HEADER BLOOD CLOTTING 18-JUL-01 1JMJ TITLE CRYSTAL STRUCTURE OF NATIVE HEPARIN COFACTOR II COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPARIN COFACTOR II; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HC-II; PROTEASE INHIBITOR LEUSERPIN 2; HLS2; SERINE (OR COMPND 5 CYSTEINE) PROTEINASE INHIBITOR, CLADE D (HEPARIN COFACTOR), MEMBER 1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS SERPIN, THROMBIN INHIBITOR, HEPARIN, BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR T.P.BAGLIN,R.W.CARRELL,F.C.CHURCH,J.A.HUNTINGTON REVDAT 5 03-APR-24 1JMJ 1 REMARK HETSYN REVDAT 4 29-JUL-20 1JMJ 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 13-JUL-11 1JMJ 1 VERSN REVDAT 2 24-FEB-09 1JMJ 1 VERSN REVDAT 1 30-AUG-02 1JMJ 0 JRNL AUTH T.P.BAGLIN,R.W.CARRELL,F.C.CHURCH,C.T.ESMON,J.A.HUNTINGTON JRNL TITL CRYSTAL STRUCTURES OF NATIVE AND THROMBIN-COMPLEXED HEPARIN JRNL TITL 2 COFACTOR II REVEAL A MULTISTEP ALLOSTERIC MECHANISM. JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 11079 2002 JRNL REFN ISSN 0027-8424 JRNL PMID 12169660 JRNL DOI 10.1073/PNAS.162232399 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.0 REMARK 3 NUMBER OF REFLECTIONS : 39156 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT : 994 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE : 0.3870 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 142 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.032 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6372 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 297 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 13.95000 REMARK 3 B22 (A**2) : -9.52000 REMARK 3 B33 (A**2) : -4.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 12.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.38 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.42 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.297 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.182 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.229 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.429 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JMJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-01. REMARK 100 THE DEPOSITION ID IS D_1000013938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4880 REMARK 200 MONOCHROMATOR : LIQUID GALLIUM REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40150 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 66.0 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : 0.14000 REMARK 200 FOR THE DATA SET : 4.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : 0.35000 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: SEVERAL SERPINS WERE TRIED BEST SOLUTION WITH REMARK 200 NATIVE ANTITHROMBIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MGCL2, TRIS, PEG 4000, GLYCEROL, PH REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP AT 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 GLY A 4 REMARK 465 PRO A 5 REMARK 465 LEU A 6 REMARK 465 ASP A 7 REMARK 465 GLN A 8 REMARK 465 LEU A 9 REMARK 465 GLU A 10 REMARK 465 LYS A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 GLU A 14 REMARK 465 THR A 15 REMARK 465 ALA A 16 REMARK 465 GLN A 17 REMARK 465 SER A 18 REMARK 465 ALA A 19 REMARK 465 ASP A 20 REMARK 465 PRO A 21 REMARK 465 GLN A 22 REMARK 465 TRP A 23 REMARK 465 GLU A 24 REMARK 465 GLN A 25 REMARK 465 LEU A 26 REMARK 465 ASN A 27 REMARK 465 ASN A 28 REMARK 465 LYS A 29 REMARK 465 ASN A 30 REMARK 465 LEU A 31 REMARK 465 SER A 32 REMARK 465 MET A 33 REMARK 465 PRO A 34 REMARK 465 LEU A 35 REMARK 465 LEU A 36 REMARK 465 PRO A 37 REMARK 465 ALA A 38 REMARK 465 ASP A 39 REMARK 465 PHE A 40 REMARK 465 HIS A 41 REMARK 465 LYS A 42 REMARK 465 GLU A 43 REMARK 465 ASN A 44 REMARK 465 THR A 45 REMARK 465 VAL A 46 REMARK 465 THR A 47 REMARK 465 ASN A 48 REMARK 465 ASP A 49 REMARK 465 TRP A 50 REMARK 465 ILE A 51 REMARK 465 PRO A 52 REMARK 465 GLU A 53 REMARK 465 GLY A 54 REMARK 465 GLU A 55 REMARK 465 GLU A 56 REMARK 465 ASP A 57 REMARK 465 ASP A 58 REMARK 465 ASP A 59 REMARK 465 TYR A 60 REMARK 465 ASP A 72 REMARK 465 TYR A 73 REMARK 465 ILE A 74 REMARK 465 ASP A 75 REMARK 465 ILE A 76 REMARK 465 VAL A 77 REMARK 465 ASP A 78 REMARK 465 SER A 79 REMARK 465 LEU A 80 REMARK 465 SER A 81 REMARK 465 VAL A 82 REMARK 465 SER A 83 REMARK 465 PRO A 84 REMARK 465 THR A 85 REMARK 465 ASP A 86 REMARK 465 SER A 87 REMARK 465 ASP A 88 REMARK 465 VAL A 89 REMARK 465 SER A 90 REMARK 465 ALA A 91 REMARK 465 GLY A 92 REMARK 465 ASN A 93 REMARK 465 ILE A 94 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 GLY B 4 REMARK 465 PRO B 5 REMARK 465 LEU B 6 REMARK 465 ASP B 7 REMARK 465 GLN B 8 REMARK 465 LEU B 9 REMARK 465 GLU B 10 REMARK 465 LYS B 11 REMARK 465 GLY B 12 REMARK 465 GLY B 13 REMARK 465 GLU B 14 REMARK 465 THR B 15 REMARK 465 ALA B 16 REMARK 465 GLN B 17 REMARK 465 SER B 18 REMARK 465 ALA B 19 REMARK 465 ASP B 20 REMARK 465 PRO B 21 REMARK 465 GLN B 22 REMARK 465 TRP B 23 REMARK 465 GLU B 24 REMARK 465 GLN B 25 REMARK 465 LEU B 26 REMARK 465 ASN B 27 REMARK 465 ASN B 28 REMARK 465 LYS B 29 REMARK 465 ASN B 30 REMARK 465 LEU B 31 REMARK 465 SER B 32 REMARK 465 MET B 33 REMARK 465 PRO B 34 REMARK 465 LEU B 35 REMARK 465 LEU B 36 REMARK 465 PRO B 37 REMARK 465 ALA B 38 REMARK 465 ASP B 39 REMARK 465 PHE B 40 REMARK 465 HIS B 41 REMARK 465 LYS B 42 REMARK 465 GLU B 43 REMARK 465 ASN B 44 REMARK 465 THR B 45 REMARK 465 VAL B 46 REMARK 465 THR B 47 REMARK 465 ASN B 48 REMARK 465 ASP B 49 REMARK 465 TRP B 50 REMARK 465 ILE B 51 REMARK 465 PRO B 52 REMARK 465 GLU B 53 REMARK 465 GLY B 54 REMARK 465 GLU B 55 REMARK 465 GLU B 56 REMARK 465 ASP B 57 REMARK 465 ASP B 58 REMARK 465 ASP B 59 REMARK 465 TYR B 60 REMARK 465 LEU B 61 REMARK 465 ASP B 62 REMARK 465 LEU B 63 REMARK 465 GLU B 64 REMARK 465 LYS B 65 REMARK 465 ILE B 66 REMARK 465 PHE B 67 REMARK 465 SER B 68 REMARK 465 GLU B 69 REMARK 465 ASP B 70 REMARK 465 ASP B 71 REMARK 465 ASP B 72 REMARK 465 TYR B 73 REMARK 465 ILE B 74 REMARK 465 ASP B 75 REMARK 465 ILE B 76 REMARK 465 VAL B 77 REMARK 465 ASP B 78 REMARK 465 SER B 79 REMARK 465 LEU B 80 REMARK 465 SER B 81 REMARK 465 VAL B 82 REMARK 465 SER B 83 REMARK 465 PRO B 84 REMARK 465 THR B 85 REMARK 465 ASP B 86 REMARK 465 SER B 87 REMARK 465 ASP B 88 REMARK 465 VAL B 89 REMARK 465 SER B 90 REMARK 465 ALA B 91 REMARK 465 GLY B 92 REMARK 465 ASN B 93 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 173 CD CE NZ REMARK 480 GLU A 175 CD OE1 OE2 REMARK 480 ARG A 189 NE CZ NH1 NH2 REMARK 480 ASP A 216 OD2 REMARK 480 GLU A 300 OE1 REMARK 480 GLN A 411 OE1 NE2 REMARK 480 ARG A 412 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 165 CD CE NZ REMARK 480 ARG B 193 CD NE CZ NH1 NH2 REMARK 480 ARG B 222 CD NE CZ NH1 NH2 REMARK 480 LYS B 364 CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 96 -63.27 108.80 REMARK 500 ASP A 166 -35.08 -37.61 REMARK 500 GLU A 175 170.52 176.83 REMARK 500 PHE A 226 15.38 57.51 REMARK 500 ASP A 233 85.01 -150.61 REMARK 500 GLU A 300 127.43 174.82 REMARK 500 ASP A 322 70.98 44.51 REMARK 500 PHE A 441 -2.01 -158.28 REMARK 500 PRO A 477 -7.18 -58.99 REMARK 500 LEU B 95 62.39 -113.18 REMARK 500 ASP B 233 86.57 -156.91 REMARK 500 PHE B 234 5.73 -69.68 REMARK 500 PHE B 441 -10.10 -154.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 290 NE2 REMARK 620 2 HIS A 292 ND1 94.2 REMARK 620 3 HOH A 502 O 88.3 164.2 REMARK 620 4 HOH A 551 O 139.2 97.8 70.6 REMARK 620 5 HOH A 631 O 94.1 99.4 96.0 121.8 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JMO RELATED DB: PDB DBREF 1JMJ A 1 480 UNP P05546 HEP2_HUMAN 20 499 DBREF 1JMJ B 1 480 UNP P05546 HEP2_HUMAN 20 499 SEQRES 1 A 480 GLY SER LYS GLY PRO LEU ASP GLN LEU GLU LYS GLY GLY SEQRES 2 A 480 GLU THR ALA GLN SER ALA ASP PRO GLN TRP GLU GLN LEU SEQRES 3 A 480 ASN ASN LYS ASN LEU SER MET PRO LEU LEU PRO ALA ASP SEQRES 4 A 480 PHE HIS LYS GLU ASN THR VAL THR ASN ASP TRP ILE PRO SEQRES 5 A 480 GLU GLY GLU GLU ASP ASP ASP TYR LEU ASP LEU GLU LYS SEQRES 6 A 480 ILE PHE SER GLU ASP ASP ASP TYR ILE ASP ILE VAL ASP SEQRES 7 A 480 SER LEU SER VAL SER PRO THR ASP SER ASP VAL SER ALA SEQRES 8 A 480 GLY ASN ILE LEU GLN LEU PHE HIS GLY LYS SER ARG ILE SEQRES 9 A 480 GLN ARG LEU ASN ILE LEU ASN ALA LYS PHE ALA PHE ASN SEQRES 10 A 480 LEU TYR ARG VAL LEU LYS ASP GLN VAL ASN THR PHE ASP SEQRES 11 A 480 ASN ILE PHE ILE ALA PRO VAL GLY ILE SER THR ALA MET SEQRES 12 A 480 GLY MET ILE SER LEU GLY LEU LYS GLY GLU THR HIS GLU SEQRES 13 A 480 GLN VAL HIS SER ILE LEU HIS PHE LYS ASP PHE VAL ASN SEQRES 14 A 480 ALA SER SER LYS TYR GLU ILE THR THR ILE HIS ASN LEU SEQRES 15 A 480 PHE ARG LYS LEU THR HIS ARG LEU PHE ARG ARG ASN PHE SEQRES 16 A 480 GLY TYR THR LEU ARG SER VAL ASN ASP LEU TYR ILE GLN SEQRES 17 A 480 LYS GLN PHE PRO ILE LEU LEU ASP PHE LYS THR LYS VAL SEQRES 18 A 480 ARG GLU TYR TYR PHE ALA GLU ALA GLN ILE ALA ASP PHE SEQRES 19 A 480 SER ASP PRO ALA PHE ILE SER LYS THR ASN ASN HIS ILE SEQRES 20 A 480 MET LYS LEU THR LYS GLY LEU ILE LYS ASP ALA LEU GLU SEQRES 21 A 480 ASN ILE ASP PRO ALA THR GLN MET MET ILE LEU ASN CYS SEQRES 22 A 480 ILE TYR PHE LYS GLY SER TRP VAL ASN LYS PHE PRO VAL SEQRES 23 A 480 GLU MET THR HIS ASN HIS ASN PHE ARG LEU ASN GLU ARG SEQRES 24 A 480 GLU VAL VAL LYS VAL SER MET MET GLN THR LYS GLY ASN SEQRES 25 A 480 PHE LEU ALA ALA ASN ASP GLN GLU LEU ASP CYS ASP ILE SEQRES 26 A 480 LEU GLN LEU GLU TYR VAL GLY GLY ILE SER MET LEU ILE SEQRES 27 A 480 VAL VAL PRO HIS LYS MET SER GLY MET LYS THR LEU GLU SEQRES 28 A 480 ALA GLN LEU THR PRO ARG VAL VAL GLU ARG TRP GLN LYS SEQRES 29 A 480 SER MET THR ASN ARG THR ARG GLU VAL LEU LEU PRO LYS SEQRES 30 A 480 PHE LYS LEU GLU LYS ASN TYR ASN LEU VAL GLU SER LEU SEQRES 31 A 480 LYS LEU MET GLY ILE ARG MET LEU PHE ASP LYS ASN GLY SEQRES 32 A 480 ASN MET ALA GLY ILE SER ASP GLN ARG ILE ALA ILE ASP SEQRES 33 A 480 LEU PHE LYS HIS GLN GLY THR ILE THR VAL ASN GLU GLU SEQRES 34 A 480 GLY THR GLN ALA THR THR VAL THR THR VAL GLY PHE MET SEQRES 35 A 480 PRO LEU SER THR GLN VAL ARG PHE THR VAL ASP ARG PRO SEQRES 36 A 480 PHE LEU PHE LEU ILE TYR GLU HIS ARG THR SER CYS LEU SEQRES 37 A 480 LEU PHE MET GLY ARG VAL ALA ASN PRO SER ARG SER SEQRES 1 B 480 GLY SER LYS GLY PRO LEU ASP GLN LEU GLU LYS GLY GLY SEQRES 2 B 480 GLU THR ALA GLN SER ALA ASP PRO GLN TRP GLU GLN LEU SEQRES 3 B 480 ASN ASN LYS ASN LEU SER MET PRO LEU LEU PRO ALA ASP SEQRES 4 B 480 PHE HIS LYS GLU ASN THR VAL THR ASN ASP TRP ILE PRO SEQRES 5 B 480 GLU GLY GLU GLU ASP ASP ASP TYR LEU ASP LEU GLU LYS SEQRES 6 B 480 ILE PHE SER GLU ASP ASP ASP TYR ILE ASP ILE VAL ASP SEQRES 7 B 480 SER LEU SER VAL SER PRO THR ASP SER ASP VAL SER ALA SEQRES 8 B 480 GLY ASN ILE LEU GLN LEU PHE HIS GLY LYS SER ARG ILE SEQRES 9 B 480 GLN ARG LEU ASN ILE LEU ASN ALA LYS PHE ALA PHE ASN SEQRES 10 B 480 LEU TYR ARG VAL LEU LYS ASP GLN VAL ASN THR PHE ASP SEQRES 11 B 480 ASN ILE PHE ILE ALA PRO VAL GLY ILE SER THR ALA MET SEQRES 12 B 480 GLY MET ILE SER LEU GLY LEU LYS GLY GLU THR HIS GLU SEQRES 13 B 480 GLN VAL HIS SER ILE LEU HIS PHE LYS ASP PHE VAL ASN SEQRES 14 B 480 ALA SER SER LYS TYR GLU ILE THR THR ILE HIS ASN LEU SEQRES 15 B 480 PHE ARG LYS LEU THR HIS ARG LEU PHE ARG ARG ASN PHE SEQRES 16 B 480 GLY TYR THR LEU ARG SER VAL ASN ASP LEU TYR ILE GLN SEQRES 17 B 480 LYS GLN PHE PRO ILE LEU LEU ASP PHE LYS THR LYS VAL SEQRES 18 B 480 ARG GLU TYR TYR PHE ALA GLU ALA GLN ILE ALA ASP PHE SEQRES 19 B 480 SER ASP PRO ALA PHE ILE SER LYS THR ASN ASN HIS ILE SEQRES 20 B 480 MET LYS LEU THR LYS GLY LEU ILE LYS ASP ALA LEU GLU SEQRES 21 B 480 ASN ILE ASP PRO ALA THR GLN MET MET ILE LEU ASN CYS SEQRES 22 B 480 ILE TYR PHE LYS GLY SER TRP VAL ASN LYS PHE PRO VAL SEQRES 23 B 480 GLU MET THR HIS ASN HIS ASN PHE ARG LEU ASN GLU ARG SEQRES 24 B 480 GLU VAL VAL LYS VAL SER MET MET GLN THR LYS GLY ASN SEQRES 25 B 480 PHE LEU ALA ALA ASN ASP GLN GLU LEU ASP CYS ASP ILE SEQRES 26 B 480 LEU GLN LEU GLU TYR VAL GLY GLY ILE SER MET LEU ILE SEQRES 27 B 480 VAL VAL PRO HIS LYS MET SER GLY MET LYS THR LEU GLU SEQRES 28 B 480 ALA GLN LEU THR PRO ARG VAL VAL GLU ARG TRP GLN LYS SEQRES 29 B 480 SER MET THR ASN ARG THR ARG GLU VAL LEU LEU PRO LYS SEQRES 30 B 480 PHE LYS LEU GLU LYS ASN TYR ASN LEU VAL GLU SER LEU SEQRES 31 B 480 LYS LEU MET GLY ILE ARG MET LEU PHE ASP LYS ASN GLY SEQRES 32 B 480 ASN MET ALA GLY ILE SER ASP GLN ARG ILE ALA ILE ASP SEQRES 33 B 480 LEU PHE LYS HIS GLN GLY THR ILE THR VAL ASN GLU GLU SEQRES 34 B 480 GLY THR GLN ALA THR THR VAL THR THR VAL GLY PHE MET SEQRES 35 B 480 PRO LEU SER THR GLN VAL ARG PHE THR VAL ASP ARG PRO SEQRES 36 B 480 PHE LEU PHE LEU ILE TYR GLU HIS ARG THR SER CYS LEU SEQRES 37 B 480 LEU PHE MET GLY ARG VAL ALA ASN PRO SER ARG SER MODRES 1JMJ ASN A 368 ASN GLYCOSYLATION SITE MODRES 1JMJ ASN B 368 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET CA A 501 1 HET NAG B 481 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 4 CA CA 2+ FORMUL 6 HOH *297(H2 O) HELIX 1 1 ASP A 62 SER A 68 1 7 HELIX 2 2 SER A 102 ASP A 124 1 23 HELIX 3 3 ALA A 135 SER A 147 1 13 HELIX 4 4 LEU A 148 LEU A 150 5 3 HELIX 5 5 LYS A 151 LEU A 162 1 12 HELIX 6 6 HIS A 163 SER A 171 1 9 HELIX 7 7 GLU A 175 ARG A 192 1 18 HELIX 8 8 LEU A 214 TYR A 225 1 12 HELIX 9 9 ASP A 236 THR A 251 1 16 HELIX 10 10 PRO A 285 THR A 289 5 5 HELIX 11 11 SER A 345 LEU A 354 1 10 HELIX 12 12 THR A 355 SER A 365 1 11 HELIX 13 13 LEU A 386 GLY A 394 1 9 HELIX 14 14 ARG A 396 ASP A 400 5 5 HELIX 15 15 SER B 102 ASP B 124 1 23 HELIX 16 16 ALA B 135 LEU B 148 1 14 HELIX 17 17 LYS B 151 LEU B 162 1 12 HELIX 18 18 HIS B 163 ASN B 169 1 7 HELIX 19 19 GLU B 175 ARG B 192 1 18 HELIX 20 20 LEU B 214 PHE B 226 1 13 HELIX 21 21 ASP B 236 THR B 251 1 16 HELIX 22 22 PRO B 285 THR B 289 5 5 HELIX 23 23 SER B 345 LEU B 354 1 10 HELIX 24 24 THR B 355 SER B 365 1 11 HELIX 25 25 LEU B 386 GLY B 394 1 9 HELIX 26 26 ARG B 396 ASP B 400 5 5 SHEET 1 A 4 ARG A 449 THR A 451 0 SHEET 2 A 4 THR A 367 PRO A 376 1 O GLU A 372 N PHE A 450 SHEET 3 A 4 VAL A 301 ASP A 318 -1 N MET A 307 O LEU A 375 SHEET 4 A 4 HIS A 290 ARG A 295 -1 O HIS A 290 N MET A 306 SHEET 1 B 8 ARG A 449 THR A 451 0 SHEET 2 B 8 THR A 367 PRO A 376 1 O GLU A 372 N PHE A 450 SHEET 3 B 8 VAL A 301 ASP A 318 -1 N MET A 307 O LEU A 375 SHEET 4 B 8 CYS A 323 TYR A 330 -1 O CYS A 323 N ASP A 318 SHEET 5 B 8 ILE A 334 PRO A 341 -1 O ILE A 334 N TYR A 330 SHEET 6 B 8 PHE A 456 GLU A 462 -1 O LEU A 457 N VAL A 339 SHEET 7 B 8 CYS A 467 VAL A 474 -1 O CYS A 467 N GLU A 462 SHEET 8 B 8 ILE A 132 ILE A 134 -1 N ILE A 132 O ARG A 473 SHEET 1 C 5 ALA A 229 ALA A 232 0 SHEET 2 C 5 THR A 198 GLN A 208 1 O LEU A 205 N GLN A 230 SHEET 3 C 5 MET A 268 LYS A 277 -1 O MET A 269 N TYR A 206 SHEET 4 C 5 ILE A 415 VAL A 426 1 N ASP A 416 O MET A 268 SHEET 5 C 5 PHE A 378 GLU A 381 -1 O PHE A 378 N VAL A 426 SHEET 1 D 5 ALA A 229 ALA A 232 0 SHEET 2 D 5 THR A 198 GLN A 208 1 O LEU A 205 N GLN A 230 SHEET 3 D 5 MET A 268 LYS A 277 -1 O MET A 269 N TYR A 206 SHEET 4 D 5 ILE A 415 VAL A 426 1 N ASP A 416 O MET A 268 SHEET 5 D 5 TYR A 384 ASN A 385 -1 N TYR A 384 O HIS A 420 SHEET 1 E 4 ARG B 449 THR B 451 0 SHEET 2 E 4 THR B 367 PRO B 376 1 O GLU B 372 N PHE B 450 SHEET 3 E 4 VAL B 301 ASP B 318 -1 N MET B 307 O LEU B 375 SHEET 4 E 4 HIS B 290 ARG B 295 -1 O HIS B 290 N MET B 306 SHEET 1 F 8 ARG B 449 THR B 451 0 SHEET 2 F 8 THR B 367 PRO B 376 1 O GLU B 372 N PHE B 450 SHEET 3 F 8 VAL B 301 ASP B 318 -1 N MET B 307 O LEU B 375 SHEET 4 F 8 CYS B 323 TYR B 330 -1 O CYS B 323 N ASP B 318 SHEET 5 F 8 ILE B 334 PRO B 341 -1 O ILE B 334 N TYR B 330 SHEET 6 F 8 PHE B 456 GLU B 462 -1 O LEU B 457 N VAL B 339 SHEET 7 F 8 CYS B 467 VAL B 474 -1 O CYS B 467 N GLU B 462 SHEET 8 F 8 ILE B 132 ILE B 134 -1 N ILE B 132 O ARG B 473 SHEET 1 G 5 ALA B 229 ALA B 232 0 SHEET 2 G 5 THR B 198 GLN B 208 1 O LEU B 205 N GLN B 230 SHEET 3 G 5 MET B 268 LYS B 277 -1 O MET B 269 N TYR B 206 SHEET 4 G 5 ILE B 415 VAL B 426 1 N ASP B 416 O MET B 268 SHEET 5 G 5 PHE B 378 GLU B 381 -1 O PHE B 378 N VAL B 426 SHEET 1 H 5 ALA B 229 ALA B 232 0 SHEET 2 H 5 THR B 198 GLN B 208 1 O LEU B 205 N GLN B 230 SHEET 3 H 5 MET B 268 LYS B 277 -1 O MET B 269 N TYR B 206 SHEET 4 H 5 ILE B 415 VAL B 426 1 N ASP B 416 O MET B 268 SHEET 5 H 5 TYR B 384 ASN B 385 -1 N TYR B 384 O HIS B 420 LINK ND2 ASN A 368 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN B 368 C1 NAG B 481 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.39 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.39 LINK NE2 HIS A 290 CA CA A 501 1555 1555 2.55 LINK ND1 HIS A 292 CA CA A 501 1555 1555 2.67 LINK CA CA A 501 O HOH A 502 1555 1555 3.10 LINK CA CA A 501 O HOH A 551 1555 1555 2.84 LINK CA CA A 501 O HOH A 631 1555 1555 2.65 CRYST1 74.730 80.000 92.240 90.00 102.04 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013382 0.000000 0.002854 0.00000 SCALE2 0.000000 0.012500 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011085 0.00000