HEADER VIRAL PROTEIN 17-JUL-01 1JMA TITLE CRYSTAL STRUCTURE OF THE HERPES SIMPLEX VIRUS GLYCOPROTEIN D BOUND TO TITLE 2 THE CELLULAR RECEPTOR HVEA/HVEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: HERPESVIRUS ENTRY MEDIATOR; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: HVEA-162; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GLYCOPROTEIN D; COMPND 9 CHAIN: A; COMPND 10 FRAGMENT: GD-285; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 1; SOURCE 3 ORGANISM_COMMON: HERPES SIMPLEX VIRUS TYPE 1; SOURCE 4 ORGANISM_TAXID: 10298; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS V-TYPE IG MOLECULE AND TNFR SUPERFAMILY, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.CARFI,S.H.WILLIS,J.C.WHITBECK,C.KRUMMENACKER,G.H.COHEN, AUTHOR 2 R.J.EISENBERG,D.C.WILEY REVDAT 5 29-JUL-20 1JMA 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 13-JUL-11 1JMA 1 VERSN REVDAT 3 24-FEB-09 1JMA 1 VERSN REVDAT 2 01-APR-03 1JMA 1 JRNL REVDAT 1 26-SEP-01 1JMA 0 JRNL AUTH A.CARFI,S.H.WILLIS,J.C.WHITBECK,C.KRUMMENACHER,G.H.COHEN, JRNL AUTH 2 R.J.EISENBERG,D.C.WILEY JRNL TITL HERPES SIMPLEX VIRUS GLYCOPROTEIN D BOUND TO THE HUMAN JRNL TITL 2 RECEPTOR HVEA. JRNL REF MOL.CELL V. 8 169 2001 JRNL REFN ISSN 1097-2765 JRNL PMID 11511370 JRNL DOI 10.1016/S1097-2765(01)00298-2 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.I.MONTGOMERY,M.S.WARNER,B.J.LURN,P.G.SPEAR REMARK 1 TITL HERPES SIMPLEX VIRUS-1 ENTRY INTO CELLS MEDIATED BY A NOVEL REMARK 1 TITL 2 MEMBER OF THE TNF/NGF RECEPTOR FAMILY REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 87 427 1996 REMARK 1 REFN ISSN 0092-8674 REMARK 1 DOI 10.1016/S0092-8674(00)81363-X REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 22562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1094 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2765 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -11.42300 REMARK 3 B22 (A**2) : -11.42300 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : -11.04400 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 22.84600 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : 0.35 REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.546 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MLF REFINEMENT WITH CNS REMARK 4 REMARK 4 1JMA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 11 REMARK 11 RESIDUES 1 TO 3, 93,94 AND 106 TO 167 INCLUDING 5 C-TERMINUS HIS REMARK 11 TAG RESIDUES IN CHAIN B, AND RESIDUES 260 TO 290 THAT INCLUDES 5 REMARK 11 C-TERIMUS HIS TAG RESIDUES WERE NOT VISIBLE IN THE ELECTRON REMARK 11 DENSITY MAPS DUE TO DISORDER REMARK 12 REMARK 12 WEAK OR NO ELECTRON DENSITY WAS OBSERVED FOR THE REMARK 12 SIDE CHAINS OF THE FOLLOWING RESIDUES: REMARK 12 CHAIN B RESIDUES: 5, 6, 18, 31, 71, 95 AND 96. REMARK 12 CHAIN A RESIDUES: 16, 18, 20, 21, 35, 89, 91, 186, 196 AND 259 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-01. REMARK 100 THE DEPOSITION ID IS D_1000013934. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9196 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, TRUNCATE REMARK 200 DATA SCALING SOFTWARE : CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24260 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 20.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M AMMONIUM SULFATE AND 5% PEG400 REMARK 280 AND TRIS-HCL 100MM PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.98000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.96000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.96000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.98000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 ASP B 93 REMARK 465 GLY B 94 REMARK 465 SER B 106 REMARK 465 SER B 107 REMARK 465 PRO B 108 REMARK 465 GLY B 109 REMARK 465 GLN B 110 REMARK 465 ARG B 111 REMARK 465 VAL B 112 REMARK 465 GLN B 113 REMARK 465 LYS B 114 REMARK 465 GLY B 115 REMARK 465 GLY B 116 REMARK 465 THR B 117 REMARK 465 GLU B 118 REMARK 465 SER B 119 REMARK 465 GLN B 120 REMARK 465 ASP B 121 REMARK 465 THR B 122 REMARK 465 LEU B 123 REMARK 465 CYS B 124 REMARK 465 GLN B 125 REMARK 465 ASN B 126 REMARK 465 CYS B 127 REMARK 465 PRO B 128 REMARK 465 PRO B 129 REMARK 465 GLY B 130 REMARK 465 THR B 131 REMARK 465 PHE B 132 REMARK 465 SER B 133 REMARK 465 PRO B 134 REMARK 465 ASN B 135 REMARK 465 GLY B 136 REMARK 465 THR B 137 REMARK 465 LEU B 138 REMARK 465 GLU B 139 REMARK 465 GLU B 140 REMARK 465 CYS B 141 REMARK 465 GLN B 142 REMARK 465 HIS B 143 REMARK 465 GLN B 144 REMARK 465 THR B 145 REMARK 465 LYS B 146 REMARK 465 CYS B 147 REMARK 465 SER B 148 REMARK 465 TRP B 149 REMARK 465 LEU B 150 REMARK 465 VAL B 151 REMARK 465 THR B 152 REMARK 465 LYS B 153 REMARK 465 ALA B 154 REMARK 465 GLY B 155 REMARK 465 ALA B 156 REMARK 465 GLY B 157 REMARK 465 THR B 158 REMARK 465 SER B 159 REMARK 465 SER B 160 REMARK 465 SER B 161 REMARK 465 HIS B 162 REMARK 465 HIS B 163 REMARK 465 HIS B 164 REMARK 465 HIS B 165 REMARK 465 HIS B 166 REMARK 465 HIS B 167 REMARK 465 THR A 260 REMARK 465 PRO A 261 REMARK 465 ASN A 262 REMARK 465 ALA A 263 REMARK 465 THR A 264 REMARK 465 GLN A 265 REMARK 465 PRO A 266 REMARK 465 GLU A 267 REMARK 465 LEU A 268 REMARK 465 ALA A 269 REMARK 465 PRO A 270 REMARK 465 GLU A 271 REMARK 465 ASP A 272 REMARK 465 PRO A 273 REMARK 465 GLU A 274 REMARK 465 ASP A 275 REMARK 465 SER A 276 REMARK 465 ALA A 277 REMARK 465 LEU A 278 REMARK 465 LEU A 279 REMARK 465 GLU A 280 REMARK 465 ASP A 281 REMARK 465 PRO A 282 REMARK 465 VAL A 283 REMARK 465 GLY A 284 REMARK 465 THR A 285 REMARK 465 HIS A 286 REMARK 465 HIS A 287 REMARK 465 HIS A 288 REMARK 465 HIS A 289 REMARK 465 HIS A 290 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 6 CB GLU B 6 CG 0.276 REMARK 500 GLU B 6 CG GLU B 6 CD 0.680 REMARK 500 ARG B 71 CB ARG B 71 CG -0.348 REMARK 500 GLU A 86 CA GLU A 86 CB 0.184 REMARK 500 ASP A 87 CB ASP A 87 CG -0.236 REMARK 500 ARG A 89 CD ARG A 89 NE -0.209 REMARK 500 SER A 258 C GLU A 259 N -0.145 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU B 6 CA - CB - CG ANGL. DEV. = -16.9 DEGREES REMARK 500 GLU B 6 CG - CD - OE1 ANGL. DEV. = 19.8 DEGREES REMARK 500 GLU B 6 CG - CD - OE2 ANGL. DEV. = -19.7 DEGREES REMARK 500 CYS B 29 CA - CB - SG ANGL. DEV. = -11.1 DEGREES REMARK 500 HIS B 96 CB - CA - C ANGL. DEV. = 14.6 DEGREES REMARK 500 GLU A 86 N - CA - CB ANGL. DEV. = 18.2 DEGREES REMARK 500 GLU A 86 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 ARG A 89 CG - CD - NE ANGL. DEV. = 37.0 DEGREES REMARK 500 GLN A 91 CG - CD - NE2 ANGL. DEV. = 20.5 DEGREES REMARK 500 CYS A 202 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 SER A 258 CA - C - N ANGL. DEV. = 15.0 DEGREES REMARK 500 SER A 258 O - C - N ANGL. DEV. = -15.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 6 -37.61 -38.19 REMARK 500 CYS B 29 -135.75 -48.49 REMARK 500 ALA B 64 -73.16 -49.82 REMARK 500 MET B 65 13.68 -51.55 REMARK 500 PHE A 17 77.42 -101.88 REMARK 500 ILE A 40 -53.01 -148.77 REMARK 500 PRO A 92 160.61 -48.64 REMARK 500 ALA A 126 55.59 -119.09 REMARK 500 PRO A 133 118.17 -38.67 REMARK 500 TYR A 137 -37.23 60.05 REMARK 500 ASN A 148 -8.74 93.90 REMARK 500 ALA A 155 52.27 40.00 REMARK 500 ASN A 171 -99.83 54.80 REMARK 500 PHE A 223 173.08 -54.38 REMARK 500 SER A 258 -78.45 -69.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 89 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 258 13.42 REMARK 500 REMARK 500 REMARK: NULL DBREF 1JMA B 1 161 UNP Q92956 TR14_HUMAN 39 199 DBREF 1JMA A 1 285 UNP P57083 VGLD_HSV1P 26 310 SEQRES 1 B 167 LEU PRO SER CYS LYS GLU ASP GLU TYR PRO VAL GLY SER SEQRES 2 B 167 GLU CYS CYS PRO LYS CYS SER PRO GLY TYR ARG VAL LYS SEQRES 3 B 167 GLU ALA CYS GLY GLU LEU THR GLY THR VAL CYS GLU PRO SEQRES 4 B 167 CYS PRO PRO GLY THR TYR ILE ALA HIS LEU ASN GLY LEU SEQRES 5 B 167 SER LYS CYS LEU GLN CYS GLN MET CYS ASP PRO ALA MET SEQRES 6 B 167 GLY LEU ARG ALA SER ARG ASN CYS SER ARG THR GLU ASN SEQRES 7 B 167 ALA VAL CYS GLY CYS SER PRO GLY HIS PHE CYS ILE VAL SEQRES 8 B 167 GLN ASP GLY ASP HIS CYS ALA ALA CYS ARG ALA TYR ALA SEQRES 9 B 167 THR SER SER PRO GLY GLN ARG VAL GLN LYS GLY GLY THR SEQRES 10 B 167 GLU SER GLN ASP THR LEU CYS GLN ASN CYS PRO PRO GLY SEQRES 11 B 167 THR PHE SER PRO ASN GLY THR LEU GLU GLU CYS GLN HIS SEQRES 12 B 167 GLN THR LYS CYS SER TRP LEU VAL THR LYS ALA GLY ALA SEQRES 13 B 167 GLY THR SER SER SER HIS HIS HIS HIS HIS HIS SEQRES 1 A 290 LYS TYR ALA LEU ALA ASP ALA SER LEU LYS MET ALA ASP SEQRES 2 A 290 PRO ASN ARG PHE ARG GLY LYS ASP LEU PRO VAL LEU ASP SEQRES 3 A 290 GLN LEU THR ASP PRO PRO GLY VAL ARG ARG VAL TYR HIS SEQRES 4 A 290 ILE GLN ALA GLY LEU PRO ASP PRO PHE GLN PRO PRO SER SEQRES 5 A 290 LEU PRO ILE THR VAL TYR TYR ALA VAL LEU GLU ARG ALA SEQRES 6 A 290 CYS ARG SER VAL LEU LEU ASN ALA PRO SER GLU ALA PRO SEQRES 7 A 290 GLN ILE VAL ARG GLY ALA SER GLU ASP VAL ARG LYS GLN SEQRES 8 A 290 PRO TYR ASN LEU THR ILE ALA TRP PHE ARG MET GLY GLY SEQRES 9 A 290 ASN CYS ALA ILE PRO ILE THR VAL MET GLU TYR THR GLU SEQRES 10 A 290 CYS SER TYR ASN LYS SER LEU GLY ALA CYS PRO ILE ARG SEQRES 11 A 290 THR GLN PRO ARG TRP ASN TYR TYR ASP SER PHE SER ALA SEQRES 12 A 290 VAL SER GLU ASP ASN LEU GLY PHE LEU MET HIS ALA PRO SEQRES 13 A 290 ALA PHE GLU THR ALA GLY THR TYR LEU ARG LEU VAL LYS SEQRES 14 A 290 ILE ASN ASP TRP THR GLU ILE THR GLN PHE ILE LEU GLU SEQRES 15 A 290 HIS ARG ALA LYS GLY SER CYS LYS TYR ALA LEU PRO LEU SEQRES 16 A 290 ARG ILE PRO PRO SER ALA CYS LEU SER PRO GLN ALA TYR SEQRES 17 A 290 GLN GLN GLY VAL THR VAL ASP SER ILE GLY MET LEU PRO SEQRES 18 A 290 ARG PHE ILE PRO GLU ASN GLN ARG THR VAL ALA VAL TYR SEQRES 19 A 290 SER LEU LYS ILE ALA GLY TRP HIS GLY PRO LYS ALA PRO SEQRES 20 A 290 TYR THR SER THR LEU LEU PRO PRO GLU LEU SER GLU THR SEQRES 21 A 290 PRO ASN ALA THR GLN PRO GLU LEU ALA PRO GLU ASP PRO SEQRES 22 A 290 GLU ASP SER ALA LEU LEU GLU ASP PRO VAL GLY THR HIS SEQRES 23 A 290 HIS HIS HIS HIS MODRES 1JMA ASN A 94 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET SO4 B 526 5 HET SO4 B 529 5 HET SO4 A 525 5 HET SO4 A 527 5 HET SO4 A 528 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 SO4 5(O4 S 2-) FORMUL 9 HOH *49(H2 O) HELIX 1 1 ASP A 6 MET A 11 5 6 HELIX 2 2 GLU A 76 GLY A 83 1 8 HELIX 3 3 SER A 85 LYS A 90 1 6 HELIX 4 4 ALA A 157 ALA A 161 5 5 HELIX 5 5 PRO A 198 CYS A 202 5 5 HELIX 6 6 SER A 204 GLN A 210 1 7 HELIX 7 7 ILE A 224 ILE A 238 1 15 HELIX 8 8 PRO A 254 GLU A 259 1 6 SHEET 1 A 3 TYR B 23 GLU B 27 0 SHEET 2 A 3 VAL B 36 PRO B 39 -1 O GLU B 38 N ARG B 24 SHEET 3 A 3 GLN A 27 LEU A 28 -1 O GLN A 27 N CYS B 37 SHEET 1 B 2 THR B 44 TYR B 45 0 SHEET 2 B 2 LEU B 56 GLN B 57 -1 O LEU B 56 N TYR B 45 SHEET 1 C 2 LEU B 67 ARG B 71 0 SHEET 2 C 2 VAL B 80 CYS B 83 -1 O VAL B 80 N ARG B 71 SHEET 1 D 2 HIS B 87 VAL B 91 0 SHEET 2 D 2 ALA B 99 ALA B 102 -1 O ARG B 101 N PHE B 88 SHEET 1 E 7 THR A 56 LEU A 62 0 SHEET 2 E 7 TRP A 173 HIS A 183 1 O GLN A 178 N TYR A 58 SHEET 3 E 7 GLY A 162 ILE A 170 -1 N TYR A 164 O PHE A 179 SHEET 4 E 7 TYR A 93 GLY A 103 -1 N ALA A 98 O LEU A 167 SHEET 5 E 7 CYS A 106 CYS A 118 -1 O ILE A 110 N TRP A 99 SHEET 6 E 7 ILE A 129 THR A 131 -1 O ILE A 129 N THR A 116 SHEET 7 E 7 ARG A 35 VAL A 37 1 N VAL A 37 O ARG A 130 SHEET 1 F 7 THR A 56 LEU A 62 0 SHEET 2 F 7 TRP A 173 HIS A 183 1 O GLN A 178 N TYR A 58 SHEET 3 F 7 GLY A 162 ILE A 170 -1 N TYR A 164 O PHE A 179 SHEET 4 F 7 TYR A 93 GLY A 103 -1 N ALA A 98 O LEU A 167 SHEET 5 F 7 CYS A 106 CYS A 118 -1 O ILE A 110 N TRP A 99 SHEET 6 F 7 ARG A 134 TRP A 135 -1 O ARG A 134 N VAL A 112 SHEET 7 F 7 LEU A 220 PRO A 221 -1 O LEU A 220 N TRP A 135 SHEET 1 G 4 SER A 142 VAL A 144 0 SHEET 2 G 4 PHE A 151 HIS A 154 -1 O LEU A 152 N ALA A 143 SHEET 3 G 4 SER A 68 LEU A 71 -1 N LEU A 71 O PHE A 151 SHEET 4 G 4 TYR A 248 THR A 249 1 O TYR A 248 N LEU A 70 SSBOND 1 CYS B 4 CYS B 15 1555 1555 2.04 SSBOND 2 CYS B 16 CYS B 29 1555 1555 2.02 SSBOND 3 CYS B 19 CYS B 37 1555 1555 2.04 SSBOND 4 CYS B 40 CYS B 55 1555 1555 2.03 SSBOND 5 CYS B 58 CYS B 73 1555 1555 2.04 SSBOND 6 CYS B 61 CYS B 81 1555 1555 2.04 SSBOND 7 CYS B 83 CYS B 100 1555 1555 2.04 SSBOND 8 CYS B 89 CYS B 97 1555 1555 2.05 SSBOND 9 CYS A 66 CYS A 189 1555 1555 2.06 SSBOND 10 CYS A 106 CYS A 202 1555 1555 2.04 SSBOND 11 CYS A 118 CYS A 127 1555 1555 2.05 LINK ND2 ASN A 94 C1 NAG C 1 1555 1555 1.41 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.39 CISPEP 1 GLY A 243 PRO A 244 0 0.94 CRYST1 129.154 129.154 80.940 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007743 0.004470 0.000000 0.00000 SCALE2 0.000000 0.008940 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012355 0.00000