data_1IKO # _entry.id 1IKO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1IKO RCSB RCSB013368 WWPDB D_1000013368 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1IKO _pdbx_database_status.recvd_initial_deposition_date 2001-05-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Toth, J.' 1 'Cutforth, T.' 2 'Gelinas, A.D.' 3 'Bethoney, K.A.' 4 'Bard, J.' 5 'Harrison, C.J.' 6 # _citation.id primary _citation.title 'Crystal structure of an ephrin ectodomain.' _citation.journal_abbrev Dev.Cell _citation.journal_volume 1 _citation.page_first 83 _citation.page_last 92 _citation.year 2001 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1534-5807 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11703926 _citation.pdbx_database_id_DOI '10.1016/S1534-5807(01)00002-8' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Toth, J.' 1 ? primary 'Cutforth, T.' 2 ? primary 'Gelinas, A.D.' 3 ? primary 'Bethoney, K.A.' 4 ? primary 'Bard, J.' 5 ? primary 'Harrison, C.J.' 6 ? # _cell.entry_id 1IKO _cell.length_a 59.283 _cell.length_b 59.283 _cell.length_c 168.868 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IKO _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man EPHRIN-B2 19898.439 1 ? ? 'ECTODOMAIN, RESIDUES 30-207' ? 2 branched man 'alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 1 ? ? ? ? 3 water nat water 18.015 201 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'EPH-RELATED RECEPTOR TYROSINE KINASE LIGAND 5, LERK-5, HTK LIGAND, HTK-L, ELF-2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQ DVKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASSAGSARNHGPTRRPELE AGTNGRSSTTSPFVKPNP ; _entity_poly.pdbx_seq_one_letter_code_can ;SIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQ DVKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASSAGSARNHGPTRRPELE AGTNGRSSTTSPFVKPNP ; _entity_poly.pdbx_strand_id P _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ILE n 1 3 VAL n 1 4 LEU n 1 5 GLU n 1 6 PRO n 1 7 ILE n 1 8 TYR n 1 9 TRP n 1 10 ASN n 1 11 SER n 1 12 SER n 1 13 ASN n 1 14 SER n 1 15 LYS n 1 16 PHE n 1 17 LEU n 1 18 PRO n 1 19 GLY n 1 20 GLN n 1 21 GLY n 1 22 LEU n 1 23 VAL n 1 24 LEU n 1 25 TYR n 1 26 PRO n 1 27 GLN n 1 28 ILE n 1 29 GLY n 1 30 ASP n 1 31 LYS n 1 32 LEU n 1 33 ASP n 1 34 ILE n 1 35 ILE n 1 36 CYS n 1 37 PRO n 1 38 LYS n 1 39 VAL n 1 40 ASP n 1 41 SER n 1 42 LYS n 1 43 THR n 1 44 VAL n 1 45 GLY n 1 46 GLN n 1 47 TYR n 1 48 GLU n 1 49 TYR n 1 50 TYR n 1 51 LYS n 1 52 VAL n 1 53 TYR n 1 54 MET n 1 55 VAL n 1 56 ASP n 1 57 LYS n 1 58 ASP n 1 59 GLN n 1 60 ALA n 1 61 ASP n 1 62 ARG n 1 63 CYS n 1 64 THR n 1 65 ILE n 1 66 LYS n 1 67 LYS n 1 68 GLU n 1 69 ASN n 1 70 THR n 1 71 PRO n 1 72 LEU n 1 73 LEU n 1 74 ASN n 1 75 CYS n 1 76 ALA n 1 77 ARG n 1 78 PRO n 1 79 ASP n 1 80 GLN n 1 81 ASP n 1 82 VAL n 1 83 LYS n 1 84 PHE n 1 85 THR n 1 86 ILE n 1 87 LYS n 1 88 PHE n 1 89 GLN n 1 90 GLU n 1 91 PHE n 1 92 SER n 1 93 PRO n 1 94 ASN n 1 95 LEU n 1 96 TRP n 1 97 GLY n 1 98 LEU n 1 99 GLU n 1 100 PHE n 1 101 GLN n 1 102 LYS n 1 103 ASN n 1 104 LYS n 1 105 ASP n 1 106 TYR n 1 107 TYR n 1 108 ILE n 1 109 ILE n 1 110 SER n 1 111 THR n 1 112 SER n 1 113 ASN n 1 114 GLY n 1 115 SER n 1 116 LEU n 1 117 GLU n 1 118 GLY n 1 119 LEU n 1 120 ASP n 1 121 ASN n 1 122 GLN n 1 123 GLU n 1 124 GLY n 1 125 GLY n 1 126 VAL n 1 127 CYS n 1 128 GLN n 1 129 THR n 1 130 ARG n 1 131 ALA n 1 132 MET n 1 133 LYS n 1 134 ILE n 1 135 LEU n 1 136 MET n 1 137 LYS n 1 138 VAL n 1 139 GLY n 1 140 GLN n 1 141 ASP n 1 142 ALA n 1 143 SER n 1 144 SER n 1 145 ALA n 1 146 GLY n 1 147 SER n 1 148 ALA n 1 149 ARG n 1 150 ASN n 1 151 HIS n 1 152 GLY n 1 153 PRO n 1 154 THR n 1 155 ARG n 1 156 ARG n 1 157 PRO n 1 158 GLU n 1 159 LEU n 1 160 GLU n 1 161 ALA n 1 162 GLY n 1 163 THR n 1 164 ASN n 1 165 GLY n 1 166 ARG n 1 167 SER n 1 168 SER n 1 169 THR n 1 170 THR n 1 171 SER n 1 172 PRO n 1 173 PHE n 1 174 VAL n 1 175 LYS n 1 176 PRO n 1 177 ASN n 1 178 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene ephrin-B2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus Pichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector plasmid _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PIC-Zalpha _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code EFB2_MOUSE _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAMARSRRDSVWKYCWGLLMVLCRTAISRSIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYK VYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRA MKILMKVGQDASSAGSARNHGPTRRPELEAGTNGRSSTTSPFVKPNPGSSTDGNSAGHSGNNLLGSEVALFAGIASGCII FIVIIITLVVLLLKYRRRHRKHSPQHTTTLSLSTLATPKRGGNNNGSEPSDVIIPLRTADSVFCPHYEKVSGDYGHPVYI VQEMPPQSPANIYYKV ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession P52800 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1IKO _struct_ref_seq.pdbx_strand_id P _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 178 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P52800 _struct_ref_seq.db_align_beg 30 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 207 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 30 _struct_ref_seq.pdbx_auth_seq_align_end 207 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose ? 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1IKO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.16 _exptl_crystal.density_percent_sol 43 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details 'magnesium chloride, PEG 4000, trishydroxyethylmethane, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type SBC-2 _diffrn_detector.pdbx_collection_date 2000-02-02 _diffrn_detector.details 'double mirrors' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Two Rosenbaum-Rock monochromators double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.033 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.033 # _reflns.entry_id 1IKO _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 19.41 _reflns.d_resolution_high 1.92 _reflns.number_obs 13862 _reflns.number_all 13862 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.042 _reflns.pdbx_netI_over_sigmaI 48.0 _reflns.B_iso_Wilson_estimate 20.0 _reflns.pdbx_redundancy 22 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.92 _reflns_shell.d_res_low 1.99 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.219 _reflns_shell.meanI_over_sigI_obs 18.0 _reflns_shell.pdbx_redundancy 10 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1IKO _refine.ls_number_reflns_obs 13862 _refine.ls_number_reflns_all 14067 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 2 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF 10000 _refine.ls_d_res_low 19.41 _refine.ls_d_res_high 1.92 _refine.ls_percent_reflns_obs 97.7 _refine.ls_R_factor_obs 0.216 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.216 _refine.ls_R_factor_R_free 0.249 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 1410 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 37.4 _refine.aniso_B[1][1] 3.32 _refine.aniso_B[2][2] 3.32 _refine.aniso_B[3][3] -6.64 _refine.aniso_B[1][2] 2.93 _refine.aniso_B[1][3] .00 _refine.aniso_B[2][3] .00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_isotropic_thermal_model restrained _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD FUNCTION' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1IKO _refine_analyze.Luzzati_coordinate_error_obs 0.25 _refine_analyze.Luzzati_sigma_a_obs 0.20 _refine_analyze.Luzzati_d_res_low_obs 6.0 _refine_analyze.Luzzati_coordinate_error_free 0.30 _refine_analyze.Luzzati_sigma_a_free 0.24 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1120 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 39 _refine_hist.number_atoms_solvent 201 _refine_hist.number_atoms_total 1360 _refine_hist.d_res_high 1.92 _refine_hist.d_res_low 19.41 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.62 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 26 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.06 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 28 _refine_ls_shell.d_res_high 1.92 _refine_ls_shell.d_res_low 1.99 _refine_ls_shell.number_reflns_R_work 399 _refine_ls_shell.R_factor_R_work 0.2487 _refine_ls_shell.percent_reflns_obs 90.64 _refine_ls_shell.R_factor_R_free 0.2925 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 7.69 _refine_ls_shell.number_reflns_R_free 37 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1IKO _struct.title 'CRYSTAL STRUCTURE OF THE MURINE EPHRIN-B2 ECTODOMAIN' _struct.pdbx_descriptor EPHRIN-B2 _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1IKO _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'GREEK KEY, GLYCOSYLATION, SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 56 ? CYS A 63 ? ASP P 85 CYS P 92 1 ? 8 HELX_P HELX_P2 2 SER A 115 ? LEU A 119 ? SER P 144 LEU P 148 5 ? 5 HELX_P HELX_P3 3 GLY A 124 ? ARG A 130 ? GLY P 153 ARG P 159 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 36 SG ? ? ? 1_555 A CYS 75 SG ? ? P CYS 65 P CYS 104 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf2 disulf ? ? A CYS 63 SG ? ? ? 1_555 A CYS 127 SG ? ? P CYS 92 P CYS 156 1_555 ? ? ? ? ? ? ? 2.065 ? ? covale1 covale one ? A ASN 10 ND2 ? ? ? 1_555 B NAG . C1 ? ? P ASN 39 A NAG 1 1_555 ? ? ? ? ? ? ? 1.450 ? N-Glycosylation covale2 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? A NAG 1 A NAG 2 1_555 ? ? ? ? ? ? ? 1.383 ? ? covale3 covale both ? B NAG . O4 ? ? ? 1_555 B MAN . C1 ? ? A NAG 2 A MAN 3 1_555 ? ? ? ? ? ? ? 1.376 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 7 ? TYR A 8 ? ILE P 36 TYR P 37 A 2 LYS A 31 ? ILE A 35 ? LYS P 60 ILE P 64 A 3 LYS A 83 ? LYS A 87 ? LYS P 112 LYS P 116 B 1 LEU A 22 ? LEU A 24 ? LEU P 51 LEU P 53 B 2 LYS A 133 ? VAL A 138 ? LYS P 162 VAL P 167 B 3 LYS A 104 ? ILE A 109 ? LYS P 133 ILE P 138 B 4 TYR A 50 ? VAL A 55 ? TYR P 79 VAL P 84 B 5 LEU A 73 ? CYS A 75 ? LEU P 102 CYS P 104 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 7 ? N ILE P 36 O ASP A 33 ? O ASP P 62 A 2 3 O ILE A 34 ? O ILE P 63 N PHE A 84 ? N PHE P 113 B 1 2 N LEU A 22 ? N LEU P 51 O LYS A 133 ? O LYS P 162 B 2 3 N VAL A 138 ? N VAL P 167 O LYS A 104 ? O LYS P 133 B 3 4 O ILE A 109 ? O ILE P 138 N TYR A 53 ? N TYR P 82 B 4 5 N VAL A 52 ? N VAL P 81 O LEU A 73 ? O LEU P 102 # _database_PDB_matrix.entry_id 1IKO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1IKO _atom_sites.fract_transf_matrix[1][1] 0.016868 _atom_sites.fract_transf_matrix[1][2] 0.009739 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019478 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005922 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 30 30 SER SER P . n A 1 2 ILE 2 31 31 ILE ILE P . n A 1 3 VAL 3 32 32 VAL VAL P . n A 1 4 LEU 4 33 33 LEU LEU P . n A 1 5 GLU 5 34 34 GLU GLU P . n A 1 6 PRO 6 35 35 PRO PRO P . n A 1 7 ILE 7 36 36 ILE ILE P . n A 1 8 TYR 8 37 37 TYR TYR P . n A 1 9 TRP 9 38 38 TRP TRP P . n A 1 10 ASN 10 39 39 ASN ASN P . n A 1 11 SER 11 40 40 SER SER P . n A 1 12 SER 12 41 41 SER SER P . n A 1 13 ASN 13 42 42 ASN ASN P . n A 1 14 SER 14 43 43 SER SER P . n A 1 15 LYS 15 44 44 LYS LYS P . n A 1 16 PHE 16 45 45 PHE PHE P . n A 1 17 LEU 17 46 46 LEU LEU P . n A 1 18 PRO 18 47 47 PRO PRO P . n A 1 19 GLY 19 48 48 GLY GLY P . n A 1 20 GLN 20 49 49 GLN GLN P . n A 1 21 GLY 21 50 50 GLY GLY P . n A 1 22 LEU 22 51 51 LEU LEU P . n A 1 23 VAL 23 52 52 VAL VAL P . n A 1 24 LEU 24 53 53 LEU LEU P . n A 1 25 TYR 25 54 54 TYR TYR P . n A 1 26 PRO 26 55 55 PRO PRO P . n A 1 27 GLN 27 56 56 GLN GLN P . n A 1 28 ILE 28 57 57 ILE ILE P . n A 1 29 GLY 29 58 58 GLY GLY P . n A 1 30 ASP 30 59 59 ASP ASP P . n A 1 31 LYS 31 60 60 LYS LYS P . n A 1 32 LEU 32 61 61 LEU LEU P . n A 1 33 ASP 33 62 62 ASP ASP P . n A 1 34 ILE 34 63 63 ILE ILE P . n A 1 35 ILE 35 64 64 ILE ILE P . n A 1 36 CYS 36 65 65 CYS CYS P . n A 1 37 PRO 37 66 66 PRO PRO P . n A 1 38 LYS 38 67 67 LYS LYS P . n A 1 39 VAL 39 68 68 VAL VAL P . n A 1 40 ASP 40 69 69 ASP ASP P . n A 1 41 SER 41 70 70 SER SER P . n A 1 42 LYS 42 71 71 LYS LYS P . n A 1 43 THR 43 72 72 THR THR P . n A 1 44 VAL 44 73 73 VAL VAL P . n A 1 45 GLY 45 74 74 GLY GLY P . n A 1 46 GLN 46 75 75 GLN GLN P . n A 1 47 TYR 47 76 76 TYR TYR P . n A 1 48 GLU 48 77 77 GLU GLU P . n A 1 49 TYR 49 78 78 TYR TYR P . n A 1 50 TYR 50 79 79 TYR TYR P . n A 1 51 LYS 51 80 80 LYS LYS P . n A 1 52 VAL 52 81 81 VAL VAL P . n A 1 53 TYR 53 82 82 TYR TYR P . n A 1 54 MET 54 83 83 MET MET P . n A 1 55 VAL 55 84 84 VAL VAL P . n A 1 56 ASP 56 85 85 ASP ASP P . n A 1 57 LYS 57 86 86 LYS LYS P . n A 1 58 ASP 58 87 87 ASP ASP P . n A 1 59 GLN 59 88 88 GLN GLN P . n A 1 60 ALA 60 89 89 ALA ALA P . n A 1 61 ASP 61 90 90 ASP ASP P . n A 1 62 ARG 62 91 91 ARG ARG P . n A 1 63 CYS 63 92 92 CYS CYS P . n A 1 64 THR 64 93 93 THR THR P . n A 1 65 ILE 65 94 94 ILE ILE P . n A 1 66 LYS 66 95 95 LYS LYS P . n A 1 67 LYS 67 96 96 LYS LYS P . n A 1 68 GLU 68 97 97 GLU GLU P . n A 1 69 ASN 69 98 98 ASN ASN P . n A 1 70 THR 70 99 99 THR THR P . n A 1 71 PRO 71 100 100 PRO PRO P . n A 1 72 LEU 72 101 101 LEU LEU P . n A 1 73 LEU 73 102 102 LEU LEU P . n A 1 74 ASN 74 103 103 ASN ASN P . n A 1 75 CYS 75 104 104 CYS CYS P . n A 1 76 ALA 76 105 105 ALA ALA P . n A 1 77 ARG 77 106 106 ARG ARG P . n A 1 78 PRO 78 107 107 PRO PRO P . n A 1 79 ASP 79 108 108 ASP ASP P . n A 1 80 GLN 80 109 109 GLN GLN P . n A 1 81 ASP 81 110 110 ASP ASP P . n A 1 82 VAL 82 111 111 VAL VAL P . n A 1 83 LYS 83 112 112 LYS LYS P . n A 1 84 PHE 84 113 113 PHE PHE P . n A 1 85 THR 85 114 114 THR THR P . n A 1 86 ILE 86 115 115 ILE ILE P . n A 1 87 LYS 87 116 116 LYS LYS P . n A 1 88 PHE 88 117 117 PHE PHE P . n A 1 89 GLN 89 118 118 GLN GLN P . n A 1 90 GLU 90 119 119 GLU GLU P . n A 1 91 PHE 91 120 120 PHE PHE P . n A 1 92 SER 92 121 121 SER SER P . n A 1 93 PRO 93 122 122 PRO PRO P . n A 1 94 ASN 94 123 123 ASN ASN P . n A 1 95 LEU 95 124 124 LEU LEU P . n A 1 96 TRP 96 125 125 TRP TRP P . n A 1 97 GLY 97 126 126 GLY GLY P . n A 1 98 LEU 98 127 127 LEU LEU P . n A 1 99 GLU 99 128 128 GLU GLU P . n A 1 100 PHE 100 129 129 PHE PHE P . n A 1 101 GLN 101 130 130 GLN GLN P . n A 1 102 LYS 102 131 131 LYS LYS P . n A 1 103 ASN 103 132 132 ASN ASN P . n A 1 104 LYS 104 133 133 LYS LYS P . n A 1 105 ASP 105 134 134 ASP ASP P . n A 1 106 TYR 106 135 135 TYR TYR P . n A 1 107 TYR 107 136 136 TYR TYR P . n A 1 108 ILE 108 137 137 ILE ILE P . n A 1 109 ILE 109 138 138 ILE ILE P . n A 1 110 SER 110 139 139 SER SER P . n A 1 111 THR 111 140 140 THR THR P . n A 1 112 SER 112 141 141 SER SER P . n A 1 113 ASN 113 142 142 ASN ASN P . n A 1 114 GLY 114 143 143 GLY GLY P . n A 1 115 SER 115 144 144 SER SER P . n A 1 116 LEU 116 145 145 LEU LEU P . n A 1 117 GLU 117 146 146 GLU GLU P . n A 1 118 GLY 118 147 147 GLY GLY P . n A 1 119 LEU 119 148 148 LEU LEU P . n A 1 120 ASP 120 149 149 ASP ASP P . n A 1 121 ASN 121 150 150 ASN ASN P . n A 1 122 GLN 122 151 151 GLN GLN P . n A 1 123 GLU 123 152 152 GLU GLU P . n A 1 124 GLY 124 153 153 GLY GLY P . n A 1 125 GLY 125 154 154 GLY GLY P . n A 1 126 VAL 126 155 155 VAL VAL P . n A 1 127 CYS 127 156 156 CYS CYS P . n A 1 128 GLN 128 157 157 GLN GLN P . n A 1 129 THR 129 158 158 THR THR P . n A 1 130 ARG 130 159 159 ARG ARG P . n A 1 131 ALA 131 160 160 ALA ALA P . n A 1 132 MET 132 161 161 MET MET P . n A 1 133 LYS 133 162 162 LYS LYS P . n A 1 134 ILE 134 163 163 ILE ILE P . n A 1 135 LEU 135 164 164 LEU LEU P . n A 1 136 MET 136 165 165 MET MET P . n A 1 137 LYS 137 166 166 LYS LYS P . n A 1 138 VAL 138 167 167 VAL VAL P . n A 1 139 GLY 139 168 168 GLY GLY P . n A 1 140 GLN 140 169 169 GLN GLN P . n A 1 141 ASP 141 170 170 ASP ASP P . n A 1 142 ALA 142 171 ? ? ? P . n A 1 143 SER 143 172 ? ? ? P . n A 1 144 SER 144 173 ? ? ? P . n A 1 145 ALA 145 174 ? ? ? P . n A 1 146 GLY 146 175 ? ? ? P . n A 1 147 SER 147 176 ? ? ? P . n A 1 148 ALA 148 177 ? ? ? P . n A 1 149 ARG 149 178 ? ? ? P . n A 1 150 ASN 150 179 ? ? ? P . n A 1 151 HIS 151 180 ? ? ? P . n A 1 152 GLY 152 181 ? ? ? P . n A 1 153 PRO 153 182 ? ? ? P . n A 1 154 THR 154 183 ? ? ? P . n A 1 155 ARG 155 184 ? ? ? P . n A 1 156 ARG 156 185 ? ? ? P . n A 1 157 PRO 157 186 ? ? ? P . n A 1 158 GLU 158 187 ? ? ? P . n A 1 159 LEU 159 188 ? ? ? P . n A 1 160 GLU 160 189 ? ? ? P . n A 1 161 ALA 161 190 ? ? ? P . n A 1 162 GLY 162 191 ? ? ? P . n A 1 163 THR 163 192 ? ? ? P . n A 1 164 ASN 164 193 ? ? ? P . n A 1 165 GLY 165 194 ? ? ? P . n A 1 166 ARG 166 195 ? ? ? P . n A 1 167 SER 167 196 ? ? ? P . n A 1 168 SER 168 197 ? ? ? P . n A 1 169 THR 169 198 ? ? ? P . n A 1 170 THR 170 199 ? ? ? P . n A 1 171 SER 171 200 ? ? ? P . n A 1 172 PRO 172 201 ? ? ? P . n A 1 173 PHE 173 202 ? ? ? P . n A 1 174 VAL 174 203 ? ? ? P . n A 1 175 LYS 175 204 ? ? ? P . n A 1 176 PRO 176 205 ? ? ? P . n A 1 177 ASN 177 206 ? ? ? P . n A 1 178 PRO 178 207 ? ? ? P . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 208 1 HOH WAT P . C 3 HOH 2 209 2 HOH WAT P . C 3 HOH 3 210 3 HOH WAT P . C 3 HOH 4 211 4 HOH WAT P . C 3 HOH 5 212 5 HOH WAT P . C 3 HOH 6 213 6 HOH WAT P . C 3 HOH 7 214 7 HOH WAT P . C 3 HOH 8 215 8 HOH WAT P . C 3 HOH 9 216 9 HOH WAT P . C 3 HOH 10 217 10 HOH WAT P . C 3 HOH 11 218 11 HOH WAT P . C 3 HOH 12 219 12 HOH WAT P . C 3 HOH 13 220 13 HOH WAT P . C 3 HOH 14 221 14 HOH WAT P . C 3 HOH 15 222 15 HOH WAT P . C 3 HOH 16 223 16 HOH WAT P . C 3 HOH 17 224 17 HOH WAT P . C 3 HOH 18 225 18 HOH WAT P . C 3 HOH 19 226 19 HOH WAT P . C 3 HOH 20 227 20 HOH WAT P . C 3 HOH 21 228 21 HOH WAT P . C 3 HOH 22 229 22 HOH WAT P . C 3 HOH 23 230 23 HOH WAT P . C 3 HOH 24 231 24 HOH WAT P . C 3 HOH 25 232 25 HOH WAT P . C 3 HOH 26 233 26 HOH WAT P . C 3 HOH 27 234 27 HOH WAT P . C 3 HOH 28 235 28 HOH WAT P . C 3 HOH 29 236 29 HOH WAT P . C 3 HOH 30 237 30 HOH WAT P . C 3 HOH 31 238 31 HOH WAT P . C 3 HOH 32 239 32 HOH WAT P . C 3 HOH 33 240 33 HOH WAT P . C 3 HOH 34 241 34 HOH WAT P . C 3 HOH 35 242 35 HOH WAT P . C 3 HOH 36 243 36 HOH WAT P . C 3 HOH 37 244 37 HOH WAT P . C 3 HOH 38 245 38 HOH WAT P . C 3 HOH 39 246 39 HOH WAT P . C 3 HOH 40 247 40 HOH WAT P . C 3 HOH 41 248 41 HOH WAT P . C 3 HOH 42 249 42 HOH WAT P . C 3 HOH 43 250 43 HOH WAT P . C 3 HOH 44 251 44 HOH WAT P . C 3 HOH 45 252 45 HOH WAT P . C 3 HOH 46 253 46 HOH WAT P . C 3 HOH 47 254 47 HOH WAT P . C 3 HOH 48 255 48 HOH WAT P . C 3 HOH 49 256 49 HOH WAT P . C 3 HOH 50 257 50 HOH WAT P . C 3 HOH 51 258 51 HOH WAT P . C 3 HOH 52 259 52 HOH WAT P . C 3 HOH 53 260 53 HOH WAT P . C 3 HOH 54 261 54 HOH WAT P . C 3 HOH 55 262 55 HOH WAT P . C 3 HOH 56 263 56 HOH WAT P . C 3 HOH 57 264 57 HOH WAT P . C 3 HOH 58 265 58 HOH WAT P . C 3 HOH 59 266 59 HOH WAT P . C 3 HOH 60 267 60 HOH WAT P . C 3 HOH 61 268 61 HOH WAT P . C 3 HOH 62 269 62 HOH WAT P . C 3 HOH 63 270 63 HOH WAT P . C 3 HOH 64 271 64 HOH WAT P . C 3 HOH 65 272 65 HOH WAT P . C 3 HOH 66 273 66 HOH WAT P . C 3 HOH 67 274 67 HOH WAT P . C 3 HOH 68 275 68 HOH WAT P . C 3 HOH 69 276 69 HOH WAT P . C 3 HOH 70 277 70 HOH WAT P . C 3 HOH 71 278 71 HOH WAT P . C 3 HOH 72 279 72 HOH WAT P . C 3 HOH 73 280 73 HOH WAT P . C 3 HOH 74 281 74 HOH WAT P . C 3 HOH 75 282 75 HOH WAT P . C 3 HOH 76 283 76 HOH WAT P . C 3 HOH 77 284 77 HOH WAT P . C 3 HOH 78 285 78 HOH WAT P . C 3 HOH 79 286 79 HOH WAT P . C 3 HOH 80 287 80 HOH WAT P . C 3 HOH 81 288 81 HOH WAT P . C 3 HOH 82 289 82 HOH WAT P . C 3 HOH 83 290 83 HOH WAT P . C 3 HOH 84 291 84 HOH WAT P . C 3 HOH 85 292 85 HOH WAT P . C 3 HOH 86 293 86 HOH WAT P . C 3 HOH 87 294 87 HOH WAT P . C 3 HOH 88 295 88 HOH WAT P . C 3 HOH 89 296 89 HOH WAT P . C 3 HOH 90 297 90 HOH WAT P . C 3 HOH 91 298 91 HOH WAT P . C 3 HOH 92 299 92 HOH WAT P . C 3 HOH 93 300 93 HOH WAT P . C 3 HOH 94 301 94 HOH WAT P . C 3 HOH 95 302 95 HOH WAT P . C 3 HOH 96 303 96 HOH WAT P . C 3 HOH 97 304 97 HOH WAT P . C 3 HOH 98 305 98 HOH WAT P . C 3 HOH 99 306 99 HOH WAT P . C 3 HOH 100 307 100 HOH WAT P . C 3 HOH 101 308 101 HOH WAT P . C 3 HOH 102 309 102 HOH WAT P . C 3 HOH 103 310 103 HOH WAT P . C 3 HOH 104 311 104 HOH WAT P . C 3 HOH 105 312 105 HOH WAT P . C 3 HOH 106 313 106 HOH WAT P . C 3 HOH 107 314 107 HOH WAT P . C 3 HOH 108 315 108 HOH WAT P . C 3 HOH 109 316 109 HOH WAT P . C 3 HOH 110 317 110 HOH WAT P . C 3 HOH 111 318 111 HOH WAT P . C 3 HOH 112 319 112 HOH WAT P . C 3 HOH 113 320 113 HOH WAT P . C 3 HOH 114 321 115 HOH WAT P . C 3 HOH 115 322 116 HOH WAT P . C 3 HOH 116 323 117 HOH WAT P . C 3 HOH 117 324 118 HOH WAT P . C 3 HOH 118 325 119 HOH WAT P . C 3 HOH 119 326 120 HOH WAT P . C 3 HOH 120 327 121 HOH WAT P . C 3 HOH 121 328 122 HOH WAT P . C 3 HOH 122 329 123 HOH WAT P . C 3 HOH 123 330 124 HOH WAT P . C 3 HOH 124 331 125 HOH WAT P . C 3 HOH 125 332 126 HOH WAT P . C 3 HOH 126 333 127 HOH WAT P . C 3 HOH 127 334 128 HOH WAT P . C 3 HOH 128 335 129 HOH WAT P . C 3 HOH 129 336 130 HOH WAT P . C 3 HOH 130 337 131 HOH WAT P . C 3 HOH 131 338 132 HOH WAT P . C 3 HOH 132 339 133 HOH WAT P . C 3 HOH 133 340 134 HOH WAT P . C 3 HOH 134 341 135 HOH WAT P . C 3 HOH 135 342 136 HOH WAT P . C 3 HOH 136 343 137 HOH WAT P . C 3 HOH 137 344 138 HOH WAT P . C 3 HOH 138 345 139 HOH WAT P . C 3 HOH 139 346 140 HOH WAT P . C 3 HOH 140 347 141 HOH WAT P . C 3 HOH 141 348 142 HOH WAT P . C 3 HOH 142 349 143 HOH WAT P . C 3 HOH 143 350 144 HOH WAT P . C 3 HOH 144 351 145 HOH WAT P . C 3 HOH 145 352 146 HOH WAT P . C 3 HOH 146 353 147 HOH WAT P . C 3 HOH 147 354 148 HOH WAT P . C 3 HOH 148 355 149 HOH WAT P . C 3 HOH 149 356 150 HOH WAT P . C 3 HOH 150 357 151 HOH WAT P . C 3 HOH 151 358 152 HOH WAT P . C 3 HOH 152 359 153 HOH WAT P . C 3 HOH 153 360 154 HOH WAT P . C 3 HOH 154 361 155 HOH WAT P . C 3 HOH 155 362 156 HOH WAT P . C 3 HOH 156 363 157 HOH WAT P . C 3 HOH 157 364 158 HOH WAT P . C 3 HOH 158 365 159 HOH WAT P . C 3 HOH 159 366 160 HOH WAT P . C 3 HOH 160 367 161 HOH WAT P . C 3 HOH 161 368 162 HOH WAT P . C 3 HOH 162 369 163 HOH WAT P . C 3 HOH 163 370 164 HOH WAT P . C 3 HOH 164 371 165 HOH WAT P . C 3 HOH 165 372 166 HOH WAT P . C 3 HOH 166 373 167 HOH WAT P . C 3 HOH 167 374 168 HOH WAT P . C 3 HOH 168 375 169 HOH WAT P . C 3 HOH 169 376 170 HOH WAT P . C 3 HOH 170 377 171 HOH WAT P . C 3 HOH 171 378 172 HOH WAT P . C 3 HOH 172 379 173 HOH WAT P . C 3 HOH 173 380 174 HOH WAT P . C 3 HOH 174 381 175 HOH WAT P . C 3 HOH 175 382 176 HOH WAT P . C 3 HOH 176 383 177 HOH WAT P . C 3 HOH 177 384 178 HOH WAT P . C 3 HOH 178 385 179 HOH WAT P . C 3 HOH 179 386 180 HOH WAT P . C 3 HOH 180 387 181 HOH WAT P . C 3 HOH 181 388 182 HOH WAT P . C 3 HOH 182 389 183 HOH WAT P . C 3 HOH 183 390 184 HOH WAT P . C 3 HOH 184 391 185 HOH WAT P . C 3 HOH 185 392 186 HOH WAT P . C 3 HOH 186 393 187 HOH WAT P . C 3 HOH 187 394 188 HOH WAT P . C 3 HOH 188 395 189 HOH WAT P . C 3 HOH 189 396 190 HOH WAT P . C 3 HOH 190 397 191 HOH WAT P . C 3 HOH 191 398 192 HOH WAT P . C 3 HOH 192 399 193 HOH WAT P . C 3 HOH 193 400 194 HOH WAT P . C 3 HOH 194 401 195 HOH WAT P . C 3 HOH 195 402 196 HOH WAT P . C 3 HOH 196 403 197 HOH WAT P . C 3 HOH 197 404 198 HOH WAT P . C 3 HOH 198 405 199 HOH WAT P . C 3 HOH 199 406 200 HOH WAT P . C 3 HOH 200 407 201 HOH WAT P . C 3 HOH 201 408 202 HOH WAT P . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 10 _pdbx_struct_mod_residue.auth_asym_id P _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 39 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 P HOH 293 ? C HOH . 2 1 P HOH 299 ? C HOH . 3 1 P HOH 326 ? C HOH . 4 1 P HOH 395 ? C HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-05-03 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_branch_scheme 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_entity_branch 7 4 'Structure model' pdbx_entity_branch_descriptor 8 4 'Structure model' pdbx_entity_branch_link 9 4 'Structure model' pdbx_entity_branch_list 10 4 'Structure model' pdbx_entity_nonpoly 11 4 'Structure model' pdbx_nonpoly_scheme 12 4 'Structure model' pdbx_struct_assembly_gen 13 4 'Structure model' pdbx_struct_special_symmetry 14 4 'Structure model' pdbx_validate_close_contact 15 4 'Structure model' struct_asym 16 4 'Structure model' struct_conn 17 4 'Structure model' struct_site 18 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.auth_asym_id' 2 4 'Structure model' '_atom_site.label_asym_id' 3 4 'Structure model' '_atom_site.label_entity_id' 4 4 'Structure model' '_chem_comp.name' 5 4 'Structure model' '_chem_comp.type' 6 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 7 4 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 8 4 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_1' 9 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 4 'Structure model' '_struct_conn.pdbx_role' 11 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 13 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 HKL-2000 'data reduction' . ? 2 SHARP phasing . ? 3 CNS refinement . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE SOME AMBIGUITY IN THE EXACT C-TERMINUS SEQUENCE EXISTS DUE TO A GLU-C DIGEST. ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O P HOH 387 ? ? O P HOH 403 ? ? 1.88 2 1 OG P SER 30 ? ? O P HOH 381 ? ? 2.11 3 1 O P HOH 313 ? ? O P HOH 408 ? ? 2.12 4 1 O P HOH 377 ? ? O P HOH 378 ? ? 2.17 5 1 O P HOH 345 ? ? O P HOH 347 ? ? 2.19 6 1 O4 A MAN 3 ? ? O P HOH 386 ? ? 2.19 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id P _pdbx_validate_torsion.auth_seq_id 69 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -125.41 _pdbx_validate_torsion.psi -113.02 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 P LYS 95 ? CD ? A LYS 66 CD 2 1 Y 1 P LYS 95 ? CE ? A LYS 66 CE 3 1 Y 1 P LYS 95 ? NZ ? A LYS 66 NZ 4 1 Y 1 P LYS 96 ? CB ? A LYS 67 CB 5 1 Y 1 P LYS 96 ? CG ? A LYS 67 CG 6 1 Y 1 P LYS 96 ? CD ? A LYS 67 CD 7 1 Y 1 P LYS 96 ? CE ? A LYS 67 CE 8 1 Y 1 P LYS 96 ? NZ ? A LYS 67 NZ 9 1 Y 1 P LYS 133 ? CE ? A LYS 104 CE 10 1 Y 1 P LYS 133 ? NZ ? A LYS 104 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 P ALA 171 ? A ALA 142 2 1 Y 1 P SER 172 ? A SER 143 3 1 Y 1 P SER 173 ? A SER 144 4 1 Y 1 P ALA 174 ? A ALA 145 5 1 Y 1 P GLY 175 ? A GLY 146 6 1 Y 1 P SER 176 ? A SER 147 7 1 Y 1 P ALA 177 ? A ALA 148 8 1 Y 1 P ARG 178 ? A ARG 149 9 1 Y 1 P ASN 179 ? A ASN 150 10 1 Y 1 P HIS 180 ? A HIS 151 11 1 Y 1 P GLY 181 ? A GLY 152 12 1 Y 1 P PRO 182 ? A PRO 153 13 1 Y 1 P THR 183 ? A THR 154 14 1 Y 1 P ARG 184 ? A ARG 155 15 1 Y 1 P ARG 185 ? A ARG 156 16 1 Y 1 P PRO 186 ? A PRO 157 17 1 Y 1 P GLU 187 ? A GLU 158 18 1 Y 1 P LEU 188 ? A LEU 159 19 1 Y 1 P GLU 189 ? A GLU 160 20 1 Y 1 P ALA 190 ? A ALA 161 21 1 Y 1 P GLY 191 ? A GLY 162 22 1 Y 1 P THR 192 ? A THR 163 23 1 Y 1 P ASN 193 ? A ASN 164 24 1 Y 1 P GLY 194 ? A GLY 165 25 1 Y 1 P ARG 195 ? A ARG 166 26 1 Y 1 P SER 196 ? A SER 167 27 1 Y 1 P SER 197 ? A SER 168 28 1 Y 1 P THR 198 ? A THR 169 29 1 Y 1 P THR 199 ? A THR 170 30 1 Y 1 P SER 200 ? A SER 171 31 1 Y 1 P PRO 201 ? A PRO 172 32 1 Y 1 P PHE 202 ? A PHE 173 33 1 Y 1 P VAL 203 ? A VAL 174 34 1 Y 1 P LYS 204 ? A LYS 175 35 1 Y 1 P PRO 205 ? A PRO 176 36 1 Y 1 P ASN 206 ? A ASN 177 37 1 Y 1 P PRO 207 ? A PRO 178 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 A NAG 1 A NAG 1 n B 2 NAG 2 A NAG 2 A NAG 2 n B 2 MAN 3 A MAN 3 A MAN 3 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DManpa1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1a_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][a-D-Manp]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 MAN C1 O1 2 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 MAN 3 n # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #