HEADER TRANSFERASE 15-DEC-00 1HQE TITLE HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POL POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: P66 SUBUNIT; COMPND 5 SYNONYM: REVERSE TRANSCRIPTASE; COMPND 6 EC: 2.7.7.49; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: POL POLYPROTEIN; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: P51 SUBUNIT; COMPND 13 SYNONYM: REVERSE TRANSCRIPTASE; COMPND 14 EC: 2.7.7.49; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BH10 ISOLATE; SOURCE 7 OTHER_DETAILS: HIV-1 CLONE 12; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 10 ORGANISM_TAXID: 11676; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BH10 ISOLATE; SOURCE 14 OTHER_DETAILS: HIV-1 CLONE 12 KEYWDS NUCLEOTIDYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.DING,Y.HSIOU,E.ARNOLD REVDAT 5 09-AUG-23 1HQE 1 REMARK REVDAT 4 27-OCT-21 1HQE 1 SEQADV REVDAT 3 24-FEB-09 1HQE 1 VERSN REVDAT 2 01-APR-03 1HQE 1 JRNL REVDAT 1 30-MAY-01 1HQE 0 JRNL AUTH Y.HSIOU,J.DING,K.DAS,A.D.CLARK JR.,P.L.BOYER,P.LEWI, JRNL AUTH 2 P.A.JANSSEN,J.P.KLEIM,M.ROSNER,S.H.HUGHES,E.ARNOLD JRNL TITL THE LYS103ASN MUTATION OF HIV-1 RT: A NOVEL MECHANISM OF JRNL TITL 2 DRUG RESISTANCE. JRNL REF J.MOL.BIOL. V. 309 437 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11371163 JRNL DOI 10.1006/JMBI.2001.4648 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.HSIOU,J.DING,K.DAS,A.D.CLARK JR.,S.H.HUGHES,E.ARNOLD REMARK 1 TITL STRUCTURE OF UNLIGANDED HIV-1 REVERSE TRANSCRIPTASE AT 2.7 A REMARK 1 TITL 2 RESOLUTION: IMPLICATIONS OF CONFORMATIONAL CHANGES FOR REMARK 1 TITL 3 POLYMERIZATION AND INHIBITION MECHANISMS REMARK 1 REF STRUCTURE V. 4 853 1996 REMARK 1 REFN ISSN 0969-2126 REMARK 1 DOI 10.1016/S0969-2126(96)00091-3 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.843 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.4 REMARK 3 NUMBER OF REFLECTIONS : 36086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.331 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1440 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7650 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.500 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HQE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-00. REMARK 100 THE DEPOSITION ID IS D_1000012516. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-97 REMARK 200 TEMPERATURE (KELVIN) : 108 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37652 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: PDB ENTRY 1DLO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS.PROPANE, AMMONIUN SULFATE, REMARK 280 GLYCEROL, PEG 8000, PH 6.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 118.05000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 118.05000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 555 REMARK 465 ILE A 556 REMARK 465 ARG A 557 REMARK 465 LYS A 558 REMARK 465 ILE A 559 REMARK 465 LEU A 560 REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 465 GLU B 224 REMARK 465 PRO B 225 REMARK 465 PRO B 226 REMARK 465 PHE B 227 REMARK 465 LEU B 228 REMARK 465 TRP B 229 REMARK 465 MET B 230 REMARK 465 GLN B 428 REMARK 465 LEU B 429 REMARK 465 GLU B 430 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 ASP A 67 CG OD1 OD2 REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 SER A 134 OG REMARK 470 ILE A 135 CG1 CG2 CD1 REMARK 470 ASN A 136 CG OD1 ND2 REMARK 470 THR A 139 OG1 CG2 REMARK 470 GLU A 169 CG CD OE1 OE2 REMARK 470 ASP A 177 CG OD1 OD2 REMARK 470 GLN A 207 CG CD OE1 NE2 REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 GLN A 242 CG CD OE1 NE2 REMARK 470 GLN A 278 CG CD OE1 NE2 REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 GLU A 305 CG CD OE1 OE2 REMARK 470 LYS A 311 CG CD CE NZ REMARK 470 LYS A 331 CG CD CE NZ REMARK 470 GLN A 332 CG CD OE1 NE2 REMARK 470 GLN A 334 CG CD OE1 NE2 REMARK 470 GLN A 336 CG CD OE1 NE2 REMARK 470 ARG A 356 CG CD NE CZ NH1 NH2 REMARK 470 MET A 357 CG SD CE REMARK 470 ARG A 358 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 404 CG CD OE1 OE2 REMARK 470 GLU A 413 CG CD OE1 OE2 REMARK 470 LYS A 424 CG CD CE NZ REMARK 470 VAL A 435 CG1 CG2 REMARK 470 ASN A 447 CG OD1 ND2 REMARK 470 ARG A 448 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 449 CG CD OE1 OE2 REMARK 470 LYS A 451 CG CD CE NZ REMARK 470 LEU A 486 CG CD1 CD2 REMARK 470 LYS A 512 CG CD CE NZ REMARK 470 GLU A 514 CG CD OE1 OE2 REMARK 470 LYS A 527 CG CD CE NZ REMARK 470 ILE A 542 CG1 CG2 CD1 REMARK 470 ASP A 549 CG OD1 OD2 REMARK 470 LYS A 550 CG CD CE NZ REMARK 470 LEU A 551 CG CD1 CD2 REMARK 470 VAL A 552 CG1 CG2 REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 ASP B 67 CG OD1 OD2 REMARK 470 THR B 69 OG1 CG2 REMARK 470 TRP B 88 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 88 CZ3 CH2 REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 VAL B 90 CG1 CG2 REMARK 470 GLN B 91 CG CD OE1 NE2 REMARK 470 LEU B 92 CG CD1 CD2 REMARK 470 ILE B 94 CG1 CG2 CD1 REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 LEU B 193 CG CD1 CD2 REMARK 470 GLN B 197 CG CD OE1 NE2 REMARK 470 ASP B 218 CG OD1 OD2 REMARK 470 LYS B 238 CG CD CE NZ REMARK 470 TRP B 252 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 252 CZ3 CH2 REMARK 470 LYS B 281 CG CD CE NZ REMARK 470 LEU B 295 CG CD1 CD2 REMARK 470 GLU B 297 CG CD OE1 OE2 REMARK 470 ASN B 306 CG OD1 ND2 REMARK 470 GLU B 308 CG CD OE1 OE2 REMARK 470 ARG B 356 CG CD NE CZ NH1 NH2 REMARK 470 MET B 357 CG SD CE REMARK 470 ARG B 358 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 361 CG ND1 CD2 CE1 NE2 REMARK 470 THR B 362 OG1 CG2 REMARK 470 LEU B 422 CG CD1 CD2 REMARK 470 VAL B 423 CG1 CG2 REMARK 470 LYS B 424 CG CD CE NZ REMARK 470 LEU B 425 CG CD1 CD2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 TRP B 88 REMARK 475 GLU B 89 REMARK 475 VAL B 90 REMARK 475 GLN B 91 REMARK 475 LEU B 92 REMARK 475 GLY B 93 REMARK 475 ILE B 94 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG LYS A 465 O HOH A 620 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB ASP A 250 O HOH B 498 4647 1.80 REMARK 500 OG SER A 251 O GLY B 15 4647 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 345 C - N - CA ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 52 11.87 -69.57 REMARK 500 LYS A 66 -31.61 -164.84 REMARK 500 TRP A 88 55.96 -97.96 REMARK 500 ALA A 98 3.23 -69.86 REMARK 500 LYS A 104 -49.25 -23.12 REMARK 500 PHE A 124 -36.47 -137.12 REMARK 500 ARG A 125 -32.16 -35.10 REMARK 500 ASN A 137 23.25 -66.47 REMARK 500 TYR A 183 115.72 -167.02 REMARK 500 MET A 184 -133.56 54.79 REMARK 500 ILE A 195 -29.51 -39.51 REMARK 500 GLN A 222 22.25 45.31 REMARK 500 LYS A 223 33.28 79.83 REMARK 500 GLN A 269 20.42 -70.64 REMARK 500 ILE A 270 -40.70 -141.76 REMARK 500 ARG A 277 -68.42 -27.84 REMARK 500 ARG A 284 -35.53 -39.65 REMARK 500 LEU A 289 -30.57 -39.97 REMARK 500 GLU A 312 94.69 -168.88 REMARK 500 PRO A 345 -73.48 -15.71 REMARK 500 ARG A 358 49.95 -86.03 REMARK 500 PRO A 412 -163.52 -56.73 REMARK 500 GLU A 413 107.74 -55.44 REMARK 500 LYS A 451 -1.07 74.45 REMARK 500 VAL A 458 93.72 -168.77 REMARK 500 LYS A 465 163.84 167.36 REMARK 500 VAL A 466 144.65 -175.83 REMARK 500 THR A 470 -92.84 -74.40 REMARK 500 ALA A 538 -78.62 -82.97 REMARK 500 HIS A 539 31.73 -87.83 REMARK 500 ASN A 545 8.09 -69.19 REMARK 500 ASP A 549 44.03 -77.93 REMARK 500 LEU A 551 157.44 -46.69 REMARK 500 ILE B 2 -120.89 -92.20 REMARK 500 PRO B 4 64.25 -53.97 REMARK 500 PRO B 14 132.00 -38.20 REMARK 500 GLU B 53 -5.12 -58.54 REMARK 500 LYS B 65 -100.55 -95.15 REMARK 500 LYS B 66 -129.26 -37.28 REMARK 500 SER B 68 -151.59 -103.26 REMARK 500 TRP B 88 -64.68 5.61 REMARK 500 VAL B 90 -61.76 116.10 REMARK 500 PRO B 95 -125.64 -130.99 REMARK 500 ALA B 98 1.51 -54.01 REMARK 500 PHE B 116 -5.05 -56.22 REMARK 500 PRO B 140 -39.54 -38.81 REMARK 500 MET B 184 -119.67 50.54 REMARK 500 LEU B 193 143.28 -170.73 REMARK 500 TRP B 212 12.30 -68.17 REMARK 500 PRO B 217 138.57 -24.06 REMARK 500 REMARK 500 THIS ENTRY HAS 71 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 188 0.07 SIDE CHAIN REMARK 500 TYR A 501 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HPZ RELATED DB: PDB REMARK 900 1HPZ IS THE STRUCTURE OF LYS103ASN HIV-1 RT/ALPHA-APA R90385 REMARK 900 COMPLEX. REMARK 900 RELATED ID: 1HQU RELATED DB: PDB REMARK 900 1HQU IS THE STRUCTURE OF LYS103ASN HIV-1 RT/HBY 097 COMPLEX. DBREF 1HQE A 1 560 UNP P03366 POL_HV1B1 168 727 DBREF 1HQE B 1 430 UNP P03366 POL_HV1B1 168 597 SEQADV 1HQE ASN A 103 UNP P03366 LYS 270 ENGINEERED MUTATION SEQADV 1HQE SER A 280 UNP P03366 CYS 447 ENGINEERED MUTATION SEQADV 1HQE ASN B 103 UNP P03366 LYS 270 ENGINEERED MUTATION SEQADV 1HQE SER B 280 UNP P03366 CYS 447 ENGINEERED MUTATION SEQRES 1 A 560 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 A 560 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 A 560 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 A 560 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 A 560 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 A 560 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 A 560 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 A 560 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS ASN LYS SEQRES 9 A 560 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 A 560 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 A 560 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 A 560 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 A 560 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 A 560 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 A 560 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 A 560 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 A 560 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 A 560 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 A 560 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 A 560 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 A 560 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 A 560 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 A 560 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 A 560 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 A 560 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 A 560 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 A 560 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 A 560 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 A 560 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 A 560 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 A 560 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 A 560 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 A 560 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN LEU SEQRES 34 A 560 GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE TYR VAL SEQRES 35 A 560 ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY LYS ALA SEQRES 36 A 560 GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL VAL PRO SEQRES 37 A 560 LEU THR ASN THR THR ASN GLN LYS THR GLU LEU GLN ALA SEQRES 38 A 560 ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU VAL ASN SEQRES 39 A 560 ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE ILE GLN SEQRES 40 A 560 ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL ASN GLN SEQRES 41 A 560 ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL TYR LEU SEQRES 42 A 560 ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY ASN GLU SEQRES 43 A 560 GLN VAL ASP LYS LEU VAL SER ALA GLY ILE ARG LYS ILE SEQRES 44 A 560 LEU SEQRES 1 B 430 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 B 430 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 B 430 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 B 430 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 B 430 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 B 430 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 B 430 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 B 430 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS ASN LYS SEQRES 9 B 430 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 B 430 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 B 430 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 B 430 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 B 430 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 B 430 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 B 430 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 B 430 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 B 430 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 B 430 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 B 430 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 B 430 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 B 430 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 B 430 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 B 430 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 B 430 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 B 430 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 B 430 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 B 430 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 B 430 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 B 430 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 B 430 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 B 430 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 B 430 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 B 430 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN LEU SEQRES 34 B 430 GLU FORMUL 3 HOH *182(H2 O) HELIX 1 1 THR A 27 GLU A 44 1 18 HELIX 2 2 PHE A 77 THR A 84 1 8 HELIX 3 3 HIS A 96 LEU A 100 5 5 HELIX 4 4 ALA A 114 VAL A 118 5 5 HELIX 5 5 PHE A 124 TYR A 127 5 4 HELIX 6 6 GLY A 155 ASN A 175 1 21 HELIX 7 7 GLU A 194 TRP A 212 1 19 HELIX 8 8 THR A 253 GLN A 269 1 17 HELIX 9 9 VAL A 276 ARG A 284 1 9 HELIX 10 10 THR A 296 LYS A 311 1 16 HELIX 11 11 GLY A 333 GLY A 335 5 3 HELIX 12 12 ASP A 364 GLY A 384 1 21 HELIX 13 13 GLN A 394 THR A 403 1 10 HELIX 14 14 THR A 473 ASP A 488 1 16 HELIX 15 15 SER A 499 ALA A 508 1 10 HELIX 16 16 SER A 515 LYS A 528 1 14 HELIX 17 17 GLY A 543 VAL A 548 1 6 HELIX 18 18 THR B 27 GLU B 44 1 18 HELIX 19 19 PHE B 77 THR B 84 1 8 HELIX 20 20 GLY B 99 ASN B 103 5 5 HELIX 21 21 GLY B 112 SER B 117 5 6 HELIX 22 22 ASP B 123 ALA B 129 5 7 HELIX 23 23 SER B 134 GLU B 138 5 5 HELIX 24 24 LYS B 154 PHE B 160 1 7 HELIX 25 25 PHE B 160 GLU B 169 1 10 HELIX 26 26 PRO B 170 ASN B 175 1 6 HELIX 27 27 GLY B 196 TRP B 212 1 17 HELIX 28 28 THR B 253 ALA B 267 1 15 HELIX 29 29 SER B 268 ILE B 270 5 3 HELIX 30 30 VAL B 276 LYS B 281 1 6 HELIX 31 31 GLU B 302 ARG B 307 1 6 HELIX 32 32 ASN B 363 GLY B 384 1 22 HELIX 33 33 GLN B 394 THR B 400 1 7 HELIX 34 34 TRP B 401 TRP B 406 5 6 SHEET 1 A 3 ILE A 47 ILE A 50 0 SHEET 2 A 3 ARG A 143 TYR A 146 -1 O ARG A 143 N ILE A 50 SHEET 3 A 3 ALA A 129 THR A 131 -1 O PHE A 130 N TYR A 144 SHEET 1 B 2 VAL A 60 PHE A 61 0 SHEET 2 B 2 LEU A 74 VAL A 75 -1 O LEU A 74 N PHE A 61 SHEET 1 C 3 SER A 105 ASP A 110 0 SHEET 2 C 3 ASP A 186 SER A 191 -1 O LEU A 187 N LEU A 109 SHEET 3 C 3 VAL A 179 TYR A 183 -1 O VAL A 179 N GLY A 190 SHEET 1 D 4 PHE A 227 LEU A 228 0 SHEET 2 D 4 TYR A 232 LEU A 234 -1 N LEU A 234 O PHE A 227 SHEET 3 D 4 LYS A 238 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 4 D 4 HIS A 315 VAL A 317 -1 O GLY A 316 N TRP A 239 SHEET 1 E 5 LYS A 347 TYR A 354 0 SHEET 2 E 5 GLN A 336 GLU A 344 -1 N TRP A 337 O TYR A 354 SHEET 3 E 5 ILE A 326 GLN A 332 -1 O ILE A 326 N TYR A 342 SHEET 4 E 5 LYS A 388 LEU A 391 1 O LYS A 388 N ALA A 327 SHEET 5 E 5 TRP A 414 PHE A 416 1 O GLU A 415 N LEU A 391 SHEET 1 F 2 HIS A 361 THR A 362 0 SHEET 2 F 2 LYS A 512 SER A 513 -1 N LYS A 512 O THR A 362 SHEET 1 G 3 GLU A 438 TYR A 441 0 SHEET 2 G 3 GLU A 492 THR A 497 1 O GLU A 492 N GLU A 438 SHEET 3 G 3 LYS A 530 TRP A 535 1 O LYS A 530 N VAL A 493 SHEET 1 H 3 GLY A 444 ALA A 446 0 SHEET 2 H 3 GLY A 453 ALA A 455 -1 O LYS A 454 N ALA A 445 SHEET 3 H 3 VAL A 467 LEU A 469 -1 N VAL A 467 O ALA A 455 SHEET 1 I 3 ILE B 47 LYS B 49 0 SHEET 2 I 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48 SHEET 3 I 3 PHE B 130 ILE B 132 -1 O PHE B 130 N TYR B 144 SHEET 1 J 2 VAL B 60 ALA B 62 0 SHEET 2 J 2 LYS B 73 VAL B 75 -1 N LEU B 74 O PHE B 61 SHEET 1 K 4 ILE B 178 TYR B 183 0 SHEET 2 K 4 ASP B 186 SER B 191 -1 O ASP B 186 N TYR B 183 SHEET 3 K 4 SER B 105 ASP B 110 -1 N SER B 105 O SER B 191 SHEET 4 K 4 TYR B 232 LEU B 234 -1 N TYR B 232 O VAL B 108 SHEET 1 L 5 LYS B 347 TYR B 354 0 SHEET 2 L 5 TRP B 337 GLU B 344 -1 O TRP B 337 N TYR B 354 SHEET 3 L 5 ILE B 326 GLN B 330 -1 N ILE B 326 O TYR B 342 SHEET 4 L 5 LYS B 388 LEU B 391 1 O LYS B 388 N ALA B 327 SHEET 5 L 5 TRP B 414 PHE B 416 1 O GLU B 415 N LEU B 391 CRYST1 236.100 70.400 93.400 90.00 106.20 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004235 0.000000 0.001231 0.00000 SCALE2 0.000000 0.014205 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011149 0.00000