data_1I2Y # _entry.id 1I2Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1I2Y pdb_00001i2y 10.2210/pdb1i2y/pdb NDB AH0014 ? ? RCSB RCSB012837 ? ? WWPDB D_1000012837 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-04-21 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1I2Y _pdbx_database_status.recvd_initial_deposition_date 2001-02-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tereshko, V.' 1 'Wallace, S.' 2 'Usman, N.' 3 'Wincott, F.' 4 'Egli, M.' 5 # _citation.id primary _citation.title ;X-ray crystallographic observation of "in-line" and "adjacent" conformations in a bulged self-cleaving RNA/DNA hybrid. ; _citation.journal_abbrev RNA _citation.journal_volume 7 _citation.page_first 405 _citation.page_last 420 _citation.year 2001 _citation.journal_id_ASTM RNARFU _citation.country UK _citation.journal_id_ISSN 1355-8382 _citation.journal_id_CSD 2122 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11333021 _citation.pdbx_database_id_DOI 10.1017/S1355838201001935 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tereshko, V.' 1 ? primary 'Wallace, S.T.' 2 ? primary 'Usman, N.' 3 ? primary 'Wincott, F.E.' 4 ? primary 'Egli, M.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA/RNA (5'-R(*GP*CP*G)-D(P*AP*TP*AP*T)-R(P*AP*CP*GP*U)-3') ; 3471.194 6 ? ? ? ? 2 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 3 water nat water 18.015 334 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polydeoxyribonucleotide/polyribonucleotide hybrid' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code 'GCG(DA)(DT)(DA)(DT)ACGU' _entity_poly.pdbx_seq_one_letter_code_can GCGATATACGU _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 SPERMINE SPM 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 DA n 1 5 DT n 1 6 DA n 1 7 DT n 1 8 A n 1 9 C n 1 10 G n 1 11 U n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 G 3 3 3 G G A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 A 8 8 8 A A A . n A 1 9 C 9 9 9 C C A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n B 1 1 G 1 21 21 G G B . n B 1 2 C 2 22 22 C C B . n B 1 3 G 3 23 23 G G B . n B 1 4 DA 4 24 24 DA A B . n B 1 5 DT 5 25 25 DT T B . n B 1 6 DA 6 26 26 DA A B . n B 1 7 DT 7 27 27 DT T B . n B 1 8 A 8 28 28 A A B . n B 1 9 C 9 29 29 C C B . n B 1 10 G 10 30 30 G G B . n B 1 11 U 11 31 31 U U B . n C 1 1 G 1 101 101 G G C . n C 1 2 C 2 102 102 C C C . n C 1 3 G 3 103 103 G G C . n C 1 4 DA 4 104 104 DA A C . n C 1 5 DT 5 105 105 DT T C . n C 1 6 DA 6 106 106 DA A C . n C 1 7 DT 7 107 107 DT T C . n C 1 8 A 8 108 108 A A C . n C 1 9 C 9 109 109 C C C . n C 1 10 G 10 110 110 G G C . n C 1 11 U 11 111 111 U U C . n D 1 1 G 1 121 121 G G D . n D 1 2 C 2 122 122 C C D . n D 1 3 G 3 123 123 G G D . n D 1 4 DA 4 124 124 DA A D . n D 1 5 DT 5 125 125 DT T D . n D 1 6 DA 6 126 126 DA A D . n D 1 7 DT 7 127 127 DT T D . n D 1 8 A 8 128 128 A A D . n D 1 9 C 9 129 129 C C D . n D 1 10 G 10 130 130 G G D . n D 1 11 U 11 131 131 U U D . n E 1 1 G 1 201 201 G G E . n E 1 2 C 2 202 202 C C E . n E 1 3 G 3 203 203 G G E . n E 1 4 DA 4 204 204 DA A E . n E 1 5 DT 5 205 205 DT T E . n E 1 6 DA 6 206 206 DA A E . n E 1 7 DT 7 207 207 DT T E . n E 1 8 A 8 208 208 A A E . n E 1 9 C 9 209 209 C C E . n E 1 10 G 10 210 210 G G E . n E 1 11 U 11 211 211 U U E . n F 1 1 G 1 221 221 G G F . n F 1 2 C 2 222 222 C C F . n F 1 3 G 3 223 223 G G F . n F 1 4 DA 4 224 224 DA A F . n F 1 5 DT 5 225 225 DT T F . n F 1 6 DA 6 226 226 DA A F . n F 1 7 DT 7 227 227 DT T F . n F 1 8 A 8 228 228 A A F . n F 1 9 C 9 229 229 C C F . n F 1 10 G 10 230 230 G G F . n F 1 11 U 11 231 231 U U F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 SPM 1 300 300 SPM SPM D . H 3 HOH 1 303 303 HOH HOH A . H 3 HOH 2 304 304 HOH HOH A . H 3 HOH 3 308 308 HOH HOH A . H 3 HOH 4 326 326 HOH HOH A . H 3 HOH 5 327 327 HOH HOH A . H 3 HOH 6 330 330 HOH HOH A . H 3 HOH 7 331 331 HOH HOH A . H 3 HOH 8 332 332 HOH HOH A . H 3 HOH 9 335 335 HOH HOH A . H 3 HOH 10 337 337 HOH HOH A . H 3 HOH 11 341 341 HOH HOH A . H 3 HOH 12 342 342 HOH HOH A . H 3 HOH 13 346 346 HOH HOH A . H 3 HOH 14 351 351 HOH HOH A . H 3 HOH 15 359 359 HOH HOH A . H 3 HOH 16 361 361 HOH HOH A . H 3 HOH 17 365 365 HOH HOH A . H 3 HOH 18 374 374 HOH HOH A . H 3 HOH 19 378 378 HOH HOH A . H 3 HOH 20 383 383 HOH HOH A . H 3 HOH 21 387 387 HOH HOH A . H 3 HOH 22 388 388 HOH HOH A . H 3 HOH 23 398 398 HOH HOH A . H 3 HOH 24 400 400 HOH HOH A . H 3 HOH 25 420 420 HOH HOH A . H 3 HOH 26 422 422 HOH HOH A . H 3 HOH 27 426 426 HOH HOH A . H 3 HOH 28 438 438 HOH HOH A . H 3 HOH 29 440 440 HOH HOH A . H 3 HOH 30 442 442 HOH HOH A . H 3 HOH 31 462 462 HOH HOH A . H 3 HOH 32 464 464 HOH HOH A . H 3 HOH 33 470 470 HOH HOH A . H 3 HOH 34 476 476 HOH HOH A . H 3 HOH 35 478 478 HOH HOH A . H 3 HOH 36 480 480 HOH HOH A . H 3 HOH 37 484 484 HOH HOH A . H 3 HOH 38 485 485 HOH HOH A . H 3 HOH 39 486 486 HOH HOH A . H 3 HOH 40 507 507 HOH HOH A . H 3 HOH 41 509 509 HOH HOH A . H 3 HOH 42 517 517 HOH HOH A . H 3 HOH 43 518 518 HOH HOH A . H 3 HOH 44 519 519 HOH HOH A . H 3 HOH 45 520 520 HOH HOH A . H 3 HOH 46 528 528 HOH HOH A . H 3 HOH 47 534 534 HOH HOH A . H 3 HOH 48 537 537 HOH HOH A . H 3 HOH 49 548 548 HOH HOH A . H 3 HOH 50 557 557 HOH HOH A . H 3 HOH 51 559 559 HOH HOH A . H 3 HOH 52 575 575 HOH HOH A . H 3 HOH 53 578 578 HOH HOH A . H 3 HOH 54 588 588 HOH HOH A . H 3 HOH 55 594 594 HOH HOH A . H 3 HOH 56 599 599 HOH HOH A . H 3 HOH 57 606 606 HOH HOH A . H 3 HOH 58 609 609 HOH HOH A . H 3 HOH 59 620 620 HOH HOH A . H 3 HOH 60 621 621 HOH HOH A . H 3 HOH 61 630 630 HOH HOH A . H 3 HOH 62 631 631 HOH HOH A . I 3 HOH 1 301 301 HOH HOH B . I 3 HOH 2 309 309 HOH HOH B . I 3 HOH 3 313 313 HOH HOH B . I 3 HOH 4 321 321 HOH HOH B . I 3 HOH 5 323 323 HOH HOH B . I 3 HOH 6 324 324 HOH HOH B . I 3 HOH 7 328 328 HOH HOH B . I 3 HOH 8 334 334 HOH HOH B . I 3 HOH 9 343 343 HOH HOH B . I 3 HOH 10 348 348 HOH HOH B . I 3 HOH 11 349 349 HOH HOH B . I 3 HOH 12 356 356 HOH HOH B . I 3 HOH 13 360 360 HOH HOH B . I 3 HOH 14 363 363 HOH HOH B . I 3 HOH 15 364 364 HOH HOH B . I 3 HOH 16 366 366 HOH HOH B . I 3 HOH 17 370 370 HOH HOH B . I 3 HOH 18 372 372 HOH HOH B . I 3 HOH 19 375 375 HOH HOH B . I 3 HOH 20 376 376 HOH HOH B . I 3 HOH 21 377 377 HOH HOH B . I 3 HOH 22 380 380 HOH HOH B . I 3 HOH 23 393 393 HOH HOH B . I 3 HOH 24 399 399 HOH HOH B . I 3 HOH 25 401 401 HOH HOH B . I 3 HOH 26 402 402 HOH HOH B . I 3 HOH 27 405 405 HOH HOH B . I 3 HOH 28 407 407 HOH HOH B . I 3 HOH 29 408 408 HOH HOH B . I 3 HOH 30 415 415 HOH HOH B . I 3 HOH 31 417 417 HOH HOH B . I 3 HOH 32 418 418 HOH HOH B . I 3 HOH 33 421 421 HOH HOH B . I 3 HOH 34 431 431 HOH HOH B . I 3 HOH 35 432 432 HOH HOH B . I 3 HOH 36 436 436 HOH HOH B . I 3 HOH 37 446 446 HOH HOH B . I 3 HOH 38 450 450 HOH HOH B . I 3 HOH 39 457 457 HOH HOH B . I 3 HOH 40 465 465 HOH HOH B . I 3 HOH 41 466 466 HOH HOH B . I 3 HOH 42 474 474 HOH HOH B . I 3 HOH 43 482 482 HOH HOH B . I 3 HOH 44 483 483 HOH HOH B . I 3 HOH 45 488 488 HOH HOH B . I 3 HOH 46 495 495 HOH HOH B . I 3 HOH 47 504 504 HOH HOH B . I 3 HOH 48 505 505 HOH HOH B . I 3 HOH 49 529 529 HOH HOH B . I 3 HOH 50 531 531 HOH HOH B . I 3 HOH 51 541 541 HOH HOH B . I 3 HOH 52 544 544 HOH HOH B . I 3 HOH 53 554 554 HOH HOH B . I 3 HOH 54 555 555 HOH HOH B . I 3 HOH 55 556 556 HOH HOH B . I 3 HOH 56 563 563 HOH HOH B . I 3 HOH 57 568 568 HOH HOH B . I 3 HOH 58 574 574 HOH HOH B . I 3 HOH 59 580 580 HOH HOH B . I 3 HOH 60 604 604 HOH HOH B . I 3 HOH 61 608 608 HOH HOH B . I 3 HOH 62 611 611 HOH HOH B . I 3 HOH 63 615 615 HOH HOH B . J 3 HOH 1 310 310 HOH HOH C . J 3 HOH 2 314 314 HOH HOH C . J 3 HOH 3 318 318 HOH HOH C . J 3 HOH 4 333 333 HOH HOH C . J 3 HOH 5 340 340 HOH HOH C . J 3 HOH 6 347 347 HOH HOH C . J 3 HOH 7 353 353 HOH HOH C . J 3 HOH 8 357 357 HOH HOH C . J 3 HOH 9 368 368 HOH HOH C . J 3 HOH 10 369 369 HOH HOH C . J 3 HOH 11 384 384 HOH HOH C . J 3 HOH 12 391 391 HOH HOH C . J 3 HOH 13 394 394 HOH HOH C . J 3 HOH 14 406 406 HOH HOH C . J 3 HOH 15 412 412 HOH HOH C . J 3 HOH 16 413 413 HOH HOH C . J 3 HOH 17 416 416 HOH HOH C . J 3 HOH 18 424 424 HOH HOH C . J 3 HOH 19 430 430 HOH HOH C . J 3 HOH 20 439 439 HOH HOH C . J 3 HOH 21 460 460 HOH HOH C . J 3 HOH 22 471 471 HOH HOH C . J 3 HOH 23 473 473 HOH HOH C . J 3 HOH 24 477 477 HOH HOH C . J 3 HOH 25 479 479 HOH HOH C . J 3 HOH 26 481 481 HOH HOH C . J 3 HOH 27 487 487 HOH HOH C . J 3 HOH 28 492 492 HOH HOH C . J 3 HOH 29 506 506 HOH HOH C . J 3 HOH 30 511 511 HOH HOH C . J 3 HOH 31 513 513 HOH HOH C . J 3 HOH 32 521 521 HOH HOH C . J 3 HOH 33 522 522 HOH HOH C . J 3 HOH 34 527 527 HOH HOH C . J 3 HOH 35 530 530 HOH HOH C . J 3 HOH 36 538 538 HOH HOH C . J 3 HOH 37 540 540 HOH HOH C . J 3 HOH 38 553 553 HOH HOH C . J 3 HOH 39 562 562 HOH HOH C . J 3 HOH 40 566 566 HOH HOH C . J 3 HOH 41 572 572 HOH HOH C . J 3 HOH 42 584 584 HOH HOH C . J 3 HOH 43 586 586 HOH HOH C . J 3 HOH 44 587 587 HOH HOH C . J 3 HOH 45 589 589 HOH HOH C . J 3 HOH 46 591 591 HOH HOH C . J 3 HOH 47 597 597 HOH HOH C . J 3 HOH 48 603 603 HOH HOH C . J 3 HOH 49 607 607 HOH HOH C . J 3 HOH 50 610 610 HOH HOH C . J 3 HOH 51 612 612 HOH HOH C . J 3 HOH 52 613 613 HOH HOH C . J 3 HOH 53 616 616 HOH HOH C . J 3 HOH 54 618 618 HOH HOH C . J 3 HOH 55 622 622 HOH HOH C . J 3 HOH 56 624 624 HOH HOH C . J 3 HOH 57 626 626 HOH HOH C . J 3 HOH 58 632 632 HOH HOH C . K 3 HOH 1 305 305 HOH HOH D . K 3 HOH 2 311 311 HOH HOH D . K 3 HOH 3 312 312 HOH HOH D . K 3 HOH 4 316 316 HOH HOH D . K 3 HOH 5 317 317 HOH HOH D . K 3 HOH 6 320 320 HOH HOH D . K 3 HOH 7 322 322 HOH HOH D . K 3 HOH 8 325 325 HOH HOH D . K 3 HOH 9 338 338 HOH HOH D . K 3 HOH 10 339 339 HOH HOH D . K 3 HOH 11 345 345 HOH HOH D . K 3 HOH 12 350 350 HOH HOH D . K 3 HOH 13 352 352 HOH HOH D . K 3 HOH 14 354 354 HOH HOH D . K 3 HOH 15 358 358 HOH HOH D . K 3 HOH 16 362 362 HOH HOH D . K 3 HOH 17 367 367 HOH HOH D . K 3 HOH 18 371 371 HOH HOH D . K 3 HOH 19 373 373 HOH HOH D . K 3 HOH 20 379 379 HOH HOH D . K 3 HOH 21 381 381 HOH HOH D . K 3 HOH 22 385 385 HOH HOH D . K 3 HOH 23 389 389 HOH HOH D . K 3 HOH 24 390 390 HOH HOH D . K 3 HOH 25 392 392 HOH HOH D . K 3 HOH 26 395 395 HOH HOH D . K 3 HOH 27 396 396 HOH HOH D . K 3 HOH 28 397 397 HOH HOH D . K 3 HOH 29 403 403 HOH HOH D . K 3 HOH 30 404 404 HOH HOH D . K 3 HOH 31 409 409 HOH HOH D . K 3 HOH 32 410 410 HOH HOH D . K 3 HOH 33 423 423 HOH HOH D . K 3 HOH 34 425 425 HOH HOH D . K 3 HOH 35 427 427 HOH HOH D . K 3 HOH 36 429 429 HOH HOH D . K 3 HOH 37 433 433 HOH HOH D . K 3 HOH 38 443 443 HOH HOH D . K 3 HOH 39 444 444 HOH HOH D . K 3 HOH 40 448 448 HOH HOH D . K 3 HOH 41 451 451 HOH HOH D . K 3 HOH 42 455 455 HOH HOH D . K 3 HOH 43 456 456 HOH HOH D . K 3 HOH 44 458 458 HOH HOH D . K 3 HOH 45 459 459 HOH HOH D . K 3 HOH 46 472 472 HOH HOH D . K 3 HOH 47 498 498 HOH HOH D . K 3 HOH 48 499 499 HOH HOH D . K 3 HOH 49 501 501 HOH HOH D . K 3 HOH 50 503 503 HOH HOH D . K 3 HOH 51 512 512 HOH HOH D . K 3 HOH 52 516 516 HOH HOH D . K 3 HOH 53 524 524 HOH HOH D . K 3 HOH 54 525 525 HOH HOH D . K 3 HOH 55 533 533 HOH HOH D . K 3 HOH 56 539 539 HOH HOH D . K 3 HOH 57 543 543 HOH HOH D . K 3 HOH 58 545 545 HOH HOH D . K 3 HOH 59 560 560 HOH HOH D . K 3 HOH 60 561 561 HOH HOH D . K 3 HOH 61 569 569 HOH HOH D . K 3 HOH 62 570 570 HOH HOH D . K 3 HOH 63 576 576 HOH HOH D . K 3 HOH 64 581 581 HOH HOH D . K 3 HOH 65 582 582 HOH HOH D . K 3 HOH 66 593 593 HOH HOH D . K 3 HOH 67 595 595 HOH HOH D . L 3 HOH 1 302 302 HOH HOH E . L 3 HOH 2 319 319 HOH HOH E . L 3 HOH 3 336 336 HOH HOH E . L 3 HOH 4 386 386 HOH HOH E . L 3 HOH 5 411 411 HOH HOH E . L 3 HOH 6 414 414 HOH HOH E . L 3 HOH 7 449 449 HOH HOH E . L 3 HOH 8 452 452 HOH HOH E . L 3 HOH 9 454 454 HOH HOH E . L 3 HOH 10 461 461 HOH HOH E . L 3 HOH 11 468 468 HOH HOH E . L 3 HOH 12 475 475 HOH HOH E . L 3 HOH 13 489 489 HOH HOH E . L 3 HOH 14 494 494 HOH HOH E . L 3 HOH 15 496 496 HOH HOH E . L 3 HOH 16 497 497 HOH HOH E . L 3 HOH 17 515 515 HOH HOH E . L 3 HOH 18 523 523 HOH HOH E . L 3 HOH 19 526 526 HOH HOH E . L 3 HOH 20 546 546 HOH HOH E . L 3 HOH 21 547 547 HOH HOH E . L 3 HOH 22 549 549 HOH HOH E . L 3 HOH 23 551 551 HOH HOH E . L 3 HOH 24 558 558 HOH HOH E . L 3 HOH 25 571 571 HOH HOH E . L 3 HOH 26 577 577 HOH HOH E . L 3 HOH 27 579 579 HOH HOH E . L 3 HOH 28 583 583 HOH HOH E . L 3 HOH 29 585 585 HOH HOH E . L 3 HOH 30 590 590 HOH HOH E . L 3 HOH 31 592 592 HOH HOH E . L 3 HOH 32 596 596 HOH HOH E . L 3 HOH 33 598 598 HOH HOH E . L 3 HOH 34 602 602 HOH HOH E . L 3 HOH 35 617 617 HOH HOH E . L 3 HOH 36 625 625 HOH HOH E . L 3 HOH 37 627 627 HOH HOH E . L 3 HOH 38 628 628 HOH HOH E . L 3 HOH 39 629 629 HOH HOH E . M 3 HOH 1 306 306 HOH HOH F . M 3 HOH 2 307 307 HOH HOH F . M 3 HOH 3 315 315 HOH HOH F . M 3 HOH 4 329 329 HOH HOH F . M 3 HOH 5 344 344 HOH HOH F . M 3 HOH 6 355 355 HOH HOH F . M 3 HOH 7 382 382 HOH HOH F . M 3 HOH 8 419 419 HOH HOH F . M 3 HOH 9 428 428 HOH HOH F . M 3 HOH 10 434 434 HOH HOH F . M 3 HOH 11 435 435 HOH HOH F . M 3 HOH 12 437 437 HOH HOH F . M 3 HOH 13 441 441 HOH HOH F . M 3 HOH 14 445 445 HOH HOH F . M 3 HOH 15 447 447 HOH HOH F . M 3 HOH 16 453 453 HOH HOH F . M 3 HOH 17 463 463 HOH HOH F . M 3 HOH 18 467 467 HOH HOH F . M 3 HOH 19 469 469 HOH HOH F . M 3 HOH 20 490 490 HOH HOH F . M 3 HOH 21 491 491 HOH HOH F . M 3 HOH 22 493 493 HOH HOH F . M 3 HOH 23 500 500 HOH HOH F . M 3 HOH 24 502 502 HOH HOH F . M 3 HOH 25 508 508 HOH HOH F . M 3 HOH 26 510 510 HOH HOH F . M 3 HOH 27 514 514 HOH HOH F . M 3 HOH 28 532 532 HOH HOH F . M 3 HOH 29 535 535 HOH HOH F . M 3 HOH 30 536 536 HOH HOH F . M 3 HOH 31 542 542 HOH HOH F . M 3 HOH 32 550 550 HOH HOH F . M 3 HOH 33 552 552 HOH HOH F . M 3 HOH 34 564 564 HOH HOH F . M 3 HOH 35 565 565 HOH HOH F . M 3 HOH 36 567 567 HOH HOH F . M 3 HOH 37 573 573 HOH HOH F . M 3 HOH 38 600 600 HOH HOH F . M 3 HOH 39 601 601 HOH HOH F . M 3 HOH 40 605 605 HOH HOH F . M 3 HOH 41 614 614 HOH HOH F . M 3 HOH 42 619 619 HOH HOH F . M 3 HOH 43 623 623 HOH HOH F . M 3 HOH 44 633 633 HOH HOH F . M 3 HOH 45 634 634 HOH HOH F . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 CNS refinement 1.0 ? 4 # _cell.entry_id 1I2Y _cell.length_a 30.53 _cell.length_b 45.22 _cell.length_c 162.02 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1I2Y _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1I2Y _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.66 _exptl_crystal.density_percent_sol 53.77 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'spermine, MPD. pH 6.0, VAPOR DIFFUSION, SITTING DROP at 298' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 spermine ? ? ? 1 2 1 MPD ? ? ? 1 3 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1998-01-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 5ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 5ID-B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 1I2Y _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 1.66 _reflns.number_obs 26418 _reflns.number_all 26418 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1I2Y _refine.ls_number_reflns_obs 26418 _refine.ls_number_reflns_all 26418 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 10 _refine.ls_d_res_high 1.66 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.217 _refine.ls_R_factor_R_free 0.248 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.8 _refine.ls_number_reflns_R_free 2335 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method througout _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1380 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 334 _refine_hist.number_atoms_total 1728 _refine_hist.d_res_high 1.66 _refine_hist.d_res_low 10 # _database_PDB_matrix.entry_id 1I2Y _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1I2Y _struct.title '1.66 A STRUCTURE OF A-DUPLEX WITH BULGED ADENOSINE, SPERMINE FORM' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1I2Y _struct_keywords.pdbx_keywords 'DNA-RNA HYBRID' _struct_keywords.text 'adenine bulge, A-type NA, DNA/RNA hybrid, DNA-RNA HYBRID' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1I2Y _struct_ref.pdbx_db_accession 1I2Y _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1I2Y A 1 ? 11 ? 1I2Y 1 ? 11 ? 1 11 2 1 1I2Y B 1 ? 11 ? 1I2Y 21 ? 31 ? 21 31 3 1 1I2Y C 1 ? 11 ? 1I2Y 101 ? 111 ? 101 111 4 1 1I2Y D 1 ? 11 ? 1I2Y 121 ? 131 ? 121 131 5 1 1I2Y E 1 ? 11 ? 1I2Y 201 ? 211 ? 201 211 6 1 1I2Y F 1 ? 11 ? 1I2Y 221 ? 231 ? 221 231 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 3 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,H,I 2 1 C,D,G,J,K 3 1 E,F,L,M # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? 3 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B U 11 O2 ? ? A G 1 B U 31 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog2 hydrog ? ? A G 1 O6 ? ? ? 1_555 B U 11 N3 ? ? A G 1 B U 31 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 2 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 2 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 2 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 3 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 3 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 3 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 4 B DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 4 B DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 5 B DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 5 B DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 6 B DT 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 6 B DT 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 7 B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 7 B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 9 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 9 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 9 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 10 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 10 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 10 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 11 N3 ? ? ? 1_555 B G 1 O6 ? ? A U 11 B G 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog24 hydrog ? ? A U 11 O2 ? ? ? 1_555 B G 1 N1 ? ? A U 11 B G 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog25 hydrog ? ? C G 1 N1 ? ? ? 1_555 D U 11 O2 ? ? C G 101 D U 131 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog26 hydrog ? ? C G 1 O6 ? ? ? 1_555 D U 11 N3 ? ? C G 101 D U 131 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog27 hydrog ? ? C C 2 N3 ? ? ? 1_555 D G 10 N1 ? ? C C 102 D G 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C C 2 N4 ? ? ? 1_555 D G 10 O6 ? ? C C 102 D G 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C C 2 O2 ? ? ? 1_555 D G 10 N2 ? ? C C 102 D G 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C G 3 N1 ? ? ? 1_555 D C 9 N3 ? ? C G 103 D C 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C G 3 N2 ? ? ? 1_555 D C 9 O2 ? ? C G 103 D C 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C G 3 O6 ? ? ? 1_555 D C 9 N4 ? ? C G 103 D C 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DA 4 N1 ? ? ? 1_555 D DT 7 N3 ? ? C DA 104 D DT 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DA 4 N6 ? ? ? 1_555 D DT 7 O4 ? ? C DA 104 D DT 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DT 5 N3 ? ? ? 1_555 D DA 6 N1 ? ? C DT 105 D DA 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DT 5 O4 ? ? ? 1_555 D DA 6 N6 ? ? C DT 105 D DA 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DA 6 N1 ? ? ? 1_555 D DT 5 N3 ? ? C DA 106 D DT 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DA 6 N6 ? ? ? 1_555 D DT 5 O4 ? ? C DA 106 D DT 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DT 7 N3 ? ? ? 1_555 D DA 4 N1 ? ? C DT 107 D DA 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DT 7 O4 ? ? ? 1_555 D DA 4 N6 ? ? C DT 107 D DA 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C C 9 N3 ? ? ? 1_555 D G 3 N1 ? ? C C 109 D G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C C 9 N4 ? ? ? 1_555 D G 3 O6 ? ? C C 109 D G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C C 9 O2 ? ? ? 1_555 D G 3 N2 ? ? C C 109 D G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C G 10 N1 ? ? ? 1_555 D C 2 N3 ? ? C G 110 D C 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C G 10 N2 ? ? ? 1_555 D C 2 O2 ? ? C G 110 D C 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C G 10 O6 ? ? ? 1_555 D C 2 N4 ? ? C G 110 D C 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C U 11 N3 ? ? ? 1_555 D G 1 O6 ? ? C U 111 D G 121 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog48 hydrog ? ? C U 11 O2 ? ? ? 1_555 D G 1 N1 ? ? C U 111 D G 121 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog49 hydrog ? ? E G 1 N1 ? ? ? 1_555 F U 11 O2 ? ? E G 201 F U 231 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog50 hydrog ? ? E G 1 O6 ? ? ? 1_555 F U 11 N3 ? ? E G 201 F U 231 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog51 hydrog ? ? E C 2 N3 ? ? ? 1_555 F G 10 N1 ? ? E C 202 F G 230 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? E C 2 N4 ? ? ? 1_555 F G 10 O6 ? ? E C 202 F G 230 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? E C 2 O2 ? ? ? 1_555 F G 10 N2 ? ? E C 202 F G 230 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? E G 3 N1 ? ? ? 1_555 F C 9 N3 ? ? E G 203 F C 229 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? E G 3 N2 ? ? ? 1_555 F C 9 O2 ? ? E G 203 F C 229 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? E G 3 O6 ? ? ? 1_555 F C 9 N4 ? ? E G 203 F C 229 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? E DA 4 N1 ? ? ? 1_555 F DT 7 N3 ? ? E DA 204 F DT 227 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? E DA 4 N6 ? ? ? 1_555 F DT 7 O4 ? ? E DA 204 F DT 227 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? E DT 5 N3 ? ? ? 1_555 F DA 6 N1 ? ? E DT 205 F DA 226 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? E DT 5 O4 ? ? ? 1_555 F DA 6 N6 ? ? E DT 205 F DA 226 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? E DA 6 N1 ? ? ? 1_555 F DT 5 N3 ? ? E DA 206 F DT 225 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? E DA 6 N6 ? ? ? 1_555 F DT 5 O4 ? ? E DA 206 F DT 225 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? E DT 7 N3 ? ? ? 1_555 F DA 4 N1 ? ? E DT 207 F DA 224 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? E DT 7 O4 ? ? ? 1_555 F DA 4 N6 ? ? E DT 207 F DA 224 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? E C 9 N3 ? ? ? 1_555 F G 3 N1 ? ? E C 209 F G 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? E C 9 N4 ? ? ? 1_555 F G 3 O6 ? ? E C 209 F G 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? E C 9 O2 ? ? ? 1_555 F G 3 N2 ? ? E C 209 F G 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? E G 10 N1 ? ? ? 1_555 F C 2 N3 ? ? E G 210 F C 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? E G 10 N2 ? ? ? 1_555 F C 2 O2 ? ? E G 210 F C 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? E G 10 O6 ? ? ? 1_555 F C 2 N4 ? ? E G 210 F C 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? E U 11 N3 ? ? ? 1_555 F G 1 O6 ? ? E U 211 F G 221 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog72 hydrog ? ? E U 11 O2 ? ? ? 1_555 F G 1 N1 ? ? E U 211 F G 221 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id D _struct_site.pdbx_auth_comp_id SPM _struct_site.pdbx_auth_seq_id 300 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 11 _struct_site.details 'BINDING SITE FOR RESIDUE SPM D 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 G A 1 ? G A 1 . ? 1_555 ? 2 AC1 11 C A 2 ? C A 2 . ? 1_555 ? 3 AC1 11 G B 10 ? G B 30 . ? 1_555 ? 4 AC1 11 U B 11 ? U B 31 . ? 1_555 ? 5 AC1 11 U B 11 ? U B 31 . ? 3_655 ? 6 AC1 11 HOH I . ? HOH B 399 . ? 1_555 ? 7 AC1 11 G C 1 ? G C 101 . ? 1_555 ? 8 AC1 11 HOH J . ? HOH C 310 . ? 3_655 ? 9 AC1 11 C D 9 ? C D 129 . ? 1_555 ? 10 AC1 11 G D 10 ? G D 130 . ? 1_555 ? 11 AC1 11 U D 11 ? U D 131 . ? 1_555 ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N9 _pdbx_validate_rmsd_angle.auth_asym_id_1 F _pdbx_validate_rmsd_angle.auth_comp_id_1 A _pdbx_validate_rmsd_angle.auth_seq_id_1 228 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 F _pdbx_validate_rmsd_angle.auth_comp_id_2 A _pdbx_validate_rmsd_angle.auth_seq_id_2 228 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "C2'" _pdbx_validate_rmsd_angle.auth_asym_id_3 F _pdbx_validate_rmsd_angle.auth_comp_id_3 A _pdbx_validate_rmsd_angle.auth_seq_id_3 228 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.06 _pdbx_validate_rmsd_angle.angle_target_value 114.00 _pdbx_validate_rmsd_angle.angle_deviation 9.06 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA A 4 ? ? 0.060 'SIDE CHAIN' 2 1 G B 30 ? ? 0.054 'SIDE CHAIN' 3 1 G D 130 ? ? 0.055 'SIDE CHAIN' 4 1 G F 230 ? ? 0.065 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 DA OP3 O N N 73 DA P P N N 74 DA OP1 O N N 75 DA OP2 O N N 76 DA "O5'" O N N 77 DA "C5'" C N N 78 DA "C4'" C N R 79 DA "O4'" O N N 80 DA "C3'" C N S 81 DA "O3'" O N N 82 DA "C2'" C N N 83 DA "C1'" C N R 84 DA N9 N Y N 85 DA C8 C Y N 86 DA N7 N Y N 87 DA C5 C Y N 88 DA C6 C Y N 89 DA N6 N N N 90 DA N1 N Y N 91 DA C2 C Y N 92 DA N3 N Y N 93 DA C4 C Y N 94 DA HOP3 H N N 95 DA HOP2 H N N 96 DA "H5'" H N N 97 DA "H5''" H N N 98 DA "H4'" H N N 99 DA "H3'" H N N 100 DA "HO3'" H N N 101 DA "H2'" H N N 102 DA "H2''" H N N 103 DA "H1'" H N N 104 DA H8 H N N 105 DA H61 H N N 106 DA H62 H N N 107 DA H2 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 G OP3 O N N 145 G P P N N 146 G OP1 O N N 147 G OP2 O N N 148 G "O5'" O N N 149 G "C5'" C N N 150 G "C4'" C N R 151 G "O4'" O N N 152 G "C3'" C N S 153 G "O3'" O N N 154 G "C2'" C N R 155 G "O2'" O N N 156 G "C1'" C N R 157 G N9 N Y N 158 G C8 C Y N 159 G N7 N Y N 160 G C5 C Y N 161 G C6 C N N 162 G O6 O N N 163 G N1 N N N 164 G C2 C N N 165 G N2 N N N 166 G N3 N N N 167 G C4 C Y N 168 G HOP3 H N N 169 G HOP2 H N N 170 G "H5'" H N N 171 G "H5''" H N N 172 G "H4'" H N N 173 G "H3'" H N N 174 G "HO3'" H N N 175 G "H2'" H N N 176 G "HO2'" H N N 177 G "H1'" H N N 178 G H8 H N N 179 G H1 H N N 180 G H21 H N N 181 G H22 H N N 182 HOH O O N N 183 HOH H1 H N N 184 HOH H2 H N N 185 SPM N1 N N N 186 SPM C2 C N N 187 SPM C3 C N N 188 SPM C4 C N N 189 SPM N5 N N N 190 SPM C6 C N N 191 SPM C7 C N N 192 SPM C8 C N N 193 SPM C9 C N N 194 SPM N10 N N N 195 SPM C11 C N N 196 SPM C12 C N N 197 SPM C13 C N N 198 SPM N14 N N N 199 SPM HN11 H N N 200 SPM HN12 H N N 201 SPM H21 H N N 202 SPM H22 H N N 203 SPM H31 H N N 204 SPM H32 H N N 205 SPM H41 H N N 206 SPM H42 H N N 207 SPM HN5 H N N 208 SPM H61 H N N 209 SPM H62 H N N 210 SPM H71 H N N 211 SPM H72 H N N 212 SPM H81 H N N 213 SPM H82 H N N 214 SPM H91 H N N 215 SPM H92 H N N 216 SPM HN0 H N N 217 SPM H111 H N N 218 SPM H112 H N N 219 SPM H121 H N N 220 SPM H122 H N N 221 SPM H131 H N N 222 SPM H132 H N N 223 SPM HN41 H N N 224 SPM HN42 H N N 225 U OP3 O N N 226 U P P N N 227 U OP1 O N N 228 U OP2 O N N 229 U "O5'" O N N 230 U "C5'" C N N 231 U "C4'" C N R 232 U "O4'" O N N 233 U "C3'" C N S 234 U "O3'" O N N 235 U "C2'" C N R 236 U "O2'" O N N 237 U "C1'" C N R 238 U N1 N N N 239 U C2 C N N 240 U O2 O N N 241 U N3 N N N 242 U C4 C N N 243 U O4 O N N 244 U C5 C N N 245 U C6 C N N 246 U HOP3 H N N 247 U HOP2 H N N 248 U "H5'" H N N 249 U "H5''" H N N 250 U "H4'" H N N 251 U "H3'" H N N 252 U "HO3'" H N N 253 U "H2'" H N N 254 U "HO2'" H N N 255 U "H1'" H N N 256 U H3 H N N 257 U H5 H N N 258 U H6 H N N 259 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 DA OP3 P sing N N 76 DA OP3 HOP3 sing N N 77 DA P OP1 doub N N 78 DA P OP2 sing N N 79 DA P "O5'" sing N N 80 DA OP2 HOP2 sing N N 81 DA "O5'" "C5'" sing N N 82 DA "C5'" "C4'" sing N N 83 DA "C5'" "H5'" sing N N 84 DA "C5'" "H5''" sing N N 85 DA "C4'" "O4'" sing N N 86 DA "C4'" "C3'" sing N N 87 DA "C4'" "H4'" sing N N 88 DA "O4'" "C1'" sing N N 89 DA "C3'" "O3'" sing N N 90 DA "C3'" "C2'" sing N N 91 DA "C3'" "H3'" sing N N 92 DA "O3'" "HO3'" sing N N 93 DA "C2'" "C1'" sing N N 94 DA "C2'" "H2'" sing N N 95 DA "C2'" "H2''" sing N N 96 DA "C1'" N9 sing N N 97 DA "C1'" "H1'" sing N N 98 DA N9 C8 sing Y N 99 DA N9 C4 sing Y N 100 DA C8 N7 doub Y N 101 DA C8 H8 sing N N 102 DA N7 C5 sing Y N 103 DA C5 C6 sing Y N 104 DA C5 C4 doub Y N 105 DA C6 N6 sing N N 106 DA C6 N1 doub Y N 107 DA N6 H61 sing N N 108 DA N6 H62 sing N N 109 DA N1 C2 sing Y N 110 DA C2 N3 doub Y N 111 DA C2 H2 sing N N 112 DA N3 C4 sing Y N 113 DT OP3 P sing N N 114 DT OP3 HOP3 sing N N 115 DT P OP1 doub N N 116 DT P OP2 sing N N 117 DT P "O5'" sing N N 118 DT OP2 HOP2 sing N N 119 DT "O5'" "C5'" sing N N 120 DT "C5'" "C4'" sing N N 121 DT "C5'" "H5'" sing N N 122 DT "C5'" "H5''" sing N N 123 DT "C4'" "O4'" sing N N 124 DT "C4'" "C3'" sing N N 125 DT "C4'" "H4'" sing N N 126 DT "O4'" "C1'" sing N N 127 DT "C3'" "O3'" sing N N 128 DT "C3'" "C2'" sing N N 129 DT "C3'" "H3'" sing N N 130 DT "O3'" "HO3'" sing N N 131 DT "C2'" "C1'" sing N N 132 DT "C2'" "H2'" sing N N 133 DT "C2'" "H2''" sing N N 134 DT "C1'" N1 sing N N 135 DT "C1'" "H1'" sing N N 136 DT N1 C2 sing N N 137 DT N1 C6 sing N N 138 DT C2 O2 doub N N 139 DT C2 N3 sing N N 140 DT N3 C4 sing N N 141 DT N3 H3 sing N N 142 DT C4 O4 doub N N 143 DT C4 C5 sing N N 144 DT C5 C7 sing N N 145 DT C5 C6 doub N N 146 DT C7 H71 sing N N 147 DT C7 H72 sing N N 148 DT C7 H73 sing N N 149 DT C6 H6 sing N N 150 G OP3 P sing N N 151 G OP3 HOP3 sing N N 152 G P OP1 doub N N 153 G P OP2 sing N N 154 G P "O5'" sing N N 155 G OP2 HOP2 sing N N 156 G "O5'" "C5'" sing N N 157 G "C5'" "C4'" sing N N 158 G "C5'" "H5'" sing N N 159 G "C5'" "H5''" sing N N 160 G "C4'" "O4'" sing N N 161 G "C4'" "C3'" sing N N 162 G "C4'" "H4'" sing N N 163 G "O4'" "C1'" sing N N 164 G "C3'" "O3'" sing N N 165 G "C3'" "C2'" sing N N 166 G "C3'" "H3'" sing N N 167 G "O3'" "HO3'" sing N N 168 G "C2'" "O2'" sing N N 169 G "C2'" "C1'" sing N N 170 G "C2'" "H2'" sing N N 171 G "O2'" "HO2'" sing N N 172 G "C1'" N9 sing N N 173 G "C1'" "H1'" sing N N 174 G N9 C8 sing Y N 175 G N9 C4 sing Y N 176 G C8 N7 doub Y N 177 G C8 H8 sing N N 178 G N7 C5 sing Y N 179 G C5 C6 sing N N 180 G C5 C4 doub Y N 181 G C6 O6 doub N N 182 G C6 N1 sing N N 183 G N1 C2 sing N N 184 G N1 H1 sing N N 185 G C2 N2 sing N N 186 G C2 N3 doub N N 187 G N2 H21 sing N N 188 G N2 H22 sing N N 189 G N3 C4 sing N N 190 HOH O H1 sing N N 191 HOH O H2 sing N N 192 SPM N1 C2 sing N N 193 SPM N1 HN11 sing N N 194 SPM N1 HN12 sing N N 195 SPM C2 C3 sing N N 196 SPM C2 H21 sing N N 197 SPM C2 H22 sing N N 198 SPM C3 C4 sing N N 199 SPM C3 H31 sing N N 200 SPM C3 H32 sing N N 201 SPM C4 N5 sing N N 202 SPM C4 H41 sing N N 203 SPM C4 H42 sing N N 204 SPM N5 C6 sing N N 205 SPM N5 HN5 sing N N 206 SPM C6 C7 sing N N 207 SPM C6 H61 sing N N 208 SPM C6 H62 sing N N 209 SPM C7 C8 sing N N 210 SPM C7 H71 sing N N 211 SPM C7 H72 sing N N 212 SPM C8 C9 sing N N 213 SPM C8 H81 sing N N 214 SPM C8 H82 sing N N 215 SPM C9 N10 sing N N 216 SPM C9 H91 sing N N 217 SPM C9 H92 sing N N 218 SPM N10 C11 sing N N 219 SPM N10 HN0 sing N N 220 SPM C11 C12 sing N N 221 SPM C11 H111 sing N N 222 SPM C11 H112 sing N N 223 SPM C12 C13 sing N N 224 SPM C12 H121 sing N N 225 SPM C12 H122 sing N N 226 SPM C13 N14 sing N N 227 SPM C13 H131 sing N N 228 SPM C13 H132 sing N N 229 SPM N14 HN41 sing N N 230 SPM N14 HN42 sing N N 231 U OP3 P sing N N 232 U OP3 HOP3 sing N N 233 U P OP1 doub N N 234 U P OP2 sing N N 235 U P "O5'" sing N N 236 U OP2 HOP2 sing N N 237 U "O5'" "C5'" sing N N 238 U "C5'" "C4'" sing N N 239 U "C5'" "H5'" sing N N 240 U "C5'" "H5''" sing N N 241 U "C4'" "O4'" sing N N 242 U "C4'" "C3'" sing N N 243 U "C4'" "H4'" sing N N 244 U "O4'" "C1'" sing N N 245 U "C3'" "O3'" sing N N 246 U "C3'" "C2'" sing N N 247 U "C3'" "H3'" sing N N 248 U "O3'" "HO3'" sing N N 249 U "C2'" "O2'" sing N N 250 U "C2'" "C1'" sing N N 251 U "C2'" "H2'" sing N N 252 U "O2'" "HO2'" sing N N 253 U "C1'" N1 sing N N 254 U "C1'" "H1'" sing N N 255 U N1 C2 sing N N 256 U N1 C6 sing N N 257 U C2 O2 doub N N 258 U C2 N3 sing N N 259 U N3 C4 sing N N 260 U N3 H3 sing N N 261 U C4 O4 doub N N 262 U C4 C5 sing N N 263 U C5 C6 doub N N 264 U C5 H5 sing N N 265 U C6 H6 sing N N 266 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1I2Y 'double helix' 1I2Y 'a-form double helix' 1I2Y 'bulge loop' 1I2Y 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 D G 1 1_555 C U 11 1_555 -2.333 -0.640 0.210 3.947 -9.161 -4.267 1 D_G121:U111_C D 121 ? C 111 ? 28 ? 1 D C 2 1_555 C G 10 1_555 0.060 -0.158 -0.039 9.718 -19.740 0.818 2 D_C122:G110_C D 122 ? C 110 ? 19 1 1 D G 3 1_555 C C 9 1_555 -0.128 -0.199 -0.057 -10.405 -19.384 -1.412 3 D_G123:C109_C D 123 ? C 109 ? 19 1 1 D DA 4 1_555 C DT 7 1_555 -0.099 -0.093 -0.021 -12.983 -10.059 2.125 4 D_DA124:DT107_C D 124 ? C 107 ? 20 1 1 D DT 5 1_555 C DA 6 1_555 0.119 -0.152 0.033 -1.970 -1.983 1.947 5 D_DT125:DA106_C D 125 ? C 106 ? 20 1 1 D DA 6 1_555 C DT 5 1_555 0.153 -0.115 -0.063 1.102 -1.981 0.341 6 D_DA126:DT105_C D 126 ? C 105 ? 20 1 1 D DT 7 1_555 C DA 4 1_555 -0.067 -0.065 -0.051 13.631 -7.428 2.729 7 D_DT127:DA104_C D 127 ? C 104 ? 20 1 1 D C 9 1_555 C G 3 1_555 0.185 -0.068 -0.525 12.407 -13.333 2.922 8 D_C129:G103_C D 129 ? C 103 ? 19 1 1 D G 10 1_555 C C 2 1_555 -0.297 -0.133 -0.069 -7.533 -11.333 0.672 9 D_G130:C102_C D 130 ? C 102 ? 19 1 1 D U 11 1_555 C G 1 1_555 2.363 -0.649 -0.012 -0.281 -11.473 -4.642 10 D_U131:G101_C D 131 ? C 101 ? 28 ? 1 A G 1 1_555 B U 11 1_555 -2.429 -0.630 0.046 0.170 -11.718 -0.794 11 A_G1:U31_B A 1 ? B 31 ? 28 ? 1 A C 2 1_555 B G 10 1_555 0.178 -0.128 0.141 2.837 -14.158 0.381 12 A_C2:G30_B A 2 ? B 30 ? 19 1 1 A G 3 1_555 B C 9 1_555 -0.130 -0.134 -0.035 -9.414 -13.609 -1.042 13 A_G3:C29_B A 3 ? B 29 ? 19 1 1 A DA 4 1_555 B DT 7 1_555 0.039 -0.130 0.116 -7.563 -8.689 6.875 14 A_DA4:DT27_B A 4 ? B 27 ? 20 1 1 A DT 5 1_555 B DA 6 1_555 -0.105 -0.168 -0.038 0.216 -2.801 0.203 15 A_DT5:DA26_B A 5 ? B 26 ? 20 1 1 A DA 6 1_555 B DT 5 1_555 -0.039 -0.100 -0.035 2.316 -4.914 -0.246 16 A_DA6:DT25_B A 6 ? B 25 ? 20 1 1 A DT 7 1_555 B DA 4 1_555 -0.036 -0.107 0.007 13.141 -15.090 4.964 17 A_DT7:DA24_B A 7 ? B 24 ? 20 1 1 A C 9 1_555 B G 3 1_555 0.162 -0.087 -0.187 5.449 -10.586 3.257 18 A_C9:G23_B A 9 ? B 23 ? 19 1 1 A G 10 1_555 B C 2 1_555 -0.315 -0.234 -0.023 -3.959 -18.408 2.302 19 A_G10:C22_B A 10 ? B 22 ? 19 1 1 A U 11 1_555 B G 1 1_555 2.431 -0.717 0.123 -2.735 -15.128 -1.685 20 A_U11:G21_B A 11 ? B 21 ? 28 ? 1 E G 1 1_555 F U 11 1_555 -2.226 -0.609 0.161 0.267 -13.239 -3.557 21 E_G201:U231_F E 201 ? F 231 ? 28 ? 1 E C 2 1_555 F G 10 1_555 0.161 -0.161 -0.024 7.566 -15.222 0.999 22 E_C202:G230_F E 202 ? F 230 ? 19 1 1 E G 3 1_555 F C 9 1_555 -0.289 -0.119 0.077 -6.771 -16.090 -0.098 23 E_G203:C229_F E 203 ? F 229 ? 19 1 1 E DA 4 1_555 F DT 7 1_555 0.273 -0.247 0.047 -10.658 -7.755 0.497 24 E_DA204:DT227_F E 204 ? F 227 ? 20 1 1 E DT 5 1_555 F DA 6 1_555 0.008 -0.156 -0.006 -2.473 -7.295 1.801 25 E_DT205:DA226_F E 205 ? F 226 ? 20 1 1 E DA 6 1_555 F DT 5 1_555 0.157 -0.288 -0.185 3.214 -2.577 3.382 26 E_DA206:DT225_F E 206 ? F 225 ? 20 1 1 E DT 7 1_555 F DA 4 1_555 -0.097 0.035 0.033 15.844 -9.283 5.124 27 E_DT207:DA224_F E 207 ? F 224 ? 20 1 1 E C 9 1_555 F G 3 1_555 0.127 0.024 0.102 10.180 -21.255 0.590 28 E_C209:G223_F E 209 ? F 223 ? 19 1 1 E G 10 1_555 F C 2 1_555 -0.171 -0.026 0.089 -0.190 -17.358 3.926 29 E_G210:C222_F E 210 ? F 222 ? 19 1 1 E U 11 1_555 F G 1 1_555 2.281 -0.583 0.072 2.542 -14.378 -0.825 30 E_U211:G221_F E 211 ? F 221 ? 28 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 D G 1 1_555 C U 11 1_555 D C 2 1_555 C G 10 1_555 -0.014 -1.152 3.125 -1.179 4.727 40.719 -2.127 -0.101 2.978 6.763 1.687 40.997 1 DD_G121C122:G110U111_CC D 121 ? C 111 ? D 122 ? C 110 ? 1 D C 2 1_555 C G 10 1_555 D G 3 1_555 C C 9 1_555 0.002 -1.751 3.507 -0.645 17.678 35.753 -4.542 -0.075 2.413 26.863 0.981 39.762 2 DD_C122G123:C109G110_CC D 122 ? C 110 ? D 123 ? C 109 ? 1 D G 3 1_555 C C 9 1_555 D DA 4 1_555 C DT 7 1_555 -0.963 -1.774 3.217 -1.759 8.302 23.068 -6.480 1.775 2.501 19.916 4.220 24.560 3 DD_G123DA124:DT107C109_CC D 123 ? C 109 ? D 124 ? C 107 ? 1 D DA 4 1_555 C DT 7 1_555 D DT 5 1_555 C DA 6 1_555 -0.295 -0.675 3.107 0.756 7.788 31.806 -2.441 0.644 2.858 13.948 -1.354 32.730 4 DD_DA124DT125:DA106DT107_CC D 124 ? C 107 ? D 125 ? C 106 ? 1 D DT 5 1_555 C DA 6 1_555 D DA 6 1_555 C DT 5 1_555 -0.097 -0.879 3.201 0.203 6.853 34.448 -2.435 0.190 2.976 11.431 -0.339 35.103 5 DD_DT125DA126:DT105DA106_CC D 125 ? C 106 ? D 126 ? C 105 ? 1 D DA 6 1_555 C DT 5 1_555 D DT 7 1_555 C DA 4 1_555 0.494 -0.877 3.023 -0.629 4.671 28.057 -2.750 -1.135 2.831 9.550 1.287 28.442 6 DD_DA126DT127:DA104DT105_CC D 126 ? C 105 ? D 127 ? C 104 ? 1 D DT 7 1_555 C DA 4 1_555 D C 9 1_555 C G 3 1_555 -2.200 -0.760 3.151 -0.573 10.077 50.713 -1.520 2.489 2.983 11.633 0.662 51.642 7 DD_DT127C129:G103DA104_CC D 127 ? C 104 ? D 129 ? C 103 ? 1 D C 9 1_555 C G 3 1_555 D G 10 1_555 C C 2 1_555 -0.933 -2.078 3.735 -3.383 12.329 30.599 -5.810 1.044 2.797 22.185 6.088 33.104 8 DD_C129G130:C102G103_CC D 129 ? C 103 ? D 130 ? C 102 ? 1 D G 10 1_555 C C 2 1_555 D U 11 1_555 C G 1 1_555 -0.032 -1.119 3.040 1.482 2.299 42.650 -1.747 0.180 2.976 3.157 -2.034 42.733 9 DD_G130U131:G101C102_CC D 130 ? C 102 ? D 131 ? C 101 ? 1 D U 11 1_555 C G 1 1_555 A G 1 1_555 B U 11 1_555 0.348 -4.266 3.214 0.408 10.796 -36.441 4.950 0.596 4.259 -16.814 0.635 -37.956 10 DA_U131G1:U31G101_BC D 131 ? C 101 ? A 1 ? B 31 ? 1 A G 1 1_555 B U 11 1_555 A C 2 1_555 B G 10 1_555 -0.051 -1.148 3.138 -1.532 1.063 42.989 -1.665 -0.075 3.110 1.450 2.090 43.027 11 AA_G1C2:G30U31_BB A 1 ? B 31 ? A 2 ? B 30 ? 1 A C 2 1_555 B G 10 1_555 A G 3 1_555 B C 9 1_555 0.394 -2.013 3.476 2.382 9.384 31.184 -5.184 -0.295 2.790 16.951 -4.304 32.616 12 AA_C2G3:C29G30_BB A 2 ? B 30 ? A 3 ? B 29 ? 1 A G 3 1_555 B C 9 1_555 A DA 4 1_555 B DT 7 1_555 -1.338 -2.104 3.102 -2.682 5.899 20.123 -7.915 2.659 2.543 16.343 7.430 21.130 13 AA_G3DA4:DT27C29_BB A 3 ? B 29 ? A 4 ? B 27 ? 1 A DA 4 1_555 B DT 7 1_555 A DT 5 1_555 B DA 6 1_555 -0.873 -0.859 3.152 1.817 4.918 31.131 -2.436 1.921 2.931 9.083 -3.357 31.558 14 AA_DA4DT5:DA26DT27_BB A 4 ? B 27 ? A 5 ? B 26 ? 1 A DT 5 1_555 B DA 6 1_555 A DA 6 1_555 B DT 5 1_555 -0.151 -0.743 3.206 -0.847 4.948 33.363 -2.056 0.127 3.070 8.558 1.465 33.727 15 AA_DT5DA6:DT25DA26_BB A 5 ? B 26 ? A 6 ? B 25 ? 1 A DA 6 1_555 B DT 5 1_555 A DT 7 1_555 B DA 4 1_555 0.674 -0.812 3.063 -2.368 8.250 28.928 -3.068 -1.729 2.673 16.074 4.614 30.149 16 AA_DA6DT7:DA24DT25_BB A 6 ? B 25 ? A 7 ? B 24 ? 1 A DT 7 1_555 B DA 4 1_555 A C 9 1_555 B G 3 1_555 -2.168 -0.871 3.331 -2.226 12.591 51.153 -1.807 2.300 3.135 14.328 2.533 52.622 17 AA_DT7C9:G23DA24_BB A 7 ? B 24 ? A 9 ? B 23 ? 1 A C 9 1_555 B G 3 1_555 A G 10 1_555 B C 2 1_555 -0.767 -1.975 3.405 -1.269 13.845 28.937 -5.864 1.180 2.277 25.903 2.375 32.039 18 AA_C9G10:C22G23_BB A 9 ? B 23 ? A 10 ? B 22 ? 1 A G 10 1_555 B C 2 1_555 A U 11 1_555 B G 1 1_555 -0.072 -1.401 3.201 -0.622 2.670 42.598 -2.183 0.039 3.113 3.671 0.856 42.682 19 AA_G10U11:G21C22_BB A 10 ? B 22 ? A 11 ? B 21 ? 1 A U 11 1_555 B G 1 1_555 E G 1 1_555 F U 11 1_555 0.035 -4.047 2.922 1.064 17.000 -32.836 3.649 0.228 4.424 -27.861 1.744 -36.883 20 AE_U11G201:U231G21_FB A 11 ? B 21 ? E 201 ? F 231 ? 1 E G 1 1_555 F U 11 1_555 E C 2 1_555 F G 10 1_555 0.304 -0.794 3.123 1.132 3.056 40.287 -1.474 -0.319 3.064 4.429 -1.640 40.413 21 EE_G201C202:G230U231_FF E 201 ? F 231 ? E 202 ? F 230 ? 1 E C 2 1_555 F G 10 1_555 E G 3 1_555 F C 9 1_555 0.601 -1.874 3.447 -0.571 10.884 35.007 -4.435 -1.032 2.752 17.574 0.922 36.614 22 EE_C202G203:C229G230_FF E 202 ? F 230 ? E 203 ? F 229 ? 1 E G 3 1_555 F C 9 1_555 E DA 4 1_555 F DT 7 1_555 -0.961 -1.808 3.236 0.328 4.264 28.784 -4.486 1.981 2.932 8.517 -0.656 29.093 23 EE_G203DA204:DT227C229_FF E 203 ? F 229 ? E 204 ? F 227 ? 1 E DA 4 1_555 F DT 7 1_555 E DT 5 1_555 F DA 6 1_555 -0.478 -0.880 3.127 0.671 5.664 29.049 -2.837 1.069 2.895 11.157 -1.322 29.592 24 EE_DA204DT205:DA226DT227_FF E 204 ? F 227 ? E 205 ? F 226 ? 1 E DT 5 1_555 F DA 6 1_555 E DA 6 1_555 F DT 5 1_555 -0.209 -0.749 3.100 0.646 6.413 34.800 -2.110 0.433 2.916 10.609 -1.070 35.374 25 EE_DT205DA206:DT225DA226_FF E 205 ? F 226 ? E 206 ? F 225 ? 1 E DA 6 1_555 F DT 5 1_555 E DT 7 1_555 F DA 4 1_555 0.636 -0.627 3.022 -3.303 5.214 28.432 -2.273 -1.916 2.775 10.459 6.625 29.081 26 EE_DA206DT207:DA224DT225_FF E 206 ? F 225 ? E 207 ? F 224 ? 1 E DT 7 1_555 F DA 4 1_555 E C 9 1_555 F G 3 1_555 1.433 -2.328 3.193 2.276 10.735 20.737 -8.751 -2.889 1.913 27.479 -5.827 23.433 27 EE_DT207C209:G223DA224_FF E 207 ? F 224 ? E 209 ? F 223 ? 1 E C 9 1_555 F G 3 1_555 E G 10 1_555 F C 2 1_555 -0.438 -2.167 3.257 -2.617 16.478 27.211 -6.434 0.404 1.728 31.543 5.010 31.836 28 EE_C209G210:C222G223_FF E 209 ? F 223 ? E 210 ? F 222 ? 1 E G 10 1_555 F C 2 1_555 E U 11 1_555 F G 1 1_555 -0.193 -1.129 3.072 0.761 6.196 43.523 -2.046 0.323 2.889 8.305 -1.020 43.947 29 EE_G210U211:G221C222_FF E 210 ? F 222 ? E 211 ? F 221 ? # _atom_sites.entry_id 1I2Y _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.032755 _atom_sites.fract_transf_matrix[1][2] -0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022114 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006172 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_