data_1HUT # _entry.id 1HUT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1HUT RCSB PDE013 WWPDB D_1000174036 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1HUT _pdbx_database_status.recvd_initial_deposition_date 1993-05-27 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Padmanabhan, K.' 1 'Padmanabhan, K.P.' 2 'Ferrara, J.D.' 3 'Sadler, J.E.' 4 'Tulinsky, A.' 5 # _citation.id primary _citation.title 'The structure of alpha-thrombin inhibited by a 15-mer single-stranded DNA aptamer.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 268 _citation.page_first 17651 _citation.page_last 17654 _citation.year 1993 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8102368 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Padmanabhan, K.' 1 primary 'Padmanabhan, K.P.' 2 primary 'Ferrara, J.D.' 3 primary 'Sadler, J.E.' 4 primary 'Tulinsky, A.' 5 # _cell.entry_id 1HUT _cell.length_a 56.520 _cell.length_b 77.440 _cell.length_c 99.520 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1HUT _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA 5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3' ; 4743.051 1 ? ? ? ? 2 polymer nat 'ALPHA-Thrombin light chain' 4096.534 1 3.4.21.5 ? 'RESIDUES 328-363' ? 3 polymer nat 'ALPHA-Thrombin heavy chain' 29780.219 1 3.4.21.5 ? 'RESIDUES 364-622' ? 4 non-polymer syn 'D-phenylalanyl-N-[(3S)-6-carbamimidamido-1-chloro-2-oxohexan-3-yl]-L-prolinamide' 450.962 1 ? ? ? ? 5 water nat water 18.015 130 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 2 'COAGULATION FACTOR II, THROMBIN' 3 'COAGULATION FACTOR II, THROMBIN' # loop_ _entity_name_sys.entity_id _entity_name_sys.name 2 E.C.3.4.21.5 3 E.C.3.4.21.5 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DG)(DT)(DT)(DG)(DG)(DT)(DG)(DT)(DG)(DG)(DT)(DT)(DG)(DG)' GGTTGGTGTGGTTGG D ? 2 'polypeptide(L)' no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR L ? 3 'polypeptide(L)' no no ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; H ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DT n 1 4 DT n 1 5 DG n 1 6 DG n 1 7 DT n 1 8 DG n 1 9 DT n 1 10 DG n 1 11 DG n 1 12 DT n 1 13 DT n 1 14 DG n 1 15 DG n 2 1 THR n 2 2 PHE n 2 3 GLY n 2 4 SER n 2 5 GLY n 2 6 GLU n 2 7 ALA n 2 8 ASP n 2 9 CYS n 2 10 GLY n 2 11 LEU n 2 12 ARG n 2 13 PRO n 2 14 LEU n 2 15 PHE n 2 16 GLU n 2 17 LYS n 2 18 LYS n 2 19 SER n 2 20 LEU n 2 21 GLU n 2 22 ASP n 2 23 LYS n 2 24 THR n 2 25 GLU n 2 26 ARG n 2 27 GLU n 2 28 LEU n 2 29 LEU n 2 30 GLU n 2 31 SER n 2 32 TYR n 2 33 ILE n 2 34 ASP n 2 35 GLY n 2 36 ARG n 3 1 ILE n 3 2 VAL n 3 3 GLU n 3 4 GLY n 3 5 SER n 3 6 ASP n 3 7 ALA n 3 8 GLU n 3 9 ILE n 3 10 GLY n 3 11 MET n 3 12 SER n 3 13 PRO n 3 14 TRP n 3 15 GLN n 3 16 VAL n 3 17 MET n 3 18 LEU n 3 19 PHE n 3 20 ARG n 3 21 LYS n 3 22 SER n 3 23 PRO n 3 24 GLN n 3 25 GLU n 3 26 LEU n 3 27 LEU n 3 28 CYS n 3 29 GLY n 3 30 ALA n 3 31 SER n 3 32 LEU n 3 33 ILE n 3 34 SER n 3 35 ASP n 3 36 ARG n 3 37 TRP n 3 38 VAL n 3 39 LEU n 3 40 THR n 3 41 ALA n 3 42 ALA n 3 43 HIS n 3 44 CYS n 3 45 LEU n 3 46 LEU n 3 47 TYR n 3 48 PRO n 3 49 PRO n 3 50 TRP n 3 51 ASP n 3 52 LYS n 3 53 ASN n 3 54 PHE n 3 55 THR n 3 56 GLU n 3 57 ASN n 3 58 ASP n 3 59 LEU n 3 60 LEU n 3 61 VAL n 3 62 ARG n 3 63 ILE n 3 64 GLY n 3 65 LYS n 3 66 HIS n 3 67 SER n 3 68 ARG n 3 69 THR n 3 70 ARG n 3 71 TYR n 3 72 GLU n 3 73 ARG n 3 74 ASN n 3 75 ILE n 3 76 GLU n 3 77 LYS n 3 78 ILE n 3 79 SER n 3 80 MET n 3 81 LEU n 3 82 GLU n 3 83 LYS n 3 84 ILE n 3 85 TYR n 3 86 ILE n 3 87 HIS n 3 88 PRO n 3 89 ARG n 3 90 TYR n 3 91 ASN n 3 92 TRP n 3 93 ARG n 3 94 GLU n 3 95 ASN n 3 96 LEU n 3 97 ASP n 3 98 ARG n 3 99 ASP n 3 100 ILE n 3 101 ALA n 3 102 LEU n 3 103 MET n 3 104 LYS n 3 105 LEU n 3 106 LYS n 3 107 LYS n 3 108 PRO n 3 109 VAL n 3 110 ALA n 3 111 PHE n 3 112 SER n 3 113 ASP n 3 114 TYR n 3 115 ILE n 3 116 HIS n 3 117 PRO n 3 118 VAL n 3 119 CYS n 3 120 LEU n 3 121 PRO n 3 122 ASP n 3 123 ARG n 3 124 GLU n 3 125 THR n 3 126 ALA n 3 127 ALA n 3 128 SER n 3 129 LEU n 3 130 LEU n 3 131 GLN n 3 132 ALA n 3 133 GLY n 3 134 TYR n 3 135 LYS n 3 136 GLY n 3 137 ARG n 3 138 VAL n 3 139 THR n 3 140 GLY n 3 141 TRP n 3 142 GLY n 3 143 ASN n 3 144 LEU n 3 145 LYS n 3 146 GLU n 3 147 THR n 3 148 TRP n 3 149 THR n 3 150 ALA n 3 151 ASN n 3 152 VAL n 3 153 GLY n 3 154 LYS n 3 155 GLY n 3 156 GLN n 3 157 PRO n 3 158 SER n 3 159 VAL n 3 160 LEU n 3 161 GLN n 3 162 VAL n 3 163 VAL n 3 164 ASN n 3 165 LEU n 3 166 PRO n 3 167 ILE n 3 168 VAL n 3 169 GLU n 3 170 ARG n 3 171 PRO n 3 172 VAL n 3 173 CYS n 3 174 LYS n 3 175 ASP n 3 176 SER n 3 177 THR n 3 178 ARG n 3 179 ILE n 3 180 ARG n 3 181 ILE n 3 182 THR n 3 183 ASP n 3 184 ASN n 3 185 MET n 3 186 PHE n 3 187 CYS n 3 188 ALA n 3 189 GLY n 3 190 TYR n 3 191 LYS n 3 192 PRO n 3 193 ASP n 3 194 GLU n 3 195 GLY n 3 196 LYS n 3 197 ARG n 3 198 GLY n 3 199 ASP n 3 200 ALA n 3 201 CYS n 3 202 GLU n 3 203 GLY n 3 204 ASP n 3 205 SER n 3 206 GLY n 3 207 GLY n 3 208 PRO n 3 209 PHE n 3 210 VAL n 3 211 MET n 3 212 LYS n 3 213 SER n 3 214 PRO n 3 215 PHE n 3 216 ASN n 3 217 ASN n 3 218 ARG n 3 219 TRP n 3 220 TYR n 3 221 GLN n 3 222 MET n 3 223 GLY n 3 224 ILE n 3 225 VAL n 3 226 SER n 3 227 TRP n 3 228 GLY n 3 229 GLU n 3 230 GLY n 3 231 CYS n 3 232 ASP n 3 233 ARG n 3 234 ASP n 3 235 GLY n 3 236 LYS n 3 237 TYR n 3 238 GLY n 3 239 PHE n 3 240 TYR n 3 241 THR n 3 242 HIS n 3 243 VAL n 3 244 PHE n 3 245 ARG n 3 246 LEU n 3 247 LYS n 3 248 LYS n 3 249 TRP n 3 250 ILE n 3 251 GLN n 3 252 LYS n 3 253 VAL n 3 254 ILE n 3 255 ASP n 3 256 GLN n 3 257 PHE n 3 258 GLY n 3 259 GLU n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 2 1 sample ? ? human 'Homo sapiens' 9606 Homo ? ? BLOOD ? PLASMA ? ? ? ? ? ? ? ? ? ? ? 3 1 sample ? ? human 'Homo sapiens' 9606 Homo ? ? BLOOD ? PLASMA ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP THRB_HUMAN 2 TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR 328 P00734 ? 2 UNP THRB_HUMAN 3 ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; 364 P00734 ? 3 PDB 1HUT 1 GGTTGGTGTGGTTGG 1 1HUT ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1HUT L 1 H 36 ? P00734 328 ? 363 ? 1 15 2 2 1HUT H 1 ? 259 ? P00734 364 ? 622 ? 16 247 3 3 1HUT D 1 ? 15 ? 1HUT 401 ? 415 ? 401 415 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0G7 peptide-like . 'D-phenylalanyl-N-[(3S)-6-carbamimidamido-1-chloro-2-oxohexan-3-yl]-L-prolinamide' 'd-Phe-Pro-Arg chloromethylketone (PPACK)' 'C21 H31 Cl N6 O3' 450.962 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1HUT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.78 _exptl_crystal.density_percent_sol 55.72 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS II' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1HUT _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.87 _reflns.number_obs 6990 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 1HUT _refine.ls_number_reflns_obs 6806 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 2.9 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.159 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.159 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2340 _refine_hist.pdbx_number_atoms_nucleic_acid 315 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 130 _refine_hist.number_atoms_total 2815 _refine_hist.d_res_high 2.9 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.02 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 3.3 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1HUT _struct.title 'THE STRUCTURE OF ALPHA-THROMBIN INHIBITED BY A 15-MER SINGLE-STRANDED DNA APTAMER' _struct.pdbx_descriptor 'ALPHA-THROMBIN (E.C.3.4.21.5)/DNA, PPACK PEPTIDE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1HUT _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR/DNA' _struct_keywords.text 'THROMBIN, BLOOD CLOTTING, HYDROLASE-HYDROLASE INHIBITOR-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 4 ASP C 122 ? LEU C 130 ? ASP H 125 LEU H 130 1 ? 9 HELX_P HELX_P2 5 GLU C 169 ? LYS C 174 ? GLU H 164 LYS H 169 1 ? 6 HELX_P HELX_P3 6 LEU C 246 ? PHE C 257 ? LEU H 234 PHE H 245 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? B CYS 9 SG ? ? ? 1_555 C CYS 119 SG ? ? L CYS 1 H CYS 122 1_555 ? ? ? ? ? ? ? 2.025 ? disulf2 disulf ? ? C CYS 28 SG ? ? ? 1_555 C CYS 44 SG ? ? H CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? 2.023 ? disulf3 disulf ? ? C CYS 173 SG ? ? ? 1_555 C CYS 187 SG ? ? H CYS 168 H CYS 182 1_555 ? ? ? ? ? ? ? 2.003 ? disulf4 disulf ? ? C CYS 201 SG ? ? ? 1_555 C CYS 231 SG ? ? H CYS 191 H CYS 220 1_555 ? ? ? ? ? ? ? 2.016 ? hydrog1 hydrog ? ? A DG 1 N7 ? ? ? 1_555 A DG 6 N2 ? ? D DG 401 D DG 406 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog2 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 6 N1 ? ? D DG 401 D DG 406 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog3 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DG 15 O6 ? ? D DG 401 D DG 415 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog4 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DG 15 N7 ? ? D DG 401 D DG 415 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog5 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 5 O6 ? ? D DG 402 D DG 405 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DG 14 N2 ? ? D DG 402 D DG 414 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? hydrog7 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DG 11 O6 ? ? D DG 405 D DG 411 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? hydrog8 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DG 10 N1 ? ? D DG 406 D DG 410 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? hydrog9 hydrog ? ? A DG 10 N7 ? ? ? 1_555 A DG 15 N2 ? ? D DG 410 D DG 415 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? hydrog10 hydrog ? ? A DG 11 N1 ? ? ? 1_555 A DG 14 O6 ? ? D DG 411 D DG 414 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog11 hydrog ? ? A DG 11 N2 ? ? ? 1_555 A DG 14 N7 ? ? D DG 411 D DG 414 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 22 _struct_mon_prot_cis.label_asym_id C _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code A _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 36 _struct_mon_prot_cis.auth_asym_id H _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 23 _struct_mon_prot_cis.pdbx_label_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 37 _struct_mon_prot_cis.pdbx_auth_asym_id_2 H _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -4.89 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU C 25 ? LEU C 26 ? GLU H 39 LEU H 40 A 2 LEU C 18 ? ARG C 20 ? LEU H 33 ARG H 35 A 3 LEU C 59 ? ILE C 63 ? LEU H 64 ILE H 68 A 4 LYS C 77 ? SER C 79 ? LYS H 81 SER H 83 B 1 SER C 31 ? LEU C 32 ? SER H 45 LEU H 46 B 2 TRP C 37 ? THR C 40 ? TRP H 51 THR H 54 B 3 ALA C 101 ? LEU C 105 ? ALA H 104 LEU H 108 B 4 LEU C 81 ? ILE C 86 ? LEU H 85 ILE H 90 C 1 LEU C 46 ? TYR C 47 A LEU H 60 TYR H 60 C 2 LYS C 52 F ASN C 53 G LYS H 60 ASN H 60 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU C 25 ? O GLU H 39 N ARG C 20 ? N ARG H 35 A 2 3 O PHE C 19 ? O PHE H 34 N LEU C 60 ? N LEU H 65 A 3 4 N ILE C 63 ? N ILE H 68 O LYS C 77 ? O LYS H 81 B 1 2 O SER C 31 ? O SER H 45 N LEU C 39 ? N LEU H 53 B 2 3 N THR C 40 ? N THR H 54 O ALA C 101 ? O ALA H 104 B 3 4 O LYS C 104 ? O LYS H 107 N GLU C 82 ? N GLU H 86 C 1 2 O TYR C 47 A O TYR H 60 N LYS C 52 F N LYS H 60 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 14 'BINDING SITE FOR RESIDUE 0G7 H 1' CAT Author ? ? ? ? 3 'CATALYTIC SITE' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 HIS C 43 ? HIS H 57 . ? 1_555 ? 2 AC1 14 TYR C 47 A TYR H 60 . ? 1_555 ? 3 AC1 14 TRP C 50 D TRP H 60 . ? 1_555 ? 4 AC1 14 ASN C 95 ? ASN H 98 . ? 1_555 ? 5 AC1 14 LEU C 96 ? LEU H 99 . ? 1_555 ? 6 AC1 14 ILE C 179 ? ILE H 174 . ? 1_555 ? 7 AC1 14 ASP C 199 ? ASP H 189 . ? 1_555 ? 8 AC1 14 ALA C 200 ? ALA H 190 . ? 1_555 ? 9 AC1 14 CYS C 201 ? CYS H 191 . ? 1_555 ? 10 AC1 14 SER C 205 ? SER H 195 . ? 1_555 ? 11 AC1 14 SER C 226 ? SER H 214 . ? 1_555 ? 12 AC1 14 TRP C 227 ? TRP H 215 . ? 1_555 ? 13 AC1 14 GLY C 228 ? GLY H 216 . ? 1_555 ? 14 AC1 14 CYS C 231 ? CYS H 220 . ? 1_555 ? 15 CAT 3 HIS C 43 ? HIS H 57 . ? 1_555 ? 16 CAT 3 ASP C 99 ? ASP H 102 . ? 1_555 ? 17 CAT 3 SER C 205 ? SER H 195 . ? 1_555 ? # _database_PDB_matrix.entry_id 1HUT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1HUT _atom_sites.fract_transf_matrix[1][1] 0.017693 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012913 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010048 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 401 401 DG G D . n A 1 2 DG 2 402 402 DG G D . n A 1 3 DT 3 403 403 DT T D . n A 1 4 DT 4 404 404 DT T D . n A 1 5 DG 5 405 405 DG G D . n A 1 6 DG 6 406 406 DG G D . n A 1 7 DT 7 407 407 DT T D . n A 1 8 DG 8 408 408 DG G D . n A 1 9 DT 9 409 409 DT T D . n A 1 10 DG 10 410 410 DG G D . n A 1 11 DG 11 411 411 DG G D . n A 1 12 DT 12 412 412 DT T D . n A 1 13 DT 13 413 413 DT T D . n A 1 14 DG 14 414 414 DG G D . n A 1 15 DG 15 415 415 DG G D . n B 2 1 THR 1 1 1 THR THR L H n B 2 2 PHE 2 1 1 PHE PHE L G n B 2 3 GLY 3 1 1 GLY GLY L F n B 2 4 SER 4 1 1 SER SER L E n B 2 5 GLY 5 1 1 GLY GLY L D n B 2 6 GLU 6 1 1 GLU GLU L C n B 2 7 ALA 7 1 1 ALA ALA L B n B 2 8 ASP 8 1 1 ASP ASP L A n B 2 9 CYS 9 1 1 CYS CYS L . n B 2 10 GLY 10 2 2 GLY GLY L . n B 2 11 LEU 11 3 3 LEU LEU L . n B 2 12 ARG 12 4 4 ARG ARG L . n B 2 13 PRO 13 5 5 PRO PRO L . n B 2 14 LEU 14 6 6 LEU LEU L . n B 2 15 PHE 15 7 7 PHE PHE L . n B 2 16 GLU 16 8 8 GLU GLU L . n B 2 17 LYS 17 9 9 LYS LYS L . n B 2 18 LYS 18 10 10 LYS LYS L . n B 2 19 SER 19 11 11 SER SER L . n B 2 20 LEU 20 12 12 LEU LEU L . n B 2 21 GLU 21 13 13 GLU GLU L . n B 2 22 ASP 22 14 14 ASP ASP L . n B 2 23 LYS 23 14 14 LYS LYS L A n B 2 24 THR 24 14 14 THR THR L B n B 2 25 GLU 25 14 14 GLU GLU L C n B 2 26 ARG 26 14 14 ARG ARG L D n B 2 27 GLU 27 14 14 GLU GLU L E n B 2 28 LEU 28 14 14 LEU LEU L F n B 2 29 LEU 29 14 14 LEU LEU L G n B 2 30 GLU 30 14 14 GLU GLU L H n B 2 31 SER 31 14 14 SER SER L I n B 2 32 TYR 32 14 14 TYR TYR L J n B 2 33 ILE 33 14 14 ILE ILE L K n B 2 34 ASP 34 14 14 ASP ASP L L n B 2 35 GLY 35 14 14 GLY GLY L M n B 2 36 ARG 36 15 15 ARG ARG L . n C 3 1 ILE 1 16 16 ILE ILE H . n C 3 2 VAL 2 17 17 VAL VAL H . n C 3 3 GLU 3 18 18 GLU GLU H . n C 3 4 GLY 4 19 19 GLY GLY H . n C 3 5 SER 5 20 20 SER SER H . n C 3 6 ASP 6 21 21 ASP ASP H . n C 3 7 ALA 7 22 22 ALA ALA H . n C 3 8 GLU 8 23 23 GLU GLU H . n C 3 9 ILE 9 24 24 ILE ILE H . n C 3 10 GLY 10 25 25 GLY GLY H . n C 3 11 MET 11 26 26 MET MET H . n C 3 12 SER 12 27 27 SER SER H . n C 3 13 PRO 13 28 28 PRO PRO H . n C 3 14 TRP 14 29 29 TRP TRP H . n C 3 15 GLN 15 30 30 GLN GLN H . n C 3 16 VAL 16 31 31 VAL VAL H . n C 3 17 MET 17 32 32 MET MET H . n C 3 18 LEU 18 33 33 LEU LEU H . n C 3 19 PHE 19 34 34 PHE PHE H . n C 3 20 ARG 20 35 35 ARG ARG H . n C 3 21 LYS 21 36 36 LYS LYS H . n C 3 22 SER 22 36 36 SER SER H A n C 3 23 PRO 23 37 37 PRO PRO H . n C 3 24 GLN 24 38 38 GLN GLN H . n C 3 25 GLU 25 39 39 GLU GLU H . n C 3 26 LEU 26 40 40 LEU LEU H . n C 3 27 LEU 27 41 41 LEU LEU H . n C 3 28 CYS 28 42 42 CYS CYS H . n C 3 29 GLY 29 43 43 GLY GLY H . n C 3 30 ALA 30 44 44 ALA ALA H . n C 3 31 SER 31 45 45 SER SER H . n C 3 32 LEU 32 46 46 LEU LEU H . n C 3 33 ILE 33 47 47 ILE ILE H . n C 3 34 SER 34 48 48 SER SER H . n C 3 35 ASP 35 49 49 ASP ASP H . n C 3 36 ARG 36 50 50 ARG ARG H . n C 3 37 TRP 37 51 51 TRP TRP H . n C 3 38 VAL 38 52 52 VAL VAL H . n C 3 39 LEU 39 53 53 LEU LEU H . n C 3 40 THR 40 54 54 THR THR H . n C 3 41 ALA 41 55 55 ALA ALA H . n C 3 42 ALA 42 56 56 ALA ALA H . n C 3 43 HIS 43 57 57 HIS HIS H . n C 3 44 CYS 44 58 58 CYS CYS H . n C 3 45 LEU 45 59 59 LEU LEU H . n C 3 46 LEU 46 60 60 LEU LEU H . n C 3 47 TYR 47 60 60 TYR TYR H A n C 3 48 PRO 48 60 60 PRO PRO H B n C 3 49 PRO 49 60 60 PRO PRO H C n C 3 50 TRP 50 60 60 TRP TRP H D n C 3 51 ASP 51 60 60 ASP ASP H E n C 3 52 LYS 52 60 60 LYS LYS H F n C 3 53 ASN 53 60 60 ASN ASN H G n C 3 54 PHE 54 60 60 PHE PHE H H n C 3 55 THR 55 60 60 THR THR H I n C 3 56 GLU 56 61 61 GLU GLU H . n C 3 57 ASN 57 62 62 ASN ASN H . n C 3 58 ASP 58 63 63 ASP ASP H . n C 3 59 LEU 59 64 64 LEU LEU H . n C 3 60 LEU 60 65 65 LEU LEU H . n C 3 61 VAL 61 66 66 VAL VAL H . n C 3 62 ARG 62 67 67 ARG ARG H . n C 3 63 ILE 63 68 68 ILE ILE H . n C 3 64 GLY 64 69 69 GLY GLY H . n C 3 65 LYS 65 70 70 LYS LYS H . n C 3 66 HIS 66 71 71 HIS HIS H . n C 3 67 SER 67 72 72 SER SER H . n C 3 68 ARG 68 73 73 ARG ARG H . n C 3 69 THR 69 74 74 THR THR H . n C 3 70 ARG 70 75 75 ARG ARG H . n C 3 71 TYR 71 76 76 TYR TYR H . n C 3 72 GLU 72 77 77 GLU GLU H . n C 3 73 ARG 73 77 77 ARG ARG H A n C 3 74 ASN 74 78 78 ASN ASN H . n C 3 75 ILE 75 79 79 ILE ILE H . n C 3 76 GLU 76 80 80 GLU GLU H . n C 3 77 LYS 77 81 81 LYS LYS H . n C 3 78 ILE 78 82 82 ILE ILE H . n C 3 79 SER 79 83 83 SER SER H . n C 3 80 MET 80 84 84 MET MET H . n C 3 81 LEU 81 85 85 LEU LEU H . n C 3 82 GLU 82 86 86 GLU GLU H . n C 3 83 LYS 83 87 87 LYS LYS H . n C 3 84 ILE 84 88 88 ILE ILE H . n C 3 85 TYR 85 89 89 TYR TYR H . n C 3 86 ILE 86 90 90 ILE ILE H . n C 3 87 HIS 87 91 91 HIS HIS H . n C 3 88 PRO 88 92 92 PRO PRO H . n C 3 89 ARG 89 93 93 ARG ARG H . n C 3 90 TYR 90 94 94 TYR TYR H . n C 3 91 ASN 91 95 95 ASN ASN H . n C 3 92 TRP 92 96 96 TRP TRP H . n C 3 93 ARG 93 97 97 ARG ARG H . n C 3 94 GLU 94 97 97 GLU GLU H A n C 3 95 ASN 95 98 98 ASN ASN H . n C 3 96 LEU 96 99 99 LEU LEU H . n C 3 97 ASP 97 100 100 ASP ASP H . n C 3 98 ARG 98 101 101 ARG ARG H . n C 3 99 ASP 99 102 102 ASP ASP H . n C 3 100 ILE 100 103 103 ILE ILE H . n C 3 101 ALA 101 104 104 ALA ALA H . n C 3 102 LEU 102 105 105 LEU LEU H . n C 3 103 MET 103 106 106 MET MET H . n C 3 104 LYS 104 107 107 LYS LYS H . n C 3 105 LEU 105 108 108 LEU LEU H . n C 3 106 LYS 106 109 109 LYS LYS H . n C 3 107 LYS 107 110 110 LYS LYS H . n C 3 108 PRO 108 111 111 PRO PRO H . n C 3 109 VAL 109 112 112 VAL VAL H . n C 3 110 ALA 110 113 113 ALA ALA H . n C 3 111 PHE 111 114 114 PHE PHE H . n C 3 112 SER 112 115 115 SER SER H . n C 3 113 ASP 113 116 116 ASP ASP H . n C 3 114 TYR 114 117 117 TYR TYR H . n C 3 115 ILE 115 118 118 ILE ILE H . n C 3 116 HIS 116 119 119 HIS HIS H . n C 3 117 PRO 117 120 120 PRO PRO H . n C 3 118 VAL 118 121 121 VAL VAL H . n C 3 119 CYS 119 122 122 CYS CYS H . n C 3 120 LEU 120 123 123 LEU LEU H . n C 3 121 PRO 121 124 124 PRO PRO H . n C 3 122 ASP 122 125 125 ASP ASP H . n C 3 123 ARG 123 126 126 ARG ARG H . n C 3 124 GLU 124 127 127 GLU GLU H . n C 3 125 THR 125 128 128 THR THR H . n C 3 126 ALA 126 129 129 ALA ALA H . n C 3 127 ALA 127 129 129 ALA ALA H A n C 3 128 SER 128 129 129 SER SER H B n C 3 129 LEU 129 129 129 LEU LEU H C n C 3 130 LEU 130 130 130 LEU LEU H . n C 3 131 GLN 131 131 131 GLN GLN H . n C 3 132 ALA 132 132 132 ALA ALA H . n C 3 133 GLY 133 133 133 GLY GLY H . n C 3 134 TYR 134 134 134 TYR TYR H . n C 3 135 LYS 135 135 135 LYS LYS H . n C 3 136 GLY 136 136 136 GLY GLY H . n C 3 137 ARG 137 137 137 ARG ARG H . n C 3 138 VAL 138 138 138 VAL VAL H . n C 3 139 THR 139 139 139 THR THR H . n C 3 140 GLY 140 140 140 GLY GLY H . n C 3 141 TRP 141 141 141 TRP TRP H . n C 3 142 GLY 142 142 142 GLY GLY H . n C 3 143 ASN 143 143 143 ASN ASN H . n C 3 144 LEU 144 144 144 LEU LEU H . n C 3 145 LYS 145 145 145 LYS LYS H . n C 3 146 GLU 146 146 146 GLU GLU H . n C 3 147 THR 147 147 147 THR THR H . n C 3 148 TRP 148 148 148 TRP TRP H . n C 3 149 THR 149 148 ? ? ? H A n C 3 150 ALA 150 148 ? ? ? H B n C 3 151 ASN 151 148 ? ? ? H C n C 3 152 VAL 152 148 ? ? ? H D n C 3 153 GLY 153 148 ? ? ? H E n C 3 154 LYS 154 148 ? ? ? H F n C 3 155 GLY 155 150 150 GLY GLY H . n C 3 156 GLN 156 151 151 GLN GLN H . n C 3 157 PRO 157 152 152 PRO PRO H . n C 3 158 SER 158 153 153 SER SER H . n C 3 159 VAL 159 154 154 VAL VAL H . n C 3 160 LEU 160 155 155 LEU LEU H . n C 3 161 GLN 161 156 156 GLN GLN H . n C 3 162 VAL 162 157 157 VAL VAL H . n C 3 163 VAL 163 158 158 VAL VAL H . n C 3 164 ASN 164 159 159 ASN ASN H . n C 3 165 LEU 165 160 160 LEU LEU H . n C 3 166 PRO 166 161 161 PRO PRO H . n C 3 167 ILE 167 162 162 ILE ILE H . n C 3 168 VAL 168 163 163 VAL VAL H . n C 3 169 GLU 169 164 164 GLU GLU H . n C 3 170 ARG 170 165 165 ARG ARG H . n C 3 171 PRO 171 166 166 PRO PRO H . n C 3 172 VAL 172 167 167 VAL VAL H . n C 3 173 CYS 173 168 168 CYS CYS H . n C 3 174 LYS 174 169 169 LYS LYS H . n C 3 175 ASP 175 170 170 ASP ASP H . n C 3 176 SER 176 171 171 SER SER H . n C 3 177 THR 177 172 172 THR THR H . n C 3 178 ARG 178 173 173 ARG ARG H . n C 3 179 ILE 179 174 174 ILE ILE H . n C 3 180 ARG 180 175 175 ARG ARG H . n C 3 181 ILE 181 176 176 ILE ILE H . n C 3 182 THR 182 177 177 THR THR H . n C 3 183 ASP 183 178 178 ASP ASP H . n C 3 184 ASN 184 179 179 ASN ASN H . n C 3 185 MET 185 180 180 MET MET H . n C 3 186 PHE 186 181 181 PHE PHE H . n C 3 187 CYS 187 182 182 CYS CYS H . n C 3 188 ALA 188 183 183 ALA ALA H . n C 3 189 GLY 189 184 184 GLY GLY H . n C 3 190 TYR 190 184 184 TYR TYR H A n C 3 191 LYS 191 185 185 LYS LYS H . n C 3 192 PRO 192 186 186 PRO PRO H . n C 3 193 ASP 193 186 186 ASP ASP H A n C 3 194 GLU 194 186 186 GLU GLU H B n C 3 195 GLY 195 186 186 GLY GLY H C n C 3 196 LYS 196 186 186 LYS LYS H D n C 3 197 ARG 197 187 187 ARG ARG H . n C 3 198 GLY 198 188 188 GLY GLY H . n C 3 199 ASP 199 189 189 ASP ASP H . n C 3 200 ALA 200 190 190 ALA ALA H . n C 3 201 CYS 201 191 191 CYS CYS H . n C 3 202 GLU 202 192 192 GLU GLU H . n C 3 203 GLY 203 193 193 GLY GLY H . n C 3 204 ASP 204 194 194 ASP ASP H . n C 3 205 SER 205 195 195 SER SER H . n C 3 206 GLY 206 196 196 GLY GLY H . n C 3 207 GLY 207 197 197 GLY GLY H . n C 3 208 PRO 208 198 198 PRO PRO H . n C 3 209 PHE 209 199 199 PHE PHE H . n C 3 210 VAL 210 200 200 VAL VAL H . n C 3 211 MET 211 201 201 MET MET H . n C 3 212 LYS 212 202 202 LYS LYS H . n C 3 213 SER 213 203 203 SER SER H . n C 3 214 PRO 214 204 204 PRO PRO H . n C 3 215 PHE 215 204 204 PHE PHE H A n C 3 216 ASN 216 204 204 ASN ASN H B n C 3 217 ASN 217 205 205 ASN ASN H . n C 3 218 ARG 218 206 206 ARG ARG H . n C 3 219 TRP 219 207 207 TRP TRP H . n C 3 220 TYR 220 208 208 TYR TYR H . n C 3 221 GLN 221 209 209 GLN GLN H . n C 3 222 MET 222 210 210 MET MET H . n C 3 223 GLY 223 211 211 GLY GLY H . n C 3 224 ILE 224 212 212 ILE ILE H . n C 3 225 VAL 225 213 213 VAL VAL H . n C 3 226 SER 226 214 214 SER SER H . n C 3 227 TRP 227 215 215 TRP TRP H . n C 3 228 GLY 228 216 216 GLY GLY H . n C 3 229 GLU 229 217 217 GLU GLU H . n C 3 230 GLY 230 219 219 GLY GLY H . n C 3 231 CYS 231 220 220 CYS CYS H . n C 3 232 ASP 232 221 221 ASP ASP H . n C 3 233 ARG 233 221 221 ARG ARG H A n C 3 234 ASP 234 222 222 ASP ASP H . n C 3 235 GLY 235 223 223 GLY GLY H . n C 3 236 LYS 236 224 224 LYS LYS H . n C 3 237 TYR 237 225 225 TYR TYR H . n C 3 238 GLY 238 226 226 GLY GLY H . n C 3 239 PHE 239 227 227 PHE PHE H . n C 3 240 TYR 240 228 228 TYR TYR H . n C 3 241 THR 241 229 229 THR THR H . n C 3 242 HIS 242 230 230 HIS HIS H . n C 3 243 VAL 243 231 231 VAL VAL H . n C 3 244 PHE 244 232 232 PHE PHE H . n C 3 245 ARG 245 233 233 ARG ARG H . n C 3 246 LEU 246 234 234 LEU LEU H . n C 3 247 LYS 247 235 235 LYS LYS H . n C 3 248 LYS 248 236 236 LYS LYS H . n C 3 249 TRP 249 237 237 TRP TRP H . n C 3 250 ILE 250 238 238 ILE ILE H . n C 3 251 GLN 251 239 239 GLN GLN H . n C 3 252 LYS 252 240 240 LYS LYS H . n C 3 253 VAL 253 241 241 VAL VAL H . n C 3 254 ILE 254 242 242 ILE ILE H . n C 3 255 ASP 255 243 243 ASP ASP H . n C 3 256 GLN 256 244 244 GLN GLN H . n C 3 257 PHE 257 245 245 PHE PHE H . n C 3 258 GLY 258 246 246 GLY GLY H . n C 3 259 GLU 259 247 247 GLU GLU H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 0G7 1 1 1 0G7 DPN H . E 5 HOH 1 504 504 HOH HOH D . E 5 HOH 2 512 512 HOH HOH D . E 5 HOH 3 514 514 HOH HOH D . E 5 HOH 4 526 526 HOH HOH D . E 5 HOH 5 544 544 HOH HOH D . E 5 HOH 6 574 574 HOH HOH D . E 5 HOH 7 578 578 HOH HOH D . E 5 HOH 8 583 583 HOH HOH D . E 5 HOH 9 599 599 HOH HOH D . E 5 HOH 10 602 602 HOH HOH D . E 5 HOH 11 603 603 HOH HOH D . E 5 HOH 12 615 615 HOH HOH D . E 5 HOH 13 618 618 HOH HOH D . E 5 HOH 14 621 621 HOH HOH D . E 5 HOH 15 623 623 HOH HOH D . E 5 HOH 16 624 624 HOH HOH D . E 5 HOH 17 630 630 HOH HOH D . E 5 HOH 18 632 632 HOH HOH D . E 5 HOH 19 634 634 HOH HOH D . E 5 HOH 20 637 637 HOH HOH D . E 5 HOH 21 644 644 HOH HOH D . E 5 HOH 22 645 645 HOH HOH D . E 5 HOH 23 648 648 HOH HOH D . E 5 HOH 24 652 652 HOH HOH D . E 5 HOH 25 677 677 HOH HOH D . F 5 HOH 1 501 501 HOH HOH L . F 5 HOH 2 519 519 HOH HOH L . F 5 HOH 3 521 521 HOH HOH L . F 5 HOH 4 540 540 HOH HOH L . F 5 HOH 5 543 543 HOH HOH L . F 5 HOH 6 582 582 HOH HOH L . F 5 HOH 7 597 597 HOH HOH L . F 5 HOH 8 598 598 HOH HOH L . F 5 HOH 9 640 640 HOH HOH L . F 5 HOH 10 651 651 HOH HOH L . F 5 HOH 11 666 666 HOH HOH L . F 5 HOH 12 671 671 HOH HOH L . F 5 HOH 13 678 678 HOH HOH L . F 5 HOH 14 681 681 HOH HOH L . F 5 HOH 15 686 686 HOH HOH L . G 5 HOH 1 502 502 HOH HOH H . G 5 HOH 2 503 503 HOH HOH H . G 5 HOH 3 505 505 HOH HOH H . G 5 HOH 4 506 506 HOH HOH H . G 5 HOH 5 508 508 HOH HOH H . G 5 HOH 6 509 509 HOH HOH H . G 5 HOH 7 510 510 HOH HOH H . G 5 HOH 8 511 511 HOH HOH H . G 5 HOH 9 516 516 HOH HOH H . G 5 HOH 10 517 517 HOH HOH H . G 5 HOH 11 518 518 HOH HOH H . G 5 HOH 12 523 523 HOH HOH H . G 5 HOH 13 525 525 HOH HOH H . G 5 HOH 14 528 528 HOH HOH H . G 5 HOH 15 529 529 HOH HOH H . G 5 HOH 16 531 531 HOH HOH H . G 5 HOH 17 532 532 HOH HOH H . G 5 HOH 18 533 533 HOH HOH H . G 5 HOH 19 536 536 HOH HOH H . G 5 HOH 20 538 538 HOH HOH H . G 5 HOH 21 539 539 HOH HOH H . G 5 HOH 22 541 541 HOH HOH H . G 5 HOH 23 542 542 HOH HOH H . G 5 HOH 24 553 553 HOH HOH H . G 5 HOH 25 554 554 HOH HOH H . G 5 HOH 26 555 555 HOH HOH H . G 5 HOH 27 556 556 HOH HOH H . G 5 HOH 28 558 558 HOH HOH H . G 5 HOH 29 560 560 HOH HOH H . G 5 HOH 30 561 561 HOH HOH H . G 5 HOH 31 562 562 HOH HOH H . G 5 HOH 32 563 563 HOH HOH H . G 5 HOH 33 565 565 HOH HOH H . G 5 HOH 34 566 566 HOH HOH H . G 5 HOH 35 570 570 HOH HOH H . G 5 HOH 36 573 573 HOH HOH H . G 5 HOH 37 575 575 HOH HOH H . G 5 HOH 38 579 579 HOH HOH H . G 5 HOH 39 581 581 HOH HOH H . G 5 HOH 40 586 586 HOH HOH H . G 5 HOH 41 589 589 HOH HOH H . G 5 HOH 42 592 592 HOH HOH H . G 5 HOH 43 594 594 HOH HOH H . G 5 HOH 44 595 595 HOH HOH H . G 5 HOH 45 596 596 HOH HOH H . G 5 HOH 46 600 600 HOH HOH H . G 5 HOH 47 605 605 HOH HOH H . G 5 HOH 48 611 611 HOH HOH H . G 5 HOH 49 612 612 HOH HOH H . G 5 HOH 50 613 613 HOH HOH H . G 5 HOH 51 616 616 HOH HOH H . G 5 HOH 52 617 617 HOH HOH H . G 5 HOH 53 619 619 HOH HOH H . G 5 HOH 54 620 620 HOH HOH H . G 5 HOH 55 622 622 HOH HOH H . G 5 HOH 56 625 625 HOH HOH H . G 5 HOH 57 626 626 HOH HOH H . G 5 HOH 58 627 627 HOH HOH H . G 5 HOH 59 629 629 HOH HOH H . G 5 HOH 60 631 631 HOH HOH H . G 5 HOH 61 633 633 HOH HOH H . G 5 HOH 62 635 635 HOH HOH H . G 5 HOH 63 638 638 HOH HOH H . G 5 HOH 64 639 639 HOH HOH H . G 5 HOH 65 641 641 HOH HOH H . G 5 HOH 66 643 643 HOH HOH H . G 5 HOH 67 646 646 HOH HOH H . G 5 HOH 68 650 650 HOH HOH H . G 5 HOH 69 653 653 HOH HOH H . G 5 HOH 70 654 654 HOH HOH H . G 5 HOH 71 655 655 HOH HOH H . G 5 HOH 72 656 656 HOH HOH H . G 5 HOH 73 657 657 HOH HOH H . G 5 HOH 74 658 658 HOH HOH H . G 5 HOH 75 662 662 HOH HOH H . G 5 HOH 76 663 663 HOH HOH H . G 5 HOH 77 664 664 HOH HOH H . G 5 HOH 78 665 665 HOH HOH H . G 5 HOH 79 667 667 HOH HOH H . G 5 HOH 80 668 668 HOH HOH H . G 5 HOH 81 669 669 HOH HOH H . G 5 HOH 82 670 670 HOH HOH H . G 5 HOH 83 672 672 HOH HOH H . G 5 HOH 84 673 673 HOH HOH H . G 5 HOH 85 674 674 HOH HOH H . G 5 HOH 86 676 676 HOH HOH H . G 5 HOH 87 679 679 HOH HOH H . G 5 HOH 88 680 680 HOH HOH H . G 5 HOH 89 684 684 HOH HOH H . G 5 HOH 90 685 685 HOH HOH H . # _pdbx_molecule_features.prd_id PRD_000021 _pdbx_molecule_features.name 'D-Phe-Pro-Arg chloromethylketone (PPACK)' _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000021 _pdbx_molecule.asym_id D # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-06-22 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 5 'Structure model' 1 4 2013-02-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' Other # _software.name X-PLOR _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 1HUT _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;CHYMOTRYPSIN NUMBERING SYSTEM IS USED BASED ON THE TOPOLOGICAL ALIGNMENT WITH THE STRUCTURE OF CHYMOTRYPSIN (W.BODE ET AL., 1989, EMBO J. 8, 3467-3475). THROMBIN IS CLEAVED BETWEEN RESIDUES 15 AND 16. CHAIN INDICATOR *L* IS USED FOR RESIDUES 1H - 15 AND CHAIN INDICATOR *H* IS USED FOR RESIDUES 16 - 247. CHAIN CHAIN INDICATOR *D* IS USED FOR THE OLIGONUCLEOTIDE. ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O L TYR 14 J ? N L ASP 14 L ? 1.92 2 1 NZ H LYS 36 ? ? O H ASN 62 ? ? 1.93 3 1 O H GLU 127 ? ? OG H SER 129 B ? 2.02 4 1 "O4'" D DT 407 ? ? N3 D DT 409 ? ? 2.07 5 1 NE2 H GLN 30 ? ? O H THR 139 ? ? 2.07 6 1 O6 D DG 402 ? ? N1 D DG 414 ? ? 2.12 7 1 O H THR 60 I ? CB H ASP 63 ? ? 2.16 8 1 CB H CYS 42 ? ? O H SER 195 ? ? 2.16 9 1 N7 D DG 406 ? ? N2 D DG 410 ? ? 2.17 10 1 N2 D DG 402 ? ? N7 D DG 405 ? ? 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O4'" D DG 401 ? ? "C1'" D DG 401 ? ? 1.501 1.420 0.081 0.011 N 2 1 "O4'" D DG 402 ? ? "C1'" D DG 402 ? ? 1.495 1.420 0.075 0.011 N 3 1 "O4'" D DT 404 ? ? "C4'" D DT 404 ? ? 1.523 1.449 0.074 0.009 N 4 1 P D DG 405 ? ? "O5'" D DG 405 ? ? 1.656 1.593 0.063 0.010 N 5 1 "C3'" D DT 407 ? ? "C2'" D DT 407 ? ? 1.628 1.518 0.110 0.012 N 6 1 "O4'" D DG 408 ? ? "C1'" D DG 408 ? ? 1.498 1.420 0.078 0.011 N 7 1 "O4'" D DT 413 ? ? "C1'" D DT 413 ? ? 1.499 1.420 0.079 0.011 N 8 1 C L GLY 1 F ? N L SER 1 E ? 1.509 1.336 0.173 0.023 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C5'" D DG 401 ? ? "C4'" D DG 401 ? ? "O4'" D DG 401 ? ? 122.06 109.80 12.26 1.10 N 2 1 "O5'" D DG 402 ? ? "C5'" D DG 402 ? ? "C4'" D DG 402 ? ? 98.31 109.40 -11.09 0.80 N 3 1 P D DG 402 ? ? "O5'" D DG 402 ? ? "C5'" D DG 402 ? ? 109.54 120.90 -11.36 1.60 N 4 1 "O4'" D DG 402 ? ? "C4'" D DG 402 ? ? "C3'" D DG 402 ? ? 99.93 104.50 -4.57 0.40 N 5 1 "C1'" D DG 402 ? ? "O4'" D DG 402 ? ? "C4'" D DG 402 ? ? 98.46 110.10 -11.64 1.00 N 6 1 "C4'" D DG 402 ? ? "C3'" D DG 402 ? ? "C2'" D DG 402 ? ? 97.19 102.20 -5.01 0.70 N 7 1 "C3'" D DG 402 ? ? "O3'" D DG 402 ? ? P D DT 403 ? ? 143.54 119.70 23.84 1.20 Y 8 1 OP1 D DT 403 ? ? P D DT 403 ? ? OP2 D DT 403 ? ? 94.07 119.60 -25.53 1.50 N 9 1 "O5'" D DT 403 ? ? P D DT 403 ? ? OP2 D DT 403 ? ? 117.94 110.70 7.24 1.20 N 10 1 "C4'" D DT 403 ? ? "C3'" D DT 403 ? ? "O3'" D DT 403 ? ? 129.50 112.30 17.20 2.00 N 11 1 "O4'" D DT 403 ? ? "C1'" D DT 403 ? ? N1 D DT 403 ? ? 119.02 108.30 10.72 0.30 N 12 1 C6 D DT 403 ? ? N1 D DT 403 ? ? C2 D DT 403 ? ? 117.95 121.30 -3.35 0.50 N 13 1 N1 D DT 403 ? ? C2 D DT 403 ? ? N3 D DT 403 ? ? 119.10 114.60 4.50 0.60 N 14 1 C2 D DT 403 ? ? N3 D DT 403 ? ? C4 D DT 403 ? ? 121.88 127.20 -5.32 0.60 N 15 1 N3 D DT 403 ? ? C4 D DT 403 ? ? C5 D DT 403 ? ? 118.98 115.20 3.78 0.60 N 16 1 "C3'" D DT 403 ? ? "O3'" D DT 403 ? ? P D DT 404 ? ? 112.02 119.70 -7.68 1.20 Y 17 1 "O3'" D DT 403 ? ? P D DT 404 ? ? "O5'" D DT 404 ? ? 123.01 104.00 19.01 1.90 Y 18 1 "O5'" D DT 404 ? ? P D DT 404 ? ? OP1 D DT 404 ? ? 123.56 110.70 12.86 1.20 N 19 1 "O5'" D DT 404 ? ? P D DT 404 ? ? OP2 D DT 404 ? ? 98.18 105.70 -7.52 0.90 N 20 1 P D DT 404 ? ? "O5'" D DT 404 ? ? "C5'" D DT 404 ? ? 141.97 120.90 21.07 1.60 N 21 1 "O4'" D DT 404 ? ? "C4'" D DT 404 ? ? "C3'" D DT 404 ? ? 95.13 104.50 -9.37 0.40 N 22 1 "C5'" D DT 404 ? ? "C4'" D DT 404 ? ? "C3'" D DT 404 ? ? 132.33 115.70 16.63 1.20 N 23 1 "C1'" D DT 404 ? ? "O4'" D DT 404 ? ? "C4'" D DT 404 ? ? 95.53 110.10 -14.57 1.00 N 24 1 "C4'" D DT 404 ? ? "C3'" D DT 404 ? ? "O3'" D DT 404 ? ? 129.56 112.30 17.26 2.00 N 25 1 "C4'" D DT 404 ? ? "C3'" D DT 404 ? ? "C2'" D DT 404 ? ? 97.76 102.20 -4.44 0.70 N 26 1 "O4'" D DT 404 ? ? "C1'" D DT 404 ? ? N1 D DT 404 ? ? 124.05 108.30 15.75 0.30 N 27 1 C6 D DT 404 ? ? N1 D DT 404 ? ? C2 D DT 404 ? ? 117.37 121.30 -3.93 0.50 N 28 1 N1 D DT 404 ? ? C2 D DT 404 ? ? N3 D DT 404 ? ? 119.04 114.60 4.44 0.60 N 29 1 C2 D DT 404 ? ? N3 D DT 404 ? ? C4 D DT 404 ? ? 121.78 127.20 -5.42 0.60 N 30 1 N3 D DT 404 ? ? C4 D DT 404 ? ? C5 D DT 404 ? ? 119.74 115.20 4.54 0.60 N 31 1 N3 D DT 404 ? ? C2 D DT 404 ? ? O2 D DT 404 ? ? 118.54 122.30 -3.76 0.60 N 32 1 "C3'" D DT 404 ? ? "O3'" D DT 404 ? ? P D DG 405 ? ? 141.87 119.70 22.17 1.20 Y 33 1 "O3'" D DT 404 ? ? P D DG 405 ? ? OP2 D DG 405 ? ? 118.68 110.50 8.18 1.10 Y 34 1 "O5'" D DG 405 ? ? P D DG 405 ? ? OP1 D DG 405 ? ? 98.26 105.70 -7.44 0.90 N 35 1 "C5'" D DG 405 ? ? "C4'" D DG 405 ? ? "C3'" D DG 405 ? ? 123.97 115.70 8.27 1.20 N 36 1 "O4'" D DG 405 ? ? "C1'" D DG 405 ? ? N9 D DG 405 ? ? 112.16 108.30 3.86 0.30 N 37 1 "C3'" D DG 405 ? ? "O3'" D DG 405 ? ? P D DG 406 ? ? 142.71 119.70 23.01 1.20 Y 38 1 OP1 D DG 406 ? ? P D DG 406 ? ? OP2 D DG 406 ? ? 106.47 119.60 -13.13 1.50 N 39 1 P D DG 406 ? ? "O5'" D DG 406 ? ? "C5'" D DG 406 ? ? 138.32 120.90 17.42 1.60 N 40 1 N9 D DG 406 ? ? "C1'" D DG 406 ? ? "C2'" D DG 406 ? ? 100.52 112.60 -12.08 1.90 N 41 1 "O4'" D DG 406 ? ? "C1'" D DG 406 ? ? N9 D DG 406 ? ? 131.56 108.30 23.26 0.30 N 42 1 N1 D DG 406 ? ? C6 D DG 406 ? ? O6 D DG 406 ? ? 115.23 119.90 -4.67 0.60 N 43 1 "O5'" D DT 407 ? ? P D DT 407 ? ? OP1 D DT 407 ? ? 119.68 110.70 8.98 1.20 N 44 1 "O5'" D DT 407 ? ? "C5'" D DT 407 ? ? "C4'" D DT 407 ? ? 101.70 109.40 -7.70 0.80 N 45 1 "C5'" D DT 407 ? ? "C4'" D DT 407 ? ? "C3'" D DT 407 ? ? 124.52 115.70 8.82 1.20 N 46 1 "C1'" D DT 407 ? ? "O4'" D DT 407 ? ? "C4'" D DT 407 ? ? 100.14 110.10 -9.96 1.00 N 47 1 "C4'" D DT 407 ? ? "C3'" D DT 407 ? ? "O3'" D DT 407 ? ? 126.85 112.30 14.55 2.00 N 48 1 "C4'" D DT 407 ? ? "C3'" D DT 407 ? ? "C2'" D DT 407 ? ? 92.02 102.20 -10.18 0.70 N 49 1 "C3'" D DT 407 ? ? "C2'" D DT 407 ? ? "C1'" D DT 407 ? ? 87.52 102.40 -14.88 0.80 N 50 1 N1 D DT 407 ? ? "C1'" D DT 407 ? ? "C2'" D DT 407 ? ? 97.44 112.60 -15.16 1.90 N 51 1 "O4'" D DT 407 ? ? "C1'" D DT 407 ? ? N1 D DT 407 ? ? 95.10 108.00 -12.90 0.70 N 52 1 C6 D DT 407 ? ? N1 D DT 407 ? ? C2 D DT 407 ? ? 124.95 121.30 3.65 0.50 N 53 1 C2 D DT 407 ? ? N3 D DT 407 ? ? C4 D DT 407 ? ? 122.72 127.20 -4.48 0.60 N 54 1 N3 D DT 407 ? ? C4 D DT 407 ? ? C5 D DT 407 ? ? 120.39 115.20 5.19 0.60 N 55 1 N3 D DT 407 ? ? C4 D DT 407 ? ? O4 D DT 407 ? ? 116.10 119.90 -3.80 0.60 N 56 1 "O5'" D DG 408 ? ? P D DG 408 ? ? OP1 D DG 408 ? ? 118.35 110.70 7.65 1.20 N 57 1 "C1'" D DG 408 ? ? "O4'" D DG 408 ? ? "C4'" D DG 408 ? ? 102.90 110.10 -7.20 1.00 N 58 1 "C3'" D DG 408 ? ? "O3'" D DG 408 ? ? P D DT 409 ? ? 131.69 119.70 11.99 1.20 Y 59 1 OP1 D DT 409 ? ? P D DT 409 ? ? OP2 D DT 409 ? ? 106.35 119.60 -13.25 1.50 N 60 1 "O5'" D DT 409 ? ? P D DT 409 ? ? OP2 D DT 409 ? ? 121.06 110.70 10.36 1.20 N 61 1 "O4'" D DT 409 ? ? "C1'" D DT 409 ? ? N1 D DT 409 ? ? 110.57 108.30 2.27 0.30 N 62 1 N1 D DT 409 ? ? C2 D DT 409 ? ? N3 D DT 409 ? ? 119.50 114.60 4.90 0.60 N 63 1 C2 D DT 409 ? ? N3 D DT 409 ? ? C4 D DT 409 ? ? 121.53 127.20 -5.67 0.60 N 64 1 "C3'" D DT 409 ? ? "O3'" D DT 409 ? ? P D DG 410 ? ? 132.17 119.70 12.47 1.20 Y 65 1 OP1 D DG 410 ? ? P D DG 410 ? ? OP2 D DG 410 ? ? 107.31 119.60 -12.29 1.50 N 66 1 "O4'" D DG 410 ? ? "C4'" D DG 410 ? ? "C3'" D DG 410 ? ? 95.07 104.50 -9.43 0.40 N 67 1 "C1'" D DG 410 ? ? "O4'" D DG 410 ? ? "C4'" D DG 410 ? ? 94.99 110.10 -15.11 1.00 N 68 1 "O4'" D DG 410 ? ? "C1'" D DG 410 ? ? N9 D DG 410 ? ? 122.11 108.30 13.81 0.30 N 69 1 C8 D DG 410 ? ? N9 D DG 410 ? ? C4 D DG 410 ? ? 103.58 106.40 -2.82 0.40 N 70 1 N9 D DG 410 ? ? C4 D DG 410 ? ? C5 D DG 410 ? ? 107.92 105.40 2.52 0.40 N 71 1 N1 D DG 410 ? ? C6 D DG 410 ? ? O6 D DG 410 ? ? 116.22 119.90 -3.68 0.60 N 72 1 "O4'" D DG 411 ? ? "C1'" D DG 411 ? ? "C2'" D DG 411 ? ? 97.66 105.90 -8.24 0.80 N 73 1 "O4'" D DG 411 ? ? "C1'" D DG 411 ? ? N9 D DG 411 ? ? 122.64 108.30 14.34 0.30 N 74 1 "C3'" D DG 411 ? ? "O3'" D DG 411 ? ? P D DT 412 ? ? 135.33 119.70 15.63 1.20 Y 75 1 OP1 D DT 412 ? ? P D DT 412 ? ? OP2 D DT 412 ? ? 105.51 119.60 -14.09 1.50 N 76 1 "O5'" D DT 412 ? ? P D DT 412 ? ? OP1 D DT 412 ? ? 119.38 110.70 8.68 1.20 N 77 1 P D DT 412 ? ? "O5'" D DT 412 ? ? "C5'" D DT 412 ? ? 139.87 120.90 18.97 1.60 N 78 1 "O4'" D DT 412 ? ? "C1'" D DT 412 ? ? N1 D DT 412 ? ? 126.31 108.30 18.01 0.30 N 79 1 C2 D DT 412 ? ? N3 D DT 412 ? ? C4 D DT 412 ? ? 122.43 127.20 -4.77 0.60 N 80 1 N3 D DT 412 ? ? C4 D DT 412 ? ? C5 D DT 412 ? ? 119.62 115.20 4.42 0.60 N 81 1 "C3'" D DT 412 ? ? "O3'" D DT 412 ? ? P D DT 413 ? ? 149.12 119.70 29.42 1.20 Y 82 1 OP1 D DT 413 ? ? P D DT 413 ? ? OP2 D DT 413 ? ? 104.93 119.60 -14.67 1.50 N 83 1 P D DT 413 ? ? "O5'" D DT 413 ? ? "C5'" D DT 413 ? ? 138.04 120.90 17.14 1.60 N 84 1 "O4'" D DT 413 ? ? "C4'" D DT 413 ? ? "C3'" D DT 413 ? ? 101.60 104.50 -2.90 0.40 N 85 1 "O4'" D DT 413 ? ? "C1'" D DT 413 ? ? "C2'" D DT 413 ? ? 98.90 105.90 -7.00 0.80 N 86 1 "O4'" D DT 413 ? ? "C1'" D DT 413 ? ? N1 D DT 413 ? ? 116.90 108.30 8.60 0.30 N 87 1 C6 D DT 413 ? ? N1 D DT 413 ? ? C2 D DT 413 ? ? 118.17 121.30 -3.13 0.50 N 88 1 N1 D DT 413 ? ? C2 D DT 413 ? ? N3 D DT 413 ? ? 119.38 114.60 4.78 0.60 N 89 1 C2 D DT 413 ? ? N3 D DT 413 ? ? C4 D DT 413 ? ? 121.78 127.20 -5.42 0.60 N 90 1 N3 D DT 413 ? ? C4 D DT 413 ? ? C5 D DT 413 ? ? 118.91 115.20 3.71 0.60 N 91 1 N3 D DT 413 ? ? C4 D DT 413 ? ? O4 D DT 413 ? ? 113.14 119.90 -6.76 0.60 N 92 1 OP1 D DG 414 ? ? P D DG 414 ? ? OP2 D DG 414 ? ? 107.39 119.60 -12.21 1.50 N 93 1 C6 D DG 414 ? ? N1 D DG 414 ? ? C2 D DG 414 ? ? 121.10 125.10 -4.00 0.60 N 94 1 C5 D DG 414 ? ? C6 D DG 414 ? ? N1 D DG 414 ? ? 115.83 111.50 4.33 0.50 N 95 1 "O4'" D DG 415 ? ? "C1'" D DG 415 ? ? N9 D DG 415 ? ? 113.64 108.30 5.34 0.30 N 96 1 N1 D DG 415 ? ? C6 D DG 415 ? ? O6 D DG 415 ? ? 116.14 119.90 -3.76 0.60 N 97 1 CD L ARG 4 ? ? NE L ARG 4 ? ? CZ L ARG 4 ? ? 112.69 123.60 -10.91 1.40 N 98 1 NE L ARG 4 ? ? CZ L ARG 4 ? ? NH1 L ARG 4 ? ? 114.71 120.30 -5.59 0.50 N 99 1 NE L ARG 4 ? ? CZ L ARG 4 ? ? NH2 L ARG 4 ? ? 125.52 120.30 5.22 0.50 N 100 1 C L LYS 10 ? ? N L SER 11 ? ? CA L SER 11 ? ? 145.85 121.70 24.15 2.50 Y 101 1 CB L ASP 14 ? ? CG L ASP 14 ? ? OD1 L ASP 14 ? ? 112.13 118.30 -6.17 0.90 N 102 1 CA L ASP 14 ? ? C L ASP 14 ? ? N L LYS 14 A ? 103.59 117.20 -13.61 2.20 Y 103 1 O L GLU 14 C ? C L GLU 14 C ? N L ARG 14 D ? 133.19 122.70 10.49 1.60 Y 104 1 NH1 L ARG 14 D ? CZ L ARG 14 D ? NH2 L ARG 14 D ? 111.17 119.40 -8.23 1.10 N 105 1 NE L ARG 14 D ? CZ L ARG 14 D ? NH1 L ARG 14 D ? 124.11 120.30 3.81 0.50 N 106 1 NE L ARG 14 D ? CZ L ARG 14 D ? NH2 L ARG 14 D ? 124.58 120.30 4.28 0.50 N 107 1 CA L TYR 14 J ? C L TYR 14 J ? O L TYR 14 J ? 106.56 120.10 -13.54 2.10 N 108 1 O H GLN 30 ? ? C H GLN 30 ? ? N H VAL 31 ? ? 134.56 122.70 11.86 1.60 Y 109 1 O H LYS 36 ? ? C H LYS 36 ? ? N H SER 36 A ? 112.65 122.70 -10.05 1.60 Y 110 1 CB H SER 36 A ? CA H SER 36 A ? C H SER 36 A ? 97.90 110.10 -12.20 1.90 N 111 1 OE1 H GLU 39 ? ? CD H GLU 39 ? ? OE2 H GLU 39 ? ? 132.09 123.30 8.79 1.20 N 112 1 CD H ARG 50 ? ? NE H ARG 50 ? ? CZ H ARG 50 ? ? 113.72 123.60 -9.88 1.40 N 113 1 NE H ARG 50 ? ? CZ H ARG 50 ? ? NH1 H ARG 50 ? ? 116.26 120.30 -4.04 0.50 N 114 1 CA H TRP 60 D ? CB H TRP 60 D ? CG H TRP 60 D ? 125.49 113.70 11.79 1.90 N 115 1 CB H ASP 60 E ? CG H ASP 60 E ? OD2 H ASP 60 E ? 110.30 118.30 -8.00 0.90 N 116 1 N H LYS 60 F ? CA H LYS 60 F ? CB H LYS 60 F ? 122.53 110.60 11.93 1.80 N 117 1 O H LYS 60 F ? C H LYS 60 F ? N H ASN 60 G ? 133.04 122.70 10.34 1.60 Y 118 1 NE H ARG 67 ? ? CZ H ARG 67 ? ? NH1 H ARG 67 ? ? 123.85 120.30 3.55 0.50 N 119 1 NE H ARG 67 ? ? CZ H ARG 67 ? ? NH2 H ARG 67 ? ? 117.15 120.30 -3.15 0.50 N 120 1 NE H ARG 73 ? ? CZ H ARG 73 ? ? NH1 H ARG 73 ? ? 123.83 120.30 3.53 0.50 N 121 1 CD H ARG 75 ? ? NE H ARG 75 ? ? CZ H ARG 75 ? ? 132.60 123.60 9.00 1.40 N 122 1 NE H ARG 75 ? ? CZ H ARG 75 ? ? NH1 H ARG 75 ? ? 125.70 120.30 5.40 0.50 N 123 1 NE H ARG 77 A ? CZ H ARG 77 A ? NH2 H ARG 77 A ? 124.24 120.30 3.94 0.50 N 124 1 CA H GLU 86 ? ? CB H GLU 86 ? ? CG H GLU 86 ? ? 132.85 113.40 19.45 2.20 N 125 1 CA H TYR 89 ? ? CB H TYR 89 ? ? CG H TYR 89 ? ? 125.32 113.40 11.92 1.90 N 126 1 CA H TRP 96 ? ? CB H TRP 96 ? ? CG H TRP 96 ? ? 129.92 113.70 16.22 1.90 N 127 1 CD H ARG 97 ? ? NE H ARG 97 ? ? CZ H ARG 97 ? ? 133.22 123.60 9.62 1.40 N 128 1 NH1 H ARG 97 ? ? CZ H ARG 97 ? ? NH2 H ARG 97 ? ? 112.39 119.40 -7.01 1.10 N 129 1 NE H ARG 97 ? ? CZ H ARG 97 ? ? NH1 H ARG 97 ? ? 125.57 120.30 5.27 0.50 N 130 1 OE1 H GLU 97 A ? CD H GLU 97 A ? OE2 H GLU 97 A ? 115.41 123.30 -7.89 1.20 N 131 1 CD H ARG 101 ? ? NE H ARG 101 ? ? CZ H ARG 101 ? ? 134.72 123.60 11.12 1.40 N 132 1 NH1 H ARG 101 ? ? CZ H ARG 101 ? ? NH2 H ARG 101 ? ? 109.55 119.40 -9.85 1.10 N 133 1 NE H ARG 101 ? ? CZ H ARG 101 ? ? NH1 H ARG 101 ? ? 134.99 120.30 14.69 0.50 N 134 1 NE H ARG 101 ? ? CZ H ARG 101 ? ? NH2 H ARG 101 ? ? 115.30 120.30 -5.00 0.50 N 135 1 CB H ASP 102 ? ? CG H ASP 102 ? ? OD1 H ASP 102 ? ? 123.73 118.30 5.43 0.90 N 136 1 O H LEU 105 ? ? C H LEU 105 ? ? N H MET 106 ? ? 112.04 122.70 -10.66 1.60 Y 137 1 O H ASP 116 ? ? C H ASP 116 ? ? N H TYR 117 ? ? 110.92 122.70 -11.78 1.60 Y 138 1 CB H LEU 123 ? ? CA H LEU 123 ? ? C H LEU 123 ? ? 122.84 110.20 12.64 1.90 N 139 1 CB H ASP 125 ? ? CG H ASP 125 ? ? OD1 H ASP 125 ? ? 124.42 118.30 6.12 0.90 N 140 1 NE H ARG 126 ? ? CZ H ARG 126 ? ? NH1 H ARG 126 ? ? 124.19 120.30 3.89 0.50 N 141 1 NE H ARG 126 ? ? CZ H ARG 126 ? ? NH2 H ARG 126 ? ? 113.39 120.30 -6.91 0.50 N 142 1 OE1 H GLU 127 ? ? CD H GLU 127 ? ? OE2 H GLU 127 ? ? 132.74 123.30 9.44 1.20 N 143 1 C H ALA 129 A ? N H SER 129 B ? CA H SER 129 B ? 136.95 121.70 15.25 2.50 Y 144 1 N H SER 129 B ? CA H SER 129 B ? CB H SER 129 B ? 97.02 110.50 -13.48 1.50 N 145 1 C H LYS 135 ? ? N H GLY 136 ? ? CA H GLY 136 ? ? 140.11 122.30 17.81 2.10 Y 146 1 CD H ARG 137 ? ? NE H ARG 137 ? ? CZ H ARG 137 ? ? 132.20 123.60 8.60 1.40 N 147 1 NE H ARG 137 ? ? CZ H ARG 137 ? ? NH1 H ARG 137 ? ? 125.45 120.30 5.15 0.50 N 148 1 CB H CYS 168 ? ? CA H CYS 168 ? ? C H CYS 168 ? ? 118.99 111.50 7.49 1.20 N 149 1 NE H ARG 175 ? ? CZ H ARG 175 ? ? NH1 H ARG 175 ? ? 123.38 120.30 3.08 0.50 N 150 1 CB H LYS 185 ? ? CA H LYS 185 ? ? C H LYS 185 ? ? 122.83 110.40 12.43 2.00 N 151 1 NE H ARG 187 ? ? CZ H ARG 187 ? ? NH2 H ARG 187 ? ? 124.01 120.30 3.71 0.50 N 152 1 C H GLY 196 ? ? N H GLY 197 ? ? CA H GLY 197 ? ? 140.39 122.30 18.09 2.10 Y 153 1 NE H ARG 206 ? ? CZ H ARG 206 ? ? NH2 H ARG 206 ? ? 123.41 120.30 3.11 0.50 N 154 1 NE H ARG 221 A ? CZ H ARG 221 A ? NH2 H ARG 221 A ? 123.78 120.30 3.48 0.50 N 155 1 CB H TYR 225 ? ? CA H TYR 225 ? ? C H TYR 225 ? ? 122.75 110.40 12.35 2.00 N 156 1 NE H ARG 233 ? ? CZ H ARG 233 ? ? NH1 H ARG 233 ? ? 124.59 120.30 4.29 0.50 N 157 1 CB H ASP 243 ? ? CG H ASP 243 ? ? OD1 H ASP 243 ? ? 111.57 118.30 -6.73 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE L 1 G ? -41.87 -158.66 2 1 SER L 1 E ? 44.30 22.08 3 1 ALA L 1 B ? 178.61 -39.33 4 1 PHE L 7 ? ? -125.73 -73.41 5 1 LYS L 9 ? ? -47.61 -7.69 6 1 SER L 11 ? ? 38.08 38.84 7 1 LYS L 14 A ? -29.97 -65.61 8 1 ARG L 14 D ? -54.70 -7.81 9 1 LEU L 14 G ? -51.70 2.97 10 1 TYR L 14 J ? -66.98 90.08 11 1 ILE L 14 K ? -33.82 87.75 12 1 ASP L 14 L ? 70.14 98.53 13 1 GLU H 18 ? ? 36.64 68.73 14 1 SER H 20 ? ? -171.73 103.64 15 1 ASP H 21 ? ? -26.00 111.78 16 1 ARG H 50 ? ? -169.01 11.53 17 1 THR H 54 ? ? -118.37 -168.71 18 1 LEU H 59 ? ? -142.41 -10.37 19 1 ASN H 60 G ? -160.22 83.48 20 1 GLU H 61 ? ? -25.38 -69.69 21 1 HIS H 71 ? ? -142.36 -53.10 22 1 ARG H 77 A ? -26.70 -56.25 23 1 ILE H 79 ? ? -91.52 -64.17 24 1 ASN H 98 ? ? -160.13 60.57 25 1 LEU H 99 ? ? 36.57 46.03 26 1 ALA H 104 ? ? -176.60 137.11 27 1 PHE H 114 ? ? -108.82 43.66 28 1 ASP H 116 ? ? 25.22 9.88 29 1 TYR H 117 ? ? -164.59 -0.80 30 1 PRO H 124 ? ? -45.55 162.19 31 1 GLU H 127 ? ? -54.75 -70.85 32 1 LEU H 130 ? ? -69.21 42.68 33 1 ASN H 143 ? ? -36.94 146.07 34 1 PRO H 166 ? ? -60.95 1.62 35 1 CYS H 168 ? ? -67.89 8.50 36 1 LYS H 169 ? ? -101.70 -68.64 37 1 ASP H 170 ? ? -76.65 23.74 38 1 ILE H 174 ? ? -43.66 153.33 39 1 ASP H 178 ? ? -72.60 21.32 40 1 ASP H 186 A ? -94.69 54.14 41 1 GLU H 186 B ? -160.11 61.34 42 1 SER H 195 ? ? -31.38 143.13 43 1 TRP H 215 ? ? -168.08 -161.71 44 1 GLU H 217 ? ? -102.18 66.00 45 1 CYS H 220 ? ? -29.61 120.93 46 1 ASP H 222 ? ? -68.94 99.27 47 1 HIS H 230 ? ? -56.52 80.40 48 1 ARG H 233 ? ? -50.25 9.63 49 1 LEU H 234 ? ? -144.83 -1.30 50 1 ILE H 238 ? ? -67.82 -79.41 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 ILE L 14 K ? 12.21 2 1 LYS H 36 ? ? -13.01 3 1 ASP H 63 ? ? 13.49 4 1 LEU H 64 ? ? 10.76 5 1 LYS H 81 ? ? 10.54 6 1 SER H 153 ? ? 10.77 7 1 VAL H 200 ? ? 17.40 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag N _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id H _pdbx_unobs_or_zero_occ_atoms.auth_comp_id 0G7 _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id CL1 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id D _pdbx_unobs_or_zero_occ_atoms.label_comp_id 0G7 _pdbx_unobs_or_zero_occ_atoms.label_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.label_atom_id CL1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 H THR 148 A C THR 149 2 1 Y 1 H ALA 148 B C ALA 150 3 1 Y 1 H ASN 148 C C ASN 151 4 1 Y 1 H VAL 148 D C VAL 152 5 1 Y 1 H GLY 148 E C GLY 153 6 1 Y 1 H LYS 148 F C LYS 154 # _ndb_struct_conf_na.entry_id 1HUT _ndb_struct_conf_na.feature 'quadruple helix' # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'D-phenylalanyl-N-[(3S)-6-carbamimidamido-1-chloro-2-oxohexan-3-yl]-L-prolinamide' 0G7 5 water HOH #