data_1HRY # _entry.id 1HRY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1HRY pdb_00001hry 10.2210/pdb1hry/pdb WWPDB D_1000173987 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1HRZ _pdbx_database_related.details 'ENSEMBLE OF 35 STRUCTURES' _pdbx_database_related.content_type ensemble # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1HRY _pdbx_database_status.recvd_initial_deposition_date 1995-05-09 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Clore, G.M.' 1 'Werner, M.H.' 2 'Huth, J.R.' 3 'Gronenborn, A.M.' 4 # _citation.id primary _citation.title 'Molecular basis of human 46X,Y sex reversal revealed from the three-dimensional solution structure of the human SRY-DNA complex.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 81 _citation.page_first 704 _citation.page_last 705 _citation.year 1995 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 7774012 _citation.pdbx_database_id_DOI '10.1016/0092-8674(95)90532-4' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Werner, M.H.' 1 ? primary 'Huth, J.R.' 2 ? primary 'Gronenborn, A.M.' 3 ? primary 'Clore, G.M.' 4 ? # _cell.entry_id 1HRY _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HRY _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*CP*AP*CP*AP*AP*AP*C)-3') ; 2404.621 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*TP*TP*TP*GP*TP*GP*C)-3') ; 2448.613 1 ? ? ? ? 3 polymer nat 'HUMAN SRY' 9508.031 1 ? ? ? ? # loop_ _entity_keywords.entity_id _entity_keywords.text 1 'DEOXYRIBONUCLEIC ACID' 2 'DEOXYRIBONUCLEIC ACID' 3 POLYPEPTIDE # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DC)(DA)(DC)(DA)(DA)(DA)(DC)' GCACAAAC B ? 2 polydeoxyribonucleotide no no '(DG)(DT)(DT)(DT)(DG)(DT)(DG)(DC)' GTTTGTGC C ? 3 'polypeptide(L)' no no VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DA n 1 4 DC n 1 5 DA n 1 6 DA n 1 7 DA n 1 8 DC n 2 1 DG n 2 2 DT n 2 3 DT n 2 4 DT n 2 5 DG n 2 6 DT n 2 7 DG n 2 8 DC n 3 1 VAL n 3 2 GLN n 3 3 ASP n 3 4 ARG n 3 5 VAL n 3 6 LYS n 3 7 ARG n 3 8 PRO n 3 9 MET n 3 10 ASN n 3 11 ALA n 3 12 PHE n 3 13 ILE n 3 14 VAL n 3 15 TRP n 3 16 SER n 3 17 ARG n 3 18 ASP n 3 19 GLN n 3 20 ARG n 3 21 ARG n 3 22 LYS n 3 23 MET n 3 24 ALA n 3 25 LEU n 3 26 GLU n 3 27 ASN n 3 28 PRO n 3 29 ARG n 3 30 MET n 3 31 ARG n 3 32 ASN n 3 33 SER n 3 34 GLU n 3 35 ILE n 3 36 SER n 3 37 LYS n 3 38 GLN n 3 39 LEU n 3 40 GLY n 3 41 TYR n 3 42 GLN n 3 43 TRP n 3 44 LYS n 3 45 MET n 3 46 LEU n 3 47 THR n 3 48 GLU n 3 49 ALA n 3 50 GLU n 3 51 LYS n 3 52 TRP n 3 53 PRO n 3 54 PHE n 3 55 PHE n 3 56 GLN n 3 57 GLU n 3 58 ALA n 3 59 GLN n 3 60 LYS n 3 61 LEU n 3 62 GLN n 3 63 ALA n 3 64 MET n 3 65 HIS n 3 66 ARG n 3 67 GLU n 3 68 LYS n 3 69 TYR n 3 70 PRO n 3 71 ASN n 3 72 TYR n 3 73 LYS n 3 74 TYR n 3 75 ARG n 3 76 PRO n # _entity_src_nat.entity_id 3 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name human _entity_src_nat.pdbx_organism_scientific 'Homo sapiens' _entity_src_nat.pdbx_ncbi_taxonomy_id 9606 _entity_src_nat.genus Homo _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'chemically synthesized' 2 1 sample ? ? ? ? ? 'chemically synthesized' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP SRY_HUMAN Q05066 3 56 ? ? 2 PDB 1HRY 1HRY 1 ? ? ? 3 PDB 1HRY 1HRY 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1HRY A 1 ? 76 ? Q05066 56 ? 131 ? 1 76 2 2 1HRY B 1 ? 8 ? 1HRY 1 ? 8 ? 1 8 3 3 1HRY C 1 ? 8 ? 1HRY 1 ? 8 ? 1 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _pdbx_nmr_refine.entry_id 1HRY _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;NUMBER OF ATOMS USED IN REFINEMENT. NUMBER OF PROTEIN ATOMS 644 NUMBER OF NUCLEIC ACID ATOMS 322 NUMBER OF HETEROGEN ATOMS 0 NUMBER OF SOLVENT ATOMS 0 THE STRUCTURES WERE CALCULATED USING THE SIMULATED ANNEALING PROTOCOL OF NILGES ET AL. (1988) FEBS LETT. 229, 129 - 136 USING THE PROGRAM X-PLOR 3.1 (BRUNGER) MODIFIED TO INCORPORATE COUPLING CONSTANT (GARRETT ET AL. (1984) J. MAGN. RESON. SERIES B 104, 99 - 103) AND CARBON CHEMICAL SHIFT RESTRAINTS (KUSZEWSKI ET AL. (1995) MAGN. RESON. SERIES B 106, 92 - 96). THE 3D STRUCTURE OF THE HUMAN SRY-DNA COMPLEX SOLVED BY MULTI-DIMENSIONAL HETERONUCLEAR-EDITED AND -FILTERED NMR IS BASED ON 1805 EXPERIMENTAL RESTRAINTS: (A) INTRA-PROTEIN: 290 SEQUENTIAL (|I-J|=1), 221 MEDIUM RANGE (1 < |I-J| >=5) AND 107 LONG RANGE (|I-J| >5) INTERRESIDUES. 238 INTRARESIDUE APPROXIMATE INTERPROTON DISTANCE RESTRAINTS; 70 DISTANCE RESTRAINTS FOR 35 HYDROGEN BONDS; 153 TORSION ANGLE (71 PHI, 10 PSI, 56 CHI1 AND 16 CHI2) RESTRAINTS; 56 THREE-BOND HN-HA COUPLING CONSTANT RESTRAINTS; 145 (73 CALPHA AND 72 CBETA) 13C SHIFT RESTRAINTS. (B) INTRA-DNA: 206 INTRARESIDUE, 96 SEQUENTIAL INTRASTRAND, 36 INTERSTRAND INTERPROTON DISTANCE RESTRAINTS; 40 H-BOND RESTRAINTS; 72 TORSION ANGLE RESTRAINTS (FOR ALPHA, BETA, GAMMA, EPSILON AND ZETA BACKBONE TORSION ANGLES. (C) INTERMOLECULAR: 75 INTERPROTON DISTANCE RESTRAINTS THE STRUCTURE IN THIS ENTRY IS THE RESTRAINED REGULARIZED MEAN STRUCTURE. THE LAST COLUMN REPRESENTS THE RMS OF THE 35 INDIVIDUAL SIMULATED ANNEALING STRUCTURES ABOUT THE MEAN COORDINATE POSITIONS. THE 35 INDIVIDUAL STRUCTURES CAN BE FOUND IN PDB ENTRY 1HRZ. THE LAST COLUMN IN THE INDIVIDUAL SA STRUCTURES HAS NO MEANING. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1HRY _pdbx_nmr_details.text ;THE 3D STRUCTURE OF THE HUMAN SRY-DNA COMPLEX SOLVED BY MULTI-DIMENSIONAL HETERONUCLEAR-EDITED AND -FILTERED NMR IS BASED ON 1805 EXPERIMENTAL RESTRAINTS: (A) INTRA-PROTEIN: 290 SEQUENTIAL (|I-J|=1), 221 MEDIUM RANGE (1 < |I-J| >=5) AND 107 LONG RANGE (|I-J| >5) INTERRESIDUES. 238 INTRARESIDUE APPROXIMATE INTERPROTON DISTANCE RESTRAINTS; 70 DISTANCE RESTRAINTS FOR 35 HYDROGEN BONDS; 153 TORSION ANGLE (71 PHI, 10 PSI, 56 CHI1 AND 16 CHI2) RESTRAINTS; 56 THREE-BOND HN-HA COUPLING CONSTANT RESTRAINTS; 145 (73 CALPHA AND 72 CBETA) 13C SHIFT RESTRAINTS. (B) INTRA-DNA: 206 INTRARESIDUE, 96 SEQUENTIAL INTRASTRAND, 36 INTERSTRAND INTERPROTON DISTANCE RESTRAINTS; 40 H-BOND RESTRAINTS; 72 TORSION ANGLE RESTRAINTS (FOR ALPHA, BETA, GAMMA, EPSILON AND ZETA BACKBONE TORSION ANGLES. (C) INTERMOLECULAR: 75 INTERPROTON DISTANCE RESTRAINTS ; # _pdbx_nmr_ensemble.entry_id 1HRY _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_software.name X-PLOR _pdbx_nmr_software.version ? _pdbx_nmr_software.classification refinement _pdbx_nmr_software.authors BRUNGER _pdbx_nmr_software.ordinal 1 # _exptl.entry_id 1HRY _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1HRY _struct.title 'THE 3D STRUCTURE OF THE HUMAN SRY-DNA COMPLEX SOLVED BY MULTID-DIMENSIONAL HETERONUCLEAR-EDITED AND-FILTERED NMR' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1HRY _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text 'DNA, SRY, DNA-BINDING PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA C 11 ? GLU C 26 ? ALA A 11 GLU A 26 1 ? 16 HELX_P HELX_P2 2 GLU C 34 ? MET C 45 ? GLU A 34 MET A 45 1 ? 12 HELX_P HELX_P3 3 GLU C 48 ? LYS C 68 ? GLU A 48 LYS A 68 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 8 N3 ? ? B DG 1 C DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 8 O2 ? ? B DG 1 C DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 8 N4 ? ? B DG 1 C DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 7 N1 ? ? B DC 2 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 7 O6 ? ? B DC 2 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 7 N2 ? ? B DC 2 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 6 N3 ? ? B DA 3 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 6 O4 ? ? B DA 3 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 5 N1 ? ? B DC 4 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 5 O6 ? ? B DC 4 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 5 N2 ? ? B DC 4 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 4 N3 ? ? B DA 5 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 4 O4 ? ? B DA 5 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 3 N3 ? ? B DA 6 C DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 3 O4 ? ? B DA 6 C DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 2 N3 ? ? B DA 7 C DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 2 O4 ? ? B DA 7 C DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 1 N1 ? ? B DC 8 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 1 O6 ? ? B DC 8 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 1 N2 ? ? B DC 8 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1HRY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1HRY _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G B . n A 1 2 DC 2 2 2 DC C B . n A 1 3 DA 3 3 3 DA A B . n A 1 4 DC 4 4 4 DC C B . n A 1 5 DA 5 5 5 DA A B . n A 1 6 DA 6 6 6 DA A B . n A 1 7 DA 7 7 7 DA A B . n A 1 8 DC 8 8 8 DC C B . n B 2 1 DG 1 1 1 DG G C . n B 2 2 DT 2 2 2 DT T C . n B 2 3 DT 3 3 3 DT T C . n B 2 4 DT 4 4 4 DT T C . n B 2 5 DG 5 5 5 DG G C . n B 2 6 DT 6 6 6 DT T C . n B 2 7 DG 7 7 7 DG G C . n B 2 8 DC 8 8 8 DC C C . n C 3 1 VAL 1 1 ? ? ? A . n C 3 2 GLN 2 2 ? ? ? A . n C 3 3 ASP 3 3 3 ASP ASP A . n C 3 4 ARG 4 4 4 ARG ARG A . n C 3 5 VAL 5 5 5 VAL VAL A . n C 3 6 LYS 6 6 6 LYS LYS A . n C 3 7 ARG 7 7 7 ARG ARG A . n C 3 8 PRO 8 8 8 PRO PRO A . n C 3 9 MET 9 9 9 MET MET A . n C 3 10 ASN 10 10 10 ASN ASN A . n C 3 11 ALA 11 11 11 ALA ALA A . n C 3 12 PHE 12 12 12 PHE PHE A . n C 3 13 ILE 13 13 13 ILE ILE A . n C 3 14 VAL 14 14 14 VAL VAL A . n C 3 15 TRP 15 15 15 TRP TRP A . n C 3 16 SER 16 16 16 SER SER A . n C 3 17 ARG 17 17 17 ARG ARG A . n C 3 18 ASP 18 18 18 ASP ASP A . n C 3 19 GLN 19 19 19 GLN GLN A . n C 3 20 ARG 20 20 20 ARG ARG A . n C 3 21 ARG 21 21 21 ARG ARG A . n C 3 22 LYS 22 22 22 LYS LYS A . n C 3 23 MET 23 23 23 MET MET A . n C 3 24 ALA 24 24 24 ALA ALA A . n C 3 25 LEU 25 25 25 LEU LEU A . n C 3 26 GLU 26 26 26 GLU GLU A . n C 3 27 ASN 27 27 27 ASN ASN A . n C 3 28 PRO 28 28 28 PRO PRO A . n C 3 29 ARG 29 29 29 ARG ARG A . n C 3 30 MET 30 30 30 MET MET A . n C 3 31 ARG 31 31 31 ARG ARG A . n C 3 32 ASN 32 32 32 ASN ASN A . n C 3 33 SER 33 33 33 SER SER A . n C 3 34 GLU 34 34 34 GLU GLU A . n C 3 35 ILE 35 35 35 ILE ILE A . n C 3 36 SER 36 36 36 SER SER A . n C 3 37 LYS 37 37 37 LYS LYS A . n C 3 38 GLN 38 38 38 GLN GLN A . n C 3 39 LEU 39 39 39 LEU LEU A . n C 3 40 GLY 40 40 40 GLY GLY A . n C 3 41 TYR 41 41 41 TYR TYR A . n C 3 42 GLN 42 42 42 GLN GLN A . n C 3 43 TRP 43 43 43 TRP TRP A . n C 3 44 LYS 44 44 44 LYS LYS A . n C 3 45 MET 45 45 45 MET MET A . n C 3 46 LEU 46 46 46 LEU LEU A . n C 3 47 THR 47 47 47 THR THR A . n C 3 48 GLU 48 48 48 GLU GLU A . n C 3 49 ALA 49 49 49 ALA ALA A . n C 3 50 GLU 50 50 50 GLU GLU A . n C 3 51 LYS 51 51 51 LYS LYS A . n C 3 52 TRP 52 52 52 TRP TRP A . n C 3 53 PRO 53 53 53 PRO PRO A . n C 3 54 PHE 54 54 54 PHE PHE A . n C 3 55 PHE 55 55 55 PHE PHE A . n C 3 56 GLN 56 56 56 GLN GLN A . n C 3 57 GLU 57 57 57 GLU GLU A . n C 3 58 ALA 58 58 58 ALA ALA A . n C 3 59 GLN 59 59 59 GLN GLN A . n C 3 60 LYS 60 60 60 LYS LYS A . n C 3 61 LEU 61 61 61 LEU LEU A . n C 3 62 GLN 62 62 62 GLN GLN A . n C 3 63 ALA 63 63 63 ALA ALA A . n C 3 64 MET 64 64 64 MET MET A . n C 3 65 HIS 65 65 65 HIS HIS A . n C 3 66 ARG 66 66 66 ARG ARG A . n C 3 67 GLU 67 67 67 GLU GLU A . n C 3 68 LYS 68 68 68 LYS LYS A . n C 3 69 TYR 69 69 69 TYR TYR A . n C 3 70 PRO 70 70 70 PRO PRO A . n C 3 71 ASN 71 71 71 ASN ASN A . n C 3 72 TYR 72 72 72 TYR TYR A . n C 3 73 LYS 73 73 73 LYS LYS A . n C 3 74 TYR 74 74 74 TYR TYR A . n C 3 75 ARG 75 75 75 ARG ARG A . n C 3 76 PRO 76 76 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1995-09-15 2 'Structure model' 1 1 2008-03-03 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.1 ? 1 X-PLOR refinement 3.1 ? 2 X-PLOR phasing 3.1 ? 3 # _pdbx_nmr_constraints.entry_id 1HRY _pdbx_nmr_constraints.NOE_constraints_total 1805 _pdbx_nmr_constraints.NOE_intraresidue_total_count 444 _pdbx_nmr_constraints.NOE_sequential_total_count 386 _pdbx_nmr_constraints.NOE_medium_range_total_count 221 _pdbx_nmr_constraints.NOE_long_range_total_count 107 _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count 71 _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count 10 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count 72 _pdbx_nmr_constraints.protein_other_angle_constraints_total_count 271 _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count 40 _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count 72 _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C5 _pdbx_validate_rmsd_bond.auth_asym_id_1 C _pdbx_validate_rmsd_bond.auth_comp_id_1 DT _pdbx_validate_rmsd_bond.auth_seq_id_1 2 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 C7 _pdbx_validate_rmsd_bond.auth_asym_id_2 C _pdbx_validate_rmsd_bond.auth_comp_id_2 DT _pdbx_validate_rmsd_bond.auth_seq_id_2 2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.533 _pdbx_validate_rmsd_bond.bond_target_value 1.496 _pdbx_validate_rmsd_bond.bond_deviation 0.037 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 111.00 108.30 2.70 0.30 N 2 1 C5 B DG 1 ? ? N7 B DG 1 ? ? C8 B DG 1 ? ? 100.16 104.30 -4.14 0.50 N 3 1 N7 B DG 1 ? ? C8 B DG 1 ? ? N9 B DG 1 ? ? 120.25 113.10 7.15 0.50 N 4 1 C8 B DG 1 ? ? N9 B DG 1 ? ? C4 B DG 1 ? ? 102.77 106.40 -3.63 0.40 N 5 1 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 111.06 108.30 2.76 0.30 N 6 1 "O4'" B DA 3 ? ? "C1'" B DA 3 ? ? N9 B DA 3 ? ? 110.93 108.30 2.63 0.30 N 7 1 C5 B DA 3 ? ? N7 B DA 3 ? ? C8 B DA 3 ? ? 100.06 103.90 -3.84 0.50 N 8 1 N7 B DA 3 ? ? C8 B DA 3 ? ? N9 B DA 3 ? ? 120.05 113.80 6.25 0.50 N 9 1 C8 B DA 3 ? ? N9 B DA 3 ? ? C4 B DA 3 ? ? 102.67 105.80 -3.13 0.40 N 10 1 "O4'" B DC 4 ? ? "C1'" B DC 4 ? ? N1 B DC 4 ? ? 110.61 108.30 2.31 0.30 N 11 1 "O4'" B DA 5 ? ? "C1'" B DA 5 ? ? N9 B DA 5 ? ? 111.97 108.30 3.67 0.30 N 12 1 N1 B DA 5 ? ? C2 B DA 5 ? ? N3 B DA 5 ? ? 126.29 129.30 -3.01 0.50 N 13 1 C5 B DA 5 ? ? N7 B DA 5 ? ? C8 B DA 5 ? ? 100.07 103.90 -3.83 0.50 N 14 1 N7 B DA 5 ? ? C8 B DA 5 ? ? N9 B DA 5 ? ? 120.00 113.80 6.20 0.50 N 15 1 C8 B DA 5 ? ? N9 B DA 5 ? ? C4 B DA 5 ? ? 102.63 105.80 -3.17 0.40 N 16 1 "O4'" B DA 6 ? ? "C1'" B DA 6 ? ? N9 B DA 6 ? ? 110.37 108.30 2.07 0.30 N 17 1 C5 B DA 6 ? ? N7 B DA 6 ? ? C8 B DA 6 ? ? 100.09 103.90 -3.81 0.50 N 18 1 N7 B DA 6 ? ? C8 B DA 6 ? ? N9 B DA 6 ? ? 120.23 113.80 6.43 0.50 N 19 1 C8 B DA 6 ? ? N9 B DA 6 ? ? C4 B DA 6 ? ? 102.47 105.80 -3.33 0.40 N 20 1 "O4'" B DA 7 ? ? "C1'" B DA 7 ? ? N9 B DA 7 ? ? 112.05 108.30 3.75 0.30 N 21 1 C5 B DA 7 ? ? N7 B DA 7 ? ? C8 B DA 7 ? ? 100.04 103.90 -3.86 0.50 N 22 1 N7 B DA 7 ? ? C8 B DA 7 ? ? N9 B DA 7 ? ? 120.17 113.80 6.37 0.50 N 23 1 C8 B DA 7 ? ? N9 B DA 7 ? ? C4 B DA 7 ? ? 102.72 105.80 -3.08 0.40 N 24 1 "O4'" B DC 8 ? ? "C1'" B DC 8 ? ? N1 B DC 8 ? ? 110.49 108.30 2.19 0.30 N 25 1 "O4'" C DG 1 ? ? "C1'" C DG 1 ? ? N9 C DG 1 ? ? 111.28 108.30 2.98 0.30 N 26 1 C5 C DG 1 ? ? N7 C DG 1 ? ? C8 C DG 1 ? ? 100.28 104.30 -4.02 0.50 N 27 1 N7 C DG 1 ? ? C8 C DG 1 ? ? N9 C DG 1 ? ? 120.13 113.10 7.03 0.50 N 28 1 C8 C DG 1 ? ? N9 C DG 1 ? ? C4 C DG 1 ? ? 102.70 106.40 -3.70 0.40 N 29 1 "O4'" C DT 2 ? ? "C1'" C DT 2 ? ? N1 C DT 2 ? ? 110.90 108.30 2.60 0.30 N 30 1 "O4'" C DT 3 ? ? "C1'" C DT 3 ? ? N1 C DT 3 ? ? 110.13 108.30 1.83 0.30 N 31 1 "O4'" C DT 4 ? ? "C1'" C DT 4 ? ? N1 C DT 4 ? ? 111.05 108.30 2.75 0.30 N 32 1 "O4'" C DG 5 ? ? "C1'" C DG 5 ? ? N9 C DG 5 ? ? 111.41 108.30 3.11 0.30 N 33 1 C5 C DG 5 ? ? N7 C DG 5 ? ? C8 C DG 5 ? ? 100.19 104.30 -4.11 0.50 N 34 1 N7 C DG 5 ? ? C8 C DG 5 ? ? N9 C DG 5 ? ? 120.24 113.10 7.14 0.50 N 35 1 C8 C DG 5 ? ? N9 C DG 5 ? ? C4 C DG 5 ? ? 102.69 106.40 -3.71 0.40 N 36 1 "O4'" C DT 6 ? ? "C1'" C DT 6 ? ? N1 C DT 6 ? ? 112.07 108.30 3.77 0.30 N 37 1 "O4'" C DG 7 ? ? "C1'" C DG 7 ? ? N9 C DG 7 ? ? 110.51 108.30 2.21 0.30 N 38 1 C5 C DG 7 ? ? N7 C DG 7 ? ? C8 C DG 7 ? ? 100.21 104.30 -4.09 0.50 N 39 1 N7 C DG 7 ? ? C8 C DG 7 ? ? N9 C DG 7 ? ? 120.26 113.10 7.16 0.50 N 40 1 C8 C DG 7 ? ? N9 C DG 7 ? ? C4 C DG 7 ? ? 102.72 106.40 -3.68 0.40 N 41 1 "O4'" C DC 8 ? ? "C1'" C DC 8 ? ? N1 C DC 8 ? ? 110.62 108.30 2.32 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 8 ? ? -66.76 -173.11 2 1 ARG A 17 ? ? -41.07 -77.01 3 1 ARG A 31 ? ? -64.61 -74.71 4 1 ILE A 35 ? ? -48.78 -15.60 5 1 LYS A 51 ? ? -69.30 -78.70 6 1 PRO A 53 ? ? -42.15 -76.64 7 1 PRO A 70 ? ? -50.34 -70.10 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 31 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.096 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 "C3'" ? B DA 5 ? 'WRONG HAND' . 2 1 "C3'" ? C DG 1 ? 'WRONG HAND' . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 1 ? C VAL 1 2 1 Y 1 A GLN 2 ? C GLN 2 3 1 Y 1 A PRO 76 ? C PRO 76 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1HRY 'double helix' 1HRY 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 8 1_555 0.540 0.214 -0.091 -1.530 0.324 -0.357 1 B_DG1:DC8_C B 1 ? C 8 ? 19 1 1 A DC 2 1_555 B DG 7 1_555 -0.616 0.149 -0.672 7.429 -3.014 0.190 2 B_DC2:DG7_C B 2 ? C 7 ? 19 1 1 A DA 3 1_555 B DT 6 1_555 -0.071 0.149 -0.498 3.416 -5.665 -0.546 3 B_DA3:DT6_C B 3 ? C 6 ? 20 1 1 A DC 4 1_555 B DG 5 1_555 -0.135 0.273 -0.069 2.123 3.059 1.097 4 B_DC4:DG5_C B 4 ? C 5 ? 19 1 1 A DA 5 1_555 B DT 4 1_555 0.273 0.246 -0.471 -4.188 -5.319 0.542 5 B_DA5:DT4_C B 5 ? C 4 ? 20 1 1 A DA 6 1_555 B DT 3 1_555 0.133 0.153 -0.462 7.944 -0.737 -11.638 6 B_DA6:DT3_C B 6 ? C 3 ? 20 1 1 A DA 7 1_555 B DT 2 1_555 0.244 0.198 -0.313 10.482 11.179 -16.683 7 B_DA7:DT2_C B 7 ? C 2 ? 20 1 1 A DC 8 1_555 B DG 1 1_555 -0.672 0.201 -0.570 15.610 -2.466 1.231 8 B_DC8:DG1_C B 8 ? C 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 8 1_555 A DC 2 1_555 B DG 7 1_555 0.264 0.066 3.286 3.479 19.530 21.721 -4.193 0.249 2.519 42.200 -7.518 29.336 1 BB_DG1DC2:DG7DC8_CC B 1 ? C 8 ? B 2 ? C 7 ? 1 A DC 2 1_555 B DG 7 1_555 A DA 3 1_555 B DT 6 1_555 -0.340 0.219 3.735 -1.261 33.660 32.940 -3.097 0.302 2.830 46.843 1.755 46.777 2 BB_DC2DA3:DT6DG7_CC B 2 ? C 7 ? B 3 ? C 6 ? 1 A DA 3 1_555 B DT 6 1_555 A DC 4 1_555 B DG 5 1_555 -0.113 -0.192 3.779 -4.306 11.202 26.719 -3.173 -0.850 3.403 22.832 8.777 29.246 3 BB_DA3DC4:DG5DT6_CC B 3 ? C 6 ? B 4 ? C 5 ? 1 A DC 4 1_555 B DG 5 1_555 A DA 5 1_555 B DT 4 1_555 0.179 0.539 4.340 3.406 11.123 32.752 -1.414 0.409 4.288 18.995 -5.817 34.703 4 BB_DC4DA5:DT4DG5_CC B 4 ? C 5 ? B 5 ? C 4 ? 1 A DA 5 1_555 B DT 4 1_555 A DA 6 1_555 B DT 3 1_555 -1.246 0.561 3.918 0.460 19.898 23.016 -4.013 2.498 3.332 41.320 -0.955 30.340 5 BB_DA5DA6:DT3DT4_CC B 5 ? C 4 ? B 6 ? C 3 ? 1 A DA 6 1_555 B DT 3 1_555 A DA 7 1_555 B DT 2 1_555 0.128 -0.010 4.107 -2.631 0.723 25.342 -0.281 -1.234 4.071 1.642 5.976 25.487 6 BB_DA6DA7:DT2DT3_CC B 6 ? C 3 ? B 7 ? C 2 ? 1 A DA 7 1_555 B DT 2 1_555 A DC 8 1_555 B DG 1 1_555 0.214 -0.559 3.880 -1.059 9.649 20.382 -5.488 -0.994 3.264 25.484 2.796 22.553 7 BB_DA7DC8:DG1DT2_CC B 7 ? C 2 ? B 8 ? C 1 ? #