data_1I9F # _entry.id 1I9F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1I9F pdb_00001i9f 10.2210/pdb1i9f/pdb RCSB RCSB013070 ? ? WWPDB D_1000013070 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1I9F _pdbx_database_status.recvd_initial_deposition_date 2001-03-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, Q.' 1 'Harada, K.' 2 'Cho, H.S.' 3 'Frankel, A.' 4 'Wemmer, D.E.' 5 # _citation.id primary _citation.title 'Structural characterization of the complex of the Rev response element RNA with a selected peptide.' _citation.journal_abbrev Chem.Biol. _citation.journal_volume 8 _citation.page_first 511 _citation.page_last 520 _citation.year 2001 _citation.journal_id_ASTM CBOLE2 _citation.country UK _citation.journal_id_ISSN 1074-5521 _citation.journal_id_CSD 2050 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11358697 _citation.pdbx_database_id_DOI '10.1016/S1074-5521(01)00027-8' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, Q.' 1 ? primary 'Harada, K.' 2 ? primary 'Cho, H.S.' 3 ? primary 'Frankel, A.D.' 4 ? primary 'Wemmer, D.E.' 5 ? # _cell.entry_id 1I9F _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I9F _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'REV RESPONSE ELEMENT RNA' 11039.639 1 ? ? ? '34-MER RNA' 2 polymer syn 'RSG-1.2 PEPTIDE' 2145.442 1 ? ? ? '19-MER PEPTIDE' # _entity_name_com.entity_id 1 _entity_name_com.name 'RRE, HIV-1 RRE RNA' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGUCUGGGCGCAGCGCAAGCUGACGGUACAGGCC GGUCUGGGCGCAGCGCAAGCUGACGGUACAGGCC A ? 2 'polypeptide(L)' no no RRGSRPSGAERRRRRAAAA RRGSRPSGAERRRRRAAAA B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 U n 1 4 C n 1 5 U n 1 6 G n 1 7 G n 1 8 G n 1 9 C n 1 10 G n 1 11 C n 1 12 A n 1 13 G n 1 14 C n 1 15 G n 1 16 C n 1 17 A n 1 18 A n 1 19 G n 1 20 C n 1 21 U n 1 22 G n 1 23 A n 1 24 C n 1 25 G n 1 26 G n 1 27 U n 1 28 A n 1 29 C n 1 30 A n 1 31 G n 1 32 G n 1 33 C n 1 34 C n 2 1 ARG n 2 2 ARG n 2 3 GLY n 2 4 SER n 2 5 ARG n 2 6 PRO n 2 7 SER n 2 8 GLY n 2 9 ALA n 2 10 GLU n 2 11 ARG n 2 12 ARG n 2 13 ARG n 2 14 ARG n 2 15 ARG n 2 16 ALA n 2 17 ALA n 2 18 ALA n 2 19 ALA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'sequence naturally occurs in HUMAN IMMUNODEFICIENCY VIRUS TYPE 1, strain DH5a' # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1I9F 1I9F ? ? ? 2 2 PDB 1I9F 1I9F ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1I9F A 1 ? 34 ? 1I9F 1 ? 34 ? 1 34 2 2 1I9F B 1 ? 19 ? 1I9F 201 ? 219 ? 201 219 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 1 1 3D_13C-separated_NOESY 3 1 1 3D_15N-separated_NOESY 4 1 1 DQF-COSY 5 1 1 HNCA-J # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength '20mM sodium phosphate, 100 mM sodium chloride' _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.6 mM RNA/peptide' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O, 20 mM sodium phosphate, 100 mM sodium chloride, 0.1 mM EDTA, pH 6.5' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? ? ? 500 2 ? ? ? 600 # _pdbx_nmr_ensemble.entry_id 1I9F _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 7 _pdbx_nmr_ensemble.conformer_selection_criteria ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1I9F _pdbx_nmr_representative.conformer_id ? _pdbx_nmr_representative.selection_criteria 'fewest violations, lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XEASY ? 'data analysis' ? 1 Felix ? 'data analysis' ? 2 # _exptl.entry_id 1I9F _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1I9F _struct.title 'STRUCTURAL CHARACTERIZATION OF THE COMPLEX OF THE REV RESPONSE ELEMENT RNA WITH A SELECTED PEPTIDE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1I9F _struct_keywords.pdbx_keywords 'DE-NOVO PROTEIN/RNA' _struct_keywords.text 'peptide-RNA complex, RNA recognition, selected peptide, solution structure, DE-NOVO PROTEIN-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id SER _struct_conf.beg_label_asym_id B _struct_conf.beg_label_seq_id 7 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ALA _struct_conf.end_label_asym_id B _struct_conf.end_label_seq_id 19 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id SER _struct_conf.beg_auth_asym_id B _struct_conf.beg_auth_seq_id 207 _struct_conf.end_auth_comp_id ALA _struct_conf.end_auth_asym_id B _struct_conf.end_auth_seq_id 219 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 34 N3 ? ? A G 1 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 34 O2 ? ? A G 1 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 34 N4 ? ? A G 1 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 33 O2 ? ? A G 2 A C 33 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog5 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 34 N3 ? ? A G 2 A C 34 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog6 hydrog ? ? A U 3 N3 ? ? ? 1_555 A G 32 O6 ? ? A U 3 A G 32 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog7 hydrog ? ? A U 3 O2 ? ? ? 1_555 A G 32 N1 ? ? A U 3 A G 32 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 31 N1 ? ? A C 4 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 31 O6 ? ? A C 4 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 31 N2 ? ? A C 4 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 30 N1 ? ? A U 5 A A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 30 N6 ? ? A U 5 A A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 6 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 6 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 6 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N1 ? ? ? 1_555 A A 28 N1 ? ? A G 7 A A 28 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog17 hydrog ? ? A G 7 O6 ? ? ? 1_555 A A 28 N6 ? ? A G 7 A A 28 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog18 hydrog ? ? A G 8 N1 ? ? ? 1_555 A G 26 O6 ? ? A G 8 A G 26 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog19 hydrog ? ? A G 8 O6 ? ? ? 1_555 A G 26 N1 ? ? A G 8 A G 26 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog20 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 25 N1 ? ? A C 9 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 25 O6 ? ? A C 9 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 25 N2 ? ? A C 9 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 24 N3 ? ? A G 10 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 24 O2 ? ? A G 10 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 24 N4 ? ? A G 10 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 22 N1 ? ? A C 11 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 22 O6 ? ? A C 11 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 22 N2 ? ? A C 11 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A A 12 N1 ? ? ? 1_555 A U 21 N3 ? ? A A 12 A U 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A A 12 N6 ? ? ? 1_555 A U 21 O4 ? ? A A 12 A U 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 20 N3 ? ? A G 13 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 20 O2 ? ? A G 13 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 20 N4 ? ? A G 13 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 13 N2 ? ? ? 1_555 A U 21 O2 ? ? A G 13 A U 21 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog35 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 19 N1 ? ? A C 14 A G 19 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog36 hydrog ? ? A G 15 N2 ? ? ? 1_555 A A 18 N7 ? ? A G 15 A A 18 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog37 hydrog ? ? A G 15 N3 ? ? ? 1_555 A A 18 N6 ? ? A G 15 A A 18 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1I9F _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1I9F _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 C 4 4 4 C C A . n A 1 5 U 5 5 5 U U A . n A 1 6 G 6 6 6 G G A . n A 1 7 G 7 7 7 G G A . n A 1 8 G 8 8 8 G G A . n A 1 9 C 9 9 9 C C A . n A 1 10 G 10 10 10 G G A . n A 1 11 C 11 11 11 C C A . n A 1 12 A 12 12 12 A A A . n A 1 13 G 13 13 13 G G A . n A 1 14 C 14 14 14 C C A . n A 1 15 G 15 15 15 G G A . n A 1 16 C 16 16 16 C C A . n A 1 17 A 17 17 17 A A A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 C 20 20 20 C C A . n A 1 21 U 21 21 21 U U A . n A 1 22 G 22 22 22 G G A . n A 1 23 A 23 23 23 A A A . n A 1 24 C 24 24 24 C C A . n A 1 25 G 25 25 25 G G A . n A 1 26 G 26 26 26 G G A . n A 1 27 U 27 27 27 U U A . n A 1 28 A 28 28 28 A A A . n A 1 29 C 29 29 29 C C A . n A 1 30 A 30 30 30 A A A . n A 1 31 G 31 31 31 G G A . n A 1 32 G 32 32 32 G G A . n A 1 33 C 33 33 33 C C A . n A 1 34 C 34 34 34 C C A . n B 2 1 ARG 1 201 201 ARG ARG B . n B 2 2 ARG 2 202 202 ARG ARG B . n B 2 3 GLY 3 203 203 GLY GLY B . n B 2 4 SER 4 204 204 SER SER B . n B 2 5 ARG 5 205 205 ARG ARG B . n B 2 6 PRO 6 206 206 PRO PRO B . n B 2 7 SER 7 207 207 SER SER B . n B 2 8 GLY 8 208 208 GLY GLY B . n B 2 9 ALA 9 209 209 ALA ALA B . n B 2 10 GLU 10 210 210 GLU GLU B . n B 2 11 ARG 11 211 211 ARG ARG B . n B 2 12 ARG 12 212 212 ARG ARG B . n B 2 13 ARG 13 213 213 ARG ARG B . n B 2 14 ARG 14 214 214 ARG ARG B . n B 2 15 ARG 15 215 215 ARG ARG B . n B 2 16 ALA 16 216 216 ALA ALA B . n B 2 17 ALA 17 217 217 ALA ALA B . n B 2 18 ALA 18 218 218 ALA ALA B . n B 2 19 ALA 19 219 219 ALA ALA B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-05-25 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 "HO2'" A G 8 ? ? OP2 A C 9 ? ? 1.58 2 3 OP2 A G 25 ? ? "HO2'" A G 26 ? ? 1.57 3 5 OP2 A G 25 ? ? "HO2'" A G 26 ? ? 1.60 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A G 1 ? ? "C1'" A G 1 ? ? N9 A G 1 ? ? 114.49 108.50 5.99 0.70 N 2 1 "C5'" A G 2 ? ? "C4'" A G 2 ? ? "O4'" A G 2 ? ? 115.96 109.80 6.16 0.90 N 3 1 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.70 108.50 4.20 0.70 N 4 1 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 112.97 108.50 4.47 0.70 N 5 1 N3 A G 7 ? ? C2 A G 7 ? ? N2 A G 7 ? ? 115.69 119.90 -4.21 0.70 N 6 1 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 114.61 108.50 6.11 0.70 N 7 1 "O4'" A G 13 ? ? "C1'" A G 13 ? ? N9 A G 13 ? ? 113.71 108.50 5.21 0.70 N 8 1 "O4'" A G 15 ? ? "C1'" A G 15 ? ? N9 A G 15 ? ? 112.75 108.50 4.25 0.70 N 9 1 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.05 108.50 4.55 0.70 N 10 1 "O4'" A G 19 ? ? "C1'" A G 19 ? ? N9 A G 19 ? ? 113.90 108.50 5.40 0.70 N 11 1 N1 A C 20 ? ? C2 A C 20 ? ? O2 A C 20 ? ? 123.60 118.90 4.70 0.60 N 12 1 N3 A C 20 ? ? C2 A C 20 ? ? O2 A C 20 ? ? 117.12 121.90 -4.78 0.70 N 13 1 "O4'" A C 24 ? ? "C1'" A C 24 ? ? N1 A C 24 ? ? 112.74 108.50 4.24 0.70 N 14 1 "O4'" A G 25 ? ? "C1'" A G 25 ? ? N9 A G 25 ? ? 114.26 108.50 5.76 0.70 N 15 1 "O4'" A C 33 ? ? "C1'" A C 33 ? ? N1 A C 33 ? ? 112.71 108.50 4.21 0.70 N 16 1 "O4'" A C 34 ? ? "C1'" A C 34 ? ? N1 A C 34 ? ? 113.18 108.50 4.68 0.70 N 17 1 NE B ARG 202 ? ? CZ B ARG 202 ? ? NH2 B ARG 202 ? ? 117.08 120.30 -3.22 0.50 N 18 2 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.81 108.50 5.31 0.70 N 19 2 "O4'" A G 10 ? ? "C1'" A G 10 ? ? N9 A G 10 ? ? 114.53 108.50 6.03 0.70 N 20 2 "O4'" A G 15 ? ? "C1'" A G 15 ? ? N9 A G 15 ? ? 113.58 108.50 5.08 0.70 N 21 2 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.07 108.50 4.57 0.70 N 22 2 "O4'" A G 19 ? ? "C1'" A G 19 ? ? N9 A G 19 ? ? 114.89 108.50 6.39 0.70 N 23 2 "O4'" A C 20 ? ? "C1'" A C 20 ? ? N1 A C 20 ? ? 112.88 108.50 4.38 0.70 N 24 2 N1 A C 20 ? ? C2 A C 20 ? ? O2 A C 20 ? ? 122.56 118.90 3.66 0.60 N 25 2 "O4'" A A 23 ? ? "C1'" A A 23 ? ? N9 A A 23 ? ? 113.72 108.50 5.22 0.70 N 26 2 "O4'" A G 31 ? ? "C1'" A G 31 ? ? N9 A G 31 ? ? 112.80 108.50 4.30 0.70 N 27 2 "O4'" A C 33 ? ? "C1'" A C 33 ? ? N1 A C 33 ? ? 113.04 108.50 4.54 0.70 N 28 3 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 113.68 108.50 5.18 0.70 N 29 3 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 113.89 108.50 5.39 0.70 N 30 3 "O4'" A C 4 ? ? "C1'" A C 4 ? ? N1 A C 4 ? ? 114.69 108.50 6.19 0.70 N 31 3 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 114.33 108.50 5.83 0.70 N 32 3 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 114.63 108.50 6.13 0.70 N 33 3 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 116.80 108.50 8.30 0.70 N 34 3 "O4'" A G 10 ? ? "C1'" A G 10 ? ? N9 A G 10 ? ? 113.26 108.50 4.76 0.70 N 35 3 "O4'" A C 11 ? ? "C1'" A C 11 ? ? N1 A C 11 ? ? 114.82 108.50 6.32 0.70 N 36 3 N1 A C 11 ? ? C2 A C 11 ? ? O2 A C 11 ? ? 123.06 118.90 4.16 0.60 N 37 3 "O4'" A A 12 ? ? "C1'" A A 12 ? ? N9 A A 12 ? ? 113.56 108.50 5.06 0.70 N 38 3 "O4'" A G 13 ? ? "C1'" A G 13 ? ? N9 A G 13 ? ? 114.03 108.50 5.53 0.70 N 39 3 "O4'" A G 15 ? ? "C1'" A G 15 ? ? N9 A G 15 ? ? 113.99 108.50 5.49 0.70 N 40 3 N3 A G 15 ? ? C2 A G 15 ? ? N2 A G 15 ? ? 115.68 119.90 -4.22 0.70 N 41 3 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.08 108.50 4.58 0.70 N 42 3 "O4'" A G 19 ? ? "C1'" A G 19 ? ? N9 A G 19 ? ? 113.23 108.50 4.73 0.70 N 43 3 "O4'" A G 22 ? ? "C1'" A G 22 ? ? N9 A G 22 ? ? 113.60 108.50 5.10 0.70 N 44 3 "C1'" A A 23 ? ? "O4'" A A 23 ? ? "C4'" A A 23 ? ? 105.22 109.70 -4.48 0.70 N 45 3 "O4'" A A 23 ? ? "C1'" A A 23 ? ? N9 A A 23 ? ? 114.06 108.50 5.56 0.70 N 46 3 "O4'" A C 24 ? ? "C1'" A C 24 ? ? N1 A C 24 ? ? 113.08 108.50 4.58 0.70 N 47 3 "O4'" A G 31 ? ? "C1'" A G 31 ? ? N9 A G 31 ? ? 113.55 108.50 5.05 0.70 N 48 3 "O4'" A G 32 ? ? "C1'" A G 32 ? ? N9 A G 32 ? ? 113.29 108.50 4.79 0.70 N 49 4 "O4'" A G 1 ? ? "C1'" A G 1 ? ? N9 A G 1 ? ? 113.37 108.50 4.87 0.70 N 50 4 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 114.33 108.50 5.83 0.70 N 51 4 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 113.31 108.50 4.81 0.70 N 52 4 "C1'" A C 9 ? ? "O4'" A C 9 ? ? "C4'" A C 9 ? ? 105.02 109.70 -4.68 0.70 N 53 4 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 115.18 108.50 6.68 0.70 N 54 4 "O4'" A G 10 ? ? "C1'" A G 10 ? ? N9 A G 10 ? ? 113.46 108.50 4.96 0.70 N 55 4 "O4'" A C 11 ? ? "C1'" A C 11 ? ? N1 A C 11 ? ? 113.68 108.50 5.18 0.70 N 56 4 "O4'" A A 12 ? ? "C1'" A A 12 ? ? N9 A A 12 ? ? 112.91 108.50 4.41 0.70 N 57 4 "O4'" A G 13 ? ? "C1'" A G 13 ? ? N9 A G 13 ? ? 114.63 108.50 6.13 0.70 N 58 4 "O4'" A G 15 ? ? "C1'" A G 15 ? ? N9 A G 15 ? ? 114.35 108.50 5.85 0.70 N 59 4 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.90 108.50 5.40 0.70 N 60 4 "O4'" A A 18 ? ? "C1'" A A 18 ? ? N9 A A 18 ? ? 113.07 108.50 4.57 0.70 N 61 4 "C5'" A C 20 ? ? "C4'" A C 20 ? ? "C3'" A C 20 ? ? 105.10 115.20 -10.10 1.40 N 62 4 N1 A C 20 ? ? C2 A C 20 ? ? O2 A C 20 ? ? 122.60 118.90 3.70 0.60 N 63 4 "O4'" A U 21 ? ? "C1'" A U 21 ? ? N1 A U 21 ? ? 113.74 108.50 5.24 0.70 N 64 4 "O4'" A C 29 ? ? "C1'" A C 29 ? ? N1 A C 29 ? ? 112.93 108.50 4.43 0.70 N 65 4 "O4'" A G 31 ? ? "C1'" A G 31 ? ? N9 A G 31 ? ? 112.90 108.50 4.40 0.70 N 66 4 "O4'" A C 33 ? ? "C1'" A C 33 ? ? N1 A C 33 ? ? 113.72 108.50 5.22 0.70 N 67 5 "O4'" A G 1 ? ? "C1'" A G 1 ? ? N9 A G 1 ? ? 112.72 108.50 4.22 0.70 N 68 5 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.73 108.50 4.23 0.70 N 69 5 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.31 108.50 5.81 0.70 N 70 5 "O4'" A C 4 ? ? "C1'" A C 4 ? ? N1 A C 4 ? ? 113.99 108.50 5.49 0.70 N 71 5 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 113.60 108.50 5.10 0.70 N 72 5 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 113.86 108.50 5.36 0.70 N 73 5 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 115.05 108.50 6.55 0.70 N 74 5 "C5'" A C 9 ? ? "C4'" A C 9 ? ? "O4'" A C 9 ? ? 115.29 109.80 5.49 0.90 N 75 5 "C4'" A C 9 ? ? "C3'" A C 9 ? ? "C2'" A C 9 ? ? 95.99 102.60 -6.61 1.00 N 76 5 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 114.72 108.50 6.22 0.70 N 77 5 N1 A C 9 ? ? C2 A C 9 ? ? O2 A C 9 ? ? 123.30 118.90 4.40 0.60 N 78 5 N3 A C 9 ? ? C2 A C 9 ? ? O2 A C 9 ? ? 116.95 121.90 -4.95 0.70 N 79 5 "O4'" A G 10 ? ? "C1'" A G 10 ? ? N9 A G 10 ? ? 114.25 108.50 5.75 0.70 N 80 5 C8 A G 10 ? ? N9 A G 10 ? ? C4 A G 10 ? ? 103.68 106.40 -2.72 0.40 N 81 5 "C3'" A C 11 ? ? "C2'" A C 11 ? ? "C1'" A C 11 ? ? 107.05 101.50 5.55 0.80 N 82 5 "O4'" A G 13 ? ? "C1'" A G 13 ? ? N9 A G 13 ? ? 114.28 108.50 5.78 0.70 N 83 5 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.33 108.50 4.83 0.70 N 84 5 "O4'" A C 20 ? ? "C1'" A C 20 ? ? N1 A C 20 ? ? 113.22 108.50 4.72 0.70 N 85 5 N1 A C 20 ? ? C2 A C 20 ? ? O2 A C 20 ? ? 122.51 118.90 3.61 0.60 N 86 5 "O4'" A A 23 ? ? "C1'" A A 23 ? ? N9 A A 23 ? ? 113.13 108.50 4.63 0.70 N 87 5 "O4'" A C 24 ? ? "C1'" A C 24 ? ? N1 A C 24 ? ? 113.65 108.50 5.15 0.70 N 88 5 "O4'" A G 25 ? ? "C1'" A G 25 ? ? N9 A G 25 ? ? 112.71 108.50 4.21 0.70 N 89 5 N3 A G 26 ? ? C2 A G 26 ? ? N2 A G 26 ? ? 115.65 119.90 -4.25 0.70 N 90 5 "O4'" A C 29 ? ? "C1'" A C 29 ? ? N1 A C 29 ? ? 113.20 108.50 4.70 0.70 N 91 6 "O4'" A C 4 ? ? "C1'" A C 4 ? ? N1 A C 4 ? ? 112.84 108.50 4.34 0.70 N 92 6 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 114.92 108.50 6.42 0.70 N 93 6 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 113.33 108.50 4.83 0.70 N 94 6 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.02 108.50 4.52 0.70 N 95 6 "O4'" A G 10 ? ? "C1'" A G 10 ? ? N9 A G 10 ? ? 112.98 108.50 4.48 0.70 N 96 6 "O4'" A C 11 ? ? "C1'" A C 11 ? ? N1 A C 11 ? ? 113.75 108.50 5.25 0.70 N 97 6 "C3'" A C 14 ? ? "C2'" A C 14 ? ? "C1'" A C 14 ? ? 106.35 101.50 4.85 0.80 N 98 6 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.06 108.50 4.56 0.70 N 99 6 "O4'" A G 19 ? ? "C1'" A G 19 ? ? N9 A G 19 ? ? 113.45 108.50 4.95 0.70 N 100 6 "O4'" A C 20 ? ? "C1'" A C 20 ? ? N1 A C 20 ? ? 114.22 108.50 5.72 0.70 N 101 6 N3 A G 32 ? ? C2 A G 32 ? ? N2 A G 32 ? ? 115.30 119.90 -4.60 0.70 N 102 6 "O4'" A C 33 ? ? "C1'" A C 33 ? ? N1 A C 33 ? ? 114.46 108.50 5.96 0.70 N 103 7 N3 A G 1 ? ? C2 A G 1 ? ? N2 A G 1 ? ? 114.93 119.90 -4.97 0.70 N 104 7 "C1'" A G 2 ? ? "O4'" A G 2 ? ? "C4'" A G 2 ? ? 105.21 109.70 -4.49 0.70 N 105 7 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 114.21 108.50 5.71 0.70 N 106 7 "O4'" A C 4 ? ? "C1'" A C 4 ? ? N1 A C 4 ? ? 113.61 108.50 5.11 0.70 N 107 7 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 112.80 108.50 4.30 0.70 N 108 7 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 113.73 108.50 5.23 0.70 N 109 7 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.70 108.50 5.20 0.70 N 110 7 N1 A C 14 ? ? C2 A C 14 ? ? O2 A C 14 ? ? 122.52 118.90 3.62 0.60 N 111 7 N1 A C 16 ? ? C2 A C 16 ? ? O2 A C 16 ? ? 122.58 118.90 3.68 0.60 N 112 7 "O4'" A A 18 ? ? "C1'" A A 18 ? ? N9 A A 18 ? ? 113.12 108.50 4.62 0.70 N 113 7 "O4'" A C 20 ? ? "C1'" A C 20 ? ? N1 A C 20 ? ? 112.70 108.50 4.20 0.70 N 114 7 "O4'" A C 24 ? ? "C1'" A C 24 ? ? N1 A C 24 ? ? 113.36 108.50 4.86 0.70 N 115 7 NE B ARG 215 ? ? CZ B ARG 215 ? ? NH2 B ARG 215 ? ? 117.28 120.30 -3.02 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG B 202 ? ? 46.15 76.71 2 1 SER B 204 ? ? -122.75 -121.49 3 1 PRO B 206 ? ? -77.73 33.55 4 1 ALA B 216 ? ? -67.15 14.23 5 3 ARG B 202 ? ? -157.82 79.45 6 3 SER B 204 ? ? -72.50 36.95 7 4 ARG B 202 ? ? 30.83 88.26 8 4 SER B 204 ? ? 24.85 60.65 9 5 ARG B 202 ? ? 24.72 63.88 10 5 ALA B 209 ? ? 59.04 12.23 11 5 ALA B 218 ? ? -147.47 50.14 12 6 ARG B 202 ? ? -156.01 74.88 13 6 SER B 204 ? ? -121.13 -95.93 14 6 ARG B 205 ? ? 51.35 70.06 15 6 SER B 207 ? ? -55.35 170.30 16 7 ARG B 202 ? ? -174.08 104.31 17 7 SER B 204 ? ? 34.64 53.41 18 7 ALA B 218 ? ? -161.68 81.78 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 5 _pdbx_validate_peptide_omega.auth_comp_id_1 PRO _pdbx_validate_peptide_omega.auth_asym_id_1 B _pdbx_validate_peptide_omega.auth_seq_id_1 206 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 SER _pdbx_validate_peptide_omega.auth_asym_id_2 B _pdbx_validate_peptide_omega.auth_seq_id_2 207 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -121.88 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 1 ? ? 0.066 'SIDE CHAIN' 2 1 G A 2 ? ? 0.064 'SIDE CHAIN' 3 1 U A 5 ? ? 0.107 'SIDE CHAIN' 4 1 G A 6 ? ? 0.107 'SIDE CHAIN' 5 1 G A 10 ? ? 0.100 'SIDE CHAIN' 6 1 A A 12 ? ? 0.056 'SIDE CHAIN' 7 1 C A 14 ? ? 0.078 'SIDE CHAIN' 8 1 G A 15 ? ? 0.090 'SIDE CHAIN' 9 1 C A 16 ? ? 0.072 'SIDE CHAIN' 10 1 G A 19 ? ? 0.227 'SIDE CHAIN' 11 1 C A 24 ? ? 0.133 'SIDE CHAIN' 12 1 C A 33 ? ? 0.088 'SIDE CHAIN' 13 1 ARG B 201 ? ? 0.097 'SIDE CHAIN' 14 1 ARG B 212 ? ? 0.093 'SIDE CHAIN' 15 2 G A 2 ? ? 0.053 'SIDE CHAIN' 16 2 G A 6 ? ? 0.083 'SIDE CHAIN' 17 2 G A 7 ? ? 0.066 'SIDE CHAIN' 18 2 G A 8 ? ? 0.075 'SIDE CHAIN' 19 2 G A 10 ? ? 0.054 'SIDE CHAIN' 20 2 C A 14 ? ? 0.071 'SIDE CHAIN' 21 2 G A 15 ? ? 0.094 'SIDE CHAIN' 22 2 C A 16 ? ? 0.076 'SIDE CHAIN' 23 2 G A 19 ? ? 0.172 'SIDE CHAIN' 24 2 G A 22 ? ? 0.075 'SIDE CHAIN' 25 2 A A 23 ? ? 0.073 'SIDE CHAIN' 26 2 G A 26 ? ? 0.101 'SIDE CHAIN' 27 2 A A 30 ? ? 0.072 'SIDE CHAIN' 28 2 C A 33 ? ? 0.101 'SIDE CHAIN' 29 2 ARG B 212 ? ? 0.090 'SIDE CHAIN' 30 3 G A 1 ? ? 0.088 'SIDE CHAIN' 31 3 G A 2 ? ? 0.055 'SIDE CHAIN' 32 3 U A 3 ? ? 0.122 'SIDE CHAIN' 33 3 U A 5 ? ? 0.085 'SIDE CHAIN' 34 3 G A 8 ? ? 0.071 'SIDE CHAIN' 35 3 C A 9 ? ? 0.061 'SIDE CHAIN' 36 3 C A 11 ? ? 0.077 'SIDE CHAIN' 37 3 A A 12 ? ? 0.144 'SIDE CHAIN' 38 3 G A 13 ? ? 0.079 'SIDE CHAIN' 39 3 C A 14 ? ? 0.061 'SIDE CHAIN' 40 3 G A 15 ? ? 0.104 'SIDE CHAIN' 41 3 C A 16 ? ? 0.083 'SIDE CHAIN' 42 3 G A 19 ? ? 0.120 'SIDE CHAIN' 43 3 C A 20 ? ? 0.074 'SIDE CHAIN' 44 3 G A 22 ? ? 0.074 'SIDE CHAIN' 45 3 C A 24 ? ? 0.114 'SIDE CHAIN' 46 3 G A 25 ? ? 0.129 'SIDE CHAIN' 47 3 A A 30 ? ? 0.052 'SIDE CHAIN' 48 3 G A 32 ? ? 0.075 'SIDE CHAIN' 49 4 G A 1 ? ? 0.081 'SIDE CHAIN' 50 4 G A 2 ? ? 0.088 'SIDE CHAIN' 51 4 U A 3 ? ? 0.096 'SIDE CHAIN' 52 4 C A 4 ? ? 0.074 'SIDE CHAIN' 53 4 G A 6 ? ? 0.079 'SIDE CHAIN' 54 4 G A 7 ? ? 0.087 'SIDE CHAIN' 55 4 C A 9 ? ? 0.074 'SIDE CHAIN' 56 4 G A 15 ? ? 0.082 'SIDE CHAIN' 57 4 C A 16 ? ? 0.105 'SIDE CHAIN' 58 4 G A 19 ? ? 0.086 'SIDE CHAIN' 59 4 C A 20 ? ? 0.090 'SIDE CHAIN' 60 4 G A 22 ? ? 0.068 'SIDE CHAIN' 61 4 G A 25 ? ? 0.060 'SIDE CHAIN' 62 4 G A 26 ? ? 0.062 'SIDE CHAIN' 63 4 G A 31 ? ? 0.051 'SIDE CHAIN' 64 5 C A 4 ? ? 0.089 'SIDE CHAIN' 65 5 U A 5 ? ? 0.119 'SIDE CHAIN' 66 5 G A 6 ? ? 0.109 'SIDE CHAIN' 67 5 G A 8 ? ? 0.100 'SIDE CHAIN' 68 5 G A 10 ? ? 0.071 'SIDE CHAIN' 69 5 C A 11 ? ? 0.111 'SIDE CHAIN' 70 5 C A 14 ? ? 0.078 'SIDE CHAIN' 71 5 G A 15 ? ? 0.099 'SIDE CHAIN' 72 5 C A 16 ? ? 0.093 'SIDE CHAIN' 73 5 G A 19 ? ? 0.143 'SIDE CHAIN' 74 5 G A 25 ? ? 0.148 'SIDE CHAIN' 75 5 G A 26 ? ? 0.068 'SIDE CHAIN' 76 5 U A 27 ? ? 0.087 'SIDE CHAIN' 77 5 ARG B 202 ? ? 0.080 'SIDE CHAIN' 78 6 G A 1 ? ? 0.116 'SIDE CHAIN' 79 6 G A 6 ? ? 0.090 'SIDE CHAIN' 80 6 G A 7 ? ? 0.071 'SIDE CHAIN' 81 6 G A 8 ? ? 0.084 'SIDE CHAIN' 82 6 C A 9 ? ? 0.098 'SIDE CHAIN' 83 6 C A 11 ? ? 0.059 'SIDE CHAIN' 84 6 C A 16 ? ? 0.126 'SIDE CHAIN' 85 6 A A 17 ? ? 0.057 'SIDE CHAIN' 86 6 G A 19 ? ? 0.105 'SIDE CHAIN' 87 6 G A 22 ? ? 0.094 'SIDE CHAIN' 88 6 A A 23 ? ? 0.081 'SIDE CHAIN' 89 6 C A 24 ? ? 0.169 'SIDE CHAIN' 90 6 G A 26 ? ? 0.101 'SIDE CHAIN' 91 6 U A 27 ? ? 0.141 'SIDE CHAIN' 92 6 C A 34 ? ? 0.106 'SIDE CHAIN' 93 6 ARG B 213 ? ? 0.079 'SIDE CHAIN' 94 7 G A 2 ? ? 0.124 'SIDE CHAIN' 95 7 U A 3 ? ? 0.122 'SIDE CHAIN' 96 7 G A 6 ? ? 0.127 'SIDE CHAIN' 97 7 G A 7 ? ? 0.079 'SIDE CHAIN' 98 7 G A 10 ? ? 0.105 'SIDE CHAIN' 99 7 C A 11 ? ? 0.078 'SIDE CHAIN' 100 7 G A 19 ? ? 0.065 'SIDE CHAIN' 101 7 C A 20 ? ? 0.061 'SIDE CHAIN' 102 7 U A 21 ? ? 0.077 'SIDE CHAIN' 103 7 A A 23 ? ? 0.065 'SIDE CHAIN' 104 7 G A 25 ? ? 0.096 'SIDE CHAIN' 105 7 G A 26 ? ? 0.140 'SIDE CHAIN' 106 7 C A 29 ? ? 0.082 'SIDE CHAIN' 107 7 A A 30 ? ? 0.065 'SIDE CHAIN' 108 7 G A 32 ? ? 0.156 'SIDE CHAIN' 109 7 C A 33 ? ? 0.076 'SIDE CHAIN' 110 7 ARG B 211 ? ? 0.092 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1I9F 'double helix' 1I9F 'a-form double helix' 1I9F tetraloop 1I9F 'bulge loop' 1I9F 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 34 1_555 -0.518 -0.092 -1.031 -30.907 -7.164 1.403 1 A_G1:C34_A A 1 ? A 34 ? 19 1 1 A G 2 1_555 A C 33 1_555 1.730 0.425 -1.220 -33.047 4.821 0.917 2 A_G2:C33_A A 2 ? A 33 ? ? 1 1 A U 3 1_555 A G 32 1_555 2.090 -0.364 -0.285 -5.608 5.606 -16.630 3 A_U3:G32_A A 3 ? A 32 ? 28 ? 1 A C 4 1_555 A G 31 1_555 -0.099 0.001 -0.432 17.893 -8.400 0.142 4 A_C4:G31_A A 4 ? A 31 ? 19 1 1 A U 5 1_555 A A 30 1_555 0.173 -0.051 -0.173 22.899 -8.956 -4.373 5 A_U5:A30_A A 5 ? A 30 ? 20 1 1 A G 6 1_555 A C 29 1_555 -0.311 -0.218 -0.693 12.286 7.951 -0.777 6 A_G6:C29_A A 6 ? A 29 ? 19 1 1 A G 7 1_555 A A 28 1_555 0.027 1.595 0.032 -4.489 -32.498 -29.284 7 A_G7:A28_A A 7 ? A 28 ? 8 ? 1 A G 8 1_555 A G 26 1_555 1.169 1.001 -0.585 -5.598 -6.532 -178.279 8 A_G8:G26_A A 8 ? A 26 ? 3 ? 1 A C 9 1_555 A G 25 1_555 0.395 -0.050 -0.251 8.758 -6.294 2.297 9 A_C9:G25_A A 9 ? A 25 ? 19 1 1 A G 10 1_555 A C 24 1_555 -0.426 -0.171 -0.511 0.903 -2.030 2.024 10 A_G10:C24_A A 10 ? A 24 ? 19 1 1 A C 11 1_555 A G 22 1_555 0.180 -0.181 -0.192 -10.921 -12.324 0.717 11 A_C11:G22_A A 11 ? A 22 ? 19 1 1 A A 12 1_555 A U 21 1_555 0.033 -0.081 -0.807 -10.544 10.751 -6.713 12 A_A12:U21_A A 12 ? A 21 ? 20 1 1 A G 13 1_555 A C 20 1_555 0.706 0.007 0.222 32.348 20.047 -8.946 13 A_G13:C20_A A 13 ? A 20 ? 19 1 1 A C 14 1_555 A G 19 1_555 0.779 0.296 0.057 10.594 22.801 15.689 14 A_C14:G19_A A 14 ? A 19 ? ? 1 1 A G 15 1_555 A A 18 1_555 6.162 -4.677 0.989 26.997 23.995 6.538 15 A_G15:A18_A A 15 ? A 18 ? 11 9 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 34 1_555 A G 2 1_555 A C 33 1_555 0.461 -1.610 3.453 7.209 11.413 34.029 -4.138 0.256 2.823 18.618 -11.760 36.535 1 AA_G1G2:C33C34_AA A 1 ? A 34 ? A 2 ? A 33 ? 1 A G 2 1_555 A C 33 1_555 A U 3 1_555 A G 32 1_555 -1.135 -0.928 2.939 -3.978 2.107 27.305 -2.407 1.493 2.992 4.425 8.355 27.667 2 AA_G2U3:G32C33_AA A 2 ? A 33 ? A 3 ? A 32 ? 1 A U 3 1_555 A G 32 1_555 A C 4 1_555 A G 31 1_555 0.594 -1.438 2.888 -0.271 10.398 15.592 -8.576 -1.934 1.606 33.850 0.881 18.725 3 AA_U3C4:G31G32_AA A 3 ? A 32 ? A 4 ? A 31 ? 1 A C 4 1_555 A G 31 1_555 A U 5 1_555 A A 30 1_555 -0.375 -1.817 3.582 -3.720 3.004 28.471 -4.363 -0.137 3.397 6.053 7.497 28.861 4 AA_C4U5:A30G31_AA A 4 ? A 31 ? A 5 ? A 30 ? 1 A U 5 1_555 A A 30 1_555 A G 6 1_555 A C 29 1_555 0.240 -1.823 3.923 -5.434 6.900 25.501 -5.892 -2.075 3.209 15.072 11.871 26.947 5 AA_U5G6:C29A30_AA A 5 ? A 30 ? A 6 ? A 29 ? 1 A G 6 1_555 A C 29 1_555 A G 7 1_555 A A 28 1_555 -1.777 -0.899 4.591 3.664 -25.246 40.845 1.856 2.620 4.273 -32.632 -4.735 47.867 6 AA_G6G7:A28C29_AA A 6 ? A 29 ? A 7 ? A 28 ? 1 A G 7 1_555 A A 28 1_555 A G 8 1_555 A G 26 1_555 -1.252 1.633 3.251 3.724 4.116 90.318 1.068 0.956 3.265 2.900 -2.624 90.452 7 AA_G7G8:G26A28_AA A 7 ? A 28 ? A 8 ? A 26 ? 1 A G 8 1_555 A G 26 1_555 A C 9 1_555 A G 25 1_555 -1.292 -0.872 3.534 -10.465 -1.931 -62.158 0.926 -1.727 3.276 1.855 -10.057 -62.972 8 AA_G8C9:G25G26_AA A 8 ? A 26 ? A 9 ? A 25 ? 1 A C 9 1_555 A G 25 1_555 A G 10 1_555 A C 24 1_555 0.797 -1.460 4.153 4.720 -2.504 23.360 -2.448 0.096 4.357 -6.083 -11.466 23.956 9 AA_C9G10:C24G25_AA A 9 ? A 25 ? A 10 ? A 24 ? 1 A G 10 1_555 A C 24 1_555 A C 11 1_555 A G 22 1_555 0.115 -0.881 4.259 5.850 21.208 38.926 -3.614 0.524 3.359 29.169 -8.046 44.503 10 AA_G10C11:G22C24_AA A 10 ? A 24 ? A 11 ? A 22 ? 1 A C 11 1_555 A G 22 1_555 A A 12 1_555 A U 21 1_555 -0.152 -1.149 3.859 3.274 3.057 32.092 -2.685 0.943 3.703 5.496 -5.886 32.395 11 AA_C11A12:U21G22_AA A 11 ? A 22 ? A 12 ? A 21 ? 1 A A 12 1_555 A U 21 1_555 A G 13 1_555 A C 20 1_555 0.078 -1.121 2.476 -7.797 -7.868 29.824 -0.895 -1.284 2.581 -14.666 14.534 31.771 12 AA_A12G13:C20U21_AA A 12 ? A 21 ? A 13 ? A 20 ? 1 A G 13 1_555 A C 20 1_555 A C 14 1_555 A G 19 1_555 0.070 -1.741 4.647 4.766 49.539 31.724 -4.932 0.232 1.170 59.217 -5.697 58.471 13 AA_G13C14:G19C20_AA A 13 ? A 20 ? A 14 ? A 19 ? 1 A C 14 1_555 A G 19 1_555 A G 15 1_555 A A 18 1_555 -1.046 -0.430 5.388 -24.746 -39.377 35.610 3.505 -1.402 4.114 -46.199 29.033 57.967 14 AA_C14G15:A18G19_AA A 14 ? A 19 ? A 15 ? A 18 ? #