data_1I7J # _entry.id 1I7J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1I7J pdb_00001i7j 10.2210/pdb1i7j/pdb NDB AR0031 ? ? RCSB RCSB013002 ? ? WWPDB D_1000013002 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 310D _pdbx_database_related.details ;310D contains the same 2'-O-methylated RNA, at room temperature and higher hydration state. ; _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1I7J _pdbx_database_status.recvd_initial_deposition_date 2001-03-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Adamiak, D.A.' 1 'Rypniewski, W.R.' 2 'Milecki, J.' 3 'Adamiak, R.W.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;The 1.19 A X-ray structure of 2'-O-Me(CGCGCG)(2) duplex shows dehydrated RNA with 2-methyl-2,4-pentanediol in the minor groove. ; 'Nucleic Acids Res.' 29 4144 4153 2001 NARHAD UK 0305-1048 0389 ? 11600703 10.1093/nar/29.20.4144 1 ;CRYSTAL STRUCTURE OF 2'-O-ME(CGCGCG)2: AN RNA DUPLEX AT 1.3 A RESOLUTION. HYDRATION PATTERN OF 2'-O-METHYLATED RNA ; 'Nucleic Acids Res.' 25 4599 4607 1997 NARHAD UK 0305-1048 0389 ? ? 10.1093/nar/25.22.4599 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Adamiak, D.A.' 1 ? primary 'Rypniewski, W.R.' 2 ? primary 'Milecki, J.' 3 ? primary 'Adamiak, R.W.' 4 ? 1 'Adamiak, D.A.' 5 ? 1 'Milecki, J.' 6 ? 1 'Popenda, W.' 7 ? 1 'Adamiak, R.W.' 8 ? 1 'Dauter, A.' 9 ? 1 'Rypniewski, W.R.' 10 ? # _cell.entry_id 1I7J _cell.length_a 24.805 _cell.length_b 24.805 _cell.length_c 77.372 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1I7J _symmetry.space_group_name_H-M 'P 32 1 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 153 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*(OMC)P*(OMG)P*(OMC)P*(OMG)P*(OMC)P*(OMG))-3'" 1990.361 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 3 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 2 ? ? ? ? 4 water nat water 18.015 65 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(OMC)(OMG)(OMC)(OMG)(OMC)(OMG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 OMC n 1 2 OMG n 1 3 OMC n 1 4 OMG n 1 5 OMC n 1 6 OMG n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1I7J _struct_ref.pdbx_db_accession 1I7J _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1I7J A 1 ? 6 ? 1I7J 1 ? 6 ? 1 6 2 1 1I7J B 1 ? 6 ? 1I7J 1 ? 6 ? 1 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 OMC 'RNA linking' n "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P' 337.223 OMG 'RNA linking' n "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O8 P' 377.247 # _exptl.entry_id 1I7J _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.73 _exptl_crystal.density_percent_sol 38 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;15 mM MgCl2, 1 mM spermine tetrahydrochloride and 30-40% 2-methyl-2,4-pentanediol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MgCl2 ? ? ? 1 2 1 'spermine tetrahydrochloride' ? ? ? 1 3 1 MPD ? ? ? 1 4 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1996-10-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Si _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.900 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE BW7A' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline BW7A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.900 # _reflns.entry_id 1I7J _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 1.19 _reflns.number_obs 8715 _reflns.number_all ? _reflns.percent_possible_obs 95.8 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 23 _reflns.B_iso_Wilson_estimate 13 _reflns.pdbx_redundancy 17 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.19 _reflns_shell.d_res_low 1.21 _reflns_shell.percent_possible_all 94 _reflns_shell.Rmerge_I_obs 0.46 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.pdbx_redundancy 2.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 415 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1I7J _refine.ls_number_reflns_obs 8715 _refine.ls_number_reflns_all 8715 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 20 _refine.ls_d_res_high 1.19 _refine.ls_percent_reflns_obs 95.8 _refine.ls_R_factor_obs 0.155 _refine.ls_R_factor_all 0.155 _refine.ls_R_factor_R_work 0.155 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB 310D' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values CCP4 _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 376 _refine_hist.pdbx_number_atoms_ligand 53 _refine_hist.number_atoms_solvent 81 _refine_hist.number_atoms_total 510 _refine_hist.d_res_high 1.19 _refine_hist.d_res_low 20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_approx_iso_adps 0.068 ? ? ? 'X-RAY DIFFRACTION' ? s_bond_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.047 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.19 _refine_ls_shell.d_res_low 1.21 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.155 _refine_ls_shell.percent_reflns_obs 95.8 _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? # _pdbx_refine.entry_id 1I7J _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.1415 _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 8667 _pdbx_refine.number_reflns_obs_4sig_cutoff ? _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 1I7J _struct.title ;CRYSTAL STRUCTURE OF 2'-O-ME(CGCGCG)2: AN RNA DUPLEX AT 1.19 A RESOLUTION. 2-METHYL-2,4-PENTANEDIOL AND MAGNESIUM BINDING. ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1I7J _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;2'-O-MeRNA duplex, 2-methyl-2, 4-pentanediol, magnesium, groove hydration and binding, RNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 4 ? K N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A OMC 1 "O3'" ? ? ? 1_555 A OMG 2 P ? ? A OMC 1 A OMG 2 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale2 covale both ? A OMG 2 "O3'" ? ? ? 1_555 A OMC 3 P ? ? A OMG 2 A OMC 3 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale3 covale both ? A OMC 3 "O3'" ? ? ? 1_555 A OMG 4 P ? ? A OMC 3 A OMG 4 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale4 covale both ? A OMG 4 "O3'" ? ? ? 1_555 A OMC 5 P ? ? A OMG 4 A OMC 5 1_555 ? ? ? ? ? ? ? 1.624 ? ? covale5 covale both ? A OMC 5 "O3'" ? ? ? 1_555 A OMG 6 P ? ? A OMC 5 A OMG 6 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale6 covale both ? B OMC 1 "O3'" ? ? ? 1_555 B OMG 2 P ? ? B OMC 1 B OMG 2 1_555 ? ? ? ? ? ? ? 1.592 ? ? covale7 covale both ? B OMG 2 "O3'" ? ? ? 1_555 B OMC 3 P ? ? B OMG 2 B OMC 3 1_555 ? ? ? ? ? ? ? 1.588 ? ? covale8 covale both ? B OMC 3 "O3'" ? ? ? 1_555 B OMG 4 P ? ? B OMC 3 B OMG 4 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale9 covale both ? B OMG 4 "O3'" ? ? ? 1_555 B OMC 5 P ? ? B OMG 4 B OMC 5 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale10 covale both ? B OMC 5 "O3'" ? ? ? 1_555 B OMG 6 P ? ? B OMC 5 B OMG 6 1_555 ? ? ? ? ? ? ? 1.611 ? ? metalc1 metalc ? ? A OMG 2 OP1 ? ? ? 1_555 C MG . MG ? ? A OMG 2 A MG 101 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc2 metalc ? ? A OMC 5 OP1 ? ? ? 1_555 D MG . MG ? ? A OMC 5 A MG 103 1_555 ? ? ? ? ? ? ? 1.947 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 101 A HOH 224 1_555 ? ? ? ? ? ? ? 1.915 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 101 A HOH 226 1_555 ? ? ? ? ? ? ? 2.190 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 101 A HOH 228 1_555 ? ? ? ? ? ? ? 1.895 ? ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 103 A HOH 219 1_555 ? ? ? ? ? ? ? 2.080 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 103 A HOH 221 1_555 ? ? ? ? ? ? ? 2.448 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 103 B HOH 217 6_665 ? ? ? ? ? ? ? 2.159 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 103 B HOH 223 6_665 ? ? ? ? ? ? ? 1.982 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 103 B HOH 224 6_665 ? ? ? ? ? ? ? 1.909 ? ? metalc11 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 104 A HOH 208 1_555 ? ? ? ? ? ? ? 2.110 ? ? metalc12 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 104 A HOH 212 1_555 ? ? ? ? ? ? ? 1.893 ? ? metalc13 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 104 A HOH 218 1_555 ? ? ? ? ? ? ? 2.367 ? ? metalc14 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 104 A HOH 222 1_555 ? ? ? ? ? ? ? 1.906 ? ? metalc15 metalc ? ? B OMG 2 OP1 ? ? ? 1_555 G MG . MG ? ? B OMG 2 B MG 102 1_555 ? ? ? ? ? ? ? 2.022 ? ? metalc16 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 102 B HOH 219 1_555 ? ? ? ? ? ? ? 2.248 ? ? metalc17 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 102 B HOH 221 1_555 ? ? ? ? ? ? ? 2.004 ? ? metalc18 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 102 B HOH 222 1_555 ? ? ? ? ? ? ? 2.206 ? ? metalc19 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 102 B HOH 227 1_555 ? ? ? ? ? ? ? 2.019 ? ? metalc20 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 102 B HOH 232 1_555 ? ? ? ? ? ? ? 2.052 ? ? metalc21 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 105 B HOH 206 1_555 ? ? ? ? ? ? ? 2.089 ? ? metalc22 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 105 B HOH 207 1_555 ? ? ? ? ? ? ? 2.014 ? ? metalc23 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 105 B HOH 226 1_555 ? ? ? ? ? ? ? 1.752 ? ? metalc24 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 105 B HOH 231 1_555 ? ? ? ? ? ? ? 1.976 ? ? hydrog1 hydrog ? ? A OMC 1 N3 ? ? ? 1_555 B OMG 6 N1 ? ? A OMC 1 B OMG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A OMC 1 N4 ? ? ? 1_555 B OMG 6 O6 ? ? A OMC 1 B OMG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A OMC 1 O2 ? ? ? 1_555 B OMG 6 N2 ? ? A OMC 1 B OMG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A OMG 2 N1 ? ? ? 1_555 B OMC 5 N3 ? ? A OMG 2 B OMC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A OMG 2 N2 ? ? ? 1_555 B OMC 5 O2 ? ? A OMG 2 B OMC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A OMG 2 O6 ? ? ? 1_555 B OMC 5 N4 ? ? A OMG 2 B OMC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A OMC 3 N3 ? ? ? 1_555 B OMG 4 N1 ? ? A OMC 3 B OMG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A OMC 3 N4 ? ? ? 1_555 B OMG 4 O6 ? ? A OMC 3 B OMG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A OMC 3 O2 ? ? ? 1_555 B OMG 4 N2 ? ? A OMC 3 B OMG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A OMG 4 N1 ? ? ? 1_555 B OMC 3 N3 ? ? A OMG 4 B OMC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A OMG 4 N2 ? ? ? 1_555 B OMC 3 O2 ? ? A OMG 4 B OMC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A OMG 4 O6 ? ? ? 1_555 B OMC 3 N4 ? ? A OMG 4 B OMC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A OMC 5 N3 ? ? ? 1_555 B OMG 2 N1 ? ? A OMC 5 B OMG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A OMC 5 N4 ? ? ? 1_555 B OMG 2 O6 ? ? A OMC 5 B OMG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A OMC 5 O2 ? ? ? 1_555 B OMG 2 N2 ? ? A OMC 5 B OMG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A OMG 6 N1 ? ? ? 1_555 B OMC 1 N3 ? ? A OMG 6 B OMC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A OMG 6 N2 ? ? ? 1_555 B OMC 1 O2 ? ? A OMG 6 B OMC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A OMG 6 O6 ? ? ? 1_555 B OMC 1 N4 ? ? A OMG 6 B OMC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 101 ? 6 'BINDING SITE FOR RESIDUE MG A 101' AC2 Software B MG 102 ? 6 'BINDING SITE FOR RESIDUE MG B 102' AC3 Software A MG 103 ? 7 'BINDING SITE FOR RESIDUE MG A 103' AC4 Software A MG 104 ? 4 'BINDING SITE FOR RESIDUE MG A 104' AC5 Software B MG 105 ? 4 'BINDING SITE FOR RESIDUE MG B 105' AC6 Software A MPD 201 ? 5 'BINDING SITE FOR RESIDUE MPD A 201' AC7 Software B MPD 202 ? 6 'BINDING SITE FOR RESIDUE MPD B 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 OMG A 2 ? OMG A 2 . ? 1_555 ? 2 AC1 6 HOH J . ? HOH A 224 . ? 1_555 ? 3 AC1 6 HOH J . ? HOH A 225 . ? 1_555 ? 4 AC1 6 HOH J . ? HOH A 226 . ? 1_555 ? 5 AC1 6 HOH J . ? HOH A 228 . ? 1_555 ? 6 AC1 6 HOH J . ? HOH A 229 . ? 1_555 ? 7 AC2 6 OMG B 2 ? OMG B 2 . ? 1_555 ? 8 AC2 6 HOH K . ? HOH B 219 . ? 1_555 ? 9 AC2 6 HOH K . ? HOH B 221 . ? 1_555 ? 10 AC2 6 HOH K . ? HOH B 222 . ? 1_555 ? 11 AC2 6 HOH K . ? HOH B 227 . ? 1_555 ? 12 AC2 6 HOH K . ? HOH B 232 . ? 1_555 ? 13 AC3 7 OMC A 5 ? OMC A 5 . ? 1_555 ? 14 AC3 7 HOH J . ? HOH A 219 . ? 1_555 ? 15 AC3 7 HOH J . ? HOH A 221 . ? 1_555 ? 16 AC3 7 OMC B 5 ? OMC B 5 . ? 6_665 ? 17 AC3 7 HOH K . ? HOH B 217 . ? 6_665 ? 18 AC3 7 HOH K . ? HOH B 223 . ? 6_665 ? 19 AC3 7 HOH K . ? HOH B 224 . ? 6_665 ? 20 AC4 4 HOH J . ? HOH A 208 . ? 1_555 ? 21 AC4 4 HOH J . ? HOH A 212 . ? 1_555 ? 22 AC4 4 HOH J . ? HOH A 218 . ? 1_555 ? 23 AC4 4 HOH J . ? HOH A 222 . ? 1_555 ? 24 AC5 4 HOH K . ? HOH B 206 . ? 1_555 ? 25 AC5 4 HOH K . ? HOH B 207 . ? 1_555 ? 26 AC5 4 HOH K . ? HOH B 226 . ? 1_555 ? 27 AC5 4 HOH K . ? HOH B 231 . ? 1_555 ? 28 AC6 5 OMG A 2 ? OMG A 2 . ? 1_555 ? 29 AC6 5 OMC A 3 ? OMC A 3 . ? 1_555 ? 30 AC6 5 OMG A 4 ? OMG A 4 . ? 6_555 ? 31 AC6 5 OMG A 6 ? OMG A 6 . ? 1_545 ? 32 AC6 5 HOH J . ? HOH A 213 . ? 1_555 ? 33 AC7 6 OMC A 5 ? OMC A 5 . ? 1_555 ? 34 AC7 6 OMG A 6 ? OMG A 6 . ? 1_555 ? 35 AC7 6 OMG B 2 ? OMG B 2 . ? 1_555 ? 36 AC7 6 OMC B 3 ? OMC B 3 . ? 1_555 ? 37 AC7 6 OMG B 6 ? OMG B 6 . ? 1_565 ? 38 AC7 6 HOH K . ? HOH B 216 . ? 1_555 ? # _database_PDB_matrix.entry_id 1I7J _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1I7J _atom_sites.fract_transf_matrix[1][1] 0.040314 _atom_sites.fract_transf_matrix[1][2] 0.023276 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.046551 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012925 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 OMC 1 1 1 OMC +C A . n A 1 2 OMG 2 2 2 OMG +G A . n A 1 3 OMC 3 3 3 OMC +C A . n A 1 4 OMG 4 4 4 OMG +G A . n A 1 5 OMC 5 5 5 OMC +C A . n A 1 6 OMG 6 6 6 OMG +G A . n B 1 1 OMC 1 1 1 OMC +C B . n B 1 2 OMG 2 2 2 OMG +G B . n B 1 3 OMC 3 3 3 OMC +C B . n B 1 4 OMG 4 4 4 OMG +G B . n B 1 5 OMC 5 5 5 OMC +C B . n B 1 6 OMG 6 6 6 OMG +G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 101 1 MG MG A . D 2 MG 1 103 3 MG MG A . E 2 MG 1 104 4 MG MG A . F 3 MPD 1 201 1 MPD MPD A . G 2 MG 1 102 2 MG MG B . H 2 MG 1 105 5 MG MG B . I 3 MPD 1 202 2 MPD MPD B . J 4 HOH 1 202 1 HOH HOH A . J 4 HOH 2 203 4 HOH HOH A . J 4 HOH 3 204 5 HOH HOH A . J 4 HOH 4 205 6 HOH HOH A . J 4 HOH 5 206 12 HOH HOH A . J 4 HOH 6 207 13 HOH HOH A . J 4 HOH 7 208 14 HOH HOH A . J 4 HOH 8 209 15 HOH HOH A . J 4 HOH 9 210 16 HOH HOH A . J 4 HOH 10 211 17 HOH HOH A . J 4 HOH 11 212 18 HOH HOH A . J 4 HOH 12 213 20 HOH HOH A . J 4 HOH 13 214 24 HOH HOH A . J 4 HOH 14 215 26 HOH HOH A . J 4 HOH 15 216 30 HOH HOH A . J 4 HOH 16 217 32 HOH HOH A . J 4 HOH 17 218 37 HOH HOH A . J 4 HOH 18 219 38 HOH HOH A . J 4 HOH 19 220 39 HOH HOH A . J 4 HOH 20 221 40 HOH HOH A . J 4 HOH 21 222 43 HOH HOH A . J 4 HOH 22 223 44 HOH HOH A . J 4 HOH 23 224 45 HOH HOH A . J 4 HOH 24 225 46 HOH HOH A . J 4 HOH 25 226 47 HOH HOH A . J 4 HOH 26 227 48 HOH HOH A . J 4 HOH 27 228 49 HOH HOH A . J 4 HOH 28 229 51 HOH HOH A . J 4 HOH 29 230 52 HOH HOH A . J 4 HOH 30 231 55 HOH HOH A . J 4 HOH 31 232 59 HOH HOH A . J 4 HOH 32 233 61 HOH HOH A . J 4 HOH 33 234 62 HOH HOH A . K 4 HOH 1 203 2 HOH HOH B . K 4 HOH 2 204 3 HOH HOH B . K 4 HOH 3 205 7 HOH HOH B . K 4 HOH 4 206 8 HOH HOH B . K 4 HOH 5 207 9 HOH HOH B . K 4 HOH 6 208 10 HOH HOH B . K 4 HOH 7 209 11 HOH HOH B . K 4 HOH 8 210 19 HOH HOH B . K 4 HOH 9 211 21 HOH HOH B . K 4 HOH 10 212 22 HOH HOH B . K 4 HOH 11 213 23 HOH HOH B . K 4 HOH 12 214 25 HOH HOH B . K 4 HOH 13 215 27 HOH HOH B . K 4 HOH 14 216 28 HOH HOH B . K 4 HOH 15 217 29 HOH HOH B . K 4 HOH 16 218 31 HOH HOH B . K 4 HOH 17 219 33 HOH HOH B . K 4 HOH 18 220 34 HOH HOH B . K 4 HOH 19 221 35 HOH HOH B . K 4 HOH 20 222 36 HOH HOH B . K 4 HOH 21 223 41 HOH HOH B . K 4 HOH 22 224 42 HOH HOH B . K 4 HOH 23 225 50 HOH HOH B . K 4 HOH 24 226 53 HOH HOH B . K 4 HOH 25 227 54 HOH HOH B . K 4 HOH 26 228 56 HOH HOH B . K 4 HOH 27 229 57 HOH HOH B . K 4 HOH 28 230 58 HOH HOH B . K 4 HOH 29 231 60 HOH HOH B . K 4 HOH 30 232 63 HOH HOH B . K 4 HOH 31 233 64 HOH HOH B . K 4 HOH 32 234 65 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A OMC 1 A OMC 1 ? C "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" 2 A OMG 2 A OMG 2 ? G "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" 3 A OMC 3 A OMC 3 ? C "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" 4 A OMG 4 A OMG 4 ? G "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" 5 A OMC 5 A OMC 5 ? C "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" 6 A OMG 6 A OMG 6 ? G "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" 7 B OMC 1 B OMC 1 ? C "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" 8 B OMG 2 B OMG 2 ? G "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" 9 B OMC 3 B OMC 3 ? C "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" 10 B OMG 4 B OMG 4 ? G "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" 11 B OMC 5 B OMC 5 ? C "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" 12 B OMG 6 B OMG 6 ? G "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 211 ? J HOH . 2 1 B HOH 215 ? K HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A OMG 2 ? A OMG 2 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? J HOH . ? A HOH 224 ? 1_555 75.4 ? 2 OP1 ? A OMG 2 ? A OMG 2 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? J HOH . ? A HOH 226 ? 1_555 96.4 ? 3 O ? J HOH . ? A HOH 224 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? J HOH . ? A HOH 226 ? 1_555 82.7 ? 4 OP1 ? A OMG 2 ? A OMG 2 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? J HOH . ? A HOH 228 ? 1_555 172.9 ? 5 O ? J HOH . ? A HOH 224 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? J HOH . ? A HOH 228 ? 1_555 107.7 ? 6 O ? J HOH . ? A HOH 226 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? J HOH . ? A HOH 228 ? 1_555 90.4 ? 7 OP1 ? A OMC 5 ? A OMC 5 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? J HOH . ? A HOH 219 ? 1_555 85.4 ? 8 OP1 ? A OMC 5 ? A OMC 5 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? J HOH . ? A HOH 221 ? 1_555 86.8 ? 9 O ? J HOH . ? A HOH 219 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? J HOH . ? A HOH 221 ? 1_555 98.2 ? 10 OP1 ? A OMC 5 ? A OMC 5 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? B HOH 217 ? 6_665 100.5 ? 11 O ? J HOH . ? A HOH 219 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? B HOH 217 ? 6_665 162.3 ? 12 O ? J HOH . ? A HOH 221 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? B HOH 217 ? 6_665 98.8 ? 13 OP1 ? A OMC 5 ? A OMC 5 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? B HOH 223 ? 6_665 97.7 ? 14 O ? J HOH . ? A HOH 219 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? B HOH 223 ? 6_665 59.3 ? 15 O ? J HOH . ? A HOH 221 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? B HOH 223 ? 6_665 41.6 ? 16 O ? K HOH . ? B HOH 217 ? 6_665 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? B HOH 223 ? 6_665 135.0 ? 17 OP1 ? A OMC 5 ? A OMC 5 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? B HOH 224 ? 6_665 80.2 ? 18 O ? J HOH . ? A HOH 219 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? B HOH 224 ? 6_665 138.5 ? 19 O ? J HOH . ? A HOH 221 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? B HOH 224 ? 6_665 42.6 ? 20 O ? K HOH . ? B HOH 217 ? 6_665 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? B HOH 224 ? 6_665 59.2 ? 21 O ? K HOH . ? B HOH 223 ? 6_665 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? B HOH 224 ? 6_665 84.2 ? 22 O ? J HOH . ? A HOH 208 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? J HOH . ? A HOH 212 ? 1_555 95.6 ? 23 O ? J HOH . ? A HOH 208 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? J HOH . ? A HOH 218 ? 1_555 167.7 ? 24 O ? J HOH . ? A HOH 212 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? J HOH . ? A HOH 218 ? 1_555 92.7 ? 25 O ? J HOH . ? A HOH 208 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? J HOH . ? A HOH 222 ? 1_555 101.2 ? 26 O ? J HOH . ? A HOH 212 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? J HOH . ? A HOH 222 ? 1_555 85.2 ? 27 O ? J HOH . ? A HOH 218 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? J HOH . ? A HOH 222 ? 1_555 88.6 ? 28 OP1 ? B OMG 2 ? B OMG 2 ? 1_555 MG ? G MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 219 ? 1_555 102.1 ? 29 OP1 ? B OMG 2 ? B OMG 2 ? 1_555 MG ? G MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 221 ? 1_555 98.8 ? 30 O ? K HOH . ? B HOH 219 ? 1_555 MG ? G MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 221 ? 1_555 87.2 ? 31 OP1 ? B OMG 2 ? B OMG 2 ? 1_555 MG ? G MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 222 ? 1_555 160.4 ? 32 O ? K HOH . ? B HOH 219 ? 1_555 MG ? G MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 222 ? 1_555 96.3 ? 33 O ? K HOH . ? B HOH 221 ? 1_555 MG ? G MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 222 ? 1_555 88.6 ? 34 OP1 ? B OMG 2 ? B OMG 2 ? 1_555 MG ? G MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 227 ? 1_555 95.8 ? 35 O ? K HOH . ? B HOH 219 ? 1_555 MG ? G MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 227 ? 1_555 78.3 ? 36 O ? K HOH . ? B HOH 221 ? 1_555 MG ? G MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 227 ? 1_555 161.2 ? 37 O ? K HOH . ? B HOH 222 ? 1_555 MG ? G MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 227 ? 1_555 81.4 ? 38 OP1 ? B OMG 2 ? B OMG 2 ? 1_555 MG ? G MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 232 ? 1_555 75.1 ? 39 O ? K HOH . ? B HOH 219 ? 1_555 MG ? G MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 232 ? 1_555 177.2 ? 40 O ? K HOH . ? B HOH 221 ? 1_555 MG ? G MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 232 ? 1_555 93.5 ? 41 O ? K HOH . ? B HOH 222 ? 1_555 MG ? G MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 232 ? 1_555 86.4 ? 42 O ? K HOH . ? B HOH 227 ? 1_555 MG ? G MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 232 ? 1_555 101.6 ? 43 O ? K HOH . ? B HOH 206 ? 1_555 MG ? H MG . ? B MG 105 ? 1_555 O ? K HOH . ? B HOH 207 ? 1_555 87.3 ? 44 O ? K HOH . ? B HOH 206 ? 1_555 MG ? H MG . ? B MG 105 ? 1_555 O ? K HOH . ? B HOH 226 ? 1_555 104.5 ? 45 O ? K HOH . ? B HOH 207 ? 1_555 MG ? H MG . ? B MG 105 ? 1_555 O ? K HOH . ? B HOH 226 ? 1_555 96.6 ? 46 O ? K HOH . ? B HOH 206 ? 1_555 MG ? H MG . ? B MG 105 ? 1_555 O ? K HOH . ? B HOH 231 ? 1_555 94.3 ? 47 O ? K HOH . ? B HOH 207 ? 1_555 MG ? H MG . ? B MG 105 ? 1_555 O ? K HOH . ? B HOH 231 ? 1_555 172.1 ? 48 O ? K HOH . ? B HOH 226 ? 1_555 MG ? H MG . ? B MG 105 ? 1_555 O ? K HOH . ? B HOH 231 ? 1_555 90.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-09-21 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' diffrn_source 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 23 4 'Structure model' '_pdbx_struct_conn_angle.value' 24 4 'Structure model' '_struct_conn.pdbx_dist_value' 25 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 26 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 27 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 33 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 34 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 39 4 'Structure model' '_struct_conn.ptnr2_symmetry' 40 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 41 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 42 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 SHELXL-97 refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal HOH O O N N 1 HOH H1 H N N 2 HOH H2 H N N 3 MG MG MG N N 4 MPD C1 C N N 5 MPD C2 C N N 6 MPD O2 O N N 7 MPD CM C N N 8 MPD C3 C N N 9 MPD C4 C N S 10 MPD O4 O N N 11 MPD C5 C N N 12 MPD H11 H N N 13 MPD H12 H N N 14 MPD H13 H N N 15 MPD HO2 H N N 16 MPD HM1 H N N 17 MPD HM2 H N N 18 MPD HM3 H N N 19 MPD H31 H N N 20 MPD H32 H N N 21 MPD H4 H N N 22 MPD HO4 H N N 23 MPD H51 H N N 24 MPD H52 H N N 25 MPD H53 H N N 26 OMC N1 N N N 27 OMC C2 C N N 28 OMC N3 N N N 29 OMC C4 C N N 30 OMC C5 C N N 31 OMC C6 C N N 32 OMC O2 O N N 33 OMC N4 N N N 34 OMC "C1'" C N R 35 OMC "C2'" C N R 36 OMC "O2'" O N N 37 OMC CM2 C N N 38 OMC "C3'" C N R 39 OMC "C4'" C N R 40 OMC "O4'" O N N 41 OMC "O3'" O N N 42 OMC "C5'" C N N 43 OMC "O5'" O N N 44 OMC P P N N 45 OMC OP1 O N N 46 OMC OP2 O N N 47 OMC OP3 O N N 48 OMC H5 H N N 49 OMC H6 H N N 50 OMC HN41 H N N 51 OMC HN42 H N N 52 OMC "H1'" H N N 53 OMC "H2'" H N N 54 OMC HM21 H N N 55 OMC HM22 H N N 56 OMC HM23 H N N 57 OMC "H3'" H N N 58 OMC "H4'" H N N 59 OMC "HO3'" H N N 60 OMC "H5'" H N N 61 OMC "H5''" H N N 62 OMC HOP2 H N N 63 OMC HOP3 H N N 64 OMG P P N N 65 OMG OP1 O N N 66 OMG OP2 O N N 67 OMG OP3 O N N 68 OMG "O5'" O N N 69 OMG "C5'" C N N 70 OMG "C4'" C N R 71 OMG "O4'" O N N 72 OMG "C3'" C N R 73 OMG "O3'" O N N 74 OMG "C2'" C N R 75 OMG "O2'" O N N 76 OMG CM2 C N N 77 OMG "C1'" C N R 78 OMG N9 N Y N 79 OMG C8 C Y N 80 OMG N7 N Y N 81 OMG C5 C Y N 82 OMG C6 C N N 83 OMG O6 O N N 84 OMG N1 N N N 85 OMG C2 C N N 86 OMG N2 N N N 87 OMG N3 N N N 88 OMG C4 C Y N 89 OMG HOP2 H N N 90 OMG HOP3 H N N 91 OMG "H5'" H N N 92 OMG "H5''" H N N 93 OMG "H4'" H N N 94 OMG "H3'" H N N 95 OMG "HO3'" H N N 96 OMG "H2'" H N N 97 OMG HM21 H N N 98 OMG HM22 H N N 99 OMG HM23 H N N 100 OMG "H1'" H N N 101 OMG H8 H N N 102 OMG HN1 H N N 103 OMG HN21 H N N 104 OMG HN22 H N N 105 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HOH O H1 sing N N 1 HOH O H2 sing N N 2 MPD C1 C2 sing N N 3 MPD C1 H11 sing N N 4 MPD C1 H12 sing N N 5 MPD C1 H13 sing N N 6 MPD C2 O2 sing N N 7 MPD C2 CM sing N N 8 MPD C2 C3 sing N N 9 MPD O2 HO2 sing N N 10 MPD CM HM1 sing N N 11 MPD CM HM2 sing N N 12 MPD CM HM3 sing N N 13 MPD C3 C4 sing N N 14 MPD C3 H31 sing N N 15 MPD C3 H32 sing N N 16 MPD C4 O4 sing N N 17 MPD C4 C5 sing N N 18 MPD C4 H4 sing N N 19 MPD O4 HO4 sing N N 20 MPD C5 H51 sing N N 21 MPD C5 H52 sing N N 22 MPD C5 H53 sing N N 23 OMC N1 C2 sing N N 24 OMC N1 C6 sing N N 25 OMC N1 "C1'" sing N N 26 OMC C2 N3 sing N N 27 OMC C2 O2 doub N N 28 OMC N3 C4 doub N N 29 OMC C4 C5 sing N N 30 OMC C4 N4 sing N N 31 OMC C5 C6 doub N N 32 OMC C5 H5 sing N N 33 OMC C6 H6 sing N N 34 OMC N4 HN41 sing N N 35 OMC N4 HN42 sing N N 36 OMC "C1'" "C2'" sing N N 37 OMC "C1'" "O4'" sing N N 38 OMC "C1'" "H1'" sing N N 39 OMC "C2'" "O2'" sing N N 40 OMC "C2'" "C3'" sing N N 41 OMC "C2'" "H2'" sing N N 42 OMC "O2'" CM2 sing N N 43 OMC CM2 HM21 sing N N 44 OMC CM2 HM22 sing N N 45 OMC CM2 HM23 sing N N 46 OMC "C3'" "C4'" sing N N 47 OMC "C3'" "O3'" sing N N 48 OMC "C3'" "H3'" sing N N 49 OMC "C4'" "O4'" sing N N 50 OMC "C4'" "C5'" sing N N 51 OMC "C4'" "H4'" sing N N 52 OMC "O3'" "HO3'" sing N N 53 OMC "C5'" "O5'" sing N N 54 OMC "C5'" "H5'" sing N N 55 OMC "C5'" "H5''" sing N N 56 OMC "O5'" P sing N N 57 OMC P OP1 doub N N 58 OMC P OP2 sing N N 59 OMC P OP3 sing N N 60 OMC OP2 HOP2 sing N N 61 OMC OP3 HOP3 sing N N 62 OMG P OP1 doub N N 63 OMG P OP2 sing N N 64 OMG P OP3 sing N N 65 OMG P "O5'" sing N N 66 OMG OP2 HOP2 sing N N 67 OMG OP3 HOP3 sing N N 68 OMG "O5'" "C5'" sing N N 69 OMG "C5'" "C4'" sing N N 70 OMG "C5'" "H5'" sing N N 71 OMG "C5'" "H5''" sing N N 72 OMG "C4'" "O4'" sing N N 73 OMG "C4'" "C3'" sing N N 74 OMG "C4'" "H4'" sing N N 75 OMG "O4'" "C1'" sing N N 76 OMG "C3'" "O3'" sing N N 77 OMG "C3'" "C2'" sing N N 78 OMG "C3'" "H3'" sing N N 79 OMG "O3'" "HO3'" sing N N 80 OMG "C2'" "O2'" sing N N 81 OMG "C2'" "C1'" sing N N 82 OMG "C2'" "H2'" sing N N 83 OMG "O2'" CM2 sing N N 84 OMG CM2 HM21 sing N N 85 OMG CM2 HM22 sing N N 86 OMG CM2 HM23 sing N N 87 OMG "C1'" N9 sing N N 88 OMG "C1'" "H1'" sing N N 89 OMG N9 C8 sing Y N 90 OMG N9 C4 sing Y N 91 OMG C8 N7 doub Y N 92 OMG C8 H8 sing N N 93 OMG N7 C5 sing Y N 94 OMG C5 C6 sing N N 95 OMG C5 C4 doub Y N 96 OMG C6 O6 doub N N 97 OMG C6 N1 sing N N 98 OMG N1 C2 sing N N 99 OMG N1 HN1 sing N N 100 OMG C2 N2 sing N N 101 OMG C2 N3 doub N N 102 OMG N2 HN21 sing N N 103 OMG N2 HN22 sing N N 104 OMG N3 C4 sing N N 105 # _ndb_struct_conf_na.entry_id 1I7J _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A OMC 1 1_555 B OMG 6 1_555 0.028 -0.068 -0.065 9.032 -16.361 -2.306 1 A_OMC1:OMG6_B A 1 ? B 6 ? 19 1 1 A OMG 2 1_555 B OMC 5 1_555 -0.183 -0.141 0.268 6.930 -13.356 -0.442 2 A_OMG2:OMC5_B A 2 ? B 5 ? 19 1 1 A OMC 3 1_555 B OMG 4 1_555 0.195 -0.148 -0.074 3.680 -15.822 -1.232 3 A_OMC3:OMG4_B A 3 ? B 4 ? 19 1 1 A OMG 4 1_555 B OMC 3 1_555 -0.155 -0.176 -0.044 -3.036 -15.390 -1.537 4 A_OMG4:OMC3_B A 4 ? B 3 ? 19 1 1 A OMC 5 1_555 B OMG 2 1_555 0.151 -0.145 0.120 -5.489 -14.397 -1.409 5 A_OMC5:OMG2_B A 5 ? B 2 ? 19 1 1 A OMG 6 1_555 B OMC 1 1_555 -0.041 -0.123 -0.009 -8.044 -17.141 -3.630 6 A_OMG6:OMC1_B A 6 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A OMC 1 1_555 B OMG 6 1_555 A OMG 2 1_555 B OMC 5 1_555 -0.374 -1.817 3.133 -7.429 15.004 32.300 -4.719 -0.292 2.143 24.985 12.371 36.279 1 AA_OMC1OMG2:OMC5OMG6_BB A 1 ? B 6 ? A 2 ? B 5 ? 1 A OMG 2 1_555 B OMC 5 1_555 A OMC 3 1_555 B OMG 4 1_555 -0.580 -1.419 3.295 0.447 10.373 34.917 -3.641 0.988 2.767 16.833 -0.725 36.382 2 AA_OMG2OMC3:OMG4OMC5_BB A 2 ? B 5 ? A 3 ? B 4 ? 1 A OMC 3 1_555 B OMG 4 1_555 A OMG 4 1_555 B OMC 3 1_555 -0.015 -1.672 3.233 -0.411 19.895 30.766 -5.004 -0.024 1.849 33.469 0.691 36.510 3 AA_OMC3OMG4:OMC3OMG4_BB A 3 ? B 4 ? A 4 ? B 3 ? 1 A OMG 4 1_555 B OMC 3 1_555 A OMC 5 1_555 B OMG 2 1_555 0.544 -1.412 3.276 1.107 10.495 34.372 -3.706 -0.733 2.756 17.261 -1.821 35.909 4 AA_OMG4OMC5:OMG2OMC3_BB A 4 ? B 3 ? A 5 ? B 2 ? 1 A OMC 5 1_555 B OMG 2 1_555 A OMG 6 1_555 B OMC 1 1_555 0.386 -1.819 3.162 5.835 15.419 32.310 -4.798 0.086 2.140 25.724 -9.735 36.173 5 AA_OMC5OMG6:OMC1OMG2_BB A 5 ? B 2 ? A 6 ? B 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 310D _pdbx_initial_refinement_model.details 'PDB 310D' #