data_1IJW # _entry.id 1IJW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1IJW pdb_00001ijw 10.2210/pdb1ijw/pdb NDB PD0213 ? ? RCSB RCSB013347 ? ? WWPDB D_1000013347 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-02-22 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site 6 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1IJW _pdbx_database_status.recvd_initial_deposition_date 2001-04-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1HCR ;Native wild-type Hin recombinase DNA-binding domain bound to underivatized hixL half-site. ; unspecified PDB 1JJ6 'FORM1 I5 DERIVATIVE' unspecified PDB 1JJ8 'FORM2 I4 DERIVATIVE' unspecified PDB 1JKO 'FORM1 A10G MUTANT' unspecified PDB 1JKP 'FORM1 T11G MUTANT' unspecified PDB 1JKQ 'FORM1 G9T MUTANT' unspecified PDB 1JKR 'FORM1 T11C MUTANT' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chiu, T.K.' 1 'Sohn, C.' 2 'Johnson, R.C.' 3 'Dickerson, R.E.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Testing water-mediated DNA recognition by the Hin recombinase.' 'EMBO J.' 21 801 814 2002 EMJODG UK 0261-4189 0897 ? 11847127 10.1093/emboj/21.4.801 1 'How Hin Recombinase, FIS and Cations Bind DNA. Chapter 4. Water-Mediated Sequence-Specific Recognition by Hin Recombinase.' Thesis ? 145 241 2001 ? ? ? ? ? ? ? 2 'Hin Recombinase Bound to DNA: the Origin of Specificity in Major and Minor Groove Interactions.' Science 263 348 355 1994 SCIEAS US 0036-8075 0038 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chiu, T.K.' 1 ? primary 'Sohn, C.' 2 ? primary 'Dickerson, R.E.' 3 ? primary 'Johnson, R.C.' 4 ? 1 'Chiu, T.K.' 5 ? 2 'Feng, J.A.' 6 ? 2 'Johnson, R.C.' 7 ? 2 'Dickerson, R.E.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*AP*TP*AP*AP*GP*A)-3'" 4324.836 1 ? ? ? ? 2 polymer syn "5'-D(*AP*TP*(CBR)P*TP*TP*AP*TP*CP*AP*AP*AP*AP*AP*C)-3'" 4310.702 1 ? ? ? ? 3 polymer syn 'DNA-INVERTASE HIN' 6047.051 1 ? ? 'RESIDUES 139 TO 190' ? 4 non-polymer syn 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 122.143 2 ? ? ? ? 5 water nat water 18.015 7 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'Hin Recombinase' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DG)(DT)(DT)(DT)(DT)(DT)(DG)(DA)(DT)(DA)(DA)(DG)(DA)' TGTTTTTGATAAGA A ? 2 polydeoxyribonucleotide no yes '(DA)(DT)(CBR)(DT)(DT)(DA)(DT)(DC)(DA)(DA)(DA)(DA)(DA)(DC)' ATCTTATCAAAAAC B ? 3 'polypeptide(L)' no no GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKRMN GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKRMN C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRS 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DT n 1 4 DT n 1 5 DT n 1 6 DT n 1 7 DT n 1 8 DG n 1 9 DA n 1 10 DT n 1 11 DA n 1 12 DA n 1 13 DG n 1 14 DA n 2 1 DA n 2 2 DT n 2 3 CBR n 2 4 DT n 2 5 DT n 2 6 DA n 2 7 DT n 2 8 DC n 2 9 DA n 2 10 DA n 2 11 DA n 2 12 DA n 2 13 DA n 2 14 DC n 3 1 GLY n 3 2 ARG n 3 3 PRO n 3 4 ARG n 3 5 ALA n 3 6 ILE n 3 7 ASN n 3 8 LYS n 3 9 HIS n 3 10 GLU n 3 11 GLN n 3 12 GLU n 3 13 GLN n 3 14 ILE n 3 15 SER n 3 16 ARG n 3 17 LEU n 3 18 LEU n 3 19 GLU n 3 20 LYS n 3 21 GLY n 3 22 HIS n 3 23 PRO n 3 24 ARG n 3 25 GLN n 3 26 GLN n 3 27 LEU n 3 28 ALA n 3 29 ILE n 3 30 ILE n 3 31 PHE n 3 32 GLY n 3 33 ILE n 3 34 GLY n 3 35 VAL n 3 36 SER n 3 37 THR n 3 38 LEU n 3 39 TYR n 3 40 ARG n 3 41 TYR n 3 42 PHE n 3 43 PRO n 3 44 ALA n 3 45 SER n 3 46 SER n 3 47 ILE n 3 48 LYS n 3 49 LYS n 3 50 ARG n 3 51 MET n 3 52 ASN n # _pdbx_entity_src_syn.entity_id 3 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'SYNTHETIC PEPTIDE' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CBR 'DNA linking' n "5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 Br N3 O7 P' 386.093 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRS non-polymer . 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 'TRIS BUFFER' 'C4 H12 N O3 1' 122.143 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 2 2 DT T A . n A 1 2 DG 2 3 3 DG G A . n A 1 3 DT 3 4 4 DT T A . n A 1 4 DT 4 5 5 DT T A . n A 1 5 DT 5 6 6 DT T A . n A 1 6 DT 6 7 7 DT T A . n A 1 7 DT 7 8 8 DT T A . n A 1 8 DG 8 9 9 DG G A . n A 1 9 DA 9 10 10 DA A A . n A 1 10 DT 10 11 11 DT T A . n A 1 11 DA 11 12 12 DA A A . n A 1 12 DA 12 13 13 DA A A . n A 1 13 DG 13 14 14 DG G A . n A 1 14 DA 14 15 15 DA A A . n B 2 1 DA 1 16 16 DA A B . n B 2 2 DT 2 17 17 DT T B . n B 2 3 CBR 3 18 18 CBR C B . n B 2 4 DT 4 19 19 DT T B . n B 2 5 DT 5 20 20 DT T B . n B 2 6 DA 6 21 21 DA A B . n B 2 7 DT 7 22 22 DT T B . n B 2 8 DC 8 23 23 DC C B . n B 2 9 DA 9 24 24 DA A B . n B 2 10 DA 10 25 25 DA A B . n B 2 11 DA 11 26 26 DA A B . n B 2 12 DA 12 27 27 DA A B . n B 2 13 DA 13 28 28 DA A B . n B 2 14 DC 14 29 29 DC C B . n C 3 1 GLY 1 139 139 GLY GLY C . n C 3 2 ARG 2 140 140 ARG ARG C . n C 3 3 PRO 3 141 141 PRO PRO C . n C 3 4 ARG 4 142 142 ARG ARG C . n C 3 5 ALA 5 143 143 ALA ALA C . n C 3 6 ILE 6 144 144 ILE ILE C . n C 3 7 ASN 7 145 145 ASN ASN C . n C 3 8 LYS 8 146 146 LYS LYS C . n C 3 9 HIS 9 147 147 HIS HIS C . n C 3 10 GLU 10 148 148 GLU GLU C . n C 3 11 GLN 11 149 149 GLN GLN C . n C 3 12 GLU 12 150 150 GLU GLU C . n C 3 13 GLN 13 151 151 GLN GLN C . n C 3 14 ILE 14 152 152 ILE ILE C . n C 3 15 SER 15 153 153 SER SER C . n C 3 16 ARG 16 154 154 ARG ARG C . n C 3 17 LEU 17 155 155 LEU LEU C . n C 3 18 LEU 18 156 156 LEU LEU C . n C 3 19 GLU 19 157 157 GLU GLU C . n C 3 20 LYS 20 158 158 LYS LYS C . n C 3 21 GLY 21 159 159 GLY GLY C . n C 3 22 HIS 22 160 160 HIS HIS C . n C 3 23 PRO 23 161 161 PRO PRO C . n C 3 24 ARG 24 162 162 ARG ARG C . n C 3 25 GLN 25 163 163 GLN GLN C . n C 3 26 GLN 26 164 164 GLN GLN C . n C 3 27 LEU 27 165 165 LEU LEU C . n C 3 28 ALA 28 166 166 ALA ALA C . n C 3 29 ILE 29 167 167 ILE ILE C . n C 3 30 ILE 30 168 168 ILE ILE C . n C 3 31 PHE 31 169 169 PHE PHE C . n C 3 32 GLY 32 170 170 GLY GLY C . n C 3 33 ILE 33 171 171 ILE ILE C . n C 3 34 GLY 34 172 172 GLY GLY C . n C 3 35 VAL 35 173 173 VAL VAL C . n C 3 36 SER 36 174 174 SER SER C . n C 3 37 THR 37 175 175 THR THR C . n C 3 38 LEU 38 176 176 LEU LEU C . n C 3 39 TYR 39 177 177 TYR TYR C . n C 3 40 ARG 40 178 178 ARG ARG C . n C 3 41 TYR 41 179 179 TYR TYR C . n C 3 42 PHE 42 180 180 PHE PHE C . n C 3 43 PRO 43 181 181 PRO PRO C . n C 3 44 ALA 44 182 182 ALA ALA C . n C 3 45 SER 45 183 183 SER SER C . n C 3 46 SER 46 184 184 SER SER C . n C 3 47 ILE 47 185 185 ILE ILE C . n C 3 48 LYS 48 186 ? ? ? C . n C 3 49 LYS 49 187 ? ? ? C . n C 3 50 ARG 50 188 ? ? ? C . n C 3 51 MET 51 189 ? ? ? C . n C 3 52 ASN 52 190 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 TRS 1 204 204 TRS TRS B . E 4 TRS 1 203 203 TRS TRS C . F 5 HOH 1 201 201 HOH HOH A . F 5 HOH 2 202 202 HOH HOH A . F 5 HOH 3 208 208 HOH HOH A . F 5 HOH 4 212 212 HOH HOH A . G 5 HOH 1 205 205 HOH HOH B . G 5 HOH 2 207 207 HOH HOH B . H 5 HOH 1 206 206 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C LYS 146 ? CG ? C LYS 8 CG 2 1 Y 1 C LYS 146 ? CD ? C LYS 8 CD 3 1 Y 1 C LYS 146 ? CE ? C LYS 8 CE 4 1 Y 1 C LYS 146 ? NZ ? C LYS 8 NZ 5 1 Y 1 C HIS 147 ? CB ? C HIS 9 CB 6 1 Y 1 C HIS 147 ? CG ? C HIS 9 CG 7 1 Y 1 C HIS 147 ? ND1 ? C HIS 9 ND1 8 1 Y 1 C HIS 147 ? CD2 ? C HIS 9 CD2 9 1 Y 1 C HIS 147 ? CE1 ? C HIS 9 CE1 10 1 Y 1 C HIS 147 ? NE2 ? C HIS 9 NE2 11 1 Y 1 C GLU 150 ? CG ? C GLU 12 CG 12 1 Y 1 C GLU 150 ? CD ? C GLU 12 CD 13 1 Y 1 C GLU 150 ? OE1 ? C GLU 12 OE1 14 1 Y 1 C GLU 150 ? OE2 ? C GLU 12 OE2 15 1 Y 1 C LYS 158 ? CG ? C LYS 20 CG 16 1 Y 1 C LYS 158 ? CD ? C LYS 20 CD 17 1 Y 1 C LYS 158 ? CE ? C LYS 20 CE 18 1 Y 1 C LYS 158 ? NZ ? C LYS 20 NZ 19 1 Y 1 C GLN 164 ? CG ? C GLN 26 CG 20 1 Y 1 C GLN 164 ? CD ? C GLN 26 CD 21 1 Y 1 C GLN 164 ? OE1 ? C GLN 26 OE1 22 1 Y 1 C GLN 164 ? NE2 ? C GLN 26 NE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SOLVE phasing . ? 1 CNS refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 1IJW _cell.length_a 85.749 _cell.length_b 81.136 _cell.length_c 44.596 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IJW _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # _exptl.entry_id 1IJW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.66 _exptl_crystal.density_percent_sol 52.0 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 281 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details ;Hanging drop vapor diffusion at 4C, with initial concentration in drop of 0.13 mM DNA, 0.33 mM Hin, 46 mMTris (pH 8.5), 46 mM CaCl2, 63 mM NaCl, 11.6% v/v PEG400, and 2.03 mM Na cacodylate. Reservoir solution contains 100 mM Tris (pH 8.5), 100 mM CaCl2, 100 mM NaCl, and 25% PEG400. Concentration of PEG400 in reservoir solution was increased in 5% increments to 35%., VAPOR DIFFUSION, HANGING DROP, temperature 281K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 Tris ? ? ? 1 2 1 CaCl2 ? ? ? 1 3 1 NaCl ? ? ? 1 4 1 'PEG 400' ? ? ? 1 5 1 'sodium cacodylate' ? ? ? 1 6 2 Tris ? ? ? 1 7 2 CaCl2 ? ? ? 1 8 2 NaCl ? ? ? 1 9 2 'PEG 400' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.details ;MULTIPLE WAVELENGTH WITH ANOMALOUS SCATTERING USING THREE IODINE AND ONE BROMINE DERIVATIVES. THE IODINE DERIVATIVES REPLACE THYMINE AT POSITIONS 4, 5, AND 7+19 WITH 5-IODO URACIL. THE BROMINE DERIVATIVE REPLACES CYTOSINE AT POSITION 18 WITH 5-BROMO CYTOSINE. ; # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 1999-06-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.917 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C _diffrn_source.pdbx_wavelength 0.917 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1IJW _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.40 _reflns.number_obs 5435 _reflns.number_all ? _reflns.percent_possible_obs 85.35 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.079 _reflns.pdbx_netI_over_sigmaI 16.59 _reflns.B_iso_Wilson_estimate 47 _reflns.pdbx_redundancy 26 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.51 _reflns_shell.percent_possible_all 43.76 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.27 _reflns_shell.meanI_over_sigI_obs 2.60 _reflns_shell.pdbx_redundancy 1.91 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1IJW _refine.ls_number_reflns_obs 5435 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF 10000 _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 85.4 _refine.ls_R_factor_obs 0.223 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.223 _refine.ls_R_factor_R_free 0.278 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.4 _refine.ls_number_reflns_R_free 536 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 40 _refine.aniso_B[1][1] 14.66 _refine.aniso_B[2][2] 4.55 _refine.aniso_B[3][3] -19.21 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol 0.30 _refine.solvent_model_param_bsol 50 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'MIRAS PHASES' _refine.pdbx_method_to_determine_struct MIRAS _refine.pdbx_isotropic_thermal_model ANISOTROPIC_FIXED_ISOTROPIC _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1IJW _refine_analyze.Luzzati_coordinate_error_obs 0.39 _refine_analyze.Luzzati_sigma_a_obs 0.57 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.44 _refine_analyze.Luzzati_sigma_a_free 0.52 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 358 _refine_hist.pdbx_number_atoms_nucleic_acid 576 _refine_hist.pdbx_number_atoms_ligand 17 _refine_hist.number_atoms_solvent 7 _refine_hist.number_atoms_total 958 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.0087 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.819 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 17.88 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.846 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 5.9 1.5 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 8.2 3.0 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 9.8 3.0 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 12.6 3.5 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.40 _refine_ls_shell.d_res_low 2.51 _refine_ls_shell.number_reflns_R_work 337 _refine_ls_shell.R_factor_R_work 0.424 _refine_ls_shell.percent_reflns_obs 43.8 _refine_ls_shell.R_factor_R_free 0.421 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 5.1 _refine_ls_shell.number_reflns_R_free 39 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1IJW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1IJW _struct.title 'Testing the Water-Mediated Hin Recombinase DNA Recognition by Systematic Mutations.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1IJW _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text 'water-mediated recognition, protein-DNA complex, Hin recombinase, BR18, DNA BINDING PROTEIN-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP HIN_SALTY 3 GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKRMN 139 P03013 ? 2 PDB 1IJW 1 ? ? 1IJW ? 3 PDB 1IJW 2 ? ? 1IJW ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1IJW C 1 ? 52 ? P03013 139 ? 190 ? 139 190 2 2 1IJW A 1 ? 14 ? 1IJW 2 ? 15 ? 2 15 3 3 1IJW B 1 ? 14 ? 1IJW 16 ? 29 ? 16 29 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN C 7 ? LYS C 20 ? ASN C 145 LYS C 158 1 ? 14 HELX_P HELX_P2 2 PRO C 23 ? GLY C 32 ? PRO C 161 GLY C 170 1 ? 10 HELX_P HELX_P3 3 GLY C 34 ? PHE C 42 ? GLY C 172 PHE C 180 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DT 2 "O3'" ? ? ? 1_555 B CBR 3 P ? ? B DT 17 B CBR 18 1_555 ? ? ? ? ? ? ? 1.586 ? ? covale2 covale both ? B CBR 3 "O3'" ? ? ? 1_555 B DT 4 P ? ? B CBR 18 B DT 19 1_555 ? ? ? ? ? ? ? 1.711 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 14 N3 ? ? A DG 3 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 14 O2 ? ? A DG 3 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 14 N4 ? ? A DG 3 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 13 N1 ? ? A DT 4 B DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 13 N6 ? ? A DT 4 B DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 12 N1 ? ? A DT 5 B DA 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 12 N6 ? ? A DT 5 B DA 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 11 N1 ? ? A DT 6 B DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 11 N6 ? ? A DT 6 B DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 7 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 7 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 8 B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 8 B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 9 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 9 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 9 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 10 B DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 10 B DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 11 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 11 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 12 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 12 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 13 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 13 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 13 N1 ? ? ? 1_555 B CBR 3 N3 ? ? A DG 14 B CBR 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 13 N2 ? ? ? 1_555 B CBR 3 O2 ? ? A DG 14 B CBR 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 13 O6 ? ? ? 1_555 B CBR 3 N4 ? ? A DG 14 B CBR 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C TRS 203 ? 3 'BINDING SITE FOR RESIDUE TRS C 203' AC2 Software B TRS 204 ? 4 'BINDING SITE FOR RESIDUE TRS B 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 DG A 8 ? DG A 9 . ? 1_555 ? 2 AC1 3 DC B 8 ? DC B 23 . ? 6_554 ? 3 AC1 3 GLY C 32 ? GLY C 170 . ? 1_555 ? 4 AC2 4 DA A 9 ? DA A 10 . ? 1_555 ? 5 AC2 4 DT A 10 ? DT A 11 . ? 1_555 ? 6 AC2 4 DC B 8 ? DC B 23 . ? 1_555 ? 7 AC2 4 DA B 9 ? DA B 24 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" B CBR 18 ? ? P B DT 19 ? ? 1.711 1.607 0.104 0.012 Y 2 1 "C4'" B DT 19 ? ? "C3'" B DT 19 ? ? 1.428 1.521 -0.093 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C5'" B DA 16 ? ? "C4'" B DA 16 ? ? "C3'" B DA 16 ? A 125.90 115.70 10.20 1.20 N 2 1 "C3'" B CBR 18 ? ? "O3'" B CBR 18 ? ? P B DT 19 ? ? 141.15 119.70 21.45 1.20 Y 3 1 "O4'" B DT 19 ? ? "C4'" B DT 19 ? ? "C3'" B DT 19 ? ? 114.73 106.00 8.73 0.60 N 4 1 "C5'" B DT 19 ? ? "C4'" B DT 19 ? ? "O4'" B DT 19 ? ? 96.40 109.30 -12.90 1.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER C 183 ? ? -67.11 61.65 2 1 SER C 184 ? ? -176.91 12.53 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA B 16 ? ? 0.052 'SIDE CHAIN' 2 1 DA B 28 ? ? 0.103 'SIDE CHAIN' 3 1 DC B 29 ? ? 0.077 'SIDE CHAIN' # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id CBR _pdbx_struct_mod_residue.label_seq_id 3 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id CBR _pdbx_struct_mod_residue.auth_seq_id 18 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DC _pdbx_struct_mod_residue.details ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C LYS 186 ? C LYS 48 2 1 Y 1 C LYS 187 ? C LYS 49 3 1 Y 1 C ARG 188 ? C ARG 50 4 1 Y 1 C MET 189 ? C MET 51 5 1 Y 1 C ASN 190 ? C ASN 52 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 CBR BR BR N N 58 CBR P P N N 59 CBR OP1 O N N 60 CBR OP2 O N N 61 CBR "O5'" O N N 62 CBR N1 N N N 63 CBR C6 C N N 64 CBR C2 C N N 65 CBR O2 O N N 66 CBR N3 N N N 67 CBR C4 C N N 68 CBR N4 N N N 69 CBR C5 C N N 70 CBR "C2'" C N N 71 CBR "C5'" C N N 72 CBR "C4'" C N R 73 CBR "O4'" O N N 74 CBR "C1'" C N R 75 CBR "C3'" C N S 76 CBR "O3'" O N N 77 CBR OP3 O N N 78 CBR HOP2 H N N 79 CBR H6 H N N 80 CBR H41 H N N 81 CBR H42 H N N 82 CBR "H2'" H N N 83 CBR "H2''" H N N 84 CBR "H5'" H N N 85 CBR "H5''" H N N 86 CBR "H4'" H N N 87 CBR "H1'" H N N 88 CBR "H3'" H N N 89 CBR "HO3'" H N N 90 CBR HOP3 H N N 91 DA OP3 O N N 92 DA P P N N 93 DA OP1 O N N 94 DA OP2 O N N 95 DA "O5'" O N N 96 DA "C5'" C N N 97 DA "C4'" C N R 98 DA "O4'" O N N 99 DA "C3'" C N S 100 DA "O3'" O N N 101 DA "C2'" C N N 102 DA "C1'" C N R 103 DA N9 N Y N 104 DA C8 C Y N 105 DA N7 N Y N 106 DA C5 C Y N 107 DA C6 C Y N 108 DA N6 N N N 109 DA N1 N Y N 110 DA C2 C Y N 111 DA N3 N Y N 112 DA C4 C Y N 113 DA HOP3 H N N 114 DA HOP2 H N N 115 DA "H5'" H N N 116 DA "H5''" H N N 117 DA "H4'" H N N 118 DA "H3'" H N N 119 DA "HO3'" H N N 120 DA "H2'" H N N 121 DA "H2''" H N N 122 DA "H1'" H N N 123 DA H8 H N N 124 DA H61 H N N 125 DA H62 H N N 126 DA H2 H N N 127 DC OP3 O N N 128 DC P P N N 129 DC OP1 O N N 130 DC OP2 O N N 131 DC "O5'" O N N 132 DC "C5'" C N N 133 DC "C4'" C N R 134 DC "O4'" O N N 135 DC "C3'" C N S 136 DC "O3'" O N N 137 DC "C2'" C N N 138 DC "C1'" C N R 139 DC N1 N N N 140 DC C2 C N N 141 DC O2 O N N 142 DC N3 N N N 143 DC C4 C N N 144 DC N4 N N N 145 DC C5 C N N 146 DC C6 C N N 147 DC HOP3 H N N 148 DC HOP2 H N N 149 DC "H5'" H N N 150 DC "H5''" H N N 151 DC "H4'" H N N 152 DC "H3'" H N N 153 DC "HO3'" H N N 154 DC "H2'" H N N 155 DC "H2''" H N N 156 DC "H1'" H N N 157 DC H41 H N N 158 DC H42 H N N 159 DC H5 H N N 160 DC H6 H N N 161 DG OP3 O N N 162 DG P P N N 163 DG OP1 O N N 164 DG OP2 O N N 165 DG "O5'" O N N 166 DG "C5'" C N N 167 DG "C4'" C N R 168 DG "O4'" O N N 169 DG "C3'" C N S 170 DG "O3'" O N N 171 DG "C2'" C N N 172 DG "C1'" C N R 173 DG N9 N Y N 174 DG C8 C Y N 175 DG N7 N Y N 176 DG C5 C Y N 177 DG C6 C N N 178 DG O6 O N N 179 DG N1 N N N 180 DG C2 C N N 181 DG N2 N N N 182 DG N3 N N N 183 DG C4 C Y N 184 DG HOP3 H N N 185 DG HOP2 H N N 186 DG "H5'" H N N 187 DG "H5''" H N N 188 DG "H4'" H N N 189 DG "H3'" H N N 190 DG "HO3'" H N N 191 DG "H2'" H N N 192 DG "H2''" H N N 193 DG "H1'" H N N 194 DG H8 H N N 195 DG H1 H N N 196 DG H21 H N N 197 DG H22 H N N 198 DT OP3 O N N 199 DT P P N N 200 DT OP1 O N N 201 DT OP2 O N N 202 DT "O5'" O N N 203 DT "C5'" C N N 204 DT "C4'" C N R 205 DT "O4'" O N N 206 DT "C3'" C N S 207 DT "O3'" O N N 208 DT "C2'" C N N 209 DT "C1'" C N R 210 DT N1 N N N 211 DT C2 C N N 212 DT O2 O N N 213 DT N3 N N N 214 DT C4 C N N 215 DT O4 O N N 216 DT C5 C N N 217 DT C7 C N N 218 DT C6 C N N 219 DT HOP3 H N N 220 DT HOP2 H N N 221 DT "H5'" H N N 222 DT "H5''" H N N 223 DT "H4'" H N N 224 DT "H3'" H N N 225 DT "HO3'" H N N 226 DT "H2'" H N N 227 DT "H2''" H N N 228 DT "H1'" H N N 229 DT H3 H N N 230 DT H71 H N N 231 DT H72 H N N 232 DT H73 H N N 233 DT H6 H N N 234 GLN N N N N 235 GLN CA C N S 236 GLN C C N N 237 GLN O O N N 238 GLN CB C N N 239 GLN CG C N N 240 GLN CD C N N 241 GLN OE1 O N N 242 GLN NE2 N N N 243 GLN OXT O N N 244 GLN H H N N 245 GLN H2 H N N 246 GLN HA H N N 247 GLN HB2 H N N 248 GLN HB3 H N N 249 GLN HG2 H N N 250 GLN HG3 H N N 251 GLN HE21 H N N 252 GLN HE22 H N N 253 GLN HXT H N N 254 GLU N N N N 255 GLU CA C N S 256 GLU C C N N 257 GLU O O N N 258 GLU CB C N N 259 GLU CG C N N 260 GLU CD C N N 261 GLU OE1 O N N 262 GLU OE2 O N N 263 GLU OXT O N N 264 GLU H H N N 265 GLU H2 H N N 266 GLU HA H N N 267 GLU HB2 H N N 268 GLU HB3 H N N 269 GLU HG2 H N N 270 GLU HG3 H N N 271 GLU HE2 H N N 272 GLU HXT H N N 273 GLY N N N N 274 GLY CA C N N 275 GLY C C N N 276 GLY O O N N 277 GLY OXT O N N 278 GLY H H N N 279 GLY H2 H N N 280 GLY HA2 H N N 281 GLY HA3 H N N 282 GLY HXT H N N 283 HIS N N N N 284 HIS CA C N S 285 HIS C C N N 286 HIS O O N N 287 HIS CB C N N 288 HIS CG C Y N 289 HIS ND1 N Y N 290 HIS CD2 C Y N 291 HIS CE1 C Y N 292 HIS NE2 N Y N 293 HIS OXT O N N 294 HIS H H N N 295 HIS H2 H N N 296 HIS HA H N N 297 HIS HB2 H N N 298 HIS HB3 H N N 299 HIS HD1 H N N 300 HIS HD2 H N N 301 HIS HE1 H N N 302 HIS HE2 H N N 303 HIS HXT H N N 304 HOH O O N N 305 HOH H1 H N N 306 HOH H2 H N N 307 ILE N N N N 308 ILE CA C N S 309 ILE C C N N 310 ILE O O N N 311 ILE CB C N S 312 ILE CG1 C N N 313 ILE CG2 C N N 314 ILE CD1 C N N 315 ILE OXT O N N 316 ILE H H N N 317 ILE H2 H N N 318 ILE HA H N N 319 ILE HB H N N 320 ILE HG12 H N N 321 ILE HG13 H N N 322 ILE HG21 H N N 323 ILE HG22 H N N 324 ILE HG23 H N N 325 ILE HD11 H N N 326 ILE HD12 H N N 327 ILE HD13 H N N 328 ILE HXT H N N 329 LEU N N N N 330 LEU CA C N S 331 LEU C C N N 332 LEU O O N N 333 LEU CB C N N 334 LEU CG C N N 335 LEU CD1 C N N 336 LEU CD2 C N N 337 LEU OXT O N N 338 LEU H H N N 339 LEU H2 H N N 340 LEU HA H N N 341 LEU HB2 H N N 342 LEU HB3 H N N 343 LEU HG H N N 344 LEU HD11 H N N 345 LEU HD12 H N N 346 LEU HD13 H N N 347 LEU HD21 H N N 348 LEU HD22 H N N 349 LEU HD23 H N N 350 LEU HXT H N N 351 LYS N N N N 352 LYS CA C N S 353 LYS C C N N 354 LYS O O N N 355 LYS CB C N N 356 LYS CG C N N 357 LYS CD C N N 358 LYS CE C N N 359 LYS NZ N N N 360 LYS OXT O N N 361 LYS H H N N 362 LYS H2 H N N 363 LYS HA H N N 364 LYS HB2 H N N 365 LYS HB3 H N N 366 LYS HG2 H N N 367 LYS HG3 H N N 368 LYS HD2 H N N 369 LYS HD3 H N N 370 LYS HE2 H N N 371 LYS HE3 H N N 372 LYS HZ1 H N N 373 LYS HZ2 H N N 374 LYS HZ3 H N N 375 LYS HXT H N N 376 MET N N N N 377 MET CA C N S 378 MET C C N N 379 MET O O N N 380 MET CB C N N 381 MET CG C N N 382 MET SD S N N 383 MET CE C N N 384 MET OXT O N N 385 MET H H N N 386 MET H2 H N N 387 MET HA H N N 388 MET HB2 H N N 389 MET HB3 H N N 390 MET HG2 H N N 391 MET HG3 H N N 392 MET HE1 H N N 393 MET HE2 H N N 394 MET HE3 H N N 395 MET HXT H N N 396 PHE N N N N 397 PHE CA C N S 398 PHE C C N N 399 PHE O O N N 400 PHE CB C N N 401 PHE CG C Y N 402 PHE CD1 C Y N 403 PHE CD2 C Y N 404 PHE CE1 C Y N 405 PHE CE2 C Y N 406 PHE CZ C Y N 407 PHE OXT O N N 408 PHE H H N N 409 PHE H2 H N N 410 PHE HA H N N 411 PHE HB2 H N N 412 PHE HB3 H N N 413 PHE HD1 H N N 414 PHE HD2 H N N 415 PHE HE1 H N N 416 PHE HE2 H N N 417 PHE HZ H N N 418 PHE HXT H N N 419 PRO N N N N 420 PRO CA C N S 421 PRO C C N N 422 PRO O O N N 423 PRO CB C N N 424 PRO CG C N N 425 PRO CD C N N 426 PRO OXT O N N 427 PRO H H N N 428 PRO HA H N N 429 PRO HB2 H N N 430 PRO HB3 H N N 431 PRO HG2 H N N 432 PRO HG3 H N N 433 PRO HD2 H N N 434 PRO HD3 H N N 435 PRO HXT H N N 436 SER N N N N 437 SER CA C N S 438 SER C C N N 439 SER O O N N 440 SER CB C N N 441 SER OG O N N 442 SER OXT O N N 443 SER H H N N 444 SER H2 H N N 445 SER HA H N N 446 SER HB2 H N N 447 SER HB3 H N N 448 SER HG H N N 449 SER HXT H N N 450 THR N N N N 451 THR CA C N S 452 THR C C N N 453 THR O O N N 454 THR CB C N R 455 THR OG1 O N N 456 THR CG2 C N N 457 THR OXT O N N 458 THR H H N N 459 THR H2 H N N 460 THR HA H N N 461 THR HB H N N 462 THR HG1 H N N 463 THR HG21 H N N 464 THR HG22 H N N 465 THR HG23 H N N 466 THR HXT H N N 467 TRS C C N N 468 TRS C1 C N N 469 TRS C2 C N N 470 TRS C3 C N N 471 TRS N N N N 472 TRS O1 O N N 473 TRS O2 O N N 474 TRS O3 O N N 475 TRS H11 H N N 476 TRS H12 H N N 477 TRS H21 H N N 478 TRS H22 H N N 479 TRS H31 H N N 480 TRS H32 H N N 481 TRS HN1 H N N 482 TRS HN2 H N N 483 TRS HN3 H N N 484 TRS HO1 H N N 485 TRS HO2 H N N 486 TRS HO3 H N N 487 TYR N N N N 488 TYR CA C N S 489 TYR C C N N 490 TYR O O N N 491 TYR CB C N N 492 TYR CG C Y N 493 TYR CD1 C Y N 494 TYR CD2 C Y N 495 TYR CE1 C Y N 496 TYR CE2 C Y N 497 TYR CZ C Y N 498 TYR OH O N N 499 TYR OXT O N N 500 TYR H H N N 501 TYR H2 H N N 502 TYR HA H N N 503 TYR HB2 H N N 504 TYR HB3 H N N 505 TYR HD1 H N N 506 TYR HD2 H N N 507 TYR HE1 H N N 508 TYR HE2 H N N 509 TYR HH H N N 510 TYR HXT H N N 511 VAL N N N N 512 VAL CA C N S 513 VAL C C N N 514 VAL O O N N 515 VAL CB C N N 516 VAL CG1 C N N 517 VAL CG2 C N N 518 VAL OXT O N N 519 VAL H H N N 520 VAL H2 H N N 521 VAL HA H N N 522 VAL HB H N N 523 VAL HG11 H N N 524 VAL HG12 H N N 525 VAL HG13 H N N 526 VAL HG21 H N N 527 VAL HG22 H N N 528 VAL HG23 H N N 529 VAL HXT H N N 530 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 CBR BR C5 sing N N 55 CBR P OP1 doub N N 56 CBR P OP2 sing N N 57 CBR P "O5'" sing N N 58 CBR P OP3 sing N N 59 CBR OP2 HOP2 sing N N 60 CBR "O5'" "C5'" sing N N 61 CBR N1 C6 sing N N 62 CBR N1 C2 sing N N 63 CBR N1 "C1'" sing N N 64 CBR C6 C5 doub N N 65 CBR C6 H6 sing N N 66 CBR C2 O2 doub N N 67 CBR C2 N3 sing N N 68 CBR N3 C4 doub N N 69 CBR C4 N4 sing N N 70 CBR C4 C5 sing N N 71 CBR N4 H41 sing N N 72 CBR N4 H42 sing N N 73 CBR "C2'" "C1'" sing N N 74 CBR "C2'" "C3'" sing N N 75 CBR "C2'" "H2'" sing N N 76 CBR "C2'" "H2''" sing N N 77 CBR "C5'" "C4'" sing N N 78 CBR "C5'" "H5'" sing N N 79 CBR "C5'" "H5''" sing N N 80 CBR "C4'" "O4'" sing N N 81 CBR "C4'" "C3'" sing N N 82 CBR "C4'" "H4'" sing N N 83 CBR "O4'" "C1'" sing N N 84 CBR "C1'" "H1'" sing N N 85 CBR "C3'" "O3'" sing N N 86 CBR "C3'" "H3'" sing N N 87 CBR "O3'" "HO3'" sing N N 88 CBR OP3 HOP3 sing N N 89 DA OP3 P sing N N 90 DA OP3 HOP3 sing N N 91 DA P OP1 doub N N 92 DA P OP2 sing N N 93 DA P "O5'" sing N N 94 DA OP2 HOP2 sing N N 95 DA "O5'" "C5'" sing N N 96 DA "C5'" "C4'" sing N N 97 DA "C5'" "H5'" sing N N 98 DA "C5'" "H5''" sing N N 99 DA "C4'" "O4'" sing N N 100 DA "C4'" "C3'" sing N N 101 DA "C4'" "H4'" sing N N 102 DA "O4'" "C1'" sing N N 103 DA "C3'" "O3'" sing N N 104 DA "C3'" "C2'" sing N N 105 DA "C3'" "H3'" sing N N 106 DA "O3'" "HO3'" sing N N 107 DA "C2'" "C1'" sing N N 108 DA "C2'" "H2'" sing N N 109 DA "C2'" "H2''" sing N N 110 DA "C1'" N9 sing N N 111 DA "C1'" "H1'" sing N N 112 DA N9 C8 sing Y N 113 DA N9 C4 sing Y N 114 DA C8 N7 doub Y N 115 DA C8 H8 sing N N 116 DA N7 C5 sing Y N 117 DA C5 C6 sing Y N 118 DA C5 C4 doub Y N 119 DA C6 N6 sing N N 120 DA C6 N1 doub Y N 121 DA N6 H61 sing N N 122 DA N6 H62 sing N N 123 DA N1 C2 sing Y N 124 DA C2 N3 doub Y N 125 DA C2 H2 sing N N 126 DA N3 C4 sing Y N 127 DC OP3 P sing N N 128 DC OP3 HOP3 sing N N 129 DC P OP1 doub N N 130 DC P OP2 sing N N 131 DC P "O5'" sing N N 132 DC OP2 HOP2 sing N N 133 DC "O5'" "C5'" sing N N 134 DC "C5'" "C4'" sing N N 135 DC "C5'" "H5'" sing N N 136 DC "C5'" "H5''" sing N N 137 DC "C4'" "O4'" sing N N 138 DC "C4'" "C3'" sing N N 139 DC "C4'" "H4'" sing N N 140 DC "O4'" "C1'" sing N N 141 DC "C3'" "O3'" sing N N 142 DC "C3'" "C2'" sing N N 143 DC "C3'" "H3'" sing N N 144 DC "O3'" "HO3'" sing N N 145 DC "C2'" "C1'" sing N N 146 DC "C2'" "H2'" sing N N 147 DC "C2'" "H2''" sing N N 148 DC "C1'" N1 sing N N 149 DC "C1'" "H1'" sing N N 150 DC N1 C2 sing N N 151 DC N1 C6 sing N N 152 DC C2 O2 doub N N 153 DC C2 N3 sing N N 154 DC N3 C4 doub N N 155 DC C4 N4 sing N N 156 DC C4 C5 sing N N 157 DC N4 H41 sing N N 158 DC N4 H42 sing N N 159 DC C5 C6 doub N N 160 DC C5 H5 sing N N 161 DC C6 H6 sing N N 162 DG OP3 P sing N N 163 DG OP3 HOP3 sing N N 164 DG P OP1 doub N N 165 DG P OP2 sing N N 166 DG P "O5'" sing N N 167 DG OP2 HOP2 sing N N 168 DG "O5'" "C5'" sing N N 169 DG "C5'" "C4'" sing N N 170 DG "C5'" "H5'" sing N N 171 DG "C5'" "H5''" sing N N 172 DG "C4'" "O4'" sing N N 173 DG "C4'" "C3'" sing N N 174 DG "C4'" "H4'" sing N N 175 DG "O4'" "C1'" sing N N 176 DG "C3'" "O3'" sing N N 177 DG "C3'" "C2'" sing N N 178 DG "C3'" "H3'" sing N N 179 DG "O3'" "HO3'" sing N N 180 DG "C2'" "C1'" sing N N 181 DG "C2'" "H2'" sing N N 182 DG "C2'" "H2''" sing N N 183 DG "C1'" N9 sing N N 184 DG "C1'" "H1'" sing N N 185 DG N9 C8 sing Y N 186 DG N9 C4 sing Y N 187 DG C8 N7 doub Y N 188 DG C8 H8 sing N N 189 DG N7 C5 sing Y N 190 DG C5 C6 sing N N 191 DG C5 C4 doub Y N 192 DG C6 O6 doub N N 193 DG C6 N1 sing N N 194 DG N1 C2 sing N N 195 DG N1 H1 sing N N 196 DG C2 N2 sing N N 197 DG C2 N3 doub N N 198 DG N2 H21 sing N N 199 DG N2 H22 sing N N 200 DG N3 C4 sing N N 201 DT OP3 P sing N N 202 DT OP3 HOP3 sing N N 203 DT P OP1 doub N N 204 DT P OP2 sing N N 205 DT P "O5'" sing N N 206 DT OP2 HOP2 sing N N 207 DT "O5'" "C5'" sing N N 208 DT "C5'" "C4'" sing N N 209 DT "C5'" "H5'" sing N N 210 DT "C5'" "H5''" sing N N 211 DT "C4'" "O4'" sing N N 212 DT "C4'" "C3'" sing N N 213 DT "C4'" "H4'" sing N N 214 DT "O4'" "C1'" sing N N 215 DT "C3'" "O3'" sing N N 216 DT "C3'" "C2'" sing N N 217 DT "C3'" "H3'" sing N N 218 DT "O3'" "HO3'" sing N N 219 DT "C2'" "C1'" sing N N 220 DT "C2'" "H2'" sing N N 221 DT "C2'" "H2''" sing N N 222 DT "C1'" N1 sing N N 223 DT "C1'" "H1'" sing N N 224 DT N1 C2 sing N N 225 DT N1 C6 sing N N 226 DT C2 O2 doub N N 227 DT C2 N3 sing N N 228 DT N3 C4 sing N N 229 DT N3 H3 sing N N 230 DT C4 O4 doub N N 231 DT C4 C5 sing N N 232 DT C5 C7 sing N N 233 DT C5 C6 doub N N 234 DT C7 H71 sing N N 235 DT C7 H72 sing N N 236 DT C7 H73 sing N N 237 DT C6 H6 sing N N 238 GLN N CA sing N N 239 GLN N H sing N N 240 GLN N H2 sing N N 241 GLN CA C sing N N 242 GLN CA CB sing N N 243 GLN CA HA sing N N 244 GLN C O doub N N 245 GLN C OXT sing N N 246 GLN CB CG sing N N 247 GLN CB HB2 sing N N 248 GLN CB HB3 sing N N 249 GLN CG CD sing N N 250 GLN CG HG2 sing N N 251 GLN CG HG3 sing N N 252 GLN CD OE1 doub N N 253 GLN CD NE2 sing N N 254 GLN NE2 HE21 sing N N 255 GLN NE2 HE22 sing N N 256 GLN OXT HXT sing N N 257 GLU N CA sing N N 258 GLU N H sing N N 259 GLU N H2 sing N N 260 GLU CA C sing N N 261 GLU CA CB sing N N 262 GLU CA HA sing N N 263 GLU C O doub N N 264 GLU C OXT sing N N 265 GLU CB CG sing N N 266 GLU CB HB2 sing N N 267 GLU CB HB3 sing N N 268 GLU CG CD sing N N 269 GLU CG HG2 sing N N 270 GLU CG HG3 sing N N 271 GLU CD OE1 doub N N 272 GLU CD OE2 sing N N 273 GLU OE2 HE2 sing N N 274 GLU OXT HXT sing N N 275 GLY N CA sing N N 276 GLY N H sing N N 277 GLY N H2 sing N N 278 GLY CA C sing N N 279 GLY CA HA2 sing N N 280 GLY CA HA3 sing N N 281 GLY C O doub N N 282 GLY C OXT sing N N 283 GLY OXT HXT sing N N 284 HIS N CA sing N N 285 HIS N H sing N N 286 HIS N H2 sing N N 287 HIS CA C sing N N 288 HIS CA CB sing N N 289 HIS CA HA sing N N 290 HIS C O doub N N 291 HIS C OXT sing N N 292 HIS CB CG sing N N 293 HIS CB HB2 sing N N 294 HIS CB HB3 sing N N 295 HIS CG ND1 sing Y N 296 HIS CG CD2 doub Y N 297 HIS ND1 CE1 doub Y N 298 HIS ND1 HD1 sing N N 299 HIS CD2 NE2 sing Y N 300 HIS CD2 HD2 sing N N 301 HIS CE1 NE2 sing Y N 302 HIS CE1 HE1 sing N N 303 HIS NE2 HE2 sing N N 304 HIS OXT HXT sing N N 305 HOH O H1 sing N N 306 HOH O H2 sing N N 307 ILE N CA sing N N 308 ILE N H sing N N 309 ILE N H2 sing N N 310 ILE CA C sing N N 311 ILE CA CB sing N N 312 ILE CA HA sing N N 313 ILE C O doub N N 314 ILE C OXT sing N N 315 ILE CB CG1 sing N N 316 ILE CB CG2 sing N N 317 ILE CB HB sing N N 318 ILE CG1 CD1 sing N N 319 ILE CG1 HG12 sing N N 320 ILE CG1 HG13 sing N N 321 ILE CG2 HG21 sing N N 322 ILE CG2 HG22 sing N N 323 ILE CG2 HG23 sing N N 324 ILE CD1 HD11 sing N N 325 ILE CD1 HD12 sing N N 326 ILE CD1 HD13 sing N N 327 ILE OXT HXT sing N N 328 LEU N CA sing N N 329 LEU N H sing N N 330 LEU N H2 sing N N 331 LEU CA C sing N N 332 LEU CA CB sing N N 333 LEU CA HA sing N N 334 LEU C O doub N N 335 LEU C OXT sing N N 336 LEU CB CG sing N N 337 LEU CB HB2 sing N N 338 LEU CB HB3 sing N N 339 LEU CG CD1 sing N N 340 LEU CG CD2 sing N N 341 LEU CG HG sing N N 342 LEU CD1 HD11 sing N N 343 LEU CD1 HD12 sing N N 344 LEU CD1 HD13 sing N N 345 LEU CD2 HD21 sing N N 346 LEU CD2 HD22 sing N N 347 LEU CD2 HD23 sing N N 348 LEU OXT HXT sing N N 349 LYS N CA sing N N 350 LYS N H sing N N 351 LYS N H2 sing N N 352 LYS CA C sing N N 353 LYS CA CB sing N N 354 LYS CA HA sing N N 355 LYS C O doub N N 356 LYS C OXT sing N N 357 LYS CB CG sing N N 358 LYS CB HB2 sing N N 359 LYS CB HB3 sing N N 360 LYS CG CD sing N N 361 LYS CG HG2 sing N N 362 LYS CG HG3 sing N N 363 LYS CD CE sing N N 364 LYS CD HD2 sing N N 365 LYS CD HD3 sing N N 366 LYS CE NZ sing N N 367 LYS CE HE2 sing N N 368 LYS CE HE3 sing N N 369 LYS NZ HZ1 sing N N 370 LYS NZ HZ2 sing N N 371 LYS NZ HZ3 sing N N 372 LYS OXT HXT sing N N 373 MET N CA sing N N 374 MET N H sing N N 375 MET N H2 sing N N 376 MET CA C sing N N 377 MET CA CB sing N N 378 MET CA HA sing N N 379 MET C O doub N N 380 MET C OXT sing N N 381 MET CB CG sing N N 382 MET CB HB2 sing N N 383 MET CB HB3 sing N N 384 MET CG SD sing N N 385 MET CG HG2 sing N N 386 MET CG HG3 sing N N 387 MET SD CE sing N N 388 MET CE HE1 sing N N 389 MET CE HE2 sing N N 390 MET CE HE3 sing N N 391 MET OXT HXT sing N N 392 PHE N CA sing N N 393 PHE N H sing N N 394 PHE N H2 sing N N 395 PHE CA C sing N N 396 PHE CA CB sing N N 397 PHE CA HA sing N N 398 PHE C O doub N N 399 PHE C OXT sing N N 400 PHE CB CG sing N N 401 PHE CB HB2 sing N N 402 PHE CB HB3 sing N N 403 PHE CG CD1 doub Y N 404 PHE CG CD2 sing Y N 405 PHE CD1 CE1 sing Y N 406 PHE CD1 HD1 sing N N 407 PHE CD2 CE2 doub Y N 408 PHE CD2 HD2 sing N N 409 PHE CE1 CZ doub Y N 410 PHE CE1 HE1 sing N N 411 PHE CE2 CZ sing Y N 412 PHE CE2 HE2 sing N N 413 PHE CZ HZ sing N N 414 PHE OXT HXT sing N N 415 PRO N CA sing N N 416 PRO N CD sing N N 417 PRO N H sing N N 418 PRO CA C sing N N 419 PRO CA CB sing N N 420 PRO CA HA sing N N 421 PRO C O doub N N 422 PRO C OXT sing N N 423 PRO CB CG sing N N 424 PRO CB HB2 sing N N 425 PRO CB HB3 sing N N 426 PRO CG CD sing N N 427 PRO CG HG2 sing N N 428 PRO CG HG3 sing N N 429 PRO CD HD2 sing N N 430 PRO CD HD3 sing N N 431 PRO OXT HXT sing N N 432 SER N CA sing N N 433 SER N H sing N N 434 SER N H2 sing N N 435 SER CA C sing N N 436 SER CA CB sing N N 437 SER CA HA sing N N 438 SER C O doub N N 439 SER C OXT sing N N 440 SER CB OG sing N N 441 SER CB HB2 sing N N 442 SER CB HB3 sing N N 443 SER OG HG sing N N 444 SER OXT HXT sing N N 445 THR N CA sing N N 446 THR N H sing N N 447 THR N H2 sing N N 448 THR CA C sing N N 449 THR CA CB sing N N 450 THR CA HA sing N N 451 THR C O doub N N 452 THR C OXT sing N N 453 THR CB OG1 sing N N 454 THR CB CG2 sing N N 455 THR CB HB sing N N 456 THR OG1 HG1 sing N N 457 THR CG2 HG21 sing N N 458 THR CG2 HG22 sing N N 459 THR CG2 HG23 sing N N 460 THR OXT HXT sing N N 461 TRS C C1 sing N N 462 TRS C C2 sing N N 463 TRS C C3 sing N N 464 TRS C N sing N N 465 TRS C1 O1 sing N N 466 TRS C1 H11 sing N N 467 TRS C1 H12 sing N N 468 TRS C2 O2 sing N N 469 TRS C2 H21 sing N N 470 TRS C2 H22 sing N N 471 TRS C3 O3 sing N N 472 TRS C3 H31 sing N N 473 TRS C3 H32 sing N N 474 TRS N HN1 sing N N 475 TRS N HN2 sing N N 476 TRS N HN3 sing N N 477 TRS O1 HO1 sing N N 478 TRS O2 HO2 sing N N 479 TRS O3 HO3 sing N N 480 TYR N CA sing N N 481 TYR N H sing N N 482 TYR N H2 sing N N 483 TYR CA C sing N N 484 TYR CA CB sing N N 485 TYR CA HA sing N N 486 TYR C O doub N N 487 TYR C OXT sing N N 488 TYR CB CG sing N N 489 TYR CB HB2 sing N N 490 TYR CB HB3 sing N N 491 TYR CG CD1 doub Y N 492 TYR CG CD2 sing Y N 493 TYR CD1 CE1 sing Y N 494 TYR CD1 HD1 sing N N 495 TYR CD2 CE2 doub Y N 496 TYR CD2 HD2 sing N N 497 TYR CE1 CZ doub Y N 498 TYR CE1 HE1 sing N N 499 TYR CE2 CZ sing Y N 500 TYR CE2 HE2 sing N N 501 TYR CZ OH sing N N 502 TYR OH HH sing N N 503 TYR OXT HXT sing N N 504 VAL N CA sing N N 505 VAL N H sing N N 506 VAL N H2 sing N N 507 VAL CA C sing N N 508 VAL CA CB sing N N 509 VAL CA HA sing N N 510 VAL C O doub N N 511 VAL C OXT sing N N 512 VAL CB CG1 sing N N 513 VAL CB CG2 sing N N 514 VAL CB HB sing N N 515 VAL CG1 HG11 sing N N 516 VAL CG1 HG12 sing N N 517 VAL CG1 HG13 sing N N 518 VAL CG2 HG21 sing N N 519 VAL CG2 HG22 sing N N 520 VAL CG2 HG23 sing N N 521 VAL OXT HXT sing N N 522 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1IJW 'double helix' 1IJW 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 B DC 14 1_555 0.158 -0.191 -0.233 -6.719 3.794 -0.243 1 A_DG3:DC29_B A 3 ? B 29 ? 19 1 1 A DT 3 1_555 B DA 13 1_555 -0.029 -0.201 -0.049 1.824 -9.622 -2.472 2 A_DT4:DA28_B A 4 ? B 28 ? 20 1 1 A DT 4 1_555 B DA 12 1_555 -0.048 -0.144 -0.130 0.395 -14.787 1.920 3 A_DT5:DA27_B A 5 ? B 27 ? 20 1 1 A DT 5 1_555 B DA 11 1_555 -0.215 -0.093 -0.607 2.806 -23.257 0.012 4 A_DT6:DA26_B A 6 ? B 26 ? 20 1 1 A DT 6 1_555 B DA 10 1_555 -0.281 -0.171 -0.321 -5.594 -8.958 -3.192 5 A_DT7:DA25_B A 7 ? B 25 ? 20 1 1 A DT 7 1_555 B DA 9 1_555 -0.509 0.009 0.026 -4.659 -9.395 3.833 6 A_DT8:DA24_B A 8 ? B 24 ? 20 1 1 A DG 8 1_555 B DC 8 1_555 -0.268 -0.363 -0.192 -1.438 -1.046 0.244 7 A_DG9:DC23_B A 9 ? B 23 ? 19 1 1 A DA 9 1_555 B DT 7 1_555 0.210 -0.204 0.013 -1.636 -8.627 -0.098 8 A_DA10:DT22_B A 10 ? B 22 ? 20 1 1 A DT 10 1_555 B DA 6 1_555 -0.096 -0.178 -0.037 -1.614 -8.840 -0.864 9 A_DT11:DA21_B A 11 ? B 21 ? 20 1 1 A DA 11 1_555 B DT 5 1_555 0.373 -0.396 -0.444 4.341 -15.850 -2.849 10 A_DA12:DT20_B A 12 ? B 20 ? 20 1 1 A DA 12 1_555 B DT 4 1_555 0.288 -0.201 0.011 7.328 -9.449 3.704 11 A_DA13:DT19_B A 13 ? B 19 ? 20 1 1 A DG 13 1_555 B CBR 3 1_555 -0.066 -0.149 0.189 2.779 -10.963 3.110 12 A_DG14:CBR18_B A 14 ? B 18 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 B DC 14 1_555 A DT 3 1_555 B DA 13 1_555 -0.961 -0.340 3.159 -2.063 8.449 30.603 -2.110 1.391 3.017 15.617 3.813 31.787 1 AA_DG3DT4:DA28DC29_BB A 3 ? B 29 ? A 4 ? B 28 ? 1 A DT 3 1_555 B DA 13 1_555 A DT 4 1_555 B DA 12 1_555 -0.141 -0.422 3.257 0.455 1.415 32.081 -1.015 0.335 3.234 2.559 -0.823 32.115 2 AA_DT4DT5:DA27DA28_BB A 4 ? B 28 ? A 5 ? B 27 ? 1 A DT 4 1_555 B DA 12 1_555 A DT 5 1_555 B DA 11 1_555 -0.083 0.301 3.088 5.766 5.974 32.255 -0.423 1.060 3.034 10.537 -10.170 33.279 3 AA_DT5DT6:DA26DA27_BB A 5 ? B 27 ? A 6 ? B 26 ? 1 A DT 5 1_555 B DA 11 1_555 A DT 6 1_555 B DA 10 1_555 0.984 0.919 3.439 0.398 -1.510 42.185 1.439 -1.323 3.414 -2.097 -0.553 42.212 4 AA_DT6DT7:DA25DA26_BB A 6 ? B 26 ? A 7 ? B 25 ? 1 A DT 6 1_555 B DA 10 1_555 A DT 7 1_555 B DA 9 1_555 -0.253 -0.347 3.261 -3.589 0.009 32.756 -0.614 -0.165 3.269 0.016 6.340 32.947 5 AA_DT7DT8:DA24DA25_BB A 7 ? B 25 ? A 8 ? B 24 ? 1 A DT 7 1_555 B DA 9 1_555 A DG 8 1_555 B DC 8 1_555 0.581 1.090 3.311 2.881 5.429 37.605 0.952 -0.510 3.463 8.354 -4.432 38.086 6 AA_DT8DG9:DC23DA24_BB A 8 ? B 24 ? A 9 ? B 23 ? 1 A DG 8 1_555 B DC 8 1_555 A DA 9 1_555 B DT 7 1_555 -1.015 0.759 3.404 -5.056 4.242 38.435 0.587 0.866 3.564 6.387 7.612 38.977 7 AA_DG9DA10:DT22DC23_BB A 9 ? B 23 ? A 10 ? B 22 ? 1 A DA 9 1_555 B DT 7 1_555 A DT 10 1_555 B DA 6 1_555 0.457 -0.599 3.332 -0.081 -2.535 31.147 -0.619 -0.865 3.368 -4.712 0.150 31.247 8 AA_DA10DT11:DA21DT22_BB A 10 ? B 22 ? A 11 ? B 21 ? 1 A DT 10 1_555 B DA 6 1_555 A DA 11 1_555 B DT 5 1_555 -0.305 1.146 3.359 2.353 6.043 37.437 0.950 0.784 3.470 9.329 -3.632 37.975 9 AA_DT11DA12:DT20DA21_BB A 11 ? B 21 ? A 12 ? B 20 ? 1 A DA 11 1_555 B DT 5 1_555 A DA 12 1_555 B DT 4 1_555 0.473 0.302 3.094 -2.751 2.253 34.374 0.180 -1.197 3.061 3.799 4.640 34.552 10 AA_DA12DA13:DT19DT20_BB A 12 ? B 20 ? A 13 ? B 19 ? 1 A DA 12 1_555 B DT 4 1_555 A DG 13 1_555 B CBR 3 1_555 0.089 -0.451 3.367 -2.642 6.078 31.881 -1.884 -0.628 3.211 10.918 4.745 32.545 11 AA_DA13DG14:CBR18DT19_BB A 13 ? B 19 ? A 14 ? B 18 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'MIRAS PHASES' # _atom_sites.entry_id 1IJW _atom_sites.fract_transf_matrix[1][1] 0.011662 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012325 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022424 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P # loop_