data_1I2X # _entry.id 1I2X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1I2X pdb_00001i2x 10.2210/pdb1i2x/pdb NDB AH0013 ? ? RCSB RCSB012836 ? ? WWPDB D_1000012836 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-04-21 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1I2X _pdbx_database_status.recvd_initial_deposition_date 2001-02-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tereshko, V.' 1 'Wallace, S.' 2 'Usman, N.' 3 'Wincott, F.' 4 'Egli, M.' 5 # _citation.id primary _citation.title ;X-ray crystallographic observation of "in-line" and "adjacent" conformations in a bulged self-cleaving RNA/DNA hybrid. ; _citation.journal_abbrev RNA _citation.journal_volume 7 _citation.page_first 405 _citation.page_last 420 _citation.year 2001 _citation.journal_id_ASTM RNARFU _citation.country UK _citation.journal_id_ISSN 1355-8382 _citation.journal_id_CSD 2122 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11333021 _citation.pdbx_database_id_DOI 10.1017/S1355838201001935 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tereshko, V.' 1 ? primary 'Wallace, S.T.' 2 ? primary 'Usman, N.' 3 ? primary 'Wincott, F.E.' 4 ? primary 'Egli, M.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA/RNA (5'-R(*GP*CP*G)-D(P*AP*TP*AP*T)-R(P*AP*CP*GP*U)-3') ; 3471.194 4 ? ? ? ? 2 non-polymer syn SPERMIDINE 145.246 1 ? ? ? ? 3 water nat water 18.015 79 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polydeoxyribonucleotide/polyribonucleotide hybrid' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code 'GCG(DA)(DT)(DA)(DT)ACGU' _entity_poly.pdbx_seq_one_letter_code_can GCGATATACGU _entity_poly.pdbx_strand_id A,B,D,C _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 SPERMIDINE SPD 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 DA n 1 5 DT n 1 6 DA n 1 7 DT n 1 8 A n 1 9 C n 1 10 G n 1 11 U n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 SPD non-polymer . SPERMIDINE 'N-(2-AMINO-PROPYL)-1,4-DIAMINOBUTANE; PA(34)' 'C7 H19 N3' 145.246 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 G 3 3 3 G G A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 A 8 8 8 A A A . n A 1 9 C 9 9 9 C C A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n B 1 1 G 1 21 21 G G B . n B 1 2 C 2 22 22 C C B . n B 1 3 G 3 23 23 G G B . n B 1 4 DA 4 24 24 DA A B . n B 1 5 DT 5 25 25 DT T B . n B 1 6 DA 6 26 26 DA A B . n B 1 7 DT 7 27 27 DT T B . n B 1 8 A 8 28 28 A A B . n B 1 9 C 9 29 29 C C B . n B 1 10 G 10 30 30 G G B . n B 1 11 U 11 31 31 U U B . n C 1 1 G 1 101 101 G G D . n C 1 2 C 2 102 102 C C D . n C 1 3 G 3 103 103 G G D . n C 1 4 DA 4 104 104 DA A D . n C 1 5 DT 5 105 105 DT T D . n C 1 6 DA 6 106 106 DA A D . n C 1 7 DT 7 107 107 DT T D . n C 1 8 A 8 108 108 A A D . n C 1 9 C 9 109 109 C C D . n C 1 10 G 10 110 110 G G D . n C 1 11 U 11 111 111 U U D . n D 1 1 G 1 121 121 G G C . n D 1 2 C 2 122 122 C C C . n D 1 3 G 3 123 123 G G C . n D 1 4 DA 4 124 124 DA A C . n D 1 5 DT 5 125 125 DT T C . n D 1 6 DA 6 126 126 DA A C . n D 1 7 DT 7 127 127 DT T C . n D 1 8 A 8 128 128 A A C . n D 1 9 C 9 129 129 C C C . n D 1 10 G 10 130 130 G G C . n D 1 11 U 11 131 131 U U C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SPD 1 200 200 SPD SPD D . F 3 HOH 1 205 205 HOH HOH A . F 3 HOH 2 208 208 HOH HOH A . F 3 HOH 3 214 214 HOH HOH A . F 3 HOH 4 215 215 HOH HOH A . F 3 HOH 5 219 219 HOH HOH A . F 3 HOH 6 221 221 HOH HOH A . F 3 HOH 7 222 222 HOH HOH A . F 3 HOH 8 224 224 HOH HOH A . F 3 HOH 9 227 227 HOH HOH A . F 3 HOH 10 231 231 HOH HOH A . F 3 HOH 11 239 239 HOH HOH A . F 3 HOH 12 241 241 HOH HOH A . F 3 HOH 13 242 242 HOH HOH A . F 3 HOH 14 246 246 HOH HOH A . F 3 HOH 15 252 252 HOH HOH A . F 3 HOH 16 253 253 HOH HOH A . F 3 HOH 17 257 257 HOH HOH A . F 3 HOH 18 258 258 HOH HOH A . F 3 HOH 19 260 260 HOH HOH A . F 3 HOH 20 281 281 HOH HOH A . G 3 HOH 1 201 201 HOH HOH B . G 3 HOH 2 207 207 HOH HOH B . G 3 HOH 3 209 209 HOH HOH B . G 3 HOH 4 211 211 HOH HOH B . G 3 HOH 5 216 216 HOH HOH B . G 3 HOH 6 218 218 HOH HOH B . G 3 HOH 7 229 229 HOH HOH B . G 3 HOH 8 237 237 HOH HOH B . G 3 HOH 9 240 240 HOH HOH B . G 3 HOH 10 243 243 HOH HOH B . G 3 HOH 11 248 248 HOH HOH B . G 3 HOH 12 249 249 HOH HOH B . G 3 HOH 13 259 259 HOH HOH B . G 3 HOH 14 265 265 HOH HOH B . G 3 HOH 15 279 279 HOH HOH B . H 3 HOH 1 202 202 HOH HOH D . H 3 HOH 2 203 203 HOH HOH D . H 3 HOH 3 204 204 HOH HOH D . H 3 HOH 4 206 206 HOH HOH D . H 3 HOH 5 217 217 HOH HOH D . H 3 HOH 6 228 228 HOH HOH D . H 3 HOH 7 234 234 HOH HOH D . H 3 HOH 8 235 235 HOH HOH D . H 3 HOH 9 238 238 HOH HOH D . H 3 HOH 10 244 244 HOH HOH D . H 3 HOH 11 245 245 HOH HOH D . H 3 HOH 12 247 247 HOH HOH D . H 3 HOH 13 263 263 HOH HOH D . H 3 HOH 14 264 264 HOH HOH D . H 3 HOH 15 266 266 HOH HOH D . H 3 HOH 16 268 268 HOH HOH D . H 3 HOH 17 272 272 HOH HOH D . H 3 HOH 18 273 273 HOH HOH D . H 3 HOH 19 276 276 HOH HOH D . H 3 HOH 20 278 278 HOH HOH D . I 3 HOH 1 210 210 HOH HOH C . I 3 HOH 2 212 212 HOH HOH C . I 3 HOH 3 213 213 HOH HOH C . I 3 HOH 4 223 223 HOH HOH C . I 3 HOH 5 225 225 HOH HOH C . I 3 HOH 6 226 226 HOH HOH C . I 3 HOH 7 232 232 HOH HOH C . I 3 HOH 8 233 233 HOH HOH C . I 3 HOH 9 236 236 HOH HOH C . I 3 HOH 10 250 250 HOH HOH C . I 3 HOH 11 251 251 HOH HOH C . I 3 HOH 12 254 254 HOH HOH C . I 3 HOH 13 255 255 HOH HOH C . I 3 HOH 14 256 256 HOH HOH C . I 3 HOH 15 261 261 HOH HOH C . I 3 HOH 16 262 262 HOH HOH C . I 3 HOH 17 267 267 HOH HOH C . I 3 HOH 18 269 269 HOH HOH C . I 3 HOH 19 270 270 HOH HOH C . I 3 HOH 20 271 271 HOH HOH C . I 3 HOH 21 274 274 HOH HOH C . I 3 HOH 22 275 275 HOH HOH C . I 3 HOH 23 277 277 HOH HOH C . I 3 HOH 24 280 280 HOH HOH C . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 CNS refinement 1.0 ? 4 # _cell.entry_id 1I2X _cell.length_a 27.69 _cell.length_b 47.71 _cell.length_c 113.62 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1I2X _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1I2X _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.68 _exptl_crystal.density_percent_sol 54.07 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'spermidine, MPD. pH 6.0, VAPOR DIFFUSION, SITTING DROP at 298' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 spermidine ? ? ? 1 2 1 MPD ? ? ? 1 3 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1998-11-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1I2X _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.4 _reflns.number_obs 6220 _reflns.number_all 6220 _reflns.percent_possible_obs 95.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1I2X _refine.ls_number_reflns_obs 6220 _refine.ls_number_reflns_all 6220 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 10 _refine.ls_d_res_high 2.4 _refine.ls_percent_reflns_obs 95.7 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2495 _refine.ls_R_factor_R_free 0.2782 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.3 _refine.ls_number_reflns_R_free 453 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 920 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 81 _refine_hist.number_atoms_total 1011 _refine_hist.d_res_high 2.4 _refine_hist.d_res_low 10 # _database_PDB_matrix.entry_id 1I2X _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1I2X _struct.title '2.4 A STRUCTURE OF A-DUPLEX WITH BULGED ADENOSINE, SPERMIDINE FORM' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1I2X _struct_keywords.pdbx_keywords 'DNA-RNA HYBRID' _struct_keywords.text ;'adenine bulge, A-type NA, DNA/RNA hybrid', DNA-RNA HYBRID ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1I2X _struct_ref.pdbx_db_accession 1I2X _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1I2X A 1 ? 11 ? 1I2X 1 ? 11 ? 1 11 2 1 1I2X B 1 ? 11 ? 1I2X 21 ? 31 ? 21 31 3 1 1I2X D 1 ? 11 ? 1I2X 101 ? 111 ? 101 111 4 1 1I2X C 1 ? 11 ? 1I2X 121 ? 131 ? 121 131 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,F,G 2 1 C,D,E,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B U 11 O2 ? ? A G 1 B U 31 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog2 hydrog ? ? A G 1 O6 ? ? ? 1_555 B U 11 N3 ? ? A G 1 B U 31 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 2 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 2 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 2 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 3 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 3 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 3 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 4 B DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 4 B DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 5 B DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 5 B DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 6 B DT 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 6 B DT 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 7 B DA 24 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog16 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 9 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 9 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 9 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 10 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 10 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 10 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 11 N3 ? ? ? 1_555 B G 1 O6 ? ? A U 11 B G 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog23 hydrog ? ? A U 11 O2 ? ? ? 1_555 B G 1 N1 ? ? A U 11 B G 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog24 hydrog ? ? C G 1 N1 ? ? ? 1_555 D U 11 O2 ? ? D G 101 C U 131 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog25 hydrog ? ? C G 1 O6 ? ? ? 1_555 D U 11 N3 ? ? D G 101 C U 131 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog26 hydrog ? ? C C 2 N3 ? ? ? 1_555 D G 10 N1 ? ? D C 102 C G 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C C 2 N4 ? ? ? 1_555 D G 10 O6 ? ? D C 102 C G 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C C 2 O2 ? ? ? 1_555 D G 10 N2 ? ? D C 102 C G 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C G 3 N1 ? ? ? 1_555 D C 9 N3 ? ? D G 103 C C 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C G 3 N2 ? ? ? 1_555 D C 9 O2 ? ? D G 103 C C 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C G 3 O6 ? ? ? 1_555 D C 9 N4 ? ? D G 103 C C 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DA 4 N1 ? ? ? 1_555 D DT 7 N3 ? ? D DA 104 C DT 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DA 4 N6 ? ? ? 1_555 D DT 7 O4 ? ? D DA 104 C DT 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DT 5 N3 ? ? ? 1_555 D DA 6 N1 ? ? D DT 105 C DA 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DT 5 O4 ? ? ? 1_555 D DA 6 N6 ? ? D DT 105 C DA 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DA 6 N1 ? ? ? 1_555 D DT 5 N3 ? ? D DA 106 C DT 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DA 6 N6 ? ? ? 1_555 D DT 5 O4 ? ? D DA 106 C DT 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DT 7 N3 ? ? ? 1_555 D DA 4 N1 ? ? D DT 107 C DA 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DT 7 O4 ? ? ? 1_555 D DA 4 N6 ? ? D DT 107 C DA 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C C 9 N3 ? ? ? 1_555 D G 3 N1 ? ? D C 109 C G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C C 9 N4 ? ? ? 1_555 D G 3 O6 ? ? D C 109 C G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C C 9 O2 ? ? ? 1_555 D G 3 N2 ? ? D C 109 C G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C G 10 N1 ? ? ? 1_555 D C 2 N3 ? ? D G 110 C C 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C G 10 N2 ? ? ? 1_555 D C 2 O2 ? ? D G 110 C C 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C G 10 O6 ? ? ? 1_555 D C 2 N4 ? ? D G 110 C C 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C U 11 N3 ? ? ? 1_555 D G 1 O6 ? ? D U 111 C G 121 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog47 hydrog ? ? C U 11 O2 ? ? ? 1_555 D G 1 N1 ? ? D U 111 C G 121 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id D _struct_site.pdbx_auth_comp_id SPD _struct_site.pdbx_auth_seq_id 200 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE SPD D 200' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 A A 8 ? A A 8 . ? 3_545 ? 2 AC1 3 C C 2 ? C D 102 . ? 1_555 ? 3 AC1 3 G C 3 ? G D 103 . ? 1_555 ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 U _pdbx_validate_rmsd_angle.auth_seq_id_1 11 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 U _pdbx_validate_rmsd_angle.auth_seq_id_2 11 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "O3'" _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 U _pdbx_validate_rmsd_angle.auth_seq_id_3 11 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 126.15 _pdbx_validate_rmsd_angle.angle_target_value 113.00 _pdbx_validate_rmsd_angle.angle_deviation 13.15 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.00 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 1 ? ? 0.060 'SIDE CHAIN' 2 1 G B 21 ? ? 0.054 'SIDE CHAIN' 3 1 A B 28 ? ? 0.056 'SIDE CHAIN' 4 1 DT D 105 ? ? 0.070 'SIDE CHAIN' 5 1 C C 129 ? ? 0.066 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 DA OP3 O N N 73 DA P P N N 74 DA OP1 O N N 75 DA OP2 O N N 76 DA "O5'" O N N 77 DA "C5'" C N N 78 DA "C4'" C N R 79 DA "O4'" O N N 80 DA "C3'" C N S 81 DA "O3'" O N N 82 DA "C2'" C N N 83 DA "C1'" C N R 84 DA N9 N Y N 85 DA C8 C Y N 86 DA N7 N Y N 87 DA C5 C Y N 88 DA C6 C Y N 89 DA N6 N N N 90 DA N1 N Y N 91 DA C2 C Y N 92 DA N3 N Y N 93 DA C4 C Y N 94 DA HOP3 H N N 95 DA HOP2 H N N 96 DA "H5'" H N N 97 DA "H5''" H N N 98 DA "H4'" H N N 99 DA "H3'" H N N 100 DA "HO3'" H N N 101 DA "H2'" H N N 102 DA "H2''" H N N 103 DA "H1'" H N N 104 DA H8 H N N 105 DA H61 H N N 106 DA H62 H N N 107 DA H2 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 G OP3 O N N 145 G P P N N 146 G OP1 O N N 147 G OP2 O N N 148 G "O5'" O N N 149 G "C5'" C N N 150 G "C4'" C N R 151 G "O4'" O N N 152 G "C3'" C N S 153 G "O3'" O N N 154 G "C2'" C N R 155 G "O2'" O N N 156 G "C1'" C N R 157 G N9 N Y N 158 G C8 C Y N 159 G N7 N Y N 160 G C5 C Y N 161 G C6 C N N 162 G O6 O N N 163 G N1 N N N 164 G C2 C N N 165 G N2 N N N 166 G N3 N N N 167 G C4 C Y N 168 G HOP3 H N N 169 G HOP2 H N N 170 G "H5'" H N N 171 G "H5''" H N N 172 G "H4'" H N N 173 G "H3'" H N N 174 G "HO3'" H N N 175 G "H2'" H N N 176 G "HO2'" H N N 177 G "H1'" H N N 178 G H8 H N N 179 G H1 H N N 180 G H21 H N N 181 G H22 H N N 182 HOH O O N N 183 HOH H1 H N N 184 HOH H2 H N N 185 SPD N1 N N N 186 SPD C2 C N N 187 SPD C3 C N N 188 SPD C4 C N N 189 SPD C5 C N N 190 SPD N6 N N N 191 SPD C7 C N N 192 SPD C8 C N N 193 SPD C9 C N N 194 SPD N10 N N N 195 SPD HN11 H N N 196 SPD HN12 H N N 197 SPD H21 H N N 198 SPD H22 H N N 199 SPD H31 H N N 200 SPD H32 H N N 201 SPD H41 H N N 202 SPD H42 H N N 203 SPD H51 H N N 204 SPD H52 H N N 205 SPD HN6 H N N 206 SPD H71 H N N 207 SPD H72 H N N 208 SPD H81 H N N 209 SPD H82 H N N 210 SPD H91 H N N 211 SPD H92 H N N 212 SPD H101 H N N 213 SPD H102 H N N 214 U OP3 O N N 215 U P P N N 216 U OP1 O N N 217 U OP2 O N N 218 U "O5'" O N N 219 U "C5'" C N N 220 U "C4'" C N R 221 U "O4'" O N N 222 U "C3'" C N S 223 U "O3'" O N N 224 U "C2'" C N R 225 U "O2'" O N N 226 U "C1'" C N R 227 U N1 N N N 228 U C2 C N N 229 U O2 O N N 230 U N3 N N N 231 U C4 C N N 232 U O4 O N N 233 U C5 C N N 234 U C6 C N N 235 U HOP3 H N N 236 U HOP2 H N N 237 U "H5'" H N N 238 U "H5''" H N N 239 U "H4'" H N N 240 U "H3'" H N N 241 U "HO3'" H N N 242 U "H2'" H N N 243 U "HO2'" H N N 244 U "H1'" H N N 245 U H3 H N N 246 U H5 H N N 247 U H6 H N N 248 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 DA OP3 P sing N N 76 DA OP3 HOP3 sing N N 77 DA P OP1 doub N N 78 DA P OP2 sing N N 79 DA P "O5'" sing N N 80 DA OP2 HOP2 sing N N 81 DA "O5'" "C5'" sing N N 82 DA "C5'" "C4'" sing N N 83 DA "C5'" "H5'" sing N N 84 DA "C5'" "H5''" sing N N 85 DA "C4'" "O4'" sing N N 86 DA "C4'" "C3'" sing N N 87 DA "C4'" "H4'" sing N N 88 DA "O4'" "C1'" sing N N 89 DA "C3'" "O3'" sing N N 90 DA "C3'" "C2'" sing N N 91 DA "C3'" "H3'" sing N N 92 DA "O3'" "HO3'" sing N N 93 DA "C2'" "C1'" sing N N 94 DA "C2'" "H2'" sing N N 95 DA "C2'" "H2''" sing N N 96 DA "C1'" N9 sing N N 97 DA "C1'" "H1'" sing N N 98 DA N9 C8 sing Y N 99 DA N9 C4 sing Y N 100 DA C8 N7 doub Y N 101 DA C8 H8 sing N N 102 DA N7 C5 sing Y N 103 DA C5 C6 sing Y N 104 DA C5 C4 doub Y N 105 DA C6 N6 sing N N 106 DA C6 N1 doub Y N 107 DA N6 H61 sing N N 108 DA N6 H62 sing N N 109 DA N1 C2 sing Y N 110 DA C2 N3 doub Y N 111 DA C2 H2 sing N N 112 DA N3 C4 sing Y N 113 DT OP3 P sing N N 114 DT OP3 HOP3 sing N N 115 DT P OP1 doub N N 116 DT P OP2 sing N N 117 DT P "O5'" sing N N 118 DT OP2 HOP2 sing N N 119 DT "O5'" "C5'" sing N N 120 DT "C5'" "C4'" sing N N 121 DT "C5'" "H5'" sing N N 122 DT "C5'" "H5''" sing N N 123 DT "C4'" "O4'" sing N N 124 DT "C4'" "C3'" sing N N 125 DT "C4'" "H4'" sing N N 126 DT "O4'" "C1'" sing N N 127 DT "C3'" "O3'" sing N N 128 DT "C3'" "C2'" sing N N 129 DT "C3'" "H3'" sing N N 130 DT "O3'" "HO3'" sing N N 131 DT "C2'" "C1'" sing N N 132 DT "C2'" "H2'" sing N N 133 DT "C2'" "H2''" sing N N 134 DT "C1'" N1 sing N N 135 DT "C1'" "H1'" sing N N 136 DT N1 C2 sing N N 137 DT N1 C6 sing N N 138 DT C2 O2 doub N N 139 DT C2 N3 sing N N 140 DT N3 C4 sing N N 141 DT N3 H3 sing N N 142 DT C4 O4 doub N N 143 DT C4 C5 sing N N 144 DT C5 C7 sing N N 145 DT C5 C6 doub N N 146 DT C7 H71 sing N N 147 DT C7 H72 sing N N 148 DT C7 H73 sing N N 149 DT C6 H6 sing N N 150 G OP3 P sing N N 151 G OP3 HOP3 sing N N 152 G P OP1 doub N N 153 G P OP2 sing N N 154 G P "O5'" sing N N 155 G OP2 HOP2 sing N N 156 G "O5'" "C5'" sing N N 157 G "C5'" "C4'" sing N N 158 G "C5'" "H5'" sing N N 159 G "C5'" "H5''" sing N N 160 G "C4'" "O4'" sing N N 161 G "C4'" "C3'" sing N N 162 G "C4'" "H4'" sing N N 163 G "O4'" "C1'" sing N N 164 G "C3'" "O3'" sing N N 165 G "C3'" "C2'" sing N N 166 G "C3'" "H3'" sing N N 167 G "O3'" "HO3'" sing N N 168 G "C2'" "O2'" sing N N 169 G "C2'" "C1'" sing N N 170 G "C2'" "H2'" sing N N 171 G "O2'" "HO2'" sing N N 172 G "C1'" N9 sing N N 173 G "C1'" "H1'" sing N N 174 G N9 C8 sing Y N 175 G N9 C4 sing Y N 176 G C8 N7 doub Y N 177 G C8 H8 sing N N 178 G N7 C5 sing Y N 179 G C5 C6 sing N N 180 G C5 C4 doub Y N 181 G C6 O6 doub N N 182 G C6 N1 sing N N 183 G N1 C2 sing N N 184 G N1 H1 sing N N 185 G C2 N2 sing N N 186 G C2 N3 doub N N 187 G N2 H21 sing N N 188 G N2 H22 sing N N 189 G N3 C4 sing N N 190 HOH O H1 sing N N 191 HOH O H2 sing N N 192 SPD N1 C2 sing N N 193 SPD N1 HN11 sing N N 194 SPD N1 HN12 sing N N 195 SPD C2 C3 sing N N 196 SPD C2 H21 sing N N 197 SPD C2 H22 sing N N 198 SPD C3 C4 sing N N 199 SPD C3 H31 sing N N 200 SPD C3 H32 sing N N 201 SPD C4 C5 sing N N 202 SPD C4 H41 sing N N 203 SPD C4 H42 sing N N 204 SPD C5 N6 sing N N 205 SPD C5 H51 sing N N 206 SPD C5 H52 sing N N 207 SPD N6 C7 sing N N 208 SPD N6 HN6 sing N N 209 SPD C7 C8 sing N N 210 SPD C7 H71 sing N N 211 SPD C7 H72 sing N N 212 SPD C8 C9 sing N N 213 SPD C8 H81 sing N N 214 SPD C8 H82 sing N N 215 SPD C9 N10 sing N N 216 SPD C9 H91 sing N N 217 SPD C9 H92 sing N N 218 SPD N10 H101 sing N N 219 SPD N10 H102 sing N N 220 U OP3 P sing N N 221 U OP3 HOP3 sing N N 222 U P OP1 doub N N 223 U P OP2 sing N N 224 U P "O5'" sing N N 225 U OP2 HOP2 sing N N 226 U "O5'" "C5'" sing N N 227 U "C5'" "C4'" sing N N 228 U "C5'" "H5'" sing N N 229 U "C5'" "H5''" sing N N 230 U "C4'" "O4'" sing N N 231 U "C4'" "C3'" sing N N 232 U "C4'" "H4'" sing N N 233 U "O4'" "C1'" sing N N 234 U "C3'" "O3'" sing N N 235 U "C3'" "C2'" sing N N 236 U "C3'" "H3'" sing N N 237 U "O3'" "HO3'" sing N N 238 U "C2'" "O2'" sing N N 239 U "C2'" "C1'" sing N N 240 U "C2'" "H2'" sing N N 241 U "O2'" "HO2'" sing N N 242 U "C1'" N1 sing N N 243 U "C1'" "H1'" sing N N 244 U N1 C2 sing N N 245 U N1 C6 sing N N 246 U C2 O2 doub N N 247 U C2 N3 sing N N 248 U N3 C4 sing N N 249 U N3 H3 sing N N 250 U C4 O4 doub N N 251 U C4 C5 sing N N 252 U C5 C6 doub N N 253 U C5 H5 sing N N 254 U C6 H6 sing N N 255 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1I2X 'double helix' 1I2X 'a-form double helix' 1I2X 'b-form double helix' 1I2X 'bulge loop' 1I2X 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 A U 11 1_555 -2.559 -0.524 0.555 8.302 1.591 -2.685 1 B_G21:U11_A B 21 ? A 11 ? 28 ? 1 B C 2 1_555 A G 10 1_555 0.009 0.084 -0.174 10.228 -26.596 5.634 2 B_C22:G10_A B 22 ? A 10 ? 19 1 1 B G 3 1_555 A C 9 1_555 -0.110 -0.121 -0.529 -17.693 -26.512 1.736 3 B_G23:C9_A B 23 ? A 9 ? 19 1 1 B DA 4 1_555 A DT 7 1_555 -0.012 0.134 0.065 -10.364 -18.296 11.254 4 B_DA24:DT7_A B 24 ? A 7 ? ? 1 1 B DT 5 1_555 A DA 6 1_555 0.114 -0.376 -0.572 7.189 -10.675 -0.363 5 B_DT25:DA6_A B 25 ? A 6 ? 20 1 1 B DA 6 1_555 A DT 5 1_555 -0.763 -0.597 -0.755 -8.521 -8.529 -1.719 6 B_DA26:DT5_A B 26 ? A 5 ? 20 1 1 B DT 7 1_555 A DA 4 1_555 -0.377 -0.502 -0.262 6.270 -9.029 1.330 7 B_DT27:DA4_A B 27 ? A 4 ? 20 1 1 B C 9 1_555 A G 3 1_555 -0.015 -0.343 -0.113 8.789 -18.341 -8.424 8 B_C29:G3_A B 29 ? A 3 ? 19 1 1 B G 10 1_555 A C 2 1_555 0.244 0.061 0.353 1.153 -15.922 -8.308 9 B_G30:C2_A B 30 ? A 2 ? 19 1 1 B U 11 1_555 A G 1 1_555 2.538 -0.841 0.139 -2.664 0.739 -3.908 10 B_U31:G1_A B 31 ? A 1 ? 28 ? 1 D G 1 1_555 C U 11 1_555 -2.139 -0.372 1.008 9.918 -7.615 4.146 11 C_G121:U111_D C 121 ? D 111 ? 28 1 1 D C 2 1_555 C G 10 1_555 -0.023 -0.347 0.232 5.076 -16.927 1.551 12 C_C122:G110_D C 122 ? D 110 ? 19 1 1 D G 3 1_555 C C 9 1_555 0.866 -0.083 -0.331 -19.547 -15.974 -4.449 13 C_G123:C109_D C 123 ? D 109 ? 19 1 1 D DA 4 1_555 C DT 7 1_555 -0.582 -0.129 -0.042 -17.696 -16.203 14.206 14 C_DA124:DT107_D C 124 ? D 107 ? 20 1 1 D DT 5 1_555 C DA 6 1_555 -0.708 -0.297 -0.008 2.402 -17.759 13.491 15 C_DT125:DA106_D C 125 ? D 106 ? 20 1 1 D DA 6 1_555 C DT 5 1_555 -0.001 -0.002 0.025 6.334 -18.333 -0.415 16 C_DA126:DT105_D C 126 ? D 105 ? 20 1 1 D DT 7 1_555 C DA 4 1_555 -0.688 0.062 -0.351 10.987 -9.669 -5.041 17 C_DT127:DA104_D C 127 ? D 104 ? 20 1 1 D C 9 1_555 C G 3 1_555 -0.240 -0.331 -0.286 17.167 -18.987 2.707 18 C_C129:G103_D C 129 ? D 103 ? 19 1 1 D G 10 1_555 C C 2 1_555 -0.575 -0.068 0.052 -5.956 -24.246 1.541 19 C_G130:C102_D C 130 ? D 102 ? 19 1 1 D U 11 1_555 C G 1 1_555 2.754 -0.561 0.822 -8.989 -5.020 2.414 20 C_U131:G101_D C 131 ? D 101 ? 28 ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 A U 11 1_555 B C 2 1_555 A G 10 1_555 0.147 -1.137 3.203 4.596 6.827 42.890 -2.156 0.224 2.996 9.235 -6.217 43.636 1 BB_G21C22:G10U11_AA B 21 ? A 11 ? B 22 ? A 10 ? 1 B C 2 1_555 A G 10 1_555 B G 3 1_555 A C 9 1_555 -0.223 -1.618 3.838 1.614 19.705 34.624 -4.800 0.526 2.575 30.252 -2.478 39.720 2 BB_C22G23:C9G10_AA B 22 ? A 10 ? B 23 ? A 9 ? 1 B G 3 1_555 A C 9 1_555 B DA 4 1_555 A DT 7 1_555 -0.756 -1.178 3.108 -6.184 5.568 22.777 -4.463 -0.041 2.847 13.532 15.030 24.230 3 BB_G23DA24:DT7C9_AA B 23 ? A 9 ? B 24 ? A 7 ? 1 B DA 4 1_555 A DT 7 1_555 B DT 5 1_555 A DA 6 1_555 -0.210 -0.310 2.735 4.419 3.276 32.806 -0.995 0.978 2.642 5.751 -7.756 33.251 4 BB_DA24DT25:DA6DT7_AA B 24 ? A 7 ? B 25 ? A 6 ? 1 B DT 5 1_555 A DA 6 1_555 B DA 6 1_555 A DT 5 1_555 0.194 -0.518 3.903 3.156 9.012 31.329 -2.751 0.297 3.620 16.222 -5.681 32.717 5 BB_DT25DA26:DT5DA6_AA B 25 ? A 6 ? B 26 ? A 5 ? 1 B DA 6 1_555 A DT 5 1_555 B DT 7 1_555 A DA 4 1_555 0.203 -0.594 2.850 -4.251 5.502 33.805 -1.731 -0.906 2.678 9.339 7.216 34.493 6 BB_DA26DT27:DA4DT5_AA B 26 ? A 5 ? B 27 ? A 4 ? 1 B DT 7 1_555 A DA 4 1_555 B C 9 1_555 A G 3 1_555 0.877 -1.045 3.239 -0.348 0.086 22.212 -2.744 -2.405 3.221 0.222 0.904 22.215 7 BB_DT27C29:G3DA4_AA B 27 ? A 4 ? B 29 ? A 3 ? 1 B C 9 1_555 A G 3 1_555 B G 10 1_555 A C 2 1_555 -0.111 -1.978 3.293 -3.822 12.347 38.071 -4.178 -0.239 2.555 18.296 5.663 40.128 8 BB_C29G30:C2G3_AA B 29 ? A 3 ? B 30 ? A 2 ? 1 B G 10 1_555 A C 2 1_555 B U 11 1_555 A G 1 1_555 0.492 -1.427 3.347 3.588 2.719 42.936 -2.211 -0.311 3.284 3.703 -4.885 43.160 9 BB_G30U31:G1C2_AA B 30 ? A 2 ? B 31 ? A 1 ? 1 B U 11 1_555 A G 1 1_555 D G 1 1_555 C U 11 1_555 0.064 -4.422 2.325 -6.025 12.678 -37.011 5.152 -0.567 3.563 -19.149 -9.099 -39.496 10 BC_U31G121:U111G1_DA B 31 ? A 1 ? C 121 ? D 111 ? 1 D G 1 1_555 C U 11 1_555 D C 2 1_555 C G 10 1_555 -0.214 -1.120 3.495 4.486 3.169 40.473 -1.972 0.826 3.360 4.556 -6.449 40.828 11 CC_G121C122:G110U111_DD C 121 ? D 111 ? C 122 ? D 110 ? 1 D C 2 1_555 C G 10 1_555 D G 3 1_555 C C 9 1_555 0.064 -2.071 3.508 2.835 22.283 43.768 -4.087 0.124 2.263 27.822 -3.539 48.942 12 CC_C122G123:C109G110_DD C 122 ? D 110 ? C 123 ? D 109 ? 1 D G 3 1_555 C C 9 1_555 D DA 4 1_555 C DT 7 1_555 -0.166 -1.128 3.367 -0.438 -2.087 17.144 -2.384 0.265 3.481 -6.966 1.463 17.275 13 CC_G123DA124:DT107C109_DD C 123 ? D 109 ? C 124 ? D 107 ? 1 D DA 4 1_555 C DT 7 1_555 D DT 5 1_555 C DA 6 1_555 -0.112 -0.321 2.834 0.736 -0.367 34.903 -0.487 0.284 2.834 -0.611 -1.227 34.913 14 CC_DA124DT125:DA106DT107_DD C 124 ? D 107 ? C 125 ? D 106 ? 1 D DT 5 1_555 C DA 6 1_555 D DA 6 1_555 C DT 5 1_555 -0.440 -0.049 3.219 0.908 7.101 36.413 -1.010 0.811 3.143 11.230 -1.435 37.087 15 CC_DT125DA126:DT105DA106_DD C 125 ? D 106 ? C 126 ? D 105 ? 1 D DA 6 1_555 C DT 5 1_555 D DT 7 1_555 C DA 4 1_555 0.570 -1.268 3.116 0.599 8.955 22.831 -5.438 -1.179 2.462 21.582 -1.444 24.510 16 CC_DA126DT127:DA104DT105_DD C 126 ? D 105 ? C 127 ? D 104 ? 1 D DT 7 1_555 C DA 4 1_555 D C 9 1_555 C G 3 1_555 1.465 -1.642 3.223 1.602 -2.752 28.762 -2.665 -2.570 3.436 -5.519 -3.212 28.935 17 CC_DT127C129:G103DA104_DD C 127 ? D 104 ? C 129 ? D 103 ? 1 D C 9 1_555 C G 3 1_555 D G 10 1_555 C C 2 1_555 -0.679 -1.876 3.642 -3.076 17.126 32.180 -5.346 0.663 2.424 28.449 5.110 36.473 18 CC_C129G130:C102G103_DD C 129 ? D 103 ? C 130 ? D 102 ? 1 D G 10 1_555 C C 2 1_555 D U 11 1_555 C G 1 1_555 0.062 -1.095 3.507 -5.951 1.903 44.352 -1.622 -0.658 3.424 2.506 7.836 44.768 19 CC_G130U131:G101C102_DD C 130 ? D 102 ? C 131 ? D 101 ? # _atom_sites.entry_id 1I2X _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.036114 _atom_sites.fract_transf_matrix[1][2] -0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020960 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008801 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_