HEADER TRANSFERASE 23-APR-01 1IIN TITLE THYMIDYLYLTRANSFERASE COMPLEXED WITH UDP-GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: THYMIDYLYLTRANSFERASE; COMPND 5 EC: 2.7.7.24; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA; SOURCE 3 ORGANISM_TAXID: 28901; SOURCE 4 STRAIN: LT2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.A.BARTON,J.LESNIAK,J.B.BIGGINS,P.D.JEFFREY,J.JIANG,K.R.RAJASHANKAR, AUTHOR 2 J.S.THORSON,D.B.NIKOLOV REVDAT 6 07-FEB-24 1IIN 1 REMARK SEQADV REVDAT 5 09-FEB-11 1IIN 1 REMARK REVDAT 4 24-FEB-09 1IIN 1 VERSN REVDAT 3 01-APR-03 1IIN 1 JRNL REVDAT 2 30-MAY-01 1IIN 1 JRNL REVDAT 1 09-MAY-01 1IIN 0 JRNL AUTH W.A.BARTON,J.LESNIAK,J.B.BIGGINS,P.D.JEFFREY,J.JIANG, JRNL AUTH 2 K.R.RAJASHANKAR,J.S.THORSON,D.B.NIKOLOV JRNL TITL STRUCTURE, MECHANISM AND ENGINEERING OF A JRNL TITL 2 NUCLEOTIDYLYLTRANSFERASE AS A FIRST STEP TOWARD JRNL TITL 3 GLYCORANDOMIZATION. JRNL REF NAT.STRUCT.BIOL. V. 8 545 2001 JRNL REFN ISSN 1072-8368 JRNL PMID 11373625 JRNL DOI 10.1038/88618 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 80491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8054 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8827 REMARK 3 BIN R VALUE (WORKING SET) : 0.1945 REMARK 3 BIN FREE R VALUE : 0.2503 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 985 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.006 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9028 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 144 REMARK 3 SOLVENT ATOMS : 762 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.99000 REMARK 3 B22 (A**2) : 1.28000 REMARK 3 B33 (A**2) : 0.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.08 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.09 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 55.07 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : UDP.PAR REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 3 : UDP.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THERE ARE THREE C-TERMINAL RESIDUES IN REMARK 3 THE CRYSTAL FOR WHICH THE AUTHOR DOES NOT SEE CLEAR DENSITY: LYS REMARK 3 290, GLY 291, LEU 292. THERE IS NO DENSITY BEYOND THE CB FOR LYS REMARK 3 154. REMARK 4 REMARK 4 1IIN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-01. REMARK 100 THE DEPOSITION ID IS D_1000013304. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 130 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 39.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, ISO-PROPANOL, PH 7, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 46.45000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.12950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.07050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.12950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.45000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.07050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 290 REMARK 465 GLY A 291 REMARK 465 LEU A 292 REMARK 465 LYS B 290 REMARK 465 GLY B 291 REMARK 465 LEU B 292 REMARK 465 LYS C 290 REMARK 465 GLY C 291 REMARK 465 LEU C 292 REMARK 465 LYS D 290 REMARK 465 GLY D 291 REMARK 465 LEU D 292 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 LYS B 154 CG CD CE NZ REMARK 470 LYS C 154 CG CD CE NZ REMARK 470 LYS D 154 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1513 O HOH A 1537 1.96 REMARK 500 O HOH C 1533 O HOH C 1571 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N MET B 1 O HOH A 1513 2564 1.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 217 SD MET A 217 CE 0.370 REMARK 500 MET B 36 SD MET B 36 CE -0.379 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 32 -85.46 66.99 REMARK 500 PRO A 86 70.43 -69.62 REMARK 500 TYR B 32 -87.30 66.42 REMARK 500 TYR C 32 -92.10 66.11 REMARK 500 SER C 277 1.49 -67.08 REMARK 500 TYR D 32 -95.14 66.79 REMARK 500 PRO D 86 67.76 -68.98 REMARK 500 ASP D 118 50.08 -111.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPG A 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPG B 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPG C 1503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPG D 1504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IIM RELATED DB: PDB REMARK 900 GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE COMPLEXED WITH TTP REMARK 900 RELATED ID: 1MP3 RELATED DB: PDB REMARK 900 RELATED ID: 1MP4 RELATED DB: PDB REMARK 900 RELATED ID: 1MP5 RELATED DB: PDB DBREF 1IIN A 1 292 UNP Q9F7K6 Q9F7K6_9ENTR 1 292 DBREF 1IIN B 1 292 UNP Q9F7K6 Q9F7K6_9ENTR 1 292 DBREF 1IIN C 1 292 UNP Q9F7K6 Q9F7K6_9ENTR 1 292 DBREF 1IIN D 1 292 UNP Q9F7K6 Q9F7K6_9ENTR 1 292 SEQADV 1IIN GLN A 26 UNP Q9F7K6 LYS 26 CONFLICT SEQADV 1IIN GLN B 26 UNP Q9F7K6 LYS 26 CONFLICT SEQADV 1IIN GLN C 26 UNP Q9F7K6 LYS 26 CONFLICT SEQADV 1IIN GLN D 26 UNP Q9F7K6 LYS 26 CONFLICT SEQRES 1 A 292 MET LYS THR ARG LYS GLY ILE ILE LEU ALA GLY GLY SER SEQRES 2 A 292 GLY THR ARG LEU TYR PRO VAL THR MET ALA VAL SER GLN SEQRES 3 A 292 GLN LEU LEU PRO ILE TYR ASP LYS PRO MET ILE TYR TYR SEQRES 4 A 292 PRO LEU SER THR LEU MET LEU ALA GLY ILE ARG ASP ILE SEQRES 5 A 292 LEU ILE ILE SER THR PRO GLN ASP THR PRO ARG PHE GLN SEQRES 6 A 292 GLN LEU LEU GLY ASP GLY SER GLN TRP GLY LEU ASN LEU SEQRES 7 A 292 GLN TYR LYS VAL GLN PRO SER PRO ASP GLY LEU ALA GLN SEQRES 8 A 292 ALA PHE ILE ILE GLY GLU GLU PHE ILE GLY HIS ASP ASP SEQRES 9 A 292 CYS ALA LEU VAL LEU GLY ASP ASN ILE PHE TYR GLY HIS SEQRES 10 A 292 ASP LEU PRO LYS LEU MET GLU ALA ALA VAL ASN LYS GLU SEQRES 11 A 292 SER GLY ALA THR VAL PHE ALA TYR HIS VAL ASN ASP PRO SEQRES 12 A 292 GLU ARG TYR GLY VAL VAL GLU PHE ASP GLN LYS GLY THR SEQRES 13 A 292 ALA VAL SER LEU GLU GLU LYS PRO LEU GLN PRO LYS SER SEQRES 14 A 292 ASN TYR ALA VAL THR GLY LEU TYR PHE TYR ASP ASN SER SEQRES 15 A 292 VAL VAL GLU MET ALA LYS ASN LEU LYS PRO SER ALA ARG SEQRES 16 A 292 GLY GLU LEU GLU ILE THR ASP ILE ASN ARG ILE TYR MET SEQRES 17 A 292 GLU GLN GLY ARG LEU SER VAL ALA MET MET GLY ARG GLY SEQRES 18 A 292 TYR ALA TRP LEU ASP THR GLY THR HIS GLN SER LEU ILE SEQRES 19 A 292 GLU ALA SER ASN PHE ILE ALA THR ILE GLU GLU ARG GLN SEQRES 20 A 292 GLY LEU LYS VAL SER CYS PRO GLU GLU ILE ALA PHE ARG SEQRES 21 A 292 LYS ASN PHE ILE ASN ALA GLN GLN VAL ILE GLU LEU ALA SEQRES 22 A 292 GLY PRO LEU SER LYS ASN ASP TYR GLY LYS TYR LEU LEU SEQRES 23 A 292 LYS MET VAL LYS GLY LEU SEQRES 1 B 292 MET LYS THR ARG LYS GLY ILE ILE LEU ALA GLY GLY SER SEQRES 2 B 292 GLY THR ARG LEU TYR PRO VAL THR MET ALA VAL SER GLN SEQRES 3 B 292 GLN LEU LEU PRO ILE TYR ASP LYS PRO MET ILE TYR TYR SEQRES 4 B 292 PRO LEU SER THR LEU MET LEU ALA GLY ILE ARG ASP ILE SEQRES 5 B 292 LEU ILE ILE SER THR PRO GLN ASP THR PRO ARG PHE GLN SEQRES 6 B 292 GLN LEU LEU GLY ASP GLY SER GLN TRP GLY LEU ASN LEU SEQRES 7 B 292 GLN TYR LYS VAL GLN PRO SER PRO ASP GLY LEU ALA GLN SEQRES 8 B 292 ALA PHE ILE ILE GLY GLU GLU PHE ILE GLY HIS ASP ASP SEQRES 9 B 292 CYS ALA LEU VAL LEU GLY ASP ASN ILE PHE TYR GLY HIS SEQRES 10 B 292 ASP LEU PRO LYS LEU MET GLU ALA ALA VAL ASN LYS GLU SEQRES 11 B 292 SER GLY ALA THR VAL PHE ALA TYR HIS VAL ASN ASP PRO SEQRES 12 B 292 GLU ARG TYR GLY VAL VAL GLU PHE ASP GLN LYS GLY THR SEQRES 13 B 292 ALA VAL SER LEU GLU GLU LYS PRO LEU GLN PRO LYS SER SEQRES 14 B 292 ASN TYR ALA VAL THR GLY LEU TYR PHE TYR ASP ASN SER SEQRES 15 B 292 VAL VAL GLU MET ALA LYS ASN LEU LYS PRO SER ALA ARG SEQRES 16 B 292 GLY GLU LEU GLU ILE THR ASP ILE ASN ARG ILE TYR MET SEQRES 17 B 292 GLU GLN GLY ARG LEU SER VAL ALA MET MET GLY ARG GLY SEQRES 18 B 292 TYR ALA TRP LEU ASP THR GLY THR HIS GLN SER LEU ILE SEQRES 19 B 292 GLU ALA SER ASN PHE ILE ALA THR ILE GLU GLU ARG GLN SEQRES 20 B 292 GLY LEU LYS VAL SER CYS PRO GLU GLU ILE ALA PHE ARG SEQRES 21 B 292 LYS ASN PHE ILE ASN ALA GLN GLN VAL ILE GLU LEU ALA SEQRES 22 B 292 GLY PRO LEU SER LYS ASN ASP TYR GLY LYS TYR LEU LEU SEQRES 23 B 292 LYS MET VAL LYS GLY LEU SEQRES 1 C 292 MET LYS THR ARG LYS GLY ILE ILE LEU ALA GLY GLY SER SEQRES 2 C 292 GLY THR ARG LEU TYR PRO VAL THR MET ALA VAL SER GLN SEQRES 3 C 292 GLN LEU LEU PRO ILE TYR ASP LYS PRO MET ILE TYR TYR SEQRES 4 C 292 PRO LEU SER THR LEU MET LEU ALA GLY ILE ARG ASP ILE SEQRES 5 C 292 LEU ILE ILE SER THR PRO GLN ASP THR PRO ARG PHE GLN SEQRES 6 C 292 GLN LEU LEU GLY ASP GLY SER GLN TRP GLY LEU ASN LEU SEQRES 7 C 292 GLN TYR LYS VAL GLN PRO SER PRO ASP GLY LEU ALA GLN SEQRES 8 C 292 ALA PHE ILE ILE GLY GLU GLU PHE ILE GLY HIS ASP ASP SEQRES 9 C 292 CYS ALA LEU VAL LEU GLY ASP ASN ILE PHE TYR GLY HIS SEQRES 10 C 292 ASP LEU PRO LYS LEU MET GLU ALA ALA VAL ASN LYS GLU SEQRES 11 C 292 SER GLY ALA THR VAL PHE ALA TYR HIS VAL ASN ASP PRO SEQRES 12 C 292 GLU ARG TYR GLY VAL VAL GLU PHE ASP GLN LYS GLY THR SEQRES 13 C 292 ALA VAL SER LEU GLU GLU LYS PRO LEU GLN PRO LYS SER SEQRES 14 C 292 ASN TYR ALA VAL THR GLY LEU TYR PHE TYR ASP ASN SER SEQRES 15 C 292 VAL VAL GLU MET ALA LYS ASN LEU LYS PRO SER ALA ARG SEQRES 16 C 292 GLY GLU LEU GLU ILE THR ASP ILE ASN ARG ILE TYR MET SEQRES 17 C 292 GLU GLN GLY ARG LEU SER VAL ALA MET MET GLY ARG GLY SEQRES 18 C 292 TYR ALA TRP LEU ASP THR GLY THR HIS GLN SER LEU ILE SEQRES 19 C 292 GLU ALA SER ASN PHE ILE ALA THR ILE GLU GLU ARG GLN SEQRES 20 C 292 GLY LEU LYS VAL SER CYS PRO GLU GLU ILE ALA PHE ARG SEQRES 21 C 292 LYS ASN PHE ILE ASN ALA GLN GLN VAL ILE GLU LEU ALA SEQRES 22 C 292 GLY PRO LEU SER LYS ASN ASP TYR GLY LYS TYR LEU LEU SEQRES 23 C 292 LYS MET VAL LYS GLY LEU SEQRES 1 D 292 MET LYS THR ARG LYS GLY ILE ILE LEU ALA GLY GLY SER SEQRES 2 D 292 GLY THR ARG LEU TYR PRO VAL THR MET ALA VAL SER GLN SEQRES 3 D 292 GLN LEU LEU PRO ILE TYR ASP LYS PRO MET ILE TYR TYR SEQRES 4 D 292 PRO LEU SER THR LEU MET LEU ALA GLY ILE ARG ASP ILE SEQRES 5 D 292 LEU ILE ILE SER THR PRO GLN ASP THR PRO ARG PHE GLN SEQRES 6 D 292 GLN LEU LEU GLY ASP GLY SER GLN TRP GLY LEU ASN LEU SEQRES 7 D 292 GLN TYR LYS VAL GLN PRO SER PRO ASP GLY LEU ALA GLN SEQRES 8 D 292 ALA PHE ILE ILE GLY GLU GLU PHE ILE GLY HIS ASP ASP SEQRES 9 D 292 CYS ALA LEU VAL LEU GLY ASP ASN ILE PHE TYR GLY HIS SEQRES 10 D 292 ASP LEU PRO LYS LEU MET GLU ALA ALA VAL ASN LYS GLU SEQRES 11 D 292 SER GLY ALA THR VAL PHE ALA TYR HIS VAL ASN ASP PRO SEQRES 12 D 292 GLU ARG TYR GLY VAL VAL GLU PHE ASP GLN LYS GLY THR SEQRES 13 D 292 ALA VAL SER LEU GLU GLU LYS PRO LEU GLN PRO LYS SER SEQRES 14 D 292 ASN TYR ALA VAL THR GLY LEU TYR PHE TYR ASP ASN SER SEQRES 15 D 292 VAL VAL GLU MET ALA LYS ASN LEU LYS PRO SER ALA ARG SEQRES 16 D 292 GLY GLU LEU GLU ILE THR ASP ILE ASN ARG ILE TYR MET SEQRES 17 D 292 GLU GLN GLY ARG LEU SER VAL ALA MET MET GLY ARG GLY SEQRES 18 D 292 TYR ALA TRP LEU ASP THR GLY THR HIS GLN SER LEU ILE SEQRES 19 D 292 GLU ALA SER ASN PHE ILE ALA THR ILE GLU GLU ARG GLN SEQRES 20 D 292 GLY LEU LYS VAL SER CYS PRO GLU GLU ILE ALA PHE ARG SEQRES 21 D 292 LYS ASN PHE ILE ASN ALA GLN GLN VAL ILE GLU LEU ALA SEQRES 22 D 292 GLY PRO LEU SER LYS ASN ASP TYR GLY LYS TYR LEU LEU SEQRES 23 D 292 LYS MET VAL LYS GLY LEU HET UPG A1501 36 HET UPG B1502 36 HET UPG C1503 36 HET UPG D1504 36 HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER FORMUL 5 UPG 4(C15 H24 N2 O17 P2) FORMUL 9 HOH *762(H2 O) HELIX 1 1 GLY A 14 TYR A 18 5 5 HELIX 2 2 SER A 25 LEU A 28 5 4 HELIX 3 3 ILE A 37 ALA A 47 1 11 HELIX 4 4 ASP A 60 GLY A 69 1 10 HELIX 5 5 GLY A 71 GLY A 75 5 5 HELIX 6 6 ALA A 90 GLY A 96 1 7 HELIX 7 7 GLY A 96 GLY A 101 1 6 HELIX 8 8 ASP A 118 LYS A 129 1 12 HELIX 9 9 ASP A 142 ARG A 145 5 4 HELIX 10 10 SER A 182 LEU A 190 1 9 HELIX 11 11 GLU A 199 GLN A 210 1 12 HELIX 12 12 THR A 229 GLY A 248 1 20 HELIX 13 13 CYS A 253 LYS A 261 1 9 HELIX 14 14 ASN A 265 GLY A 274 1 10 HELIX 15 15 PRO A 275 SER A 277 5 3 HELIX 16 16 ASN A 279 VAL A 289 1 11 HELIX 17 17 GLY B 14 TYR B 18 5 5 HELIX 18 18 SER B 25 LEU B 28 5 4 HELIX 19 19 ILE B 37 ALA B 47 1 11 HELIX 20 20 ASP B 60 GLY B 69 1 10 HELIX 21 21 GLY B 71 GLY B 75 5 5 HELIX 22 22 GLY B 88 ALA B 90 5 3 HELIX 23 23 GLN B 91 GLY B 96 1 6 HELIX 24 24 GLY B 96 GLY B 101 1 6 HELIX 25 25 ASP B 118 LYS B 129 1 12 HELIX 26 26 ASP B 142 ARG B 145 5 4 HELIX 27 27 SER B 182 LEU B 190 1 9 HELIX 28 28 GLU B 199 GLN B 210 1 12 HELIX 29 29 THR B 229 GLY B 248 1 20 HELIX 30 30 CYS B 253 LYS B 261 1 9 HELIX 31 31 ASN B 265 GLY B 274 1 10 HELIX 32 32 PRO B 275 SER B 277 5 3 HELIX 33 33 ASN B 279 VAL B 289 1 11 HELIX 34 34 GLY C 14 TYR C 18 5 5 HELIX 35 35 PRO C 19 ALA C 23 5 5 HELIX 36 36 SER C 25 LEU C 28 5 4 HELIX 37 37 ILE C 37 ALA C 47 1 11 HELIX 38 38 ASP C 60 GLY C 69 1 10 HELIX 39 39 GLY C 71 GLY C 75 5 5 HELIX 40 40 ALA C 90 GLY C 96 1 7 HELIX 41 41 GLY C 96 GLY C 101 1 6 HELIX 42 42 ASP C 118 LYS C 129 1 12 HELIX 43 43 ASP C 142 ARG C 145 5 4 HELIX 44 44 SER C 182 ASN C 189 1 8 HELIX 45 45 GLU C 199 GLN C 210 1 12 HELIX 46 46 THR C 229 GLY C 248 1 20 HELIX 47 47 CYS C 253 LYS C 261 1 9 HELIX 48 48 ASN C 265 GLY C 274 1 10 HELIX 49 49 PRO C 275 SER C 277 5 3 HELIX 50 50 ASN C 279 VAL C 289 1 11 HELIX 51 51 GLY D 14 TYR D 18 5 5 HELIX 52 52 PRO D 19 VAL D 24 1 6 HELIX 53 53 SER D 25 LEU D 28 5 4 HELIX 54 54 ILE D 37 ALA D 47 1 11 HELIX 55 55 ASP D 60 GLY D 69 1 10 HELIX 56 56 GLY D 71 GLY D 75 5 5 HELIX 57 57 ALA D 90 GLY D 96 1 7 HELIX 58 58 GLY D 96 GLY D 101 1 6 HELIX 59 59 ASP D 118 LYS D 129 1 12 HELIX 60 60 ASP D 142 ARG D 145 5 4 HELIX 61 61 SER D 182 ASN D 189 1 8 HELIX 62 62 GLU D 199 GLN D 210 1 12 HELIX 63 63 THR D 229 GLY D 248 1 20 HELIX 64 64 CYS D 253 LYS D 261 1 9 HELIX 65 65 ASN D 265 GLY D 274 1 10 HELIX 66 66 PRO D 275 SER D 277 5 3 HELIX 67 67 ASN D 279 VAL D 289 1 11 SHEET 1 A 7 LEU A 213 MET A 218 0 SHEET 2 A 7 ALA A 133 HIS A 139 1 O ALA A 133 N SER A 214 SHEET 3 A 7 TYR A 171 TYR A 179 -1 N ALA A 172 O TYR A 138 SHEET 4 A 7 CYS A 105 LEU A 109 -1 O CYS A 105 N TYR A 179 SHEET 5 A 7 LYS A 5 LEU A 9 1 O LYS A 5 N ALA A 106 SHEET 6 A 7 ASP A 51 SER A 56 1 O ASP A 51 N GLY A 6 SHEET 7 A 7 ASN A 77 VAL A 82 1 O ASN A 77 N ILE A 52 SHEET 1 B 5 LEU A 213 MET A 218 0 SHEET 2 B 5 ALA A 133 HIS A 139 1 O ALA A 133 N SER A 214 SHEET 3 B 5 TYR A 171 TYR A 179 -1 N ALA A 172 O TYR A 138 SHEET 4 B 5 GLY A 147 PHE A 151 -1 O GLY A 147 N VAL A 173 SHEET 5 B 5 ALA A 157 GLU A 162 -1 N VAL A 158 O GLU A 150 SHEET 1 C 2 PRO A 30 ILE A 31 0 SHEET 2 C 2 LYS A 34 PRO A 35 -1 O LYS A 34 N ILE A 31 SHEET 1 D 2 ILE A 113 GLY A 116 0 SHEET 2 D 2 TYR A 222 LEU A 225 -1 N ALA A 223 O TYR A 115 SHEET 1 E 7 LEU B 213 MET B 218 0 SHEET 2 E 7 ALA B 133 HIS B 139 1 O ALA B 133 N SER B 214 SHEET 3 E 7 TYR B 171 TYR B 179 -1 N ALA B 172 O TYR B 138 SHEET 4 E 7 CYS B 105 LEU B 109 -1 O CYS B 105 N TYR B 179 SHEET 5 E 7 LYS B 5 LEU B 9 1 O LYS B 5 N ALA B 106 SHEET 6 E 7 ASP B 51 SER B 56 1 O ASP B 51 N GLY B 6 SHEET 7 E 7 ASN B 77 VAL B 82 1 O ASN B 77 N ILE B 52 SHEET 1 F 5 LEU B 213 MET B 218 0 SHEET 2 F 5 ALA B 133 HIS B 139 1 O ALA B 133 N SER B 214 SHEET 3 F 5 TYR B 171 TYR B 179 -1 N ALA B 172 O TYR B 138 SHEET 4 F 5 GLY B 147 PHE B 151 -1 O GLY B 147 N VAL B 173 SHEET 5 F 5 ALA B 157 GLU B 162 -1 N VAL B 158 O GLU B 150 SHEET 1 G 2 PRO B 30 ILE B 31 0 SHEET 2 G 2 LYS B 34 PRO B 35 -1 O LYS B 34 N ILE B 31 SHEET 1 H 2 ILE B 113 TYR B 115 0 SHEET 2 H 2 ALA B 223 LEU B 225 -1 N ALA B 223 O TYR B 115 SHEET 1 I 7 ASN C 77 VAL C 82 0 SHEET 2 I 7 ASP C 51 SER C 56 1 N ILE C 52 O ASN C 77 SHEET 3 I 7 LYS C 5 LEU C 9 1 O GLY C 6 N LEU C 53 SHEET 4 I 7 CYS C 105 LEU C 109 1 N ALA C 106 O LYS C 5 SHEET 5 I 7 TYR C 171 TYR C 179 -1 O GLY C 175 N LEU C 109 SHEET 6 I 7 ALA C 133 HIS C 139 -1 O THR C 134 N PHE C 178 SHEET 7 I 7 LEU C 213 MET C 217 1 N SER C 214 O ALA C 133 SHEET 1 J 2 PRO C 30 ILE C 31 0 SHEET 2 J 2 LYS C 34 PRO C 35 -1 O LYS C 34 N ILE C 31 SHEET 1 K 2 ILE C 113 TYR C 115 0 SHEET 2 K 2 ALA C 223 LEU C 225 -1 N ALA C 223 O TYR C 115 SHEET 1 L 2 GLY C 147 PHE C 151 0 SHEET 2 L 2 ALA C 157 GLU C 162 -1 N VAL C 158 O GLU C 150 SHEET 1 M 7 ASN D 77 VAL D 82 0 SHEET 2 M 7 ASP D 51 SER D 56 1 N ILE D 52 O ASN D 77 SHEET 3 M 7 LYS D 5 LEU D 9 1 O GLY D 6 N LEU D 53 SHEET 4 M 7 CYS D 105 LEU D 109 1 N ALA D 106 O LYS D 5 SHEET 5 M 7 TYR D 171 TYR D 179 -1 O GLY D 175 N LEU D 109 SHEET 6 M 7 ALA D 133 HIS D 139 -1 O THR D 134 N PHE D 178 SHEET 7 M 7 LEU D 213 MET D 217 1 N SER D 214 O ALA D 133 SHEET 1 N 2 PRO D 30 ILE D 31 0 SHEET 2 N 2 LYS D 34 PRO D 35 -1 O LYS D 34 N ILE D 31 SHEET 1 O 2 ILE D 113 TYR D 115 0 SHEET 2 O 2 ALA D 223 LEU D 225 -1 N ALA D 223 O TYR D 115 SHEET 1 P 2 GLY D 147 PHE D 151 0 SHEET 2 P 2 ALA D 157 GLU D 162 -1 N VAL D 158 O GLU D 150 CISPEP 1 TYR A 18 PRO A 19 0 0.02 CISPEP 2 TYR B 18 PRO B 19 0 0.39 CISPEP 3 TYR C 18 PRO C 19 0 -0.27 CISPEP 4 TYR D 18 PRO D 19 0 -0.23 SITE 1 AC1 25 LEU A 9 GLY A 11 GLY A 12 ARG A 16 SITE 2 AC1 25 GLN A 27 GLN A 83 PRO A 86 ASP A 87 SITE 3 AC1 25 GLY A 88 LEU A 109 ASP A 111 ASN A 112 SITE 4 AC1 25 TYR A 146 GLY A 147 GLU A 162 LYS A 163 SITE 5 AC1 25 VAL A 173 ARG A 195 THR A 201 TRP A 224 SITE 6 AC1 25 HOH A1506 HOH A1518 HOH A1549 HOH A1566 SITE 7 AC1 25 HOH A1697 SITE 1 AC2 24 LEU B 9 GLY B 11 GLY B 12 ARG B 16 SITE 2 AC2 24 GLN B 27 GLN B 83 PRO B 86 ASP B 87 SITE 3 AC2 24 GLY B 88 LEU B 89 LEU B 109 ASP B 111 SITE 4 AC2 24 ASN B 112 TYR B 146 GLY B 147 GLU B 162 SITE 5 AC2 24 LYS B 163 VAL B 173 ARG B 195 THR B 201 SITE 6 AC2 24 HOH B1503 HOH B1521 HOH B1541 HOH B1583 SITE 1 AC3 25 GLY C 11 GLY C 12 ARG C 16 GLN C 27 SITE 2 AC3 25 PRO C 86 LEU C 109 ASP C 111 TYR C 146 SITE 3 AC3 25 GLY C 147 GLU C 162 LYS C 163 VAL C 173 SITE 4 AC3 25 GLY C 175 TYR C 177 ARG C 195 GLU C 197 SITE 5 AC3 25 THR C 201 HOH C1511 HOH C1533 HOH C1541 SITE 6 AC3 25 HOH C1551 HOH C1554 HOH C1600 HOH C1618 SITE 7 AC3 25 HOH C1671 SITE 1 AC4 21 LEU D 9 GLY D 11 GLY D 12 GLN D 26 SITE 2 AC4 21 GLN D 27 GLN D 83 PRO D 86 ASP D 87 SITE 3 AC4 21 GLY D 88 ASP D 111 TYR D 146 GLY D 147 SITE 4 AC4 21 GLU D 162 LYS D 163 VAL D 173 ARG D 195 SITE 5 AC4 21 THR D 201 HOH D1527 HOH D1535 HOH D1536 SITE 6 AC4 21 HOH D1546 CRYST1 92.900 112.141 132.259 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010764 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008917 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007561 0.00000