data_1JLM # _entry.id 1JLM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1JLM pdb_00001jlm 10.2210/pdb1jlm/pdb WWPDB D_1000174342 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1JLM _pdbx_database_status.recvd_initial_deposition_date 1996-04-09 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lee, J.-O.' 1 'Liddington, R.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Two conformations of the integrin A-domain (I-domain): a pathway for activation?' Structure 3 1333 1340 1995 STRUE6 UK 0969-2126 2005 ? 8747460 '10.1016/S0969-2126(01)00271-4' 1 'Crystal Structure of the a Domain from the Alpha Subunit of Integrin Cr3 (Cd11B/Cd18)' 'Cell(Cambridge,Mass.)' 80 631 ? 1995 CELLB5 US 0092-8674 0998 ? ? ? 2 'A Novel Divalent Cation-Binding Site in the a Domain of the Beta 2 Integrin Cr3 (Cd11B/Cd18) is Essential for Ligand Binding' 'Cell(Cambridge,Mass.)' 72 857 ? 1993 CELLB5 US 0092-8674 0998 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lee, J.O.' 1 ? primary 'Bankston, L.A.' 2 ? primary 'Arnaout, M.A.' 3 ? primary 'Liddington, R.C.' 4 ? 1 'Lee, J.O.' 5 ? 1 'Rieu, P.' 6 ? 1 'Arnaout, M.A.' 7 ? 1 'Liddington, R.' 8 ? 2 'Michishita, M.' 9 ? 2 'Videm, V.' 10 ? 2 'Arnaout, M.A.' 11 ? # _cell.entry_id 1JLM _cell.length_a 135.000 _cell.length_b 37.100 _cell.length_c 38.500 _cell.angle_alpha 90.00 _cell.angle_beta 92.60 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JLM _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man INTEGRIN 21994.117 1 ? ? I-DOMAIN ? 2 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 3 water nat water 18.015 105 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'INTEGRIN ALPHA-M' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GCPQEDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEFQNNPNPRSLVKPITQLL GRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLGYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNT IASKPPRDHVFQVNNFEALKTIQNQLREKIFA ; _entity_poly.pdbx_seq_one_letter_code_can ;GCPQEDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEFQNNPNPRSLVKPITQLL GRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLGYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNT IASKPPRDHVFQVNNFEALKTIQNQLREKIFA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 CYS n 1 3 PRO n 1 4 GLN n 1 5 GLU n 1 6 ASP n 1 7 SER n 1 8 ASP n 1 9 ILE n 1 10 ALA n 1 11 PHE n 1 12 LEU n 1 13 ILE n 1 14 ASP n 1 15 GLY n 1 16 SER n 1 17 GLY n 1 18 SER n 1 19 ILE n 1 20 ILE n 1 21 PRO n 1 22 HIS n 1 23 ASP n 1 24 PHE n 1 25 ARG n 1 26 ARG n 1 27 MET n 1 28 LYS n 1 29 GLU n 1 30 PHE n 1 31 VAL n 1 32 SER n 1 33 THR n 1 34 VAL n 1 35 MET n 1 36 GLU n 1 37 GLN n 1 38 LEU n 1 39 LYS n 1 40 LYS n 1 41 SER n 1 42 LYS n 1 43 THR n 1 44 LEU n 1 45 PHE n 1 46 SER n 1 47 LEU n 1 48 MET n 1 49 GLN n 1 50 TYR n 1 51 SER n 1 52 GLU n 1 53 GLU n 1 54 PHE n 1 55 ARG n 1 56 ILE n 1 57 HIS n 1 58 PHE n 1 59 THR n 1 60 PHE n 1 61 LYS n 1 62 GLU n 1 63 PHE n 1 64 GLN n 1 65 ASN n 1 66 ASN n 1 67 PRO n 1 68 ASN n 1 69 PRO n 1 70 ARG n 1 71 SER n 1 72 LEU n 1 73 VAL n 1 74 LYS n 1 75 PRO n 1 76 ILE n 1 77 THR n 1 78 GLN n 1 79 LEU n 1 80 LEU n 1 81 GLY n 1 82 ARG n 1 83 THR n 1 84 HIS n 1 85 THR n 1 86 ALA n 1 87 THR n 1 88 GLY n 1 89 ILE n 1 90 ARG n 1 91 LYS n 1 92 VAL n 1 93 VAL n 1 94 ARG n 1 95 GLU n 1 96 LEU n 1 97 PHE n 1 98 ASN n 1 99 ILE n 1 100 THR n 1 101 ASN n 1 102 GLY n 1 103 ALA n 1 104 ARG n 1 105 LYS n 1 106 ASN n 1 107 ALA n 1 108 PHE n 1 109 LYS n 1 110 ILE n 1 111 LEU n 1 112 VAL n 1 113 VAL n 1 114 ILE n 1 115 THR n 1 116 ASP n 1 117 GLY n 1 118 GLU n 1 119 LYS n 1 120 PHE n 1 121 GLY n 1 122 ASP n 1 123 PRO n 1 124 LEU n 1 125 GLY n 1 126 TYR n 1 127 GLU n 1 128 ASP n 1 129 VAL n 1 130 ILE n 1 131 PRO n 1 132 GLU n 1 133 ALA n 1 134 ASP n 1 135 ARG n 1 136 GLU n 1 137 GLY n 1 138 VAL n 1 139 ILE n 1 140 ARG n 1 141 TYR n 1 142 VAL n 1 143 ILE n 1 144 GLY n 1 145 VAL n 1 146 GLY n 1 147 ASP n 1 148 ALA n 1 149 PHE n 1 150 ARG n 1 151 SER n 1 152 GLU n 1 153 LYS n 1 154 SER n 1 155 ARG n 1 156 GLN n 1 157 GLU n 1 158 LEU n 1 159 ASN n 1 160 THR n 1 161 ILE n 1 162 ALA n 1 163 SER n 1 164 LYS n 1 165 PRO n 1 166 PRO n 1 167 ARG n 1 168 ASP n 1 169 HIS n 1 170 VAL n 1 171 PHE n 1 172 GLN n 1 173 VAL n 1 174 ASN n 1 175 ASN n 1 176 PHE n 1 177 GLU n 1 178 ALA n 1 179 LEU n 1 180 LYS n 1 181 THR n 1 182 ILE n 1 183 GLN n 1 184 ASN n 1 185 GLN n 1 186 LEU n 1 187 ARG n 1 188 GLU n 1 189 LYS n 1 190 ILE n 1 191 PHE n 1 192 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PGEX-2T _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ITAM_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P11215 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MALRVLLLTALTLCHGFNLDTENAMTFQENARGFGQSVVQLQGSRVVVGAPQEIVAANQRGSLYQCDYSTGSCEPIRLQV PVEAVNMSLGLSLAATTSPPQLLACGPTVHQTCSENTYVKGLCFLFGSNLRQQPQKFPEALRGCPQEDSDIAFLIDGSGS IIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEFQNNPNPRSLVKPITQLLGRTHTATGIRKVVRELFN ITNGARKNAFKILVVITDGEKFGDPLGYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEA LKTIQNQLREKIFAIEGTQTGSSSSFEHEMSQEGFSAAITSNGPLLSTVGSYDWAGGVFLYTSKEKSTFINMTRVDSDMN DAYLGYAAAIILRNRVQSLVLGAPRYQHIGLVAMFRQNTGMWESNANVKGTQIGAYFGASLCSVDVDSNGSTDLVLIGAP HYYEQTRGGQVSVCPLPRGRARWQCDAVLYGEQGQPWGRFGAALTVLGDVNGDKLTDVAIGAPGEEDNRGAVYLFHGTSG SGISPSHSQRIAGSKLSPRLQYFGQSLSGGQDLTMDGLVDLTVGAQGHVLLLRSQPVLRVKAIMEFNPREVARNVFECND QVVKGKEAGEVRVCLHVQKSTRDRLREGQIQSVVTYDLALDSGRPHSRAVFNETKNSTRRQTQVLGLTQTCETLKLQLPN CIEDPVSPIVLRLNFSLVGTPLSAFGNLRPVLAEDAQRLFTALFPFEKNCGNDNICQDDLSITFSFMSLDCLVVGGPREF NVTVTVRNDGEDSYRTQVTFFFPLDLSYRKVSTLQNQRSQRSWRLACESASSTEVSGALKSTSCSINHPIFPENSEVTFN ITFDVDSKASLGNKLLLKANVTSENNMPRTNKTEFQLELPVKYAVYMVVTSHGVSTKYLNFTASENTSRVMQHQYQVSNL GQRSLPISLVFLVPVRLNQTVIWDRPQVTFSENLSSTCHTKERLPSHSDFLAELRKAPVVNCSIAVCQRIQCDIPFFGIQ EEFNATLKGNLSFDWYIKTSHNHLLIVSTAEILFNDSVFTLLPGQGAFVRSQTETKVEPFEVPNPLPLIVGSSVGGLLLL ALITAALYKLGFFKRQYKDMMSEGGPPGAEPQ ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1JLM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 192 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P11215 _struct_ref_seq.db_align_beg 143 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 334 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 127 _struct_ref_seq.pdbx_auth_seq_align_end 318 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1JLM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.19 _exptl_crystal.density_percent_sol 43.80 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9800 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C _diffrn_source.pdbx_wavelength 0.9800 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1JLM _reflns.observed_criterion_sigma_I 0. _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 12. _reflns.d_resolution_high 2.0 _reflns.number_obs 12933 _reflns.number_all ? _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.0600000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.6 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 98.5 _reflns_shell.Rmerge_I_obs 0.2690000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 3.1 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1JLM _refine.ls_number_reflns_obs 11948 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2. _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 12.0 _refine.ls_d_res_high 2.0 _refine.ls_percent_reflns_obs 92.3 _refine.ls_R_factor_obs 0.2190000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2190000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 26. _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 1IDO _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1515 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 105 _refine_hist.number_atoms_total 1621 _refine_hist.d_res_high 2.0 _refine_hist.d_res_low 12.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.013 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.75 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 24.9 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.60 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1JLM _struct.title 'I-DOMAIN FROM INTEGRIN CR3, MN2+ BOUND' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1JLM _struct_keywords.pdbx_keywords 'CELL ADHESION PROTEIN' _struct_keywords.text 'INTEGRIN, CELL ADHESION PROTEIN, GLYCOPROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 22 ? GLN A 37 ? HIS A 148 GLN A 163 1 ? 16 HELX_P HELX_P2 2 PHE A 60 ? ASN A 66 ? PHE A 186 ASN A 192 1 ? 7 HELX_P HELX_P3 3 ARG A 70 ? LYS A 74 ? ARG A 196 LYS A 200 1 ? 5 HELX_P HELX_P4 4 THR A 85 ? LEU A 96 ? THR A 211 LEU A 222 1 ? 12 HELX_P HELX_P5 5 TYR A 126 ? ARG A 135 ? TYR A 252 ARG A 261 1 ? 10 HELX_P HELX_P6 6 GLU A 152 ? ILE A 161 ? GLU A 278 ILE A 287 1 ? 10 HELX_P HELX_P7 7 GLU A 177 ? ALA A 192 ? GLU A 303 ALA A 318 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A SER 16 OG ? ? ? 1_555 B MN . MN ? ? A SER 142 A MN 400 1_555 ? ? ? ? ? ? ? 2.286 ? ? metalc2 metalc ? ? A SER 18 OG ? ? ? 1_555 B MN . MN ? ? A SER 144 A MN 400 1_555 ? ? ? ? ? ? ? 2.093 ? ? metalc3 metalc ? ? A ASP 116 OD1 ? ? ? 1_555 B MN . MN ? ? A ASP 242 A MN 400 1_555 ? ? ? ? ? ? ? 2.266 ? ? metalc4 metalc ? ? B MN . MN ? ? ? 1_555 C HOH . O ? ? A MN 400 A HOH 404 1_555 ? ? ? ? ? ? ? 2.067 ? ? metalc5 metalc ? ? B MN . MN ? ? ? 1_555 C HOH . O ? ? A MN 400 A HOH 408 1_555 ? ? ? ? ? ? ? 2.417 ? ? metalc6 metalc ? ? B MN . MN ? ? ? 1_555 C HOH . O ? ? A MN 400 A HOH 409 1_555 ? ? ? ? ? ? ? 2.138 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 164 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 290 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 165 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 291 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.37 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 HIS A 169 ? VAL A 173 ? HIS A 295 VAL A 299 A 2 ILE A 139 ? VAL A 145 ? ILE A 265 VAL A 271 A 3 PHE A 108 ? THR A 115 ? PHE A 234 THR A 241 A 4 ASP A 6 ? GLY A 15 ? ASP A 132 GLY A 141 A 5 LYS A 42 ? TYR A 50 ? LYS A 168 TYR A 176 A 6 PHE A 54 ? ILE A 56 ? PHE A 180 ILE A 182 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 171 ? O PHE A 297 N VAL A 142 ? N VAL A 268 A 2 3 O ILE A 139 ? O ILE A 265 N LYS A 109 ? N LYS A 235 A 3 4 O PHE A 108 ? O PHE A 234 N ASP A 8 ? N ASP A 134 A 4 5 O SER A 7 ? O SER A 133 N LEU A 44 ? N LEU A 170 A 5 6 O GLN A 49 ? O GLN A 175 N ARG A 55 ? N ARG A 181 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details MN Unknown ? ? ? ? 7 'MANGANESE BINDING SITE' AC1 Software A MN 400 ? 6 'BINDING SITE FOR RESIDUE MN A 400' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 MN 7 MN B . ? MN A 400 . ? 1_555 ? 2 MN 7 SER A 16 ? SER A 142 . ? 1_555 ? 3 MN 7 SER A 18 ? SER A 144 . ? 1_555 ? 4 MN 7 ASP A 116 ? ASP A 242 . ? 1_555 ? 5 MN 7 HOH C . ? HOH A 404 . ? 1_555 ? 6 MN 7 HOH C . ? HOH A 408 . ? 1_555 ? 7 MN 7 HOH C . ? HOH A 409 . ? 1_555 ? 8 AC1 6 SER A 16 ? SER A 142 . ? 1_555 ? 9 AC1 6 SER A 18 ? SER A 144 . ? 1_555 ? 10 AC1 6 ASP A 116 ? ASP A 242 . ? 1_555 ? 11 AC1 6 HOH C . ? HOH A 404 . ? 1_555 ? 12 AC1 6 HOH C . ? HOH A 408 . ? 1_555 ? 13 AC1 6 HOH C . ? HOH A 409 . ? 1_555 ? # _database_PDB_matrix.entry_id 1JLM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1JLM _atom_sites.fract_transf_matrix[1][1] 0.007407 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000336 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026954 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026001 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 127 ? ? ? A . n A 1 2 CYS 2 128 ? ? ? A . n A 1 3 PRO 3 129 ? ? ? A . n A 1 4 GLN 4 130 ? ? ? A . n A 1 5 GLU 5 131 ? ? ? A . n A 1 6 ASP 6 132 132 ASP ASP A . n A 1 7 SER 7 133 133 SER SER A . n A 1 8 ASP 8 134 134 ASP ASP A . n A 1 9 ILE 9 135 135 ILE ILE A . n A 1 10 ALA 10 136 136 ALA ALA A . n A 1 11 PHE 11 137 137 PHE PHE A . n A 1 12 LEU 12 138 138 LEU LEU A . n A 1 13 ILE 13 139 139 ILE ILE A . n A 1 14 ASP 14 140 140 ASP ASP A . n A 1 15 GLY 15 141 141 GLY GLY A . n A 1 16 SER 16 142 142 SER SER A . n A 1 17 GLY 17 143 143 GLY GLY A . n A 1 18 SER 18 144 144 SER SER A . n A 1 19 ILE 19 145 145 ILE ILE A . n A 1 20 ILE 20 146 146 ILE ILE A . n A 1 21 PRO 21 147 147 PRO PRO A . n A 1 22 HIS 22 148 148 HIS HIS A . n A 1 23 ASP 23 149 149 ASP ASP A . n A 1 24 PHE 24 150 150 PHE PHE A . n A 1 25 ARG 25 151 151 ARG ARG A . n A 1 26 ARG 26 152 152 ARG ARG A . n A 1 27 MET 27 153 153 MET MET A . n A 1 28 LYS 28 154 154 LYS LYS A . n A 1 29 GLU 29 155 155 GLU GLU A . n A 1 30 PHE 30 156 156 PHE PHE A . n A 1 31 VAL 31 157 157 VAL VAL A . n A 1 32 SER 32 158 158 SER SER A . n A 1 33 THR 33 159 159 THR THR A . n A 1 34 VAL 34 160 160 VAL VAL A . n A 1 35 MET 35 161 161 MET MET A . n A 1 36 GLU 36 162 162 GLU GLU A . n A 1 37 GLN 37 163 163 GLN GLN A . n A 1 38 LEU 38 164 164 LEU LEU A . n A 1 39 LYS 39 165 165 LYS LYS A . n A 1 40 LYS 40 166 166 LYS LYS A . n A 1 41 SER 41 167 167 SER SER A . n A 1 42 LYS 42 168 168 LYS LYS A . n A 1 43 THR 43 169 169 THR THR A . n A 1 44 LEU 44 170 170 LEU LEU A . n A 1 45 PHE 45 171 171 PHE PHE A . n A 1 46 SER 46 172 172 SER SER A . n A 1 47 LEU 47 173 173 LEU LEU A . n A 1 48 MET 48 174 174 MET MET A . n A 1 49 GLN 49 175 175 GLN GLN A . n A 1 50 TYR 50 176 176 TYR TYR A . n A 1 51 SER 51 177 177 SER SER A . n A 1 52 GLU 52 178 178 GLU GLU A . n A 1 53 GLU 53 179 179 GLU GLU A . n A 1 54 PHE 54 180 180 PHE PHE A . n A 1 55 ARG 55 181 181 ARG ARG A . n A 1 56 ILE 56 182 182 ILE ILE A . n A 1 57 HIS 57 183 183 HIS HIS A . n A 1 58 PHE 58 184 184 PHE PHE A . n A 1 59 THR 59 185 185 THR THR A . n A 1 60 PHE 60 186 186 PHE PHE A . n A 1 61 LYS 61 187 187 LYS LYS A . n A 1 62 GLU 62 188 188 GLU GLU A . n A 1 63 PHE 63 189 189 PHE PHE A . n A 1 64 GLN 64 190 190 GLN GLN A . n A 1 65 ASN 65 191 191 ASN ASN A . n A 1 66 ASN 66 192 192 ASN ASN A . n A 1 67 PRO 67 193 193 PRO PRO A . n A 1 68 ASN 68 194 194 ASN ASN A . n A 1 69 PRO 69 195 195 PRO PRO A . n A 1 70 ARG 70 196 196 ARG ARG A . n A 1 71 SER 71 197 197 SER SER A . n A 1 72 LEU 72 198 198 LEU LEU A . n A 1 73 VAL 73 199 199 VAL VAL A . n A 1 74 LYS 74 200 200 LYS LYS A . n A 1 75 PRO 75 201 201 PRO PRO A . n A 1 76 ILE 76 202 202 ILE ILE A . n A 1 77 THR 77 203 203 THR THR A . n A 1 78 GLN 78 204 204 GLN GLN A . n A 1 79 LEU 79 205 205 LEU LEU A . n A 1 80 LEU 80 206 206 LEU LEU A . n A 1 81 GLY 81 207 207 GLY GLY A . n A 1 82 ARG 82 208 208 ARG ARG A . n A 1 83 THR 83 209 209 THR THR A . n A 1 84 HIS 84 210 210 HIS HIS A . n A 1 85 THR 85 211 211 THR THR A . n A 1 86 ALA 86 212 212 ALA ALA A . n A 1 87 THR 87 213 213 THR THR A . n A 1 88 GLY 88 214 214 GLY GLY A . n A 1 89 ILE 89 215 215 ILE ILE A . n A 1 90 ARG 90 216 216 ARG ARG A . n A 1 91 LYS 91 217 217 LYS LYS A . n A 1 92 VAL 92 218 218 VAL VAL A . n A 1 93 VAL 93 219 219 VAL VAL A . n A 1 94 ARG 94 220 220 ARG ARG A . n A 1 95 GLU 95 221 221 GLU GLU A . n A 1 96 LEU 96 222 222 LEU LEU A . n A 1 97 PHE 97 223 223 PHE PHE A . n A 1 98 ASN 98 224 224 ASN ASN A . n A 1 99 ILE 99 225 225 ILE ILE A . n A 1 100 THR 100 226 226 THR THR A . n A 1 101 ASN 101 227 227 ASN ASN A . n A 1 102 GLY 102 228 228 GLY GLY A . n A 1 103 ALA 103 229 229 ALA ALA A . n A 1 104 ARG 104 230 230 ARG ARG A . n A 1 105 LYS 105 231 231 LYS LYS A . n A 1 106 ASN 106 232 232 ASN ASN A . n A 1 107 ALA 107 233 233 ALA ALA A . n A 1 108 PHE 108 234 234 PHE PHE A . n A 1 109 LYS 109 235 235 LYS LYS A . n A 1 110 ILE 110 236 236 ILE ILE A . n A 1 111 LEU 111 237 237 LEU LEU A . n A 1 112 VAL 112 238 238 VAL VAL A . n A 1 113 VAL 113 239 239 VAL VAL A . n A 1 114 ILE 114 240 240 ILE ILE A . n A 1 115 THR 115 241 241 THR THR A . n A 1 116 ASP 116 242 242 ASP ASP A . n A 1 117 GLY 117 243 243 GLY GLY A . n A 1 118 GLU 118 244 244 GLU GLU A . n A 1 119 LYS 119 245 245 LYS LYS A . n A 1 120 PHE 120 246 246 PHE PHE A . n A 1 121 GLY 121 247 247 GLY GLY A . n A 1 122 ASP 122 248 248 ASP ASP A . n A 1 123 PRO 123 249 249 PRO PRO A . n A 1 124 LEU 124 250 250 LEU LEU A . n A 1 125 GLY 125 251 251 GLY GLY A . n A 1 126 TYR 126 252 252 TYR TYR A . n A 1 127 GLU 127 253 253 GLU GLU A . n A 1 128 ASP 128 254 254 ASP ASP A . n A 1 129 VAL 129 255 255 VAL VAL A . n A 1 130 ILE 130 256 256 ILE ILE A . n A 1 131 PRO 131 257 257 PRO PRO A . n A 1 132 GLU 132 258 258 GLU GLU A . n A 1 133 ALA 133 259 259 ALA ALA A . n A 1 134 ASP 134 260 260 ASP ASP A . n A 1 135 ARG 135 261 261 ARG ARG A . n A 1 136 GLU 136 262 262 GLU GLU A . n A 1 137 GLY 137 263 263 GLY GLY A . n A 1 138 VAL 138 264 264 VAL VAL A . n A 1 139 ILE 139 265 265 ILE ILE A . n A 1 140 ARG 140 266 266 ARG ARG A . n A 1 141 TYR 141 267 267 TYR TYR A . n A 1 142 VAL 142 268 268 VAL VAL A . n A 1 143 ILE 143 269 269 ILE ILE A . n A 1 144 GLY 144 270 270 GLY GLY A . n A 1 145 VAL 145 271 271 VAL VAL A . n A 1 146 GLY 146 272 272 GLY GLY A . n A 1 147 ASP 147 273 273 ASP ASP A . n A 1 148 ALA 148 274 274 ALA ALA A . n A 1 149 PHE 149 275 275 PHE PHE A . n A 1 150 ARG 150 276 276 ARG ARG A . n A 1 151 SER 151 277 277 SER SER A . n A 1 152 GLU 152 278 278 GLU GLU A . n A 1 153 LYS 153 279 279 LYS LYS A . n A 1 154 SER 154 280 280 SER SER A . n A 1 155 ARG 155 281 281 ARG ARG A . n A 1 156 GLN 156 282 282 GLN GLN A . n A 1 157 GLU 157 283 283 GLU GLU A . n A 1 158 LEU 158 284 284 LEU LEU A . n A 1 159 ASN 159 285 285 ASN ASN A . n A 1 160 THR 160 286 286 THR THR A . n A 1 161 ILE 161 287 287 ILE ILE A . n A 1 162 ALA 162 288 288 ALA ALA A . n A 1 163 SER 163 289 289 SER SER A . n A 1 164 LYS 164 290 290 LYS LYS A . n A 1 165 PRO 165 291 291 PRO PRO A . n A 1 166 PRO 166 292 292 PRO PRO A . n A 1 167 ARG 167 293 293 ARG ARG A . n A 1 168 ASP 168 294 294 ASP ASP A . n A 1 169 HIS 169 295 295 HIS HIS A . n A 1 170 VAL 170 296 296 VAL VAL A . n A 1 171 PHE 171 297 297 PHE PHE A . n A 1 172 GLN 172 298 298 GLN GLN A . n A 1 173 VAL 173 299 299 VAL VAL A . n A 1 174 ASN 174 300 300 ASN ASN A . n A 1 175 ASN 175 301 301 ASN ASN A . n A 1 176 PHE 176 302 302 PHE PHE A . n A 1 177 GLU 177 303 303 GLU GLU A . n A 1 178 ALA 178 304 304 ALA ALA A . n A 1 179 LEU 179 305 305 LEU LEU A . n A 1 180 LYS 180 306 306 LYS LYS A . n A 1 181 THR 181 307 307 THR THR A . n A 1 182 ILE 182 308 308 ILE ILE A . n A 1 183 GLN 183 309 309 GLN GLN A . n A 1 184 ASN 184 310 310 ASN ASN A . n A 1 185 GLN 185 311 311 GLN GLN A . n A 1 186 LEU 186 312 312 LEU LEU A . n A 1 187 ARG 187 313 313 ARG ARG A . n A 1 188 GLU 188 314 314 GLU GLU A . n A 1 189 LYS 189 315 315 LYS LYS A . n A 1 190 ILE 190 316 316 ILE ILE A . n A 1 191 PHE 191 317 317 PHE PHE A . n A 1 192 ALA 192 318 318 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN 1 400 400 MN MN A . C 3 HOH 1 401 401 HOH HOH A . C 3 HOH 2 402 402 HOH HOH A . C 3 HOH 3 403 403 HOH HOH A . C 3 HOH 4 404 404 HOH HOH A . C 3 HOH 5 405 405 HOH HOH A . C 3 HOH 6 406 406 HOH HOH A . C 3 HOH 7 407 407 HOH HOH A . C 3 HOH 8 408 408 HOH HOH A . C 3 HOH 9 409 409 HOH HOH A . C 3 HOH 10 410 410 HOH HOH A . C 3 HOH 11 411 411 HOH HOH A . C 3 HOH 12 412 412 HOH HOH A . C 3 HOH 13 413 413 HOH HOH A . C 3 HOH 14 414 414 HOH HOH A . C 3 HOH 15 415 415 HOH HOH A . C 3 HOH 16 416 416 HOH HOH A . C 3 HOH 17 417 417 HOH HOH A . C 3 HOH 18 418 418 HOH HOH A . C 3 HOH 19 419 419 HOH HOH A . C 3 HOH 20 420 420 HOH HOH A . C 3 HOH 21 421 421 HOH HOH A . C 3 HOH 22 422 422 HOH HOH A . C 3 HOH 23 423 423 HOH HOH A . C 3 HOH 24 424 424 HOH HOH A . C 3 HOH 25 425 425 HOH HOH A . C 3 HOH 26 426 426 HOH HOH A . C 3 HOH 27 427 427 HOH HOH A . C 3 HOH 28 428 428 HOH HOH A . C 3 HOH 29 429 429 HOH HOH A . C 3 HOH 30 430 430 HOH HOH A . C 3 HOH 31 431 431 HOH HOH A . C 3 HOH 32 432 432 HOH HOH A . C 3 HOH 33 433 433 HOH HOH A . C 3 HOH 34 434 434 HOH HOH A . C 3 HOH 35 435 435 HOH HOH A . C 3 HOH 36 436 436 HOH HOH A . C 3 HOH 37 437 437 HOH HOH A . C 3 HOH 38 438 438 HOH HOH A . C 3 HOH 39 439 439 HOH HOH A . C 3 HOH 40 440 440 HOH HOH A . C 3 HOH 41 441 441 HOH HOH A . C 3 HOH 42 442 442 HOH HOH A . C 3 HOH 43 443 443 HOH HOH A . C 3 HOH 44 444 444 HOH HOH A . C 3 HOH 45 445 445 HOH HOH A . C 3 HOH 46 446 446 HOH HOH A . C 3 HOH 47 447 447 HOH HOH A . C 3 HOH 48 448 448 HOH HOH A . C 3 HOH 49 449 449 HOH HOH A . C 3 HOH 50 450 450 HOH HOH A . C 3 HOH 51 451 451 HOH HOH A . C 3 HOH 52 452 452 HOH HOH A . C 3 HOH 53 453 453 HOH HOH A . C 3 HOH 54 454 454 HOH HOH A . C 3 HOH 55 455 455 HOH HOH A . C 3 HOH 56 456 456 HOH HOH A . C 3 HOH 57 457 457 HOH HOH A . C 3 HOH 58 458 458 HOH HOH A . C 3 HOH 59 459 459 HOH HOH A . C 3 HOH 60 460 460 HOH HOH A . C 3 HOH 61 461 461 HOH HOH A . C 3 HOH 62 462 462 HOH HOH A . C 3 HOH 63 463 463 HOH HOH A . C 3 HOH 64 464 464 HOH HOH A . C 3 HOH 65 465 465 HOH HOH A . C 3 HOH 66 466 466 HOH HOH A . C 3 HOH 67 467 467 HOH HOH A . C 3 HOH 68 468 468 HOH HOH A . C 3 HOH 69 469 469 HOH HOH A . C 3 HOH 70 470 470 HOH HOH A . C 3 HOH 71 471 471 HOH HOH A . C 3 HOH 72 472 472 HOH HOH A . C 3 HOH 73 473 473 HOH HOH A . C 3 HOH 74 474 474 HOH HOH A . C 3 HOH 75 475 475 HOH HOH A . C 3 HOH 76 476 476 HOH HOH A . C 3 HOH 77 477 477 HOH HOH A . C 3 HOH 78 478 478 HOH HOH A . C 3 HOH 79 479 479 HOH HOH A . C 3 HOH 80 480 480 HOH HOH A . C 3 HOH 81 481 481 HOH HOH A . C 3 HOH 82 482 482 HOH HOH A . C 3 HOH 83 483 483 HOH HOH A . C 3 HOH 84 484 484 HOH HOH A . C 3 HOH 85 485 485 HOH HOH A . C 3 HOH 86 486 486 HOH HOH A . C 3 HOH 87 487 487 HOH HOH A . C 3 HOH 88 488 488 HOH HOH A . C 3 HOH 89 489 489 HOH HOH A . C 3 HOH 90 490 490 HOH HOH A . C 3 HOH 91 491 491 HOH HOH A . C 3 HOH 92 492 492 HOH HOH A . C 3 HOH 93 493 493 HOH HOH A . C 3 HOH 94 494 494 HOH HOH A . C 3 HOH 95 495 495 HOH HOH A . C 3 HOH 96 496 496 HOH HOH A . C 3 HOH 97 497 497 HOH HOH A . C 3 HOH 98 498 498 HOH HOH A . C 3 HOH 99 499 499 HOH HOH A . C 3 HOH 100 500 500 HOH HOH A . C 3 HOH 101 501 501 HOH HOH A . C 3 HOH 102 502 502 HOH HOH A . C 3 HOH 103 503 503 HOH HOH A . C 3 HOH 104 504 504 HOH HOH A . C 3 HOH 105 505 505 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG ? A SER 16 ? A SER 142 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 OG ? A SER 18 ? A SER 144 ? 1_555 95.7 ? 2 OG ? A SER 16 ? A SER 142 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 OD1 ? A ASP 116 ? A ASP 242 ? 1_555 93.4 ? 3 OG ? A SER 18 ? A SER 144 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 OD1 ? A ASP 116 ? A ASP 242 ? 1_555 92.4 ? 4 OG ? A SER 16 ? A SER 142 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 O ? C HOH . ? A HOH 404 ? 1_555 75.3 ? 5 OG ? A SER 18 ? A SER 144 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 O ? C HOH . ? A HOH 404 ? 1_555 169.5 ? 6 OD1 ? A ASP 116 ? A ASP 242 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 O ? C HOH . ? A HOH 404 ? 1_555 82.8 ? 7 OG ? A SER 16 ? A SER 142 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 O ? C HOH . ? A HOH 408 ? 1_555 94.3 ? 8 OG ? A SER 18 ? A SER 144 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 O ? C HOH . ? A HOH 408 ? 1_555 87.4 ? 9 OD1 ? A ASP 116 ? A ASP 242 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 O ? C HOH . ? A HOH 408 ? 1_555 172.4 ? 10 O ? C HOH . ? A HOH 404 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 O ? C HOH . ? A HOH 408 ? 1_555 98.6 ? 11 OG ? A SER 16 ? A SER 142 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 O ? C HOH . ? A HOH 409 ? 1_555 177.6 ? 12 OG ? A SER 18 ? A SER 144 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 O ? C HOH . ? A HOH 409 ? 1_555 83.0 ? 13 OD1 ? A ASP 116 ? A ASP 242 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 O ? C HOH . ? A HOH 409 ? 1_555 88.7 ? 14 O ? C HOH . ? A HOH 404 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 O ? C HOH . ? A HOH 409 ? 1_555 106.1 ? 15 O ? C HOH . ? A HOH 408 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 O ? C HOH . ? A HOH 409 ? 1_555 83.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-01-11 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-03-21 5 'Structure model' 1 4 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' Other 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_detector 2 4 'Structure model' pdbx_database_status 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_initial_refinement_model 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_detector.pdbx_collection_date' 2 4 'Structure model' '_pdbx_database_status.process_site' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.value' 8 5 'Structure model' '_struct_conn.pdbx_dist_value' 9 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 10 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 11 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 12 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 13 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 14 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 15 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 19 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 20 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 21 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 22 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 23 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 X-PLOR phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 177 ? ? -148.80 -99.87 2 1 ASN A 192 ? ? -155.85 69.98 3 1 PRO A 193 ? ? -70.72 48.98 4 1 LEU A 206 ? ? 66.59 168.54 5 1 ASN A 232 ? ? 88.73 0.65 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 127 ? A GLY 1 2 1 Y 1 A CYS 128 ? A CYS 2 3 1 Y 1 A PRO 129 ? A PRO 3 4 1 Y 1 A GLN 130 ? A GLN 4 5 1 Y 1 A GLU 131 ? A GLU 5 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MANGANESE (II) ION' MN 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1IDO _pdbx_initial_refinement_model.details ? #