0.50 N 64 5 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 118.14 113.10 5.04 0.50 N 65 5 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.63 113.80 3.83 0.50 N 66 5 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.43 108.30 3.13 0.30 N 67 5 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.04 108.30 2.74 0.30 N 68 5 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 111.36 108.30 3.06 0.30 N 69 5 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.81 108.30 2.51 0.30 N 70 5 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.92 113.10 4.82 0.50 N 71 5 C8 A DG 8 ? ? N9 A DG 8 ? ? C4 A DG 8 ? ? 103.59 106.40 -2.81 0.40 N 72 5 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.53 108.30 3.23 0.30 N 73 5 N7 A DG 9 ? ? C8 A DG 9 ? ? N9 A DG 9 ? ? 117.64 113.10 4.54 0.50 N 74 5 C8 A DG 9 ? ? N9 A DG 9 ? ? C4 A DG 9 ? ? 103.93 106.40 -2.47 0.40 N 75 5 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.23 108.30 2.93 0.30 N 76 5 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.83 108.30 3.53 0.30 N 77 5 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 111.36 108.30 3.06 0.30 N 78 6 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.58 113.10 4.48 0.50 N 79 6 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 118.18 113.10 5.08 0.50 N 80 6 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.98 106.40 -2.42 0.40 N 81 6 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.59 113.80 3.79 0.50 N 82 6 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.41 108.30 3.11 0.30 N 83 6 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 110.97 108.30 2.67 0.30 N 84 6 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.88 108.30 2.58 0.30 N 85 6 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.78 108.30 2.48 0.30 N 86 6 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.80 113.10 4.70 0.50 N 87 6 C8 A DG 8 ? ? N9 A DG 8 ? ? C4 A DG 8 ? ? 103.70 106.40 -2.70 0.40 N 88 6 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 112.55 108.30 4.25 0.30 N 89 6 N7 A DG 9 ? ? C8 A DG 9 ? ? N9 A DG 9 ? ? 117.69 113.10 4.59 0.50 N 90 6 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.16 108.30 2.86 0.30 N 91 6 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 112.08 108.30 3.78 0.30 N 92 6 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 111.27 108.30 2.97 0.30 N 93 7 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.57 113.10 4.47 0.50 N 94 7 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 118.14 113.10 5.04 0.50 N 95 7 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.90 106.40 -2.50 0.40 N 96 7 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.60 113.80 3.80 0.50 N 97 7 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.51 108.30 3.21 0.30 N 98 7 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.28 108.30 2.98 0.30 N 99 7 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.86 108.30 2.56 0.30 N 100 7 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.64 108.30 3.34 0.30 N 101 7 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.78 113.10 4.68 0.50 N 102 7 C8 A DG 8 ? ? N9 A DG 8 ? ? C4 A DG 8 ? ? 103.68 106.40 -2.72 0.40 N 103 7 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.45 108.30 3.15 0.30 N 104 7 N7 A DG 9 ? ? C8 A DG 9 ? ? N9 A DG 9 ? ? 117.69 113.10 4.59 0.50 N 105 7 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.03 108.30 2.73 0.30 N 106 7 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 112.09 108.30 3.79 0.30 N 107 7 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 111.14 108.30 2.84 0.30 N 108 8 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.57 113.10 4.47 0.50 N 109 8 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 118.13 113.10 5.03 0.50 N 110 8 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.96 106.40 -2.44 0.40 N 111 8 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.59 113.80 3.79 0.50 N 112 8 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.34 108.30 3.04 0.30 N 113 8 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.02 108.30 2.72 0.30 N 114 8 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 111.48 108.30 3.18 0.30 N 115 8 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.41 108.30 3.11 0.30 N 116 8 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.82 113.10 4.72 0.50 N 117 8 C8 A DG 8 ? ? N9 A DG 8 ? ? C4 A DG 8 ? ? 103.71 106.40 -2.69 0.40 N 118 8 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 112.14 108.30 3.84 0.30 N 119 8 N7 A DG 9 ? ? C8 A DG 9 ? ? N9 A DG 9 ? ? 117.81 113.10 4.71 0.50 N 120 8 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.21 108.30 2.91 0.30 N 121 8 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.92 108.30 3.62 0.30 N 122 8 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 111.25 108.30 2.95 0.30 N 123 9 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.69 113.10 4.59 0.50 N 124 9 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 118.05 113.10 4.95 0.50 N 125 9 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.99 106.40 -2.41 0.40 N 126 9 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.47 113.80 3.67 0.50 N 127 9 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.17 108.30 2.87 0.30 N 128 9 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.42 108.30 3.12 0.30 N 129 9 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.39 108.30 2.09 0.30 N 130 9 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.44 108.30 2.14 0.30 N 131 9 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.90 113.10 4.80 0.50 N 132 9 C8 A DG 8 ? ? N9 A DG 8 ? ? C4 A DG 8 ? ? 103.63 106.40 -2.77 0.40 N 133 9 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 112.64 108.30 4.34 0.30 N 134 9 N7 A DG 9 ? ? C8 A DG 9 ? ? N9 A DG 9 ? ? 117.75 113.10 4.65 0.50 N 135 9 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.27 108.30 2.97 0.30 N 136 9 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.94 108.30 3.64 0.30 N 137 9 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 111.28 108.30 2.98 0.30 N 138 10 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 118.03 113.10 4.93 0.50 N 139 10 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.75 106.40 -2.65 0.40 N 140 10 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.78 113.10 4.68 0.50 N 141 10 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.69 106.40 -2.71 0.40 N 142 10 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.72 113.80 3.92 0.50 N 143 10 C8 A A 3 ? ? N9 A A 3 ? ? C4 A A 3 ? ? 103.38 105.80 -2.42 0.40 N 144 10 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.91 108.30 3.61 0.30 N 145 10 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 110.88 108.30 2.58 0.30 N 146 10 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.77 108.30 2.47 0.30 N 147 10 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.18 108.30 2.88 0.30 N 148 10 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.93 113.10 4.83 0.50 N 149 10 C8 A DG 8 ? ? N9 A DG 8 ? ? C4 A DG 8 ? ? 103.63 106.40 -2.77 0.40 N 150 10 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 112.00 108.30 3.70 0.30 N 151 10 N7 A DG 9 ? ? C8 A DG 9 ? ? N9 A DG 9 ? ? 117.74 113.10 4.64 0.50 N 152 10 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.28 108.30 2.98 0.30 N 153 10 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.86 108.30 3.56 0.30 N 154 10 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 111.21 108.30 2.91 0.30 N # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1HOQ 'double helix' 1HOQ 'bulge loop' 1HOQ 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A DC 12 1_555 -0.602 -0.431 -0.085 -4.042 1.652 -3.249 1 A_G1:DC12_A A 1 ? A 12 ? 19 1 1 A G 2 1_555 A DC 11 1_555 -0.894 -0.447 -0.347 -9.401 -17.732 5.181 2 A_G2:DC11_A A 2 ? A 11 ? 19 1 1 A A 3 1_555 A DT 10 1_555 -0.274 -0.367 0.038 -6.301 -7.846 1.313 3 A_A3:DT10_A A 3 ? A 10 ? 20 1 1 A C 4 1_555 A DG 9 1_555 0.681 -0.470 -0.152 16.958 -13.137 -1.050 4 A_C4:DG9_A A 4 ? A 9 ? 19 1 1 A DT 6 1_555 A DG 8 1_555 -0.941 3.679 0.016 -18.946 10.208 -63.008 5 A_DT6:DG8_A A 6 ? A 8 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A DC 12 1_555 A G 2 1_555 A DC 11 1_555 0.277 -1.627 3.348 5.194 4.853 35.416 -3.310 0.286 3.113 7.879 -8.433 36.100 1 AA_G1G2:DC11DC12_AA A 1 ? A 12 ? A 2 ? A 11 ? 1 A G 2 1_555 A DC 11 1_555 A A 3 1_555 A DT 10 1_555 0.038 -1.034 2.949 -2.520 6.652 30.869 -2.962 -0.474 2.662 12.294 4.657 31.658 2 AA_G2A3:DT10DC11_AA A 2 ? A 11 ? A 3 ? A 10 ? 1 A A 3 1_555 A DT 10 1_555 A C 4 1_555 A DG 9 1_555 -0.200 -0.518 2.635 3.396 2.346 35.937 -1.098 0.703 2.569 3.786 -5.482 36.166 3 AA_A3C4:DG9DT10_AA A 3 ? A 10 ? A 4 ? A 9 ? 1 A C 4 1_555 A DG 9 1_555 A DT 6 1_555 A DG 8 1_555 0.584 0.604 4.834 47.516 19.891 75.556 -0.247 1.201 4.594 14.760 -35.258 89.226 4 AA_C4DT6:DG8DG9_AA A 4 ? A 9 ? A 6 ? A 8 ? #