data_1I0O # _entry.id 1I0O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1I0O pdb_00001i0o 10.2210/pdb1i0o/pdb NDB AD0017 ? ? RCSB RCSB012759 ? ? WWPDB D_1000012759 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-04-04 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2022-06-22 5 'Structure model' 2 1 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Polymer sequence' 7 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' database_2 3 4 'Structure model' entity_poly 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' pdbx_struct_mod_residue 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site 8 5 'Structure model' chem_comp_atom 9 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.mon_nstd_flag' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 24 4 'Structure model' '_pdbx_struct_conn_angle.value' 25 4 'Structure model' '_struct_conn.conn_type_id' 26 4 'Structure model' '_struct_conn.id' 27 4 'Structure model' '_struct_conn.pdbx_dist_value' 28 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 29 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 36 4 'Structure model' '_struct_conn.ptnr1_symmetry' 37 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 38 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 39 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 40 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 41 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 42 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 43 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 44 4 'Structure model' '_struct_conn.ptnr2_symmetry' 45 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 46 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 47 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1I0O _pdbx_database_status.recvd_initial_deposition_date 2001-01-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry N _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tereshko, V.' 1 'Wilds, C.J.' 2 'Minasov, G.' 3 'Prakash, T.P.' 4 'Maier, M.A.' 5 'Howard, A.' 6 'Wawrzak, Z.' 7 'Manoharan, M.' 8 'Egli, M.' 9 # _citation.id primary _citation.title 'Detection of alkali metal ions in DNA crystals using state-of-the-art X-ray diffraction experiments' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 29 _citation.page_first 1208 _citation.page_last 1215 _citation.year 2001 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11222771 _citation.pdbx_database_id_DOI 10.1093/nar/29.5.1208 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tereshko, V.' 1 ? primary 'Wilds, C.J.' 2 ? primary 'Minasov, G.' 3 ? primary 'Prakash, T.P.' 4 ? primary 'Maier, M.A.' 5 ? primary 'Howard, A.' 6 ? primary 'Wawrzak, Z.' 7 ? primary 'Manoharan, M.' 8 ? primary 'Egli, M.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*CP*GP*TP*AP*(T23)P*AP*CP*GP*C)-3'" 3073.059 2 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 3 ? ? ? ? 3 water nat water 18.015 93 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DG)(DT)(DA)(T23)(DA)(DC)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCGTAXACGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 DT n 1 5 DA n 1 6 T23 n 1 7 DA n 1 8 DC n 1 9 DG n 1 10 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 T23 non-polymer . "2'-O-METHYL-3'-METHYL-3'-DEOXY-ARABINOFURANOSYL-THYMINE-5'-PHOSPHATE" ? 'C12 H19 N2 O8 P' 350.262 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 T23 6 6 6 T23 MEP A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DC 10 10 10 DC C A . n B 1 1 DG 1 11 11 DG G B . n B 1 2 DC 2 12 12 DC C B . n B 1 3 DG 3 13 13 DG G B . n B 1 4 DT 4 14 14 DT T B . n B 1 5 DA 5 15 15 DA A B . n B 1 6 T23 6 16 16 T23 MEP B . n B 1 7 DA 7 17 17 DA A B . n B 1 8 DC 8 18 18 DC C B . n B 1 9 DG 9 19 19 DG G B . n B 1 10 DC 10 20 20 DC C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K 1 21 21 K K A . D 2 K 1 22 22 K K A . E 2 K 1 23 23 K K B . F 3 HOH 1 101 101 HOH HOH A . F 3 HOH 2 102 102 HOH HOH A . F 3 HOH 3 104 104 HOH HOH A . F 3 HOH 4 109 109 HOH HOH A . F 3 HOH 5 110 110 HOH HOH A . F 3 HOH 6 111 111 HOH HOH A . F 3 HOH 7 114 114 HOH HOH A . F 3 HOH 8 115 115 HOH HOH A . F 3 HOH 9 118 118 HOH HOH A . F 3 HOH 10 119 119 HOH HOH A . F 3 HOH 11 120 120 HOH HOH A . F 3 HOH 12 121 121 HOH HOH A . F 3 HOH 13 123 123 HOH HOH A . F 3 HOH 14 124 124 HOH HOH A . F 3 HOH 15 126 126 HOH HOH A . F 3 HOH 16 127 127 HOH HOH A . F 3 HOH 17 129 129 HOH HOH A . F 3 HOH 18 133 133 HOH HOH A . F 3 HOH 19 141 141 HOH HOH A . F 3 HOH 20 145 145 HOH HOH A . F 3 HOH 21 146 146 HOH HOH A . F 3 HOH 22 147 147 HOH HOH A . F 3 HOH 23 148 148 HOH HOH A . F 3 HOH 24 149 149 HOH HOH A . F 3 HOH 25 151 151 HOH HOH A . F 3 HOH 26 152 152 HOH HOH A . F 3 HOH 27 153 153 HOH HOH A . F 3 HOH 28 154 154 HOH HOH A . F 3 HOH 29 155 155 HOH HOH A . F 3 HOH 30 156 156 HOH HOH A . F 3 HOH 31 157 157 HOH HOH A . F 3 HOH 32 160 160 HOH HOH A . F 3 HOH 33 161 161 HOH HOH A . F 3 HOH 34 162 162 HOH HOH A . F 3 HOH 35 165 165 HOH HOH A . F 3 HOH 36 166 166 HOH HOH A . F 3 HOH 37 168 168 HOH HOH A . F 3 HOH 38 170 170 HOH HOH A . F 3 HOH 39 173 173 HOH HOH A . F 3 HOH 40 174 174 HOH HOH A . F 3 HOH 41 175 175 HOH HOH A . F 3 HOH 42 177 177 HOH HOH A . F 3 HOH 43 178 178 HOH HOH A . F 3 HOH 44 179 179 HOH HOH A . F 3 HOH 45 180 180 HOH HOH A . F 3 HOH 46 186 186 HOH HOH A . F 3 HOH 47 190 190 HOH HOH A . F 3 HOH 48 194 194 HOH HOH A . F 3 HOH 49 195 195 HOH HOH A . G 3 HOH 1 24 24 HOH HOH B . G 3 HOH 2 103 103 HOH HOH B . G 3 HOH 3 105 105 HOH HOH B . G 3 HOH 4 106 106 HOH HOH B . G 3 HOH 5 107 107 HOH HOH B . G 3 HOH 6 108 108 HOH HOH B . G 3 HOH 7 112 112 HOH HOH B . G 3 HOH 8 117 117 HOH HOH B . G 3 HOH 9 122 122 HOH HOH B . G 3 HOH 10 125 125 HOH HOH B . G 3 HOH 11 128 128 HOH HOH B . G 3 HOH 12 130 130 HOH HOH B . G 3 HOH 13 131 131 HOH HOH B . G 3 HOH 14 132 132 HOH HOH B . G 3 HOH 15 134 134 HOH HOH B . G 3 HOH 16 136 136 HOH HOH B . G 3 HOH 17 137 137 HOH HOH B . G 3 HOH 18 138 138 HOH HOH B . G 3 HOH 19 139 139 HOH HOH B . G 3 HOH 20 140 140 HOH HOH B . G 3 HOH 21 142 142 HOH HOH B . G 3 HOH 22 143 143 HOH HOH B . G 3 HOH 23 144 144 HOH HOH B . G 3 HOH 24 150 150 HOH HOH B . G 3 HOH 25 158 158 HOH HOH B . G 3 HOH 26 159 159 HOH HOH B . G 3 HOH 27 163 163 HOH HOH B . G 3 HOH 28 164 164 HOH HOH B . G 3 HOH 29 167 167 HOH HOH B . G 3 HOH 30 169 169 HOH HOH B . G 3 HOH 31 171 171 HOH HOH B . G 3 HOH 32 172 172 HOH HOH B . G 3 HOH 33 176 176 HOH HOH B . G 3 HOH 34 181 181 HOH HOH B . G 3 HOH 35 182 182 HOH HOH B . G 3 HOH 36 183 183 HOH HOH B . G 3 HOH 37 184 184 HOH HOH B . G 3 HOH 38 185 185 HOH HOH B . G 3 HOH 39 187 187 HOH HOH B . G 3 HOH 40 188 188 HOH HOH B . G 3 HOH 41 189 189 HOH HOH B . G 3 HOH 42 191 191 HOH HOH B . G 3 HOH 43 192 192 HOH HOH B . G 3 HOH 44 193 193 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 CNS phasing . ? 4 # _cell.entry_id 1I0O _cell.length_a 24.65 _cell.length_b 44.61 _cell.length_c 44.16 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1I0O _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1I0O _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.90 _exptl_crystal.density_percent_sol 35.13 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'K salt, pH 6.0, VAPOR DIFFUSION, HANGING DROP at 298 K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1999-11-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.6513 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 17-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 17-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.6513 # _reflns.entry_id 1I0O _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.0 _reflns.number_obs 3476 _reflns.number_all 3476 _reflns.percent_possible_obs 99 _reflns.pdbx_Rmerge_I_obs 0.074 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1I0O _refine.ls_number_reflns_obs 3476 _refine.ls_number_reflns_all 3476 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 20 _refine.ls_d_res_high 2.0 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.202 _refine.ls_R_factor_R_free 0.246 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 408 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 93 _refine_hist.number_atoms_total 504 _refine_hist.d_res_high 2.0 _refine_hist.d_res_low 20 # _database_PDB_matrix.entry_id 1I0O _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1I0O _struct.title ;1.6 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-3'-METHYLENEPHOSPHONATE THYMINE IN PLACE OF T6, HIGH K-SALT ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1I0O _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'A-form double helix, modified sugar, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1I0O _struct_ref.pdbx_db_accession 1I0O _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1I0O A 1 ? 10 ? 1I0O 1 ? 10 ? 1 10 2 1 1I0O B 1 ? 10 ? 1I0O 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DA 5 "O3'" ? ? ? 1_555 A T23 6 P ? ? A DA 5 A T23 6 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale2 covale one ? A T23 6 C3M ? ? ? 1_555 A DA 7 P ? ? A T23 6 A DA 7 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale3 covale both ? B DA 5 "O3'" ? ? ? 1_555 B T23 6 P ? ? B DA 15 B T23 16 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale4 covale one ? B T23 6 C3M ? ? ? 1_555 B DA 7 P ? ? B T23 16 B DA 17 1_555 ? ? ? ? ? ? ? 1.617 ? ? metalc1 metalc ? ? A DG 3 N7 ? ? ? 1_555 D K . K ? ? A DG 3 A K 22 1_555 ? ? ? ? ? ? ? 3.640 ? ? metalc2 metalc ? ? A DG 3 O6 ? ? ? 1_555 D K . K ? ? A DG 3 A K 22 1_555 ? ? ? ? ? ? ? 3.334 ? ? metalc3 metalc ? ? A DT 4 O4 ? ? ? 1_555 D K . K ? ? A DT 4 A K 22 1_555 ? ? ? ? ? ? ? 2.776 ? ? metalc4 metalc ? ? A DA 5 N6 ? ? ? 1_555 D K . K ? ? A DA 5 A K 22 1_555 ? ? ? ? ? ? ? 3.669 ? ? metalc5 metalc ? ? A DG 9 "O3'" ? ? ? 1_555 C K . K ? ? A DG 9 A K 21 1_555 ? ? ? ? ? ? ? 2.832 ? ? metalc6 metalc ? ? A DC 10 OP1 ? ? ? 1_555 C K . K ? ? A DC 10 A K 21 1_555 ? ? ? ? ? ? ? 2.682 ? ? metalc7 metalc ? ? A DC 10 OP2 ? ? ? 2_554 E K . K ? ? A DC 10 B K 23 1_555 ? ? ? ? ? ? ? 2.798 ? ? metalc8 metalc ? ? C K . K ? ? ? 1_555 B DT 4 "O3'" ? ? A K 21 B DT 14 4_556 ? ? ? ? ? ? ? 2.891 ? ? metalc9 metalc ? ? C K . K ? ? ? 1_555 B DA 5 OP1 ? ? A K 21 B DA 15 4_556 ? ? ? ? ? ? ? 3.034 ? ? metalc10 metalc ? ? C K . K ? ? ? 1_555 B DC 10 OP1 ? ? A K 21 B DC 20 3_555 ? ? ? ? ? ? ? 3.201 ? ? metalc11 metalc ? ? C K . K ? ? ? 1_555 B DC 10 OP2 ? ? A K 21 B DC 20 3_555 ? ? ? ? ? ? ? 3.541 ? ? metalc12 metalc ? ? C K . K ? ? ? 1_555 G HOH . O ? ? A K 21 B HOH 139 3_555 ? ? ? ? ? ? ? 2.883 ? ? metalc13 metalc ? ? C K . K ? ? ? 1_555 G HOH . O ? ? A K 21 B HOH 140 4_556 ? ? ? ? ? ? ? 2.595 ? ? metalc14 metalc ? ? D K . K ? ? ? 1_555 F HOH . O ? ? A K 22 A HOH 146 1_555 ? ? ? ? ? ? ? 2.661 ? ? metalc15 metalc ? ? D K . K ? ? ? 1_555 F HOH . O ? ? A K 22 A HOH 151 1_555 ? ? ? ? ? ? ? 3.248 ? ? metalc16 metalc ? ? D K . K ? ? ? 1_555 F HOH . O ? ? A K 22 A HOH 161 1_555 ? ? ? ? ? ? ? 3.362 ? ? metalc17 metalc ? ? F HOH . O ? ? ? 2_554 E K . K ? ? A HOH 157 B K 23 1_555 ? ? ? ? ? ? ? 3.347 ? ? metalc18 metalc ? ? B DT 4 "O4'" ? ? ? 3_545 E K . K ? ? B DT 14 B K 23 1_555 ? ? ? ? ? ? ? 3.288 ? ? metalc19 metalc ? ? B DC 10 "O3'" ? ? ? 1_555 E K . K ? ? B DC 20 B K 23 1_555 ? ? ? ? ? ? ? 2.467 ? ? metalc20 metalc ? ? E K . K ? ? ? 1_555 G HOH . O ? ? B K 23 B HOH 117 3_545 ? ? ? ? ? ? ? 3.624 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B T23 6 N3 ? ? A DA 5 B T23 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B T23 6 O4 ? ? A DA 5 B T23 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A T23 6 N3 ? ? ? 1_555 B DA 5 N1 ? ? A T23 6 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A T23 6 O4 ? ? ? 1_555 B DA 5 N6 ? ? A T23 6 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 10 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 10 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 10 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 22 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 1_555 52.6 ? 2 N7 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 22 ? 1_555 O4 ? A DT 4 ? A DT 4 ? 1_555 85.1 ? 3 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 22 ? 1_555 O4 ? A DT 4 ? A DT 4 ? 1_555 65.7 ? 4 N7 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 22 ? 1_555 N6 ? A DA 5 ? A DA 5 ? 1_555 144.8 ? 5 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 22 ? 1_555 N6 ? A DA 5 ? A DA 5 ? 1_555 105.4 ? 6 O4 ? A DT 4 ? A DT 4 ? 1_555 K ? D K . ? A K 22 ? 1_555 N6 ? A DA 5 ? A DA 5 ? 1_555 59.8 ? 7 N7 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 22 ? 1_555 O ? F HOH . ? A HOH 146 ? 1_555 77.7 ? 8 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 22 ? 1_555 O ? F HOH . ? A HOH 146 ? 1_555 55.4 ? 9 O4 ? A DT 4 ? A DT 4 ? 1_555 K ? D K . ? A K 22 ? 1_555 O ? F HOH . ? A HOH 146 ? 1_555 116.5 ? 10 N6 ? A DA 5 ? A DA 5 ? 1_555 K ? D K . ? A K 22 ? 1_555 O ? F HOH . ? A HOH 146 ? 1_555 114.4 ? 11 N7 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 22 ? 1_555 O ? F HOH . ? A HOH 151 ? 1_555 64.1 ? 12 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 22 ? 1_555 O ? F HOH . ? A HOH 151 ? 1_555 115.6 ? 13 O4 ? A DT 4 ? A DT 4 ? 1_555 K ? D K . ? A K 22 ? 1_555 O ? F HOH . ? A HOH 151 ? 1_555 101.3 ? 14 N6 ? A DA 5 ? A DA 5 ? 1_555 K ? D K . ? A K 22 ? 1_555 O ? F HOH . ? A HOH 151 ? 1_555 121.4 ? 15 O ? F HOH . ? A HOH 146 ? 1_555 K ? D K . ? A K 22 ? 1_555 O ? F HOH . ? A HOH 151 ? 1_555 122.9 ? 16 N7 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 22 ? 1_555 O ? F HOH . ? A HOH 161 ? 1_555 53.8 ? 17 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 22 ? 1_555 O ? F HOH . ? A HOH 161 ? 1_555 65.4 ? 18 O4 ? A DT 4 ? A DT 4 ? 1_555 K ? D K . ? A K 22 ? 1_555 O ? F HOH . ? A HOH 161 ? 1_555 129.0 ? 19 N6 ? A DA 5 ? A DA 5 ? 1_555 K ? D K . ? A K 22 ? 1_555 O ? F HOH . ? A HOH 161 ? 1_555 149.4 ? 20 O ? F HOH . ? A HOH 146 ? 1_555 K ? D K . ? A K 22 ? 1_555 O ? F HOH . ? A HOH 161 ? 1_555 35.5 ? 21 O ? F HOH . ? A HOH 151 ? 1_555 K ? D K . ? A K 22 ? 1_555 O ? F HOH . ? A HOH 161 ? 1_555 87.4 ? 22 "O3'" ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 21 ? 1_555 OP1 ? A DC 10 ? A DC 10 ? 1_555 53.6 ? 23 "O3'" ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 21 ? 1_555 "O3'" ? B DT 4 ? B DT 14 ? 4_556 121.6 ? 24 OP1 ? A DC 10 ? A DC 10 ? 1_555 K ? C K . ? A K 21 ? 1_555 "O3'" ? B DT 4 ? B DT 14 ? 4_556 73.2 ? 25 "O3'" ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 21 ? 1_555 OP1 ? B DA 5 ? B DA 15 ? 4_556 168.6 ? 26 OP1 ? A DC 10 ? A DC 10 ? 1_555 K ? C K . ? A K 21 ? 1_555 OP1 ? B DA 5 ? B DA 15 ? 4_556 115.1 ? 27 "O3'" ? B DT 4 ? B DT 14 ? 4_556 K ? C K . ? A K 21 ? 1_555 OP1 ? B DA 5 ? B DA 15 ? 4_556 49.8 ? 28 "O3'" ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 21 ? 1_555 OP1 ? B DC 10 ? B DC 20 ? 3_555 96.8 ? 29 OP1 ? A DC 10 ? A DC 10 ? 1_555 K ? C K . ? A K 21 ? 1_555 OP1 ? B DC 10 ? B DC 20 ? 3_555 145.5 ? 30 "O3'" ? B DT 4 ? B DT 14 ? 4_556 K ? C K . ? A K 21 ? 1_555 OP1 ? B DC 10 ? B DC 20 ? 3_555 140.5 ? 31 OP1 ? B DA 5 ? B DA 15 ? 4_556 K ? C K . ? A K 21 ? 1_555 OP1 ? B DC 10 ? B DC 20 ? 3_555 93.1 ? 32 "O3'" ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 21 ? 1_555 OP2 ? B DC 10 ? B DC 20 ? 3_555 83.6 ? 33 OP1 ? A DC 10 ? A DC 10 ? 1_555 K ? C K . ? A K 21 ? 1_555 OP2 ? B DC 10 ? B DC 20 ? 3_555 132.1 ? 34 "O3'" ? B DT 4 ? B DT 14 ? 4_556 K ? C K . ? A K 21 ? 1_555 OP2 ? B DC 10 ? B DC 20 ? 3_555 125.5 ? 35 OP1 ? B DA 5 ? B DA 15 ? 4_556 K ? C K . ? A K 21 ? 1_555 OP2 ? B DC 10 ? B DC 20 ? 3_555 107.6 ? 36 OP1 ? B DC 10 ? B DC 20 ? 3_555 K ? C K . ? A K 21 ? 1_555 OP2 ? B DC 10 ? B DC 20 ? 3_555 44.5 ? 37 "O3'" ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 21 ? 1_555 O ? G HOH . ? B HOH 139 ? 3_555 86.9 ? 38 OP1 ? A DC 10 ? A DC 10 ? 1_555 K ? C K . ? A K 21 ? 1_555 O ? G HOH . ? B HOH 139 ? 3_555 102.4 ? 39 "O3'" ? B DT 4 ? B DT 14 ? 4_556 K ? C K . ? A K 21 ? 1_555 O ? G HOH . ? B HOH 139 ? 3_555 82.4 ? 40 OP1 ? B DA 5 ? B DA 15 ? 4_556 K ? C K . ? A K 21 ? 1_555 O ? G HOH . ? B HOH 139 ? 3_555 98.5 ? 41 OP1 ? B DC 10 ? B DC 20 ? 3_555 K ? C K . ? A K 21 ? 1_555 O ? G HOH . ? B HOH 139 ? 3_555 92.0 ? 42 OP2 ? B DC 10 ? B DC 20 ? 3_555 K ? C K . ? A K 21 ? 1_555 O ? G HOH . ? B HOH 139 ? 3_555 49.0 ? 43 "O3'" ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 21 ? 1_555 O ? G HOH . ? B HOH 140 ? 4_556 106.3 ? 44 OP1 ? A DC 10 ? A DC 10 ? 1_555 K ? C K . ? A K 21 ? 1_555 O ? G HOH . ? B HOH 140 ? 4_556 96.8 ? 45 "O3'" ? B DT 4 ? B DT 14 ? 4_556 K ? C K . ? A K 21 ? 1_555 O ? G HOH . ? B HOH 140 ? 4_556 101.6 ? 46 OP1 ? B DA 5 ? B DA 15 ? 4_556 K ? C K . ? A K 21 ? 1_555 O ? G HOH . ? B HOH 140 ? 4_556 71.2 ? 47 OP1 ? B DC 10 ? B DC 20 ? 3_555 K ? C K . ? A K 21 ? 1_555 O ? G HOH . ? B HOH 140 ? 4_556 72.8 ? 48 OP2 ? B DC 10 ? B DC 20 ? 3_555 K ? C K . ? A K 21 ? 1_555 O ? G HOH . ? B HOH 140 ? 4_556 117.3 ? 49 O ? G HOH . ? B HOH 139 ? 3_555 K ? C K . ? A K 21 ? 1_555 O ? G HOH . ? B HOH 140 ? 4_556 160.7 ? 50 OP2 ? A DC 10 ? A DC 10 ? 2_554 K ? E K . ? B K 23 ? 1_555 O ? F HOH . ? A HOH 157 ? 2_554 58.8 ? 51 OP2 ? A DC 10 ? A DC 10 ? 2_554 K ? E K . ? B K 23 ? 1_555 "O4'" ? B DT 4 ? B DT 14 ? 3_545 113.1 ? 52 O ? F HOH . ? A HOH 157 ? 2_554 K ? E K . ? B K 23 ? 1_555 "O4'" ? B DT 4 ? B DT 14 ? 3_545 82.5 ? 53 OP2 ? A DC 10 ? A DC 10 ? 2_554 K ? E K . ? B K 23 ? 1_555 "O3'" ? B DC 10 ? B DC 20 ? 1_555 123.5 ? 54 O ? F HOH . ? A HOH 157 ? 2_554 K ? E K . ? B K 23 ? 1_555 "O3'" ? B DC 10 ? B DC 20 ? 1_555 157.4 ? 55 "O4'" ? B DT 4 ? B DT 14 ? 3_545 K ? E K . ? B K 23 ? 1_555 "O3'" ? B DC 10 ? B DC 20 ? 1_555 112.7 ? 56 OP2 ? A DC 10 ? A DC 10 ? 2_554 K ? E K . ? B K 23 ? 1_555 O ? G HOH . ? B HOH 117 ? 3_545 152.3 ? 57 O ? F HOH . ? A HOH 157 ? 2_554 K ? E K . ? B K 23 ? 1_555 O ? G HOH . ? B HOH 117 ? 3_545 99.7 ? 58 "O4'" ? B DT 4 ? B DT 14 ? 3_545 K ? E K . ? B K 23 ? 1_555 O ? G HOH . ? B HOH 117 ? 3_545 77.6 ? 59 "O3'" ? B DC 10 ? B DC 20 ? 1_555 K ? E K . ? B K 23 ? 1_555 O ? G HOH . ? B HOH 117 ? 3_545 69.2 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 21 ? 7 'BINDING SITE FOR RESIDUE K A 21' AC2 Software A K 22 ? 4 'BINDING SITE FOR RESIDUE K A 22' AC3 Software B K 23 ? 3 'BINDING SITE FOR RESIDUE K B 23' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 DG A 9 ? DG A 9 . ? 1_555 ? 2 AC1 7 DC A 10 ? DC A 10 . ? 1_555 ? 3 AC1 7 DT B 4 ? DT B 14 . ? 4_556 ? 4 AC1 7 DA B 5 ? DA B 15 . ? 4_556 ? 5 AC1 7 DC B 10 ? DC B 20 . ? 3_555 ? 6 AC1 7 HOH G . ? HOH B 139 . ? 3_555 ? 7 AC1 7 HOH G . ? HOH B 140 . ? 4_556 ? 8 AC2 4 DG A 3 ? DG A 3 . ? 1_555 ? 9 AC2 4 DT A 4 ? DT A 4 . ? 1_555 ? 10 AC2 4 DA A 5 ? DA A 5 . ? 1_555 ? 11 AC2 4 HOH F . ? HOH A 146 . ? 1_555 ? 12 AC3 3 DC A 10 ? DC A 10 . ? 2_554 ? 13 AC3 3 DT B 4 ? DT B 14 . ? 3_545 ? 14 AC3 3 DC B 10 ? DC B 20 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 126 ? ? O A HOH 129 ? ? 1.56 2 1 O2 A DT 4 ? ? O A HOH 195 ? ? 1.74 3 1 N3 B DA 17 ? ? O B HOH 159 ? ? 1.81 4 1 "O4'" B T23 16 ? ? O B HOH 193 ? ? 1.93 5 1 O A HOH 146 ? ? O A HOH 161 ? ? 1.96 6 1 O B HOH 144 ? ? O B HOH 159 ? ? 1.97 7 1 OP1 B DG 19 ? ? O B HOH 183 ? ? 2.03 8 1 O A HOH 123 ? ? O A HOH 162 ? ? 2.06 9 1 C2 B DA 17 ? ? O B HOH 159 ? ? 2.07 10 1 "O3'" A DC 10 ? ? O A HOH 127 ? ? 2.11 11 1 O A HOH 114 ? ? O B HOH 117 ? ? 2.12 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 N2 _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 DG _pdbx_validate_symm_contact.auth_seq_id_1 11 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 195 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_555 _pdbx_validate_symm_contact.dist 1.98 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 K K K N N 147 T23 P P N N 148 T23 OP1 O N N 149 T23 OP2 O N N 150 T23 OP3 O N N 151 T23 "O5'" O N N 152 T23 N1 N N N 153 T23 C6 C N N 154 T23 C2 C N N 155 T23 O2 O N N 156 T23 N3 N N N 157 T23 C4 C N N 158 T23 O4 O N N 159 T23 C5 C N N 160 T23 C5M C N N 161 T23 "C2'" C N R 162 T23 "O2'" O N N 163 T23 C2M C N N 164 T23 "C5'" C N N 165 T23 "C4'" C N S 166 T23 "O4'" O N N 167 T23 "C1'" C N R 168 T23 "C3'" C N R 169 T23 C3M C N N 170 T23 HOP2 H N N 171 T23 HOP3 H N N 172 T23 H6 H N N 173 T23 H3 H N N 174 T23 H5A1 H N N 175 T23 H5A2 H N N 176 T23 H5A3 H N N 177 T23 "H2'" H N N 178 T23 H2M1 H N N 179 T23 H2M2 H N N 180 T23 H2M3 H N N 181 T23 "H5'" H N N 182 T23 "H5''" H N N 183 T23 "H4'" H N N 184 T23 "H1'" H N N 185 T23 "H3'" H N N 186 T23 H3M1 H N N 187 T23 H3M2 H N N 188 T23 H3M3 H N N 189 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 T23 P OP1 doub N N 152 T23 P OP2 sing N N 153 T23 P OP3 sing N N 154 T23 P "O5'" sing N N 155 T23 OP2 HOP2 sing N N 156 T23 OP3 HOP3 sing N N 157 T23 "O5'" "C5'" sing N N 158 T23 N1 C6 sing N N 159 T23 N1 C2 sing N N 160 T23 N1 "C1'" sing N N 161 T23 C6 C5 doub N N 162 T23 C6 H6 sing N N 163 T23 C2 O2 doub N N 164 T23 C2 N3 sing N N 165 T23 N3 C4 sing N N 166 T23 N3 H3 sing N N 167 T23 C4 O4 doub N N 168 T23 C4 C5 sing N N 169 T23 C5 C5M sing N N 170 T23 C5M H5A1 sing N N 171 T23 C5M H5A2 sing N N 172 T23 C5M H5A3 sing N N 173 T23 "C2'" "O2'" sing N N 174 T23 "C2'" "C1'" sing N N 175 T23 "C2'" "C3'" sing N N 176 T23 "C2'" "H2'" sing N N 177 T23 "O2'" C2M sing N N 178 T23 C2M H2M1 sing N N 179 T23 C2M H2M2 sing N N 180 T23 C2M H2M3 sing N N 181 T23 "C5'" "C4'" sing N N 182 T23 "C5'" "H5'" sing N N 183 T23 "C5'" "H5''" sing N N 184 T23 "C4'" "O4'" sing N N 185 T23 "C4'" "C3'" sing N N 186 T23 "C4'" "H4'" sing N N 187 T23 "O4'" "C1'" sing N N 188 T23 "C1'" "H1'" sing N N 189 T23 "C3'" C3M sing N N 190 T23 "C3'" "H3'" sing N N 191 T23 C3M H3M1 sing N N 192 T23 C3M H3M2 sing N N 193 T23 C3M H3M3 sing N N 194 # _ndb_struct_conf_na.entry_id 1I0O _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 10 1_555 -0.168 -0.237 0.253 0.121 -7.574 0.606 1 A_DG1:DC20_B A 1 ? B 20 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 0.083 -0.306 0.155 3.157 -11.161 -1.467 2 A_DC2:DG19_B A 2 ? B 19 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.553 -0.278 0.165 -5.519 -10.766 2.849 3 A_DG3:DC18_B A 3 ? B 18 ? 19 1 1 A DT 4 1_555 B DA 7 1_555 -0.005 -0.157 -0.215 -0.170 -16.787 0.645 4 A_DT4:DA17_B A 4 ? B 17 ? 20 1 1 A DA 5 1_555 B T23 6 1_555 0.164 -0.181 0.094 -0.898 -14.565 -3.387 5 A_DA5:T2316_B A 5 ? B 16 ? 20 1 1 A T23 6 1_555 B DA 5 1_555 -0.340 0.017 0.269 6.336 -14.295 7.635 6 A_T236:DA15_B A 6 ? B 15 ? 20 1 1 A DA 7 1_555 B DT 4 1_555 -0.042 -0.211 0.028 8.160 -12.218 5.004 7 A_DA7:DT14_B A 7 ? B 14 ? 20 1 1 A DC 8 1_555 B DG 3 1_555 0.151 -0.180 -0.180 7.213 -15.251 1.569 8 A_DC8:DG13_B A 8 ? B 13 ? 19 1 1 A DG 9 1_555 B DC 2 1_555 -0.190 -0.170 0.209 -1.643 -11.852 1.766 9 A_DG9:DC12_B A 9 ? B 12 ? 19 1 1 A DC 10 1_555 B DG 1 1_555 0.163 -0.060 0.011 -4.336 0.056 1.488 10 A_DC10:DG11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 10 1_555 A DC 2 1_555 B DG 9 1_555 0.282 -1.500 3.171 1.769 0.476 36.855 -2.432 -0.214 3.162 0.752 -2.796 36.899 1 AA_DG1DC2:DG19DC20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 0.482 -2.225 3.380 1.524 4.563 24.744 -6.404 -0.668 2.952 10.521 -3.514 25.201 2 AA_DC2DG3:DC18DG19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DG 3 1_555 B DC 8 1_555 A DT 4 1_555 B DA 7 1_555 -1.103 -1.567 3.089 1.247 4.774 36.550 -3.066 1.897 2.831 7.569 -1.977 36.870 3 AA_DG3DT4:DA17DC18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DT 4 1_555 B DA 7 1_555 A DA 5 1_555 B T23 6 1_555 0.763 -1.537 3.226 2.562 21.596 26.539 -5.487 -0.958 1.622 39.648 -4.704 34.188 4 AA_DT4DA5:T2316DA17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DA 5 1_555 B T23 6 1_555 A T23 6 1_555 B DA 5 1_555 1.023 -1.166 3.064 -0.072 6.497 30.830 -3.240 -1.897 2.764 12.054 0.134 31.491 5 AA_DA5T236:DA15T2316_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A T23 6 1_555 B DA 5 1_555 A DA 7 1_555 B DT 4 1_555 -0.356 -1.369 2.985 1.166 16.017 32.962 -3.995 0.699 2.105 26.370 -1.920 36.568 6 AA_T236DA7:DT14DA15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DA 7 1_555 B DT 4 1_555 A DC 8 1_555 B DG 3 1_555 0.170 -1.298 3.375 2.338 1.658 33.599 -2.514 0.097 3.313 2.861 -4.035 33.717 7 AA_DA7DC8:DG13DT14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DC 8 1_555 B DG 3 1_555 A DG 9 1_555 B DC 2 1_555 -0.126 -1.963 3.375 -3.806 11.845 28.836 -5.689 -0.428 2.399 22.509 7.233 31.354 8 AA_DC8DG9:DC12DG13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DG 9 1_555 B DC 2 1_555 A DC 10 1_555 B DG 1 1_555 0.124 -1.852 3.383 3.883 1.689 34.889 -3.327 0.389 3.287 2.805 -6.447 35.137 9 AA_DG9DC10:DG11DC12_BB A 9 ? B 12 ? A 10 ? B 11 ? # _atom_sites.entry_id 1I0O _atom_sites.fract_transf_matrix[1][1] 0.040568 _atom_sites.fract_transf_matrix[1][2] -0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022416 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022645 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N O P # loop_