data_1J6T # _entry.id 1J6T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.362 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1J6T pdb_00001j6t 10.2210/pdb1j6t/pdb RCSB RCSB001659 ? ? WWPDB D_1000001659 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1J6T _pdbx_database_status.recvd_initial_deposition_date 2002-08-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Clore, G.M.' 1 'Cornilescu, G.' 2 # _citation.id primary _citation.title ;Solution Structure of the Phosphoryl Transfer Complex between the Cytoplasmic A Domain of the Mannitol Transporter IImannitol and HPr of the Escherichia coli Phosphotransferase System ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 277 _citation.page_first 42289 _citation.page_last 42298 _citation.year 2002 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12202490 _citation.pdbx_database_id_DOI 10.1074/jbc.M207314200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cornilescu, G.' 1 ? primary 'Lee, B.R.' 2 ? primary 'Cornilescu, C.C.' 3 ? primary 'Wang, G.' 4 ? primary 'Peterkosfky, A.' 5 ? primary 'Clore, G.M.' 6 ? # _cell.entry_id 1J6T _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1J6T _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PTS SYSTEM, MANNITOL-SPECIFIC IIABC COMPONENT' 16348.547 1 ? ? 'EIIA DOMAIN' ? 2 polymer man 'Phosphocarrier protein HPr' 9129.332 1 ? ? ? ? 3 non-polymer syn 'PHOSPHITE ION' 78.972 1 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'IIAMTL, EIIA-MTL, PHOSPHOTRANSFERASE ENZYME II, A DOMAIN COMPONENT' 2 'HPR, Histidine-containing protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MANLFKLGAENIFLGRKAATKEEAIRFAGEQLVKGGYVEPEYVQAMLDREKLTPTYLGESIAVPHGTVEAKDRVLKTGVV FCQYPEGVRFGEEEDDIARLVIGIAARNNEHIQVITSLTNALDDESVIERLAHTTSVDEVLELLAGRK ; ;MANLFKLGAENIFLGRKAATKEEAIRFAGEQLVKGGYVEPEYVQAMLDREKLTPTYLGESIAVPHGTVEAKDRVLKTGVV FCQYPEGVRFGEEEDDIARLVIGIAARNNEHIQVITSLTNALDDESVIERLAHTTSVDEVLELLAGRK ; A ? 2 'polypeptide(L)' no no ;MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKL MAELE ; ;MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKL MAELE ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 ASN n 1 4 LEU n 1 5 PHE n 1 6 LYS n 1 7 LEU n 1 8 GLY n 1 9 ALA n 1 10 GLU n 1 11 ASN n 1 12 ILE n 1 13 PHE n 1 14 LEU n 1 15 GLY n 1 16 ARG n 1 17 LYS n 1 18 ALA n 1 19 ALA n 1 20 THR n 1 21 LYS n 1 22 GLU n 1 23 GLU n 1 24 ALA n 1 25 ILE n 1 26 ARG n 1 27 PHE n 1 28 ALA n 1 29 GLY n 1 30 GLU n 1 31 GLN n 1 32 LEU n 1 33 VAL n 1 34 LYS n 1 35 GLY n 1 36 GLY n 1 37 TYR n 1 38 VAL n 1 39 GLU n 1 40 PRO n 1 41 GLU n 1 42 TYR n 1 43 VAL n 1 44 GLN n 1 45 ALA n 1 46 MET n 1 47 LEU n 1 48 ASP n 1 49 ARG n 1 50 GLU n 1 51 LYS n 1 52 LEU n 1 53 THR n 1 54 PRO n 1 55 THR n 1 56 TYR n 1 57 LEU n 1 58 GLY n 1 59 GLU n 1 60 SER n 1 61 ILE n 1 62 ALA n 1 63 VAL n 1 64 PRO n 1 65 HIS n 1 66 GLY n 1 67 THR n 1 68 VAL n 1 69 GLU n 1 70 ALA n 1 71 LYS n 1 72 ASP n 1 73 ARG n 1 74 VAL n 1 75 LEU n 1 76 LYS n 1 77 THR n 1 78 GLY n 1 79 VAL n 1 80 VAL n 1 81 PHE n 1 82 CYS n 1 83 GLN n 1 84 TYR n 1 85 PRO n 1 86 GLU n 1 87 GLY n 1 88 VAL n 1 89 ARG n 1 90 PHE n 1 91 GLY n 1 92 GLU n 1 93 GLU n 1 94 GLU n 1 95 ASP n 1 96 ASP n 1 97 ILE n 1 98 ALA n 1 99 ARG n 1 100 LEU n 1 101 VAL n 1 102 ILE n 1 103 GLY n 1 104 ILE n 1 105 ALA n 1 106 ALA n 1 107 ARG n 1 108 ASN n 1 109 ASN n 1 110 GLU n 1 111 HIS n 1 112 ILE n 1 113 GLN n 1 114 VAL n 1 115 ILE n 1 116 THR n 1 117 SER n 1 118 LEU n 1 119 THR n 1 120 ASN n 1 121 ALA n 1 122 LEU n 1 123 ASP n 1 124 ASP n 1 125 GLU n 1 126 SER n 1 127 VAL n 1 128 ILE n 1 129 GLU n 1 130 ARG n 1 131 LEU n 1 132 ALA n 1 133 HIS n 1 134 THR n 1 135 THR n 1 136 SER n 1 137 VAL n 1 138 ASP n 1 139 GLU n 1 140 VAL n 1 141 LEU n 1 142 GLU n 1 143 LEU n 1 144 LEU n 1 145 ALA n 1 146 GLY n 1 147 ARG n 1 148 LYS n 2 1 MET n 2 2 PHE n 2 3 GLN n 2 4 GLN n 2 5 GLU n 2 6 VAL n 2 7 THR n 2 8 ILE n 2 9 THR n 2 10 ALA n 2 11 PRO n 2 12 ASN n 2 13 GLY n 2 14 LEU n 2 15 HIS n 2 16 THR n 2 17 ARG n 2 18 PRO n 2 19 ALA n 2 20 ALA n 2 21 GLN n 2 22 PHE n 2 23 VAL n 2 24 LYS n 2 25 GLU n 2 26 ALA n 2 27 LYS n 2 28 GLY n 2 29 PHE n 2 30 THR n 2 31 SER n 2 32 GLU n 2 33 ILE n 2 34 THR n 2 35 VAL n 2 36 THR n 2 37 SER n 2 38 ASN n 2 39 GLY n 2 40 LYS n 2 41 SER n 2 42 ALA n 2 43 SER n 2 44 ALA n 2 45 LYS n 2 46 SER n 2 47 LEU n 2 48 PHE n 2 49 LYS n 2 50 LEU n 2 51 GLN n 2 52 THR n 2 53 LEU n 2 54 GLY n 2 55 LEU n 2 56 THR n 2 57 GLN n 2 58 GLY n 2 59 THR n 2 60 VAL n 2 61 VAL n 2 62 THR n 2 63 ILE n 2 64 SER n 2 65 ALA n 2 66 GLU n 2 67 GLY n 2 68 GLU n 2 69 ASP n 2 70 GLU n 2 71 GLN n 2 72 LYS n 2 73 ALA n 2 74 VAL n 2 75 GLU n 2 76 HIS n 2 77 LEU n 2 78 VAL n 2 79 LYS n 2 80 LEU n 2 81 MET n 2 82 ALA n 2 83 GLU n 2 84 LEU n 2 85 GLU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? Escherichia ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? ? Escherichia ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP PTM3C_ECOLI 1 ;ANLFKLGAENIFLGRKAATKEEAIRFAGEQLVKGGYVEPEYVQAMLDREKLTPTYLGESIAVPHGTVEAKDRVLKTGVVF CQYPEGVRFGEEEDDIARLVIGIAARNNEHIQVITSLTNALDDESVIERLAHTTSVDEVLELLAGRK ; 491 P00550 ? 2 UNP PTHP_ECOLI 2 ;MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKL MAELE ; 1 P0AA04 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1J6T A 2 ? 148 ? P00550 491 ? 637 ? 2 148 2 2 1J6T B 1 ? 85 ? P0AA04 1 ? 85 ? 301 385 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1J6T _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P00550 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'initiating methionine' _struct_ref_seq_dif.pdbx_auth_seq_num 1 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO3 non-polymer . 'PHOSPHITE ION' ? 'O3 P -3' 78.972 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 'TRIPLE RESONANCE FOR ASSIGNMENT OF PROTEIN' 1 2 1 'QUANTITATIVE J CORRELATION FOR COUPLING CONSTANTS' 1 3 1 '3D, 4D HETERONUCLEAR SEPARATED, FILTERED NOE EXPTS' 1 4 1 'IPAP EXPERIMENTS FOR DIPOLAR COUPLINGS' 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 308.00 _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '10 mM SODIUM PHOSPHATE' _pdbx_nmr_exptl_sample_conditions.temperature_units K _pdbx_nmr_exptl_sample_conditions.label ? _pdbx_nmr_exptl_sample_conditions.pH_units ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 'AVANCE DMX' Bruker 500 ? 2 'AVANCE DMX' Bruker 600 ? 3 'AVANCE DRX' Bruker 750 ? 4 'AVANCE DRX' Bruker 800 ? 5 'AVANCE DRX' Bruker 800 ? # _pdbx_nmr_refine.entry_id 1J6T _pdbx_nmr_refine.method 'CONJOINED RIGID BODY/TORSION ANGLE DYNAMICS' _pdbx_nmr_refine.details ;THE STRUCTURES WERE CALCULATED BY CONJOINED RIGID BODY/TORSION ANGLE DYNAMICS (SCHWIETERS & CLORE (2001) J.MAGN.RESON 152, 288-302; (CLORE & BEWLEY (2002) J.MAGN.RESON. 154, 329-335) THE TARGET FUNCTIONS COMPRISES TERMS FOR THE NOE RESTRAINTS, THE SIDECHAIN TORSION ANGLE RESTRAINTS, THE BACKBONE TORSION ANGLE RESTRAINTS FOR 4 VARIABLE REGIONS OF IIAMTL, THE DIPOLAR COUPLING RESTRAINTS (CLORE ET AL. J.MAGN.RESON. 131, 159-162 (1998); J.MAGN.RESON. 133, 216-221(1998)), THE RADIUS OF GYRATION (KUSZEWSKI ET AL. (1999), AND A QUARTIC VAN DER WAALS REPULSION TERM (NILGES ET AL. (1988) FEBS LETT. 229, 129- 136). THE STARTING COORDINATES COME FROM THE X-RAY STRUCTURES (WITH PROTONS ADDED) OF E. COLI HPR (1POH, JIA ET AL. (1993) J.BIOL.CHEM. 268, 22940-22501, RESOLUTION 1.5 A); AND IIAMTL (MOLECULE D OF 1A3A, VAN MONTFORT ET AL. STRUCTURE 5, 217-225 (1998); RESOLUTION 1.8A). SEVERAL DIFFERENT INITIAL ORIENTATIONS OF THE TWO PROTEINS WERE EMPLOYED WITH THE CA-CA DISTANCE BETWEEN THE ACTIVE SITE HISTIDINES RANGING FROM 28 TO 95 A, INCLUDING ORIENTATIONS WHERE THE TWO ACTIVE SITE HISTIDINES ARE NOT OPPOSED AND WHERE HPR IS DIRECTED TOWARDS THE FACE OF IIAMTL OPPOSITE TO THE IIAMTL ACTIVE SITE. THE BACKBONE COORDINATES AND NON-INTERFACIAL SIDECHAINS (EXCLUDING THE FOUR VARIABLE REGIONS OF IIAMTL: RESIDUES 51-54, 66-78, 91-96 AND 104-110) ARE TREATED AS RIGID BODIES THROUGHOUT WITH IIAMTL HELD FIXED, HPR ALLOWED TO ROTATE AND TRANSLATE, AND THE AXIS OF THE DIPOLAR COUPLING ALIGNMENT TENSOR FREE TO ROTATE. THE INTERFACIAL SIDECHAINS, AS WELL AS THE BACKBONE AND SIDECHAINS OF THE FOUR VARIABLE REGIONS OF IIAMTL, ARE GIVEN FULL TORSIONAL DEGREES OF FREEDOM. ALSO NOTE THAT GLU59 AND HIS111 ARE REFINED IN TWO ALTERNATE CONFORMATIONS. IN THIS ENTRY THE LAST COLUMN REPRESENTS THE AVERAGE RMS DIFFERENCE BETWEEN THE INDIVIDUAL SIMULATED ANNEALING STRUCTURES AND THE MEAN COORDINATE POSITIONS. IT IS IMPORTANT TO NOTE THAT THE VALUES GIVEN FOR THE BACKBONE ATOMS AND NON-INTERFACIAL SIDECHAINS (EXCLUDING THE FOUR VARIABLE REGIONS OF IIAMTL) PROVIDE ONLY A MEASURE OF THE PRECISION WITH WHICH THE RELATIVE ORIENTATION OF THE TWO PROTEINS HAVE BEEN DETERMINED AND DOES NOT TAKE INTO ACCOUNT THE ERRORS IN THE X-RAY COORDINATES OF HPR AND IIAMTL. RESIDUE NUMBERING: IIAMTL: 4-147 (RESIDUES 1-3 ARE DISORDERED IN SOLUTION AND NOT VISIBLE IN THE ELECTRON DENSITY MAP OF THE CRYSTAL STRUCTURE OF THE FREE PROTEIN). HPR: 301-385 (CORRESPONDING TO RESIDUES 1-85). PHOSPHATE: RESIDUE 200 THREE SETS OF COORDINATES ARE GIVEN: MODEL 1: RESTRAINED REGULARIZED MEAN COORDINATES OF THE UNPHOSPHORYLATED HPR-IIAGLC COMPLEX SOLVED ON THE BASIS OF 107 INTERMOLECULAR INTERPROTON DISTANCE DISTANCE RESTRAINTS, 105 INTRAMOLECULAR DISTANCE RESTRAINTS (RELATING TO INTERFACIAL SIDECHAINS, AS WELL AS THE FOUR VARIABLE REGIONS OF IIAMTL), 70 INTERFACIAL SIDECHAIN TORSION ANGLE RESTRAINTS, 62 TORSION ANGLE RESTRAINTS FOR THE VARIABLE REGIONS OF IIAMTL, AND 528 RESIDUAL DIPOLAR COUPLINGS. CROSS-VALIDATION WAS USED FOR THE DIPOLAR COUPLINGS (CLORE AND GARRETT (1999) J. AM. CHEM. SOC. 121, 9008-9012). MODEL 2: RESTRAINED REGULARIZED MEAN COORDINATES FOR THE MODEL OF THE DISSOCIATIVE PHOSPHORYL TRANSITION STATE HPR-IIAMTL COMPLEX. EXPERIMENTAL RESTRAINTS ARE IDENTICAL TO THOSE USED FOR MODEL 3, BUT COVALENT GEOMETRY RESTRAINTS ARE INCLUDED RELATING TO THE PENTACOORDINATE PHOSPHORYL GROUP IN A TRIGONAL BIPYRAMIDAL GEOMETRY. THE STRUCTURE IS DERIVED FROM MODEL 3 BY RESTRAINED MINIMIZATION. THE N-P BOND LENGTHS ARE RESTRAINED TO 3 A. THE CA-CA DISTANCE BETWEEN HIS315 (HPR) AND HIS65 (IIAMTL) REMAINS ESSENTIALLY UNCHANGED FROM MODEL 3, BUT THE ND1-NE2 DISTANCE BETWEEN HIS315 AND HIS65 IS REDUCED TO 6 A, WITH ESSENTIALLY IDEALIZED GEOMETRY OF THE PHOSPHORYL TRANSITION STATE. THE ND1-NE2 DISTANCE CORRESPONDS TO A DISSOCIATIVE TRANSITION STATE. THE RMS DIFFERENCE BETWEEN THE MEAN STRUCTURE OF THE UNPHOSPHORYLATED COMPLEX (MODEL 3) AND THE TRANSITION STATE COMPLEX IS 0.2 A FOR BACKBONE COORDINATES IMMEDIATELY ADJACENT TO THE ACTIVE SITE HISTIDINES (RESIDUES 64-66 AND RESIDUES 316-317). THE REMAINING BACKBONE COORDINATES DO NOT SHIFT. MODEL 3: RESTRAINED REGULARIZED MEAN COORDINATES FOR THE MODEL OF THE ASSOCIATIVE PHOSPHORYL TRANSITION STATE HPR-IIAGLC COMPLEX. CALCULATED LIKE MODEL 2 BUT WITH THE N-P BOND LENGTHS RESTRAINED TO 2A. THE STRUCTURE IS DERIVED FROM MODEL 1 BY RESTRAINED MINIMIZATION. THE RMS DIFFERENCE BETWEEN THE MEAN STRUCTURES OF THE UNPHOSPHORYLATED COMPLEX (MODEL 1) AND THE TRANSITION STATE COMPLEX IS 0.4 A FOR BACKBONE COORDINATES IMMEDIATELY ADJACENT TO THE ACTIVE SITE HISTIDINES (RESIDUES 64-66 AND RESIDUES 316-317). THE REMAINING BACKBONE COORDINATES DO NOT SHIFT. HPR-IIAMTL COMPLEX DEVIATIONS FROM IDEALIZED GEOMETRY: BONDS 0.006 A, ANGLES 0.82 DEG, IMPROPER TORSIONS 0.97 DEG RMS DEVIATIONS FROM NOE DISTANCE RESTRAINTS: 0.007 A RMS DEVIATIONS FROM SIDECHAIN TORSION ANGLE RESTRAINTS: 0.26 DEG. RMS DEVIATIONS FROM BACKBONE TORSION ANGLE RESTRAINTS: 1.2 DEG. DIPOLAR COUPLING R-FACTORS (CLORE AND GARRETT (1999) J. AM. CHEM. SOC. 121, 9008-9012): HPR IIAMTL NH 19.1% 19.2% CaH 25.9% 18.7% NC' 34.0% 32.1% [NOTE ONE ALIGNMENT TENSOR IS USED FOR THE NH DIPOLAR COUPLINGS (FOR BOTH HPR AND IIAMTL), AND ANOTHER FOR THE CAH AND NC' DIPOLAR COUPLINGS (FOR BOTH HPR AND IIAMTL), SINCE THE LATTER SET OF DIPOLAR COUPLINGS WERE OBTAINED FROM A DIFFERENT BATCH OF PEG/HEXANOL THAN THE FORMER. THE ORIENTATION OF THE TWO ALIGNMENT TENSORS DIFFERS BY ONLY 1.9 DEG. NOTE THE ALIGNMENT TENSORS FOR HPR AND IIAMTL ARE THE SAME. FOR REFERENCE THE DIPOLAR COUPLING R-FACTORS FOR THE FREE STRUCTURES (USING INDIVIDUAL ALIGNMENT TENSORS FOR THE TWO PROTEINS) ARE 21.3% (NH), 21.1% (CaH), 33.6% (NC') FOR THE X-RAY STRUCTURE OF HPR, AND 19.2% (NH), 18.0% (CaH) AND 32.0% (NC') FOR THE RESTRAINED REGULARIZED MEAN STRUCTURE OF IIAMTL IN THE COMPLEX]. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1J6T _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 3 _pdbx_nmr_ensemble.conformer_selection_criteria 'REGULARIZED MEAN STRUCTURES' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name 'X-PLOR_NIH (HTTP://NMR.CIT.NIH.GOV/XPLOR_NIH)' _pdbx_nmr_software.version ? _pdbx_nmr_software.authors 'CLORE, KUSZEWSKI, SCHWIETERS, TJANDRA' _pdbx_nmr_software.ordinal 1 # _exptl.entry_id 1J6T _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? _exptl.details ;IPAP EXPERIMENTS FOR DIPOLAR COUPLINGS. DIPOLAR COUPLINGS WERE MEASURED IN A NEMATIC PHASE OF A 4-5% PEG/HEXANOL (SURFACTANT TO ALCOHOL RATION OF 0.96) ; # _struct.entry_id 1J6T _struct.title ;COMPLEX OF ENZYME IIAMTL AND THE HISTIDINE-CONTAINING PHOSPHOCARRIER PROTEIN HPR FROM ESCHERICHIA COLI NMR, RESTRAINED REGULARIZED MEAN STRUCTURE ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1J6T _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'PHOSPHOTRANSFERASE, TRANSFERASE, KINASE, SUGAR TRANSPORT, COMPLEX (TRANSFERASE-PHOSPHOCARRIER)' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 8 ? GLU A 10 ? GLY A 8 GLU A 10 5 ? 3 HELX_P HELX_P2 2 THR A 20 ? GLY A 35 ? THR A 20 GLY A 35 1 ? 16 HELX_P HELX_P3 3 GLU A 41 ? THR A 53 ? GLU A 41 THR A 53 1 ? 13 HELX_P HELX_P4 4 THR A 67 ? VAL A 74 ? THR A 67 VAL A 74 5 ? 8 HELX_P HELX_P5 5 ALA A 106 ? ASN A 109 ? ALA A 106 ASN A 109 5 ? 4 HELX_P HELX_P6 6 GLU A 110 ? LEU A 122 ? GLU A 110 LEU A 122 1 ? 13 HELX_P HELX_P7 7 ASP A 124 ? THR A 134 ? ASP A 124 THR A 134 1 ? 11 HELX_P HELX_P8 8 SER A 136 ? ALA A 145 ? SER A 136 ALA A 145 1 ? 10 HELX_P HELX_P9 9 HIS B 15 ? GLY B 28 ? HIS B 315 GLY B 328 1 ? 14 HELX_P HELX_P10 10 SER B 46 ? GLN B 51 ? SER B 346 GLN B 351 1 ? 6 HELX_P HELX_P11 11 ASP B 69 ? LEU B 84 ? ASP B 369 LEU B 384 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 12 ? PHE A 13 ? ILE A 12 PHE A 13 A 2 GLY A 78 ? ARG A 89 ? GLY A 78 ARG A 89 A 3 ILE A 97 ? ALA A 105 ? ILE A 97 ALA A 105 A 4 ILE A 61 ? ALA A 62 ? ILE A 61 ALA A 62 B 1 PHE B 2 ? THR B 7 ? PHE B 302 THR B 307 B 2 VAL B 60 ? GLU B 66 ? VAL B 360 GLU B 366 B 3 GLU B 32 ? SER B 37 ? GLU B 332 SER B 337 B 4 LYS B 40 ? SER B 43 ? LYS B 340 SER B 343 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 13 ? N PHE A 13 O GLN A 83 ? O GLN A 83 A 2 3 N CYS A 82 ? N CYS A 82 O VAL A 101 ? O VAL A 101 A 3 4 O ILE A 102 ? O ILE A 102 N ALA A 62 ? N ALA A 62 B 1 2 N VAL B 6 ? N VAL B 306 O VAL B 61 ? O VAL B 361 B 2 3 O SER B 64 ? O SER B 364 N THR B 34 ? N THR B 334 B 3 4 N VAL B 35 ? N VAL B 335 O ALA B 42 ? O ALA B 342 # _database_PDB_matrix.entry_id 1J6T _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1J6T _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 ASN 3 3 ? ? ? A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 TYR 37 37 37 TYR TYR A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 GLN 44 44 44 GLN GLN A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 PRO 54 54 54 PRO PRO A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 PRO 64 64 64 PRO PRO A . n A 1 65 HIS 65 65 65 HIS HIS A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 PHE 81 81 81 PHE PHE A . n A 1 82 CYS 82 82 82 CYS CYS A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 TYR 84 84 84 TYR TYR A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 PHE 90 90 90 PHE PHE A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 ASP 96 96 96 ASP ASP A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 ARG 107 107 107 ARG ARG A . n A 1 108 ASN 108 108 108 ASN ASN A . n A 1 109 ASN 109 109 109 ASN ASN A . n A 1 110 GLU 110 110 110 GLU GLU A . n A 1 111 HIS 111 111 111 HIS HIS A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 GLN 113 113 113 GLN GLN A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 THR 116 116 116 THR THR A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 THR 119 119 119 THR THR A . n A 1 120 ASN 120 120 120 ASN ASN A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 ASP 123 123 123 ASP ASP A . n A 1 124 ASP 124 124 124 ASP ASP A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 VAL 127 127 127 VAL VAL A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 GLU 129 129 129 GLU GLU A . n A 1 130 ARG 130 130 130 ARG ARG A . n A 1 131 LEU 131 131 131 LEU LEU A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 HIS 133 133 133 HIS HIS A . n A 1 134 THR 134 134 134 THR THR A . n A 1 135 THR 135 135 135 THR THR A . n A 1 136 SER 136 136 136 SER SER A . n A 1 137 VAL 137 137 137 VAL VAL A . n A 1 138 ASP 138 138 138 ASP ASP A . n A 1 139 GLU 139 139 139 GLU GLU A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 LEU 141 141 141 LEU LEU A . n A 1 142 GLU 142 142 142 GLU GLU A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 ALA 145 145 145 ALA ALA A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 ARG 147 147 147 ARG ARG A . n A 1 148 LYS 148 148 ? ? ? A . n B 2 1 MET 1 301 301 MET MET B . n B 2 2 PHE 2 302 302 PHE PHE B . n B 2 3 GLN 3 303 303 GLN GLN B . n B 2 4 GLN 4 304 304 GLN GLN B . n B 2 5 GLU 5 305 305 GLU GLU B . n B 2 6 VAL 6 306 306 VAL VAL B . n B 2 7 THR 7 307 307 THR THR B . n B 2 8 ILE 8 308 308 ILE ILE B . n B 2 9 THR 9 309 309 THR THR B . n B 2 10 ALA 10 310 310 ALA ALA B . n B 2 11 PRO 11 311 311 PRO PRO B . n B 2 12 ASN 12 312 312 ASN ASN B . n B 2 13 GLY 13 313 313 GLY GLY B . n B 2 14 LEU 14 314 314 LEU LEU B . n B 2 15 HIS 15 315 315 HIS HIS B . n B 2 16 THR 16 316 316 THR THR B . n B 2 17 ARG 17 317 317 ARG ARG B . n B 2 18 PRO 18 318 318 PRO PRO B . n B 2 19 ALA 19 319 319 ALA ALA B . n B 2 20 ALA 20 320 320 ALA ALA B . n B 2 21 GLN 21 321 321 GLN GLN B . n B 2 22 PHE 22 322 322 PHE PHE B . n B 2 23 VAL 23 323 323 VAL VAL B . n B 2 24 LYS 24 324 324 LYS LYS B . n B 2 25 GLU 25 325 325 GLU GLU B . n B 2 26 ALA 26 326 326 ALA ALA B . n B 2 27 LYS 27 327 327 LYS LYS B . n B 2 28 GLY 28 328 328 GLY GLY B . n B 2 29 PHE 29 329 329 PHE PHE B . n B 2 30 THR 30 330 330 THR THR B . n B 2 31 SER 31 331 331 SER SER B . n B 2 32 GLU 32 332 332 GLU GLU B . n B 2 33 ILE 33 333 333 ILE ILE B . n B 2 34 THR 34 334 334 THR THR B . n B 2 35 VAL 35 335 335 VAL VAL B . n B 2 36 THR 36 336 336 THR THR B . n B 2 37 SER 37 337 337 SER SER B . n B 2 38 ASN 38 338 338 ASN ASN B . n B 2 39 GLY 39 339 339 GLY GLY B . n B 2 40 LYS 40 340 340 LYS LYS B . n B 2 41 SER 41 341 341 SER SER B . n B 2 42 ALA 42 342 342 ALA ALA B . n B 2 43 SER 43 343 343 SER SER B . n B 2 44 ALA 44 344 344 ALA ALA B . n B 2 45 LYS 45 345 345 LYS LYS B . n B 2 46 SER 46 346 346 SER SER B . n B 2 47 LEU 47 347 347 LEU LEU B . n B 2 48 PHE 48 348 348 PHE PHE B . n B 2 49 LYS 49 349 349 LYS LYS B . n B 2 50 LEU 50 350 350 LEU LEU B . n B 2 51 GLN 51 351 351 GLN GLN B . n B 2 52 THR 52 352 352 THR THR B . n B 2 53 LEU 53 353 353 LEU LEU B . n B 2 54 GLY 54 354 354 GLY GLY B . n B 2 55 LEU 55 355 355 LEU LEU B . n B 2 56 THR 56 356 356 THR THR B . n B 2 57 GLN 57 357 357 GLN GLN B . n B 2 58 GLY 58 358 358 GLY GLY B . n B 2 59 THR 59 359 359 THR THR B . n B 2 60 VAL 60 360 360 VAL VAL B . n B 2 61 VAL 61 361 361 VAL VAL B . n B 2 62 THR 62 362 362 THR THR B . n B 2 63 ILE 63 363 363 ILE ILE B . n B 2 64 SER 64 364 364 SER SER B . n B 2 65 ALA 65 365 365 ALA ALA B . n B 2 66 GLU 66 366 366 GLU GLU B . n B 2 67 GLY 67 367 367 GLY GLY B . n B 2 68 GLU 68 368 368 GLU GLU B . n B 2 69 ASP 69 369 369 ASP ASP B . n B 2 70 GLU 70 370 370 GLU GLU B . n B 2 71 GLN 71 371 371 GLN GLN B . n B 2 72 LYS 72 372 372 LYS LYS B . n B 2 73 ALA 73 373 373 ALA ALA B . n B 2 74 VAL 74 374 374 VAL VAL B . n B 2 75 GLU 75 375 375 GLU GLU B . n B 2 76 HIS 76 376 376 HIS HIS B . n B 2 77 LEU 77 377 377 LEU LEU B . n B 2 78 VAL 78 378 378 VAL VAL B . n B 2 79 LYS 79 379 379 LYS LYS B . n B 2 80 LEU 80 380 380 LEU LEU B . n B 2 81 MET 81 381 381 MET MET B . n B 2 82 ALA 82 382 382 ALA ALA B . n B 2 83 GLU 83 383 383 GLU GLU B . n B 2 84 LEU 84 384 384 LEU LEU B . n B 2 85 GLU 85 385 385 GLU GLU B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id PO3 _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 200 _pdbx_nonpoly_scheme.auth_seq_num 200 _pdbx_nonpoly_scheme.pdb_mon_id PO3 _pdbx_nonpoly_scheme.auth_mon_id PHO _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1340 ? 1 MORE -6 ? 1 'SSA (A^2)' 10990 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-11-13 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2021-06-30 5 'Structure model' 2 1 2022-12-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' diffrn 3 4 'Structure model' diffrn_radiation 4 4 'Structure model' diffrn_radiation_wavelength 5 4 'Structure model' pdbx_nmr_refine 6 4 'Structure model' pdbx_nmr_spectrometer 7 4 'Structure model' pdbx_nonpoly_scheme 8 4 'Structure model' pdbx_struct_assembly 9 4 'Structure model' pdbx_struct_assembly_prop 10 4 'Structure model' pdbx_struct_oper_list 11 4 'Structure model' pdbx_validate_close_contact 12 4 'Structure model' pdbx_validate_planes 13 4 'Structure model' pdbx_validate_torsion 14 4 'Structure model' struct_asym 15 5 'Structure model' database_2 16 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.group_PDB' 10 4 'Structure model' '_atom_site.label_alt_id' 11 4 'Structure model' '_atom_site.label_asym_id' 12 4 'Structure model' '_atom_site.label_atom_id' 13 4 'Structure model' '_atom_site.label_comp_id' 14 4 'Structure model' '_atom_site.label_entity_id' 15 4 'Structure model' '_atom_site.label_seq_id' 16 4 'Structure model' '_atom_site.occupancy' 17 4 'Structure model' '_atom_site.pdbx_PDB_model_num' 18 4 'Structure model' '_atom_site.type_symbol' 19 4 'Structure model' '_pdbx_nmr_refine.details' 20 4 'Structure model' '_pdbx_nmr_spectrometer.model' 21 4 'Structure model' '_pdbx_validate_close_contact.PDB_model_num' 22 4 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_1' 23 4 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_2' 24 4 'Structure model' '_pdbx_validate_close_contact.auth_atom_id_1' 25 4 'Structure model' '_pdbx_validate_close_contact.auth_atom_id_2' 26 4 'Structure model' '_pdbx_validate_close_contact.auth_comp_id_1' 27 4 'Structure model' '_pdbx_validate_close_contact.auth_comp_id_2' 28 4 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_1' 29 4 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2' 30 4 'Structure model' '_pdbx_validate_close_contact.dist' 31 4 'Structure model' '_pdbx_validate_planes.PDB_model_num' 32 4 'Structure model' '_pdbx_validate_torsion.phi' 33 4 'Structure model' '_pdbx_validate_torsion.psi' 34 5 'Structure model' '_database_2.pdbx_DOI' 35 5 'Structure model' '_database_2.pdbx_database_accession' 36 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HA A LEU 7 ? ? HD22 A ASN 11 ? ? 1.14 2 1 HH A TYR 42 ? ? H A GLY 66 ? ? 1.17 3 1 HG1 A THR 134 ? ? H A SER 136 ? ? 1.30 4 1 HG B SER 343 ? ? H B LYS 345 ? ? 1.33 5 1 HH22 A ARG 99 ? ? OE2 A GLU 129 ? ? 1.41 6 1 O B ILE 308 ? ? H B GLY 358 ? ? 1.58 7 1 NE2 A HIS 65 ? ? P B PO3 200 ? ? 2.16 8 1 ND1 B HIS 315 ? ? P B PO3 200 ? ? 2.18 9 2 HH A TYR 42 ? ? H A GLY 66 ? ? 1.04 10 2 HA A LEU 7 ? ? HD22 A ASN 11 ? ? 1.14 11 2 HG1 A THR 134 ? ? H A SER 136 ? ? 1.30 12 2 HG B SER 343 ? ? H B LYS 345 ? ? 1.33 13 2 HH22 A ARG 99 ? ? OE2 A GLU 129 ? ? 1.41 14 2 O B ILE 308 ? ? H B GLY 358 ? ? 1.58 15 2 OG1 B THR 316 ? ? O3 B PO3 200 ? ? 2.04 16 3 HH A TYR 42 ? ? H A GLY 66 ? ? 0.98 17 3 HA A LEU 7 ? ? HD22 A ASN 11 ? ? 1.14 18 3 HG1 A THR 134 ? ? H A SER 136 ? ? 1.30 19 3 HG B SER 343 ? ? H B LYS 345 ? ? 1.33 20 3 HH22 A ARG 99 ? ? OE2 A GLU 129 ? ? 1.42 21 3 HE A ARG 49 ? ? NE2 A HIS 65 ? ? 1.55 22 3 O B ILE 308 ? ? H B GLY 358 ? ? 1.58 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS B 315 ? ? -80.85 -159.83 2 3 HIS B 315 ? ? -69.41 -179.71 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 3 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 317 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.075 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 147 ? O ? A ARG 147 O 2 1 Y 1 B GLU 385 ? O ? B GLU 85 O 3 2 Y 1 A ARG 147 ? O ? A ARG 147 O 4 2 Y 1 B GLU 385 ? O ? B GLU 85 O 5 3 Y 1 A ARG 147 ? O ? A ARG 147 O 6 3 Y 1 B GLU 385 ? O ? B GLU 85 O # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ALA 2 ? A ALA 2 3 1 Y 1 A ASN 3 ? A ASN 3 4 1 Y 1 A LYS 148 ? A LYS 148 5 2 Y 1 A MET 1 ? A MET 1 6 2 Y 1 A ALA 2 ? A ALA 2 7 2 Y 1 A ASN 3 ? A ASN 3 8 2 Y 1 A LYS 148 ? A LYS 148 9 3 Y 1 A MET 1 ? A MET 1 10 3 Y 1 A ALA 2 ? A ALA 2 11 3 Y 1 A ASN 3 ? A ASN 3 12 3 Y 1 A LYS 148 ? A LYS 148 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'PHOSPHITE ION' _pdbx_entity_nonpoly.comp_id PO3 #