data_1I8I # _entry.id 1I8I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1I8I pdb_00001i8i 10.2210/pdb1i8i/pdb RCSB RCSB013037 ? ? WWPDB D_1000013037 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1i8k _pdbx_database_related.details 'same protein, at liquid nitrogen temperature' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1I8I _pdbx_database_status.recvd_initial_deposition_date 2001-03-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Landry, R.C.' 1 'Klimowicz, A.C.' 2 'Lavictoire, S.J.' 3 'Borisova, S.' 4 'Kottachchi, D.T.' 5 'Lorimer, I.A.' 6 'Evans, S.V.' 7 # _citation.id primary _citation.title ;Antibody recognition of a conformational epitope in a peptide antigen: Fv-peptide complex of an antibody fragment specific for the mutant EGF receptor, EGFRvIII. ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 308 _citation.page_first 883 _citation.page_last 893 _citation.year 2001 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11352579 _citation.pdbx_database_id_DOI 10.1006/jmbi.2001.4628 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Landry, R.C.' 1 ? primary 'Klimowicz, A.C.' 2 ? primary 'Lavictoire, S.J.' 3 ? primary 'Borisova, S.' 4 ? primary 'Kottachchi, D.T.' 5 ? primary 'Lorimer, I.A.' 6 ? primary 'Evans, S.V.' 7 ? # _cell.entry_id 1I8I _cell.length_a 111.600 _cell.length_b 45.300 _cell.length_c 110.400 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I8I _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'EPIDERMAL GROWTH FACTOR RECEPTOR ANTIBODY MR1SCFV LIGHT CHAIN' 11745.038 1 ? D100C ? ? 2 polymer man 'EPIDERMAL GROWTH FACTOR RECEPTOR ANTIBODY MR1SCFV HEAVY CHAIN' 13712.354 1 ? R344C ? ? 3 polymer syn 'EPIDERMAL GROWTH FACTOR RECEPTOR, EGFRVIII PEPTIDE ANTIGEN' 1421.531 1 ? ? 'N-TERMINAL FRAGMENT' ? 4 water nat water 18.015 85 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'DSFV MR1 VARIABLE DOMAIN LIGHT CHAIN' 2 'DSFV MR1 VARIABLE DOMAIN HEAVY CHAIN' 3 'EPIDERMAL GROWTH FACTOR RECEPTOR, EGFRVIII PEPTIDE ANTIGEN' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;DIELTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLS EDVGDYYCLQSFNVPLTFGCGTKLEIK ; ;DIELTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLS EDVGDYYCLQSFNVPLTFGCGTKLEIK ; A ? 2 'polypeptide(L)' no no ;QVKLQQSGGGLVKPGASLKLSCVTSGFTFRKFGMSWVRQTSDKCLEWVASISTGGYNTYYSDNVKGRFTISRENAKNTLY LQMSSLKSEDTALYYCTRGYSSTSYAMDYWGQGTTVTVSGIEGR ; ;QVKLQQSGGGLVKPGASLKLSCVTSGFTFRKFGMSWVRQTSDKCLEWVASISTGGYNTYYSDNVKGRFTISRENAKNTLY LQMSSLKSEDTALYYCTRGYSSTSYAMDYWGQGTTVTVSGIEGR ; B ? 3 'polypeptide(L)' no no EEKKGNYVVTDH EEKKGNYVVTDH C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ILE n 1 3 GLU n 1 4 LEU n 1 5 THR n 1 6 GLN n 1 7 SER n 1 8 PRO n 1 9 ALA n 1 10 SER n 1 11 LEU n 1 12 SER n 1 13 VAL n 1 14 ALA n 1 15 THR n 1 16 GLY n 1 17 GLU n 1 18 LYS n 1 19 VAL n 1 20 THR n 1 21 ILE n 1 22 ARG n 1 23 CYS n 1 24 MET n 1 25 THR n 1 26 SER n 1 27 THR n 1 28 ASP n 1 29 ILE n 1 30 ASP n 1 31 ASP n 1 32 ASP n 1 33 MET n 1 34 ASN n 1 35 TRP n 1 36 TYR n 1 37 GLN n 1 38 GLN n 1 39 LYS n 1 40 PRO n 1 41 GLY n 1 42 GLU n 1 43 PRO n 1 44 PRO n 1 45 LYS n 1 46 PHE n 1 47 LEU n 1 48 ILE n 1 49 SER n 1 50 GLU n 1 51 GLY n 1 52 ASN n 1 53 THR n 1 54 LEU n 1 55 ARG n 1 56 PRO n 1 57 GLY n 1 58 VAL n 1 59 PRO n 1 60 SER n 1 61 ARG n 1 62 PHE n 1 63 SER n 1 64 SER n 1 65 SER n 1 66 GLY n 1 67 THR n 1 68 GLY n 1 69 THR n 1 70 ASP n 1 71 PHE n 1 72 VAL n 1 73 PHE n 1 74 THR n 1 75 ILE n 1 76 GLU n 1 77 ASN n 1 78 THR n 1 79 LEU n 1 80 SER n 1 81 GLU n 1 82 ASP n 1 83 VAL n 1 84 GLY n 1 85 ASP n 1 86 TYR n 1 87 TYR n 1 88 CYS n 1 89 LEU n 1 90 GLN n 1 91 SER n 1 92 PHE n 1 93 ASN n 1 94 VAL n 1 95 PRO n 1 96 LEU n 1 97 THR n 1 98 PHE n 1 99 GLY n 1 100 CYS n 1 101 GLY n 1 102 THR n 1 103 LYS n 1 104 LEU n 1 105 GLU n 1 106 ILE n 1 107 LYS n 2 1 GLN n 2 2 VAL n 2 3 LYS n 2 4 LEU n 2 5 GLN n 2 6 GLN n 2 7 SER n 2 8 GLY n 2 9 GLY n 2 10 GLY n 2 11 LEU n 2 12 VAL n 2 13 LYS n 2 14 PRO n 2 15 GLY n 2 16 ALA n 2 17 SER n 2 18 LEU n 2 19 LYS n 2 20 LEU n 2 21 SER n 2 22 CYS n 2 23 VAL n 2 24 THR n 2 25 SER n 2 26 GLY n 2 27 PHE n 2 28 THR n 2 29 PHE n 2 30 ARG n 2 31 LYS n 2 32 PHE n 2 33 GLY n 2 34 MET n 2 35 SER n 2 36 TRP n 2 37 VAL n 2 38 ARG n 2 39 GLN n 2 40 THR n 2 41 SER n 2 42 ASP n 2 43 LYS n 2 44 CYS n 2 45 LEU n 2 46 GLU n 2 47 TRP n 2 48 VAL n 2 49 ALA n 2 50 SER n 2 51 ILE n 2 52 SER n 2 53 THR n 2 54 GLY n 2 55 GLY n 2 56 TYR n 2 57 ASN n 2 58 THR n 2 59 TYR n 2 60 TYR n 2 61 SER n 2 62 ASP n 2 63 ASN n 2 64 VAL n 2 65 LYS n 2 66 GLY n 2 67 ARG n 2 68 PHE n 2 69 THR n 2 70 ILE n 2 71 SER n 2 72 ARG n 2 73 GLU n 2 74 ASN n 2 75 ALA n 2 76 LYS n 2 77 ASN n 2 78 THR n 2 79 LEU n 2 80 TYR n 2 81 LEU n 2 82 GLN n 2 83 MET n 2 84 SER n 2 85 SER n 2 86 LEU n 2 87 LYS n 2 88 SER n 2 89 GLU n 2 90 ASP n 2 91 THR n 2 92 ALA n 2 93 LEU n 2 94 TYR n 2 95 TYR n 2 96 CYS n 2 97 THR n 2 98 ARG n 2 99 GLY n 2 100 TYR n 2 101 SER n 2 102 SER n 2 103 THR n 2 104 SER n 2 105 TYR n 2 106 ALA n 2 107 MET n 2 108 ASP n 2 109 TYR n 2 110 TRP n 2 111 GLY n 2 112 GLN n 2 113 GLY n 2 114 THR n 2 115 THR n 2 116 VAL n 2 117 THR n 2 118 VAL n 2 119 SER n 2 120 GLY n 2 121 ILE n 2 122 GLU n 2 123 GLY n 2 124 ARG n 3 1 GLU n 3 2 GLU n 3 3 LYS n 3 4 LYS n 3 5 GLY n 3 6 ASN n 3 7 TYR n 3 8 VAL n 3 9 VAL n 3 10 THR n 3 11 ASP n 3 12 HIS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? 'house mouse' Mus ? ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? TG1 ? ? ? ? ? ? ? 'M13KO7 HELPER PHAGE' ? ? ? ? ? ? 2 1 sample ? ? ? 'house mouse' Mus ? ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? TG1 ? ? ? ? ? ? ? 'M13KO7 HELPER PHAGE' ? ? ? ? ? ? # _pdbx_entity_src_syn.entity_id 3 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'The peptide sequence is from the N-terminus of the mutant epidermal growth factor receptor, EGFRvIII.' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP Q8R028 1 ;DIELTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLS EDVGDYYCLQSFNVPLTFGDGTKLEIK ; 136 Q8R028 ? 2 UNP HV58_MOUSE 2 ;QVKLQQSGGGLVKPGASLKLSCVTSGFTFRKFGMSWVRQTSDKRLEWVASISTGGYNTYYSDNVKGRFTISRENAKNTLY LQMSSLKSEDTALYYCTRGYSSTSYAMDYWGQGTTVTVSGIEGR ; 1 P18529 ? 3 PDB 1I8I 3 ? ? 1I8I ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1I8I A 1 ? 107 ? Q8R028 136 ? 242 ? 1 107 2 2 1I8I B 1 ? 124 ? P18529 1 ? 124 ? 301 424 3 3 1I8I C 1 ? 12 ? 1I8I 499 ? 510 ? 499 510 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1I8I CYS A 100 ? UNP Q8R028 ASP 235 'engineered mutation' 100 1 2 1I8I CYS B 44 ? UNP P18529 ARG 44 'engineered mutation' 344 2 2 1I8I GLY B 120 ? UNP P18529 SER 120 conflict 420 3 2 1I8I ILE B 121 ? UNP P18529 SER 121 conflict 421 4 2 1I8I GLU B 122 ? UNP P18529 GLY 122 conflict 422 5 2 1I8I ARG B 124 ? UNP P18529 GLY 124 conflict 424 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1I8I _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.60 _exptl_crystal.density_percent_sol 52.61 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'sodium chloride, MPD, PEG 10K, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2000-04-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Supper focussing mirrors' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1I8I _reflns.observed_criterion_sigma_I 3 _reflns.observed_criterion_sigma_F 3 _reflns.d_resolution_low 6.0 _reflns.d_resolution_high 2.4 _reflns.number_obs 9119 _reflns.number_all 9686 _reflns.percent_possible_obs 91.9 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.2 _reflns.B_iso_Wilson_estimate 40.12 _reflns.pdbx_redundancy 2.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.4 _reflns_shell.d_res_low 2.48 _reflns_shell.percent_possible_all 62.3 _reflns_shell.Rmerge_I_obs 0.115 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 2.46 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1I8I _refine.ls_number_reflns_obs 9119 _refine.ls_number_reflns_all 9686 _refine.pdbx_ls_sigma_I 3 _refine.pdbx_ls_sigma_F 3 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 6.0 _refine.ls_d_res_high 2.4 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.173 _refine.ls_R_factor_all 0.176 _refine.ls_R_factor_R_work 0.156 _refine.ls_R_factor_R_free 0.262 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 997 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 26 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values CHARMm _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1811 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 85 _refine_hist.number_atoms_total 1896 _refine_hist.d_res_high 2.4 _refine_hist.d_res_low 6.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_angle_deg 3.2 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d 0.017 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.40 _refine_ls_shell.d_res_low 2.50 _refine_ls_shell.number_reflns_R_work 678 _refine_ls_shell.R_factor_R_work 0.245 _refine_ls_shell.percent_reflns_obs 65.3 _refine_ls_shell.R_factor_R_free 0.344 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 83 _refine_ls_shell.number_reflns_obs 8170 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1I8I _struct.title ;CRYSTAL STRUCTURE OF DSFV MR1 IN COMPLEX WITH THE PEPTIDE ANTIGEN OF THE MUTANT EPIDERMAL GROWTH FACTOR RECEPTOR, EGFRVIII, AT ROOM TEMPERATURE ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1I8I _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text ;antibody-peptide complex, immunoglobulin fold, peptide antigen, type II' beta turn, IMMUNE SYSTEM ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 79 ? VAL A 83 ? LEU A 79 VAL A 83 5 ? 5 HELX_P HELX_P2 2 THR B 28 ? PHE B 32 ? THR B 328 PHE B 332 5 ? 5 HELX_P HELX_P3 3 LYS B 87 ? THR B 91 ? LYS B 387 THR B 391 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 23 SG ? ? ? 1_555 A CYS 88 SG ? ? A CYS 23 A CYS 88 1_555 ? ? ? ? ? ? ? 2.001 ? ? disulf2 disulf ? ? A CYS 100 SG ? ? ? 1_555 B CYS 44 SG ? ? A CYS 100 B CYS 344 1_555 ? ? ? ? ? ? ? 1.985 ? ? disulf3 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 96 SG ? ? B CYS 322 B CYS 396 1_555 ? ? ? ? ? ? ? 1.988 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 7 A . ? SER 7 A PRO 8 A ? PRO 8 A 1 -1.76 2 VAL 94 A . ? VAL 94 A PRO 95 A ? PRO 95 A 1 -3.90 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 5 ? C ? 6 ? D ? 4 ? E ? 5 ? F ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 4 ? SER A 7 ? LEU A 4 SER A 7 A 2 VAL A 19 ? THR A 25 ? VAL A 19 THR A 25 A 3 ASP A 70 ? ILE A 75 ? ASP A 70 ILE A 75 A 4 PHE A 62 ? THR A 67 ? PHE A 62 THR A 67 B 1 THR A 53 ? LEU A 54 ? THR A 53 LEU A 54 B 2 LYS A 45 ? SER A 49 ? LYS A 45 SER A 49 B 3 MET A 33 ? GLN A 38 ? MET A 33 GLN A 38 B 4 GLY A 84 ? GLN A 90 ? GLY A 84 GLN A 90 B 5 THR A 97 ? PHE A 98 ? THR A 97 PHE A 98 C 1 THR A 53 ? LEU A 54 ? THR A 53 LEU A 54 C 2 LYS A 45 ? SER A 49 ? LYS A 45 SER A 49 C 3 MET A 33 ? GLN A 38 ? MET A 33 GLN A 38 C 4 GLY A 84 ? GLN A 90 ? GLY A 84 GLN A 90 C 5 THR A 102 ? LEU A 104 ? THR A 102 LEU A 104 C 6 SER A 10 ? LEU A 11 ? SER A 10 LEU A 11 D 1 LYS B 3 ? SER B 7 ? LYS B 303 SER B 307 D 2 LEU B 18 ? SER B 25 ? LEU B 318 SER B 325 D 3 THR B 78 ? MET B 83 ? THR B 378 MET B 383 D 4 PHE B 68 ? GLU B 73 ? PHE B 368 GLU B 373 E 1 SER B 104 ? TRP B 110 ? SER B 404 TRP B 410 E 2 ALA B 92 ? SER B 101 ? ALA B 392 SER B 401 E 3 MET B 34 ? GLN B 39 ? MET B 334 GLN B 339 E 4 LEU B 45 ? ILE B 51 ? LEU B 345 ILE B 351 E 5 THR B 58 ? TYR B 60 ? THR B 358 TYR B 360 F 1 SER B 104 ? TRP B 110 ? SER B 404 TRP B 410 F 2 ALA B 92 ? SER B 101 ? ALA B 392 SER B 401 F 3 THR B 114 ? VAL B 118 ? THR B 414 VAL B 418 F 4 GLY B 10 ? VAL B 12 ? GLY B 310 VAL B 312 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER A 7 ? O SER A 7 N ARG A 22 ? N ARG A 22 A 2 3 O CYS A 23 ? O CYS A 23 N PHE A 71 ? N PHE A 71 A 3 4 N THR A 74 ? N THR A 74 O SER A 63 ? O SER A 63 B 1 2 O THR A 53 ? O THR A 53 N SER A 49 ? N SER A 49 B 2 3 N LEU A 47 ? N LEU A 47 O TRP A 35 ? O TRP A 35 B 3 4 N GLN A 38 ? N GLN A 38 O ASP A 85 ? O ASP A 85 B 4 5 N GLN A 90 ? N GLN A 90 O THR A 97 ? O THR A 97 C 1 2 O THR A 53 ? O THR A 53 N SER A 49 ? N SER A 49 C 2 3 N LEU A 47 ? N LEU A 47 O TRP A 35 ? O TRP A 35 C 3 4 N GLN A 38 ? N GLN A 38 O ASP A 85 ? O ASP A 85 C 4 5 N TYR A 86 ? N TYR A 86 O THR A 102 ? O THR A 102 C 5 6 O LYS A 103 ? O LYS A 103 N LEU A 11 ? N LEU A 11 D 1 2 O SER B 7 ? O SER B 307 N SER B 21 ? N SER B 321 D 2 3 O CYS B 22 ? O CYS B 322 N LEU B 79 ? N LEU B 379 D 3 4 N GLN B 82 ? N GLN B 382 O THR B 69 ? O THR B 369 E 1 2 O TYR B 109 ? O TYR B 409 N ARG B 98 ? N ARG B 398 E 2 3 N THR B 97 ? N THR B 397 O SER B 35 ? O SER B 335 E 3 4 O ARG B 38 ? O ARG B 338 N GLU B 46 ? N GLU B 346 E 4 5 O SER B 50 ? O SER B 350 N TYR B 59 ? N TYR B 359 F 1 2 O TYR B 109 ? O TYR B 409 N ARG B 98 ? N ARG B 398 F 2 3 N TYR B 94 ? N TYR B 394 O THR B 114 ? O THR B 414 F 3 4 N THR B 117 ? N THR B 417 O GLY B 10 ? O GLY B 310 # _database_PDB_matrix.entry_id 1I8I _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1I8I _atom_sites.fract_transf_matrix[1][1] 0.008961 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022075 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009058 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 CYS 23 23 23 CYS CYS A . n A 1 24 MET 24 24 24 MET MET A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 MET 33 33 33 MET MET A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 TRP 35 35 35 TRP TRP A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 PHE 73 73 73 PHE PHE A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 TYR 86 86 86 TYR TYR A . n A 1 87 TYR 87 87 87 TYR TYR A . n A 1 88 CYS 88 88 88 CYS CYS A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 GLN 90 90 90 GLN GLN A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 PHE 92 92 92 PHE PHE A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 PHE 98 98 98 PHE PHE A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 CYS 100 100 100 CYS CYS A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 GLU 105 105 105 GLU GLU A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 LYS 107 107 ? ? ? A . n B 2 1 GLN 1 301 301 GLN GLN B . n B 2 2 VAL 2 302 302 VAL VAL B . n B 2 3 LYS 3 303 303 LYS LYS B . n B 2 4 LEU 4 304 304 LEU LEU B . n B 2 5 GLN 5 305 305 GLN GLN B . n B 2 6 GLN 6 306 306 GLN GLN B . n B 2 7 SER 7 307 307 SER SER B . n B 2 8 GLY 8 308 308 GLY GLY B . n B 2 9 GLY 9 309 309 GLY GLY B . n B 2 10 GLY 10 310 310 GLY GLY B . n B 2 11 LEU 11 311 311 LEU LEU B . n B 2 12 VAL 12 312 312 VAL VAL B . n B 2 13 LYS 13 313 313 LYS LYS B . n B 2 14 PRO 14 314 314 PRO PRO B . n B 2 15 GLY 15 315 315 GLY GLY B . n B 2 16 ALA 16 316 316 ALA ALA B . n B 2 17 SER 17 317 317 SER SER B . n B 2 18 LEU 18 318 318 LEU LEU B . n B 2 19 LYS 19 319 319 LYS LYS B . n B 2 20 LEU 20 320 320 LEU LEU B . n B 2 21 SER 21 321 321 SER SER B . n B 2 22 CYS 22 322 322 CYS CYS B . n B 2 23 VAL 23 323 323 VAL VAL B . n B 2 24 THR 24 324 324 THR THR B . n B 2 25 SER 25 325 325 SER SER B . n B 2 26 GLY 26 326 326 GLY GLY B . n B 2 27 PHE 27 327 327 PHE PHE B . n B 2 28 THR 28 328 328 THR THR B . n B 2 29 PHE 29 329 329 PHE PHE B . n B 2 30 ARG 30 330 330 ARG ARG B . n B 2 31 LYS 31 331 331 LYS LYS B . n B 2 32 PHE 32 332 332 PHE PHE B . n B 2 33 GLY 33 333 333 GLY GLY B . n B 2 34 MET 34 334 334 MET MET B . n B 2 35 SER 35 335 335 SER SER B . n B 2 36 TRP 36 336 336 TRP TRP B . n B 2 37 VAL 37 337 337 VAL VAL B . n B 2 38 ARG 38 338 338 ARG ARG B . n B 2 39 GLN 39 339 339 GLN GLN B . n B 2 40 THR 40 340 340 THR THR B . n B 2 41 SER 41 341 341 SER SER B . n B 2 42 ASP 42 342 342 ASP ASP B . n B 2 43 LYS 43 343 343 LYS LYS B . n B 2 44 CYS 44 344 344 CYS CYS B . n B 2 45 LEU 45 345 345 LEU LEU B . n B 2 46 GLU 46 346 346 GLU GLU B . n B 2 47 TRP 47 347 347 TRP TRP B . n B 2 48 VAL 48 348 348 VAL VAL B . n B 2 49 ALA 49 349 349 ALA ALA B . n B 2 50 SER 50 350 350 SER SER B . n B 2 51 ILE 51 351 351 ILE ILE B . n B 2 52 SER 52 352 354 SER SER B . n B 2 53 THR 53 353 355 THR THR B . n B 2 54 GLY 54 354 356 GLY GLY B . n B 2 55 GLY 55 355 357 GLY GLY B . n B 2 56 TYR 56 356 358 TYR TYR B . n B 2 57 ASN 57 357 359 ASN ASN B . n B 2 58 THR 58 358 360 THR THR B . n B 2 59 TYR 59 359 361 TYR TYR B . n B 2 60 TYR 60 360 362 TYR TYR B . n B 2 61 SER 61 361 363 SER SER B . n B 2 62 ASP 62 362 364 ASP ASP B . n B 2 63 ASN 63 363 365 ASN ASN B . n B 2 64 VAL 64 364 366 VAL VAL B . n B 2 65 LYS 65 365 367 LYS LYS B . n B 2 66 GLY 66 366 368 GLY GLY B . n B 2 67 ARG 67 367 369 ARG ARG B . n B 2 68 PHE 68 368 370 PHE PHE B . n B 2 69 THR 69 369 371 THR THR B . n B 2 70 ILE 70 370 372 ILE ILE B . n B 2 71 SER 71 371 373 SER SER B . n B 2 72 ARG 72 372 374 ARG ARG B . n B 2 73 GLU 73 373 375 GLU GLU B . n B 2 74 ASN 74 374 376 ASN ASN B . n B 2 75 ALA 75 375 377 ALA ALA B . n B 2 76 LYS 76 376 378 LYS LYS B . n B 2 77 ASN 77 377 379 ASN ASN B . n B 2 78 THR 78 378 380 THR THR B . n B 2 79 LEU 79 379 381 LEU LEU B . n B 2 80 TYR 80 380 382 TYR TYR B . n B 2 81 LEU 81 381 383 LEU LEU B . n B 2 82 GLN 82 382 384 GLN GLN B . n B 2 83 MET 83 383 385 MET MET B . n B 2 84 SER 84 384 386 SER SER B . n B 2 85 SER 85 385 387 SER SER B . n B 2 86 LEU 86 386 388 LEU LEU B . n B 2 87 LYS 87 387 389 LYS LYS B . n B 2 88 SER 88 388 390 SER SER B . n B 2 89 GLU 89 389 391 GLU GLU B . n B 2 90 ASP 90 390 392 ASP ASP B . n B 2 91 THR 91 391 393 THR THR B . n B 2 92 ALA 92 392 394 ALA ALA B . n B 2 93 LEU 93 393 395 LEU LEU B . n B 2 94 TYR 94 394 396 TYR TYR B . n B 2 95 TYR 95 395 397 TYR TYR B . n B 2 96 CYS 96 396 398 CYS CYS B . n B 2 97 THR 97 397 399 THR THR B . n B 2 98 ARG 98 398 400 ARG ARG B . n B 2 99 GLY 99 399 401 GLY GLY B . n B 2 100 TYR 100 400 402 TYR TYR B . n B 2 101 SER 101 401 403 SER SER B . n B 2 102 SER 102 402 404 SER SER B . n B 2 103 THR 103 403 405 THR THR B . n B 2 104 SER 104 404 406 SER SER B . n B 2 105 TYR 105 405 407 TYR TYR B . n B 2 106 ALA 106 406 408 ALA ALA B . n B 2 107 MET 107 407 409 MET MET B . n B 2 108 ASP 108 408 410 ASP ASP B . n B 2 109 TYR 109 409 411 TYR TYR B . n B 2 110 TRP 110 410 412 TRP TRP B . n B 2 111 GLY 111 411 413 GLY GLY B . n B 2 112 GLN 112 412 414 GLN GLN B . n B 2 113 GLY 113 413 415 GLY GLY B . n B 2 114 THR 114 414 416 THR THR B . n B 2 115 THR 115 415 417 THR THR B . n B 2 116 VAL 116 416 418 VAL VAL B . n B 2 117 THR 117 417 419 THR THR B . n B 2 118 VAL 118 418 420 VAL VAL B . n B 2 119 SER 119 419 421 SER SER B . n B 2 120 GLY 120 420 ? ? ? B . n B 2 121 ILE 121 421 ? ? ? B . n B 2 122 GLU 122 422 ? ? ? B . n B 2 123 GLY 123 423 ? ? ? B . n B 2 124 ARG 124 424 ? ? ? B . n C 3 1 GLU 1 499 ? ? ? C . n C 3 2 GLU 2 500 ? ? ? C . n C 3 3 LYS 3 501 ? ? ? C . n C 3 4 LYS 4 502 502 LYS LYS C . n C 3 5 GLY 5 503 503 GLY GLY C . n C 3 6 ASN 6 504 504 ASN ASN C . n C 3 7 TYR 7 505 505 TYR TYR C . n C 3 8 VAL 8 506 506 VAL VAL C . n C 3 9 VAL 9 507 507 VAL VAL C . n C 3 10 THR 10 508 508 THR THR C . n C 3 11 ASP 11 509 509 ASP ASP C . n C 3 12 HIS 12 510 510 HIS HIS C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 601 601 HOH WAT A . D 4 HOH 2 602 602 HOH WAT A . D 4 HOH 3 604 604 HOH WAT A . D 4 HOH 4 607 607 HOH WAT A . D 4 HOH 5 613 613 HOH WAT A . D 4 HOH 6 618 618 HOH WAT A . D 4 HOH 7 625 625 HOH WAT A . D 4 HOH 8 631 631 HOH WAT A . D 4 HOH 9 633 633 HOH WAT A . D 4 HOH 10 634 634 HOH WAT A . D 4 HOH 11 635 635 HOH WAT A . D 4 HOH 12 637 637 HOH WAT A . D 4 HOH 13 641 641 HOH WAT A . D 4 HOH 14 649 649 HOH WAT A . D 4 HOH 15 651 651 HOH WAT A . D 4 HOH 16 653 653 HOH WAT A . D 4 HOH 17 654 654 HOH WAT A . D 4 HOH 18 655 655 HOH WAT A . D 4 HOH 19 656 656 HOH WAT A . D 4 HOH 20 657 657 HOH WAT A . D 4 HOH 21 658 658 HOH WAT A . D 4 HOH 22 659 659 HOH WAT A . D 4 HOH 23 660 660 HOH WAT A . D 4 HOH 24 664 664 HOH WAT A . D 4 HOH 25 666 666 HOH WAT A . D 4 HOH 26 668 668 HOH WAT A . D 4 HOH 27 673 673 HOH WAT A . D 4 HOH 28 674 674 HOH WAT A . D 4 HOH 29 684 684 HOH WAT A . E 4 HOH 1 600 600 HOH WAT B . E 4 HOH 2 603 603 HOH WAT B . E 4 HOH 3 605 605 HOH WAT B . E 4 HOH 4 606 606 HOH WAT B . E 4 HOH 5 608 608 HOH WAT B . E 4 HOH 6 609 609 HOH WAT B . E 4 HOH 7 610 610 HOH WAT B . E 4 HOH 8 612 612 HOH WAT B . E 4 HOH 9 614 614 HOH WAT B . E 4 HOH 10 615 615 HOH WAT B . E 4 HOH 11 616 616 HOH WAT B . E 4 HOH 12 617 617 HOH WAT B . E 4 HOH 13 619 619 HOH WAT B . E 4 HOH 14 620 620 HOH WAT B . E 4 HOH 15 621 621 HOH WAT B . E 4 HOH 16 622 622 HOH WAT B . E 4 HOH 17 623 623 HOH WAT B . E 4 HOH 18 624 624 HOH WAT B . E 4 HOH 19 626 626 HOH WAT B . E 4 HOH 20 627 627 HOH WAT B . E 4 HOH 21 628 628 HOH WAT B . E 4 HOH 22 629 629 HOH WAT B . E 4 HOH 23 630 630 HOH WAT B . E 4 HOH 24 632 632 HOH WAT B . E 4 HOH 25 636 636 HOH WAT B . E 4 HOH 26 638 638 HOH WAT B . E 4 HOH 27 640 640 HOH WAT B . E 4 HOH 28 642 642 HOH WAT B . E 4 HOH 29 643 643 HOH WAT B . E 4 HOH 30 644 644 HOH WAT B . E 4 HOH 31 645 645 HOH WAT B . E 4 HOH 32 646 646 HOH WAT B . E 4 HOH 33 647 647 HOH WAT B . E 4 HOH 34 648 648 HOH WAT B . E 4 HOH 35 650 650 HOH WAT B . E 4 HOH 36 652 652 HOH WAT B . E 4 HOH 37 661 661 HOH WAT B . E 4 HOH 38 663 663 HOH WAT B . E 4 HOH 39 665 665 HOH WAT B . E 4 HOH 40 667 667 HOH WAT B . E 4 HOH 41 669 669 HOH WAT B . E 4 HOH 42 670 670 HOH WAT B . E 4 HOH 43 671 671 HOH WAT B . E 4 HOH 44 672 672 HOH WAT B . E 4 HOH 45 675 675 HOH WAT B . E 4 HOH 46 676 676 HOH WAT B . E 4 HOH 47 677 677 HOH WAT B . E 4 HOH 48 678 678 HOH WAT B . E 4 HOH 49 679 679 HOH WAT B . E 4 HOH 50 680 680 HOH WAT B . E 4 HOH 51 681 681 HOH WAT B . E 4 HOH 52 682 682 HOH WAT B . E 4 HOH 53 683 683 HOH WAT B . F 4 HOH 1 611 611 HOH WAT C . F 4 HOH 2 639 639 HOH WAT C . F 4 HOH 3 662 662 HOH WAT C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2850 ? 1 MORE -17 ? 1 'SSA (A^2)' 10130 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-03-14 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-10-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 MERLOT phasing . ? 3 X-PLOR refinement . ? 4 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE Residues 100 of chain A and 344 of chain B have been mutated to Cys residues to introduce a disulfide bridge between chains A and B. There is no sequence database match for chain C because the sequence of EGFRvIII has not yet been deposited in any database. The DNA sequence of the normal EGF receptor has been deposited (NM_005228). ; # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A ASP 1 ? ? CA A ASP 1 ? ? C A ASP 1 ? ? 94.66 111.00 -16.34 2.70 N 2 1 CD1 A TRP 35 ? ? CG A TRP 35 ? ? CD2 A TRP 35 ? ? 113.12 106.30 6.82 0.80 N 3 1 CE2 A TRP 35 ? ? CD2 A TRP 35 ? ? CG A TRP 35 ? ? 101.33 107.30 -5.97 0.80 N 4 1 CB A TYR 36 ? ? CG A TYR 36 ? ? CD1 A TYR 36 ? ? 116.96 121.00 -4.04 0.60 N 5 1 CB A TYR 86 ? ? CG A TYR 86 ? ? CD1 A TYR 86 ? ? 117.08 121.00 -3.92 0.60 N 6 1 CA A LYS 103 ? ? CB A LYS 103 ? ? CG A LYS 103 ? ? 127.12 113.40 13.72 2.20 N 7 1 CA A LEU 104 ? ? CB A LEU 104 ? ? CG A LEU 104 ? ? 129.87 115.30 14.57 2.30 N 8 1 CD1 B TRP 336 ? ? CG B TRP 336 ? ? CD2 B TRP 336 ? ? 111.63 106.30 5.33 0.80 N 9 1 CE2 B TRP 336 ? ? CD2 B TRP 336 ? ? CG B TRP 336 ? ? 101.92 107.30 -5.38 0.80 N 10 1 NE B ARG 338 ? ? CZ B ARG 338 ? ? NH2 B ARG 338 ? ? 115.35 120.30 -4.95 0.50 N 11 1 CA B CYS 344 ? ? CB B CYS 344 ? ? SG B CYS 344 ? ? 121.22 114.20 7.02 1.10 N 12 1 CD1 B TRP 347 ? ? CG B TRP 347 ? ? CD2 B TRP 347 ? ? 113.17 106.30 6.87 0.80 N 13 1 CG B TRP 347 ? ? CD1 B TRP 347 ? ? NE1 B TRP 347 ? ? 103.63 110.10 -6.47 1.00 N 14 1 CE2 B TRP 347 ? ? CD2 B TRP 347 ? ? CG B TRP 347 ? ? 102.37 107.30 -4.93 0.80 N 15 1 NE B ARG 372 ? ? CZ B ARG 372 ? ? NH1 B ARG 372 ? ? 125.86 120.30 5.56 0.50 N 16 1 NE B ARG 372 ? ? CZ B ARG 372 ? ? NH2 B ARG 372 ? ? 114.50 120.30 -5.80 0.50 N 17 1 N B THR 397 ? ? CA B THR 397 ? ? CB B THR 397 ? ? 98.60 110.30 -11.70 1.90 N 18 1 NE B ARG 398 ? ? CZ B ARG 398 ? ? NH1 B ARG 398 ? ? 125.37 120.30 5.07 0.50 N 19 1 NE B ARG 398 ? ? CZ B ARG 398 ? ? NH2 B ARG 398 ? ? 117.13 120.30 -3.17 0.50 N 20 1 N B SER 402 ? ? CA B SER 402 ? ? C B SER 402 ? ? 129.71 111.00 18.71 2.70 N 21 1 N B THR 403 ? ? CA B THR 403 ? ? CB B THR 403 ? ? 98.14 110.30 -12.16 1.90 N 22 1 CD1 B TRP 410 ? ? CG B TRP 410 ? ? CD2 B TRP 410 ? ? 112.71 106.30 6.41 0.80 N 23 1 CE2 B TRP 410 ? ? CD2 B TRP 410 ? ? CG B TRP 410 ? ? 101.73 107.30 -5.57 0.80 N 24 1 CG1 B VAL 416 ? ? CB B VAL 416 ? ? CG2 B VAL 416 ? ? 120.69 110.90 9.79 1.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 50 ? ? -36.75 129.86 2 1 GLU A 105 ? ? 45.09 79.31 3 1 ALA B 316 ? ? -68.49 -179.67 4 1 ASP B 342 ? ? -95.56 33.79 5 1 LYS B 343 ? ? 48.44 3.69 6 1 SER B 401 ? ? -173.50 129.91 7 1 SER B 402 ? ? 21.23 -31.32 8 1 ASN C 504 ? ? 26.57 84.00 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id TYR _pdbx_validate_planes.auth_asym_id C _pdbx_validate_planes.auth_seq_id 505 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.084 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 107 ? A LYS 107 2 1 Y 1 B GLY 420 ? B GLY 120 3 1 Y 1 B ILE 421 ? B ILE 121 4 1 Y 1 B GLU 422 ? B GLU 122 5 1 Y 1 B GLY 423 ? B GLY 123 6 1 Y 1 B ARG 424 ? B ARG 124 7 1 Y 1 C GLU 499 ? C GLU 1 8 1 Y 1 C GLU 500 ? C GLU 2 9 1 Y 1 C LYS 501 ? C LYS 3 # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #