data_1JOX # _entry.id 1JOX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1JOX pdb_00001jox 10.2210/pdb1jox/pdb RCSB RCSB014016 ? ? WWPDB D_1000014016 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1JP0 _pdbx_database_related.details 'NMR structure of the LP5.1 hairpin from Bacillus RNase P RNA refined WITHOUT residual dipolar couplings.' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1JOX _pdbx_database_status.recvd_initial_deposition_date 2001-07-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Leeper, T.C.' 1 'Schmidt, F.J.' 2 'Van Doren, S.R.' 3 # _citation.id primary _citation.title 'Structure of the UGAGAU hexaloop that braces Bacillus RNase P for action.' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 9 _citation.page_first 397 _citation.page_last 403 _citation.year 2002 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11927952 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Leeper, T.C.' 1 ? primary 'Martin, M.B.' 2 ? primary 'Kim, H.' 3 ? primary 'Cox, S.' 4 ? primary 'Semenchenko, V.' 5 ? primary 'Schmidt, F.J.' 6 ? primary 'Van Doren, S.R.' 7 ? # _cell.entry_id 1JOX _cell.length_a ? _cell.length_b ? _cell.length_c ? _cell.angle_alpha ? _cell.angle_beta ? _cell.angle_gamma ? _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-R(*GP*GP*CP*GP*GP*UP*GP*CP*UP*GP*AP*GP*AP*UP*GP*CP*CP*CP*GP*UP*C)-3'" _entity.formula_weight 6776.060 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'PL5.1 HAIRPIN FROM RNASE P RNA' # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCGGUGCUGAGAUGCCCGUC _entity_poly.pdbx_seq_one_letter_code_can GGCGGUGCUGAGAUGCCCGUC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 G n 1 5 G n 1 6 U n 1 7 G n 1 8 C n 1 9 U n 1 10 G n 1 11 A n 1 12 G n 1 13 A n 1 14 U n 1 15 G n 1 16 C n 1 17 C n 1 18 C n 1 19 G n 1 20 U n 1 21 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'IN VITRO TRANSCRIPTION' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1JOX _struct_ref.pdbx_db_accession 1JOX _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1JOX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 21 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1JOX _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 21 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 21 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '13C-separated-NOESY (Mixing times of 200 and 250 ms)' 2 1 1 'NOESY (Mixing times of 80 and 140 ms)' 3 1 1 HCCH-TOCSY 4 1 1 HCCH-COSY 5 1 1 IPAP-HSQC 6 1 1 13C-Hetero-TOCSY # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 ambient 5.5 '20 mM Sodium Phosphate' ? K 2 277 ambient 5.5 '20 mM Sodium Phosphate' ? K 3 298 ambient 5.5 '20 mM Sodium Phosphate' ? K 4 298 ambient 5.5 '20 mM Sodium Phosphate' ? K 5 277 ambient 5.5 '20 mM Sodium Phosphate' ? K 6 298 ambient 5.5 '20 mM Sodium Phosphate' ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1.0 mM PL5.1 hairpin RNA U-15N,13C, 20mM phosphate buffer NA, 100% D2O' '100% D2O' 2 '1.0 mM PL5.1 hairpin RNA U-15N,13C, 20mM phosphate buffer NA, 8% H2O 92% D2O' '8% H2O 92% D2O' 3 '2.5 mM PL5.1 hairpin RNA U-15N,13C U and A residues only, 20mM phosphate buffer NA, 100% D2O' '100% D2O' 4 '1.8 mM PL5.1 hairpin RNA U-15N,13C A, C, and G residues only, 20mM phosphate buffer NA, 100% D2O' '100% D2O' 5 '1.8 mM PL5.1 hairpin RNA U-15N,13C A, C, and G residues only, 20mM phosphate buffer NA, 8% H2O 92% D2O' '8% H2O 92% D2O' 6 ;1.8 mM PL5.1 hairpin RNA U-15N,13C A, C, and G residues only, 20mM phosphate buffer NA, 100% D2O with 5% PEG/Hexanol for orientation ; '100% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Bruker DRX 500 2 ? Varian INOVA 600 # _pdbx_nmr_refine.entry_id 1JOX _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details 'residual dipolar coupling refinement' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1JOX _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 24 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1JOX _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal CNS 1.0 refinement 'Brunger et. al' 1 CNS 1.0 'structure solution' 'Brunger et. al' 2 # _exptl.entry_id 1JOX _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1JOX _struct.title 'NMR Structure of the LP5.1 Hairpin from Bacillus RNase P RNA Refined with Residual Dipolar Couplings' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1JOX _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RIBONUCLEIC ACID, RNASE P, HAIRPIN, RESIDUAL DIPOLAR COUPLING REFINEMENT, UGNRAU, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 21 N3 ? ? A G 1 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 21 O2 ? ? A G 1 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 21 N4 ? ? A G 1 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A U 20 O2 ? ? A G 2 A U 20 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A U 20 N3 ? ? A G 2 A U 20 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 3 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 3 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 3 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 4 A C 17 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 18 N3 ? ? A G 4 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 18 O2 ? ? A G 4 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 18 N4 ? ? A G 4 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 17 N3 ? ? A G 5 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 17 O2 ? ? A G 5 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 5 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 18 O2 ? ? A G 5 A C 18 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog17 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 16 O2 ? ? A G 7 A C 16 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog18 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 15 N1 ? ? A C 8 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 15 O6 ? ? A C 8 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 15 N2 ? ? A C 8 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1JOX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1JOX _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 C 8 8 8 C C A . n A 1 9 U 9 9 9 U U A . n A 1 10 G 10 10 10 G G A . n A 1 11 A 11 11 11 A A A . n A 1 12 G 12 12 12 G G A . n A 1 13 A 13 13 13 A A A . n A 1 14 U 14 14 14 U U A . n A 1 15 G 15 15 15 G G A . n A 1 16 C 16 16 16 C C A . n A 1 17 C 17 17 17 C C A . n A 1 18 C 18 18 18 C C A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 C 21 21 21 C C A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-05-01 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.43 2 1 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.44 3 1 "HO2'" A C 8 ? ? "O5'" A U 9 ? ? 1.47 4 1 H21 A G 4 ? ? O2 A C 18 ? ? 1.48 5 1 "O2'" A G 12 ? ? "H2'" A A 13 ? ? 1.52 6 1 H21 A G 1 ? ? O2 A C 21 ? ? 1.56 7 1 O6 A G 5 ? ? H41 A C 17 ? ? 1.57 8 1 "H4'" A G 5 ? ? "O5'" A U 6 ? ? 1.57 9 1 "HO2'" A G 1 ? ? "O5'" A G 2 ? ? 1.58 10 2 "HO2'" A G 12 ? ? "O5'" A A 13 ? ? 1.30 11 2 "O2'" A U 9 ? ? "HO2'" A A 13 ? ? 1.39 12 2 H21 A G 4 ? ? O2 A C 18 ? ? 1.49 13 2 N7 A A 11 ? ? "H5''" A A 13 ? ? 1.52 14 2 O2 A C 8 ? ? H21 A G 15 ? ? 1.55 15 2 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.56 16 2 H21 A G 1 ? ? O2 A C 21 ? ? 1.59 17 3 "HO2'" A G 4 ? ? "O5'" A G 5 ? ? 1.20 18 3 "HO2'" A G 12 ? ? "O5'" A A 13 ? ? 1.34 19 3 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.45 20 3 "HO2'" A C 8 ? ? "O5'" A U 9 ? ? 1.51 21 3 "HO2'" A G 10 ? ? "O5'" A A 11 ? ? 1.51 22 3 H21 A G 4 ? ? O2 A C 18 ? ? 1.52 23 3 O2 A C 8 ? ? H21 A G 15 ? ? 1.53 24 3 H21 A G 1 ? ? O2 A C 21 ? ? 1.57 25 3 N7 A A 11 ? ? "H5''" A A 13 ? ? 1.59 26 4 "HO2'" A G 12 ? ? "O5'" A A 13 ? ? 1.21 27 4 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.43 28 4 H21 A G 4 ? ? O2 A C 18 ? ? 1.51 29 4 O2 A C 3 ? ? H21 A G 19 ? ? 1.51 30 4 "H2'" A U 20 ? ? "O4'" A C 21 ? ? 1.52 31 4 N7 A A 11 ? ? "H5''" A A 13 ? ? 1.54 32 4 O2 A C 8 ? ? H21 A G 15 ? ? 1.55 33 4 "HO2'" A G 1 ? ? "O5'" A G 2 ? ? 1.56 34 4 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.59 35 5 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.45 36 5 H21 A G 4 ? ? O2 A C 18 ? ? 1.50 37 5 O2 A C 8 ? ? H21 A G 15 ? ? 1.57 38 5 H21 A G 1 ? ? O2 A C 21 ? ? 1.59 39 6 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.47 40 6 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.52 41 6 H21 A G 4 ? ? O2 A C 18 ? ? 1.52 42 6 "HO2'" A C 8 ? ? "O5'" A U 9 ? ? 1.53 43 6 "HO2'" A G 12 ? ? "O5'" A A 13 ? ? 1.53 44 6 O6 A G 5 ? ? H41 A C 17 ? ? 1.55 45 6 H21 A G 1 ? ? O2 A C 21 ? ? 1.59 46 6 "O2'" A G 5 ? ? H8 A G 7 ? ? 1.60 47 7 "HO2'" A G 12 ? ? "O5'" A A 13 ? ? 1.33 48 7 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.41 49 7 "HO2'" A C 8 ? ? "O5'" A U 9 ? ? 1.50 50 7 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.51 51 7 H21 A G 4 ? ? O2 A C 18 ? ? 1.51 52 7 H21 A G 1 ? ? O2 A C 21 ? ? 1.55 53 7 "O2'" A G 7 ? ? "H5'" A C 8 ? ? 1.57 54 7 O6 A G 5 ? ? H41 A C 17 ? ? 1.60 55 8 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.43 56 8 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.45 57 8 "HO2'" A C 8 ? ? "O5'" A U 9 ? ? 1.48 58 8 H21 A G 4 ? ? O2 A C 18 ? ? 1.51 59 8 "O2'" A G 12 ? ? "H2'" A A 13 ? ? 1.53 60 8 H21 A G 1 ? ? O2 A C 21 ? ? 1.57 61 8 O6 A G 5 ? ? H41 A C 17 ? ? 1.59 62 9 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.47 63 9 H21 A G 4 ? ? O2 A C 18 ? ? 1.48 64 9 "O2'" A G 5 ? ? "H5'" A G 7 ? ? 1.50 65 9 H21 A G 1 ? ? O2 A C 21 ? ? 1.57 66 9 "HO2'" A C 8 ? ? "O5'" A U 9 ? ? 1.58 67 9 "HO2'" A G 1 ? ? "O5'" A G 2 ? ? 1.60 68 10 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.46 69 10 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.47 70 10 "O4'" A G 5 ? ? H6 A U 6 ? ? 1.48 71 10 H21 A G 4 ? ? O2 A C 18 ? ? 1.49 72 10 H22 A G 4 ? ? O4 A U 6 ? ? 1.50 73 10 "HO2'" A G 12 ? ? "O5'" A A 13 ? ? 1.55 74 10 "O2'" A G 5 ? ? "H5''" A G 7 ? ? 1.58 75 11 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.44 76 11 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.49 77 11 "H2'" A U 20 ? ? "O4'" A C 21 ? ? 1.52 78 11 H21 A G 4 ? ? O2 A C 18 ? ? 1.52 79 11 O2 A C 3 ? ? H21 A G 19 ? ? 1.53 80 11 "HO2'" A G 12 ? ? "O5'" A A 13 ? ? 1.53 81 11 O2 A C 8 ? ? H21 A G 15 ? ? 1.56 82 11 H21 A G 1 ? ? O2 A C 21 ? ? 1.58 83 12 "HO2'" A C 8 ? ? "O5'" A U 9 ? ? 1.47 84 12 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.48 85 12 "HO2'" A G 12 ? ? "O5'" A A 13 ? ? 1.50 86 12 H21 A G 4 ? ? O2 A C 18 ? ? 1.51 87 12 O2 A C 3 ? ? H21 A G 19 ? ? 1.54 88 12 O6 A G 5 ? ? H41 A C 17 ? ? 1.55 89 12 "HO2'" A U 9 ? ? O4 A U 14 ? ? 1.57 90 12 H41 A C 8 ? ? O6 A G 15 ? ? 1.60 91 12 "HO2'" A G 1 ? ? "O5'" A G 2 ? ? 1.60 92 12 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.60 93 13 "HO2'" A G 12 ? ? "O5'" A A 13 ? ? 1.28 94 13 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.45 95 13 "HO2'" A C 8 ? ? "O5'" A U 9 ? ? 1.51 96 13 H21 A G 4 ? ? O2 A C 18 ? ? 1.52 97 13 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.54 98 13 O2 A C 3 ? ? H21 A G 19 ? ? 1.57 99 13 O6 A G 5 ? ? H41 A C 17 ? ? 1.57 100 13 "HO2'" A G 1 ? ? "O5'" A G 2 ? ? 1.58 101 14 "HO2'" A G 12 ? ? "O5'" A A 13 ? ? 1.41 102 14 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.41 103 14 H21 A G 4 ? ? O2 A C 18 ? ? 1.48 104 14 "HO2'" A C 8 ? ? "O5'" A U 9 ? ? 1.49 105 14 O2 A C 3 ? ? H21 A G 19 ? ? 1.56 106 14 O6 A G 5 ? ? H41 A C 17 ? ? 1.57 107 14 H21 A G 1 ? ? O2 A C 21 ? ? 1.57 108 15 "HO2'" A G 12 ? ? "O5'" A A 13 ? ? 1.33 109 15 H21 A G 4 ? ? O2 A C 18 ? ? 1.52 110 15 O6 A G 5 ? ? H41 A C 17 ? ? 1.57 111 15 H21 A G 1 ? ? O2 A C 21 ? ? 1.60 112 16 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.33 113 16 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.34 114 16 H21 A G 4 ? ? O2 A C 18 ? ? 1.49 115 16 H21 A G 1 ? ? O2 A C 21 ? ? 1.58 116 16 O2 A C 8 ? ? H21 A G 15 ? ? 1.60 117 17 "O5'" A G 10 ? ? "HO2'" A A 13 ? ? 1.48 118 17 H21 A G 4 ? ? O2 A C 18 ? ? 1.52 119 17 O2 A C 3 ? ? H21 A G 19 ? ? 1.52 120 17 "HO2'" A G 12 ? ? "O5'" A A 13 ? ? 1.54 121 17 O2 A C 8 ? ? H21 A G 15 ? ? 1.54 122 17 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.56 123 17 H21 A G 1 ? ? O2 A C 21 ? ? 1.57 124 18 "O2'" A G 5 ? ? "H5'" A G 7 ? ? 1.44 125 18 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.47 126 18 H21 A G 4 ? ? O2 A C 18 ? ? 1.51 127 18 "HO2'" A C 8 ? ? "O5'" A U 9 ? ? 1.52 128 18 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.57 129 18 H21 A G 1 ? ? O2 A C 21 ? ? 1.57 130 19 "HO2'" A G 12 ? ? "O5'" A A 13 ? ? 1.26 131 19 H21 A G 4 ? ? O2 A C 18 ? ? 1.46 132 19 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.50 133 19 "O2'" A G 1 ? ? "H5''" A G 2 ? ? 1.53 134 19 "H2'" A U 20 ? ? "O4'" A C 21 ? ? 1.53 135 19 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.54 136 19 H21 A G 1 ? ? O2 A C 21 ? ? 1.55 137 19 O2 A C 3 ? ? H21 A G 19 ? ? 1.56 138 20 H21 A G 4 ? ? O2 A C 18 ? ? 1.51 139 20 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.54 140 20 O2 A C 8 ? ? H21 A G 15 ? ? 1.56 141 20 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.58 142 20 H21 A G 1 ? ? O2 A C 21 ? ? 1.59 143 21 H21 A G 4 ? ? O2 A C 18 ? ? 1.48 144 21 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.49 145 21 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.53 146 21 H21 A G 1 ? ? O2 A C 21 ? ? 1.58 147 21 O2 A C 8 ? ? H21 A G 15 ? ? 1.60 148 22 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.45 149 22 "HO2'" A C 8 ? ? "O5'" A U 9 ? ? 1.49 150 22 H21 A G 4 ? ? O2 A C 18 ? ? 1.50 151 22 "HO2'" A U 6 ? ? "O5'" A G 7 ? ? 1.52 152 22 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.55 153 22 O6 A G 5 ? ? H41 A C 17 ? ? 1.55 154 22 H21 A G 1 ? ? O2 A C 21 ? ? 1.57 155 23 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.37 156 23 "O2'" A G 5 ? ? "H5'" A G 7 ? ? 1.40 157 23 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.47 158 23 H21 A G 4 ? ? O2 A C 18 ? ? 1.50 159 23 H21 A G 1 ? ? O2 A C 21 ? ? 1.57 160 24 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.43 161 24 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.46 162 24 "H4'" A G 5 ? ? "O5'" A U 6 ? ? 1.52 163 24 "HO2'" A G 12 ? ? "O5'" A A 13 ? ? 1.52 164 24 H21 A G 4 ? ? O2 A C 18 ? ? 1.54 165 24 N7 A A 11 ? ? "H5''" A A 13 ? ? 1.54 166 24 "HO2'" A C 8 ? ? "O5'" A U 9 ? ? 1.56 167 24 H21 A G 1 ? ? O2 A C 21 ? ? 1.57 168 24 O6 A G 5 ? ? H41 A C 17 ? ? 1.58 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" A G 10 ? ? "O4'" A G 10 ? ? "C4'" A G 10 ? ? 105.48 109.70 -4.22 0.70 N 2 1 "C3'" A A 11 ? ? "C2'" A A 11 ? ? "C1'" A A 11 ? ? 96.02 101.30 -5.28 0.70 N 3 1 "O4'" A C 21 ? ? "C4'" A C 21 ? ? "C3'" A C 21 ? ? 96.19 104.00 -7.81 1.00 N 4 2 "C1'" A G 10 ? ? "O4'" A G 10 ? ? "C4'" A G 10 ? ? 104.50 109.70 -5.20 0.70 N 5 2 "C3'" A A 11 ? ? "C2'" A A 11 ? ? "C1'" A A 11 ? ? 96.79 101.30 -4.51 0.70 N 6 2 "O4'" A C 21 ? ? "C4'" A C 21 ? ? "C3'" A C 21 ? ? 95.58 104.00 -8.42 1.00 N 7 3 "C1'" A G 10 ? ? "O4'" A G 10 ? ? "C4'" A G 10 ? ? 105.38 109.70 -4.32 0.70 N 8 3 "C3'" A A 11 ? ? "C2'" A A 11 ? ? "C1'" A A 11 ? ? 96.09 101.30 -5.21 0.70 N 9 3 "O4'" A C 21 ? ? "C4'" A C 21 ? ? "C3'" A C 21 ? ? 96.25 104.00 -7.75 1.00 N 10 4 "C1'" A G 10 ? ? "O4'" A G 10 ? ? "C4'" A G 10 ? ? 104.65 109.70 -5.05 0.70 N 11 4 "C3'" A A 11 ? ? "C2'" A A 11 ? ? "C1'" A A 11 ? ? 96.19 101.30 -5.11 0.70 N 12 5 "C1'" A G 10 ? ? "O4'" A G 10 ? ? "C4'" A G 10 ? ? 105.01 109.70 -4.69 0.70 N 13 5 "C3'" A C 21 ? ? "C2'" A C 21 ? ? "C1'" A C 21 ? ? 96.07 101.30 -5.23 0.70 N 14 6 "C1'" A G 10 ? ? "O4'" A G 10 ? ? "C4'" A G 10 ? ? 104.45 109.70 -5.25 0.70 N 15 6 "C3'" A C 21 ? ? "C2'" A C 21 ? ? "C1'" A C 21 ? ? 96.99 101.30 -4.31 0.70 N 16 7 "C1'" A G 10 ? ? "O4'" A G 10 ? ? "C4'" A G 10 ? ? 105.14 109.70 -4.56 0.70 N 17 7 "C3'" A A 11 ? ? "C2'" A A 11 ? ? "C1'" A A 11 ? ? 96.24 101.30 -5.06 0.70 N 18 7 "O4'" A C 21 ? ? "C4'" A C 21 ? ? "C3'" A C 21 ? ? 95.83 104.00 -8.17 1.00 N 19 8 "C3'" A A 11 ? ? "C2'" A A 11 ? ? "C1'" A A 11 ? ? 96.03 101.30 -5.27 0.70 N 20 8 "O4'" A C 21 ? ? "C4'" A C 21 ? ? "C3'" A C 21 ? ? 95.57 104.00 -8.43 1.00 N 21 9 "C1'" A G 10 ? ? "O4'" A G 10 ? ? "C4'" A G 10 ? ? 105.21 109.70 -4.49 0.70 N 22 9 "O4'" A C 21 ? ? "C4'" A C 21 ? ? "C3'" A C 21 ? ? 95.54 104.00 -8.46 1.00 N 23 10 "C1'" A G 10 ? ? "O4'" A G 10 ? ? "C4'" A G 10 ? ? 104.32 109.70 -5.38 0.70 N 24 10 "C3'" A A 11 ? ? "C2'" A A 11 ? ? "C1'" A A 11 ? ? 96.79 101.30 -4.51 0.70 N 25 10 "O4'" A C 21 ? ? "C4'" A C 21 ? ? "C3'" A C 21 ? ? 95.55 104.00 -8.45 1.00 N 26 11 "C1'" A G 10 ? ? "O4'" A G 10 ? ? "C4'" A G 10 ? ? 104.74 109.70 -4.96 0.70 N 27 11 "C3'" A A 11 ? ? "C2'" A A 11 ? ? "C1'" A A 11 ? ? 97.02 101.30 -4.28 0.70 N 28 12 "C3'" A A 11 ? ? "C2'" A A 11 ? ? "C1'" A A 11 ? ? 96.40 101.30 -4.90 0.70 N 29 12 "C3'" A C 21 ? ? "C2'" A C 21 ? ? "C1'" A C 21 ? ? 96.79 101.30 -4.51 0.70 N 30 13 "C1'" A G 10 ? ? "O4'" A G 10 ? ? "C4'" A G 10 ? ? 105.32 109.70 -4.38 0.70 N 31 13 "C3'" A A 11 ? ? "C2'" A A 11 ? ? "C1'" A A 11 ? ? 96.05 101.30 -5.25 0.70 N 32 13 "O4'" A C 21 ? ? "C4'" A C 21 ? ? "C3'" A C 21 ? ? 95.43 104.00 -8.57 1.00 N 33 14 "C1'" A G 10 ? ? "O4'" A G 10 ? ? "C4'" A G 10 ? ? 105.44 109.70 -4.26 0.70 N 34 14 "C3'" A A 11 ? ? "C2'" A A 11 ? ? "C1'" A A 11 ? ? 95.87 101.30 -5.43 0.70 N 35 14 "O4'" A C 21 ? ? "C4'" A C 21 ? ? "C3'" A C 21 ? ? 95.58 104.00 -8.42 1.00 N 36 15 "C3'" A A 11 ? ? "C2'" A A 11 ? ? "C1'" A A 11 ? ? 96.19 101.30 -5.11 0.70 N 37 15 "O4'" A C 21 ? ? "C4'" A C 21 ? ? "C3'" A C 21 ? ? 95.50 104.00 -8.50 1.00 N 38 16 "C4'" A A 11 ? ? "C3'" A A 11 ? ? "C2'" A A 11 ? ? 96.42 102.60 -6.18 1.00 N 39 16 "C3'" A A 11 ? ? "C2'" A A 11 ? ? "C1'" A A 11 ? ? 96.97 101.30 -4.33 0.70 N 40 16 "O4'" A C 21 ? ? "C4'" A C 21 ? ? "C3'" A C 21 ? ? 96.47 104.00 -7.53 1.00 N 41 17 "C1'" A G 10 ? ? "O4'" A G 10 ? ? "C4'" A G 10 ? ? 104.92 109.70 -4.78 0.70 N 42 17 "O4'" A A 11 ? ? "C1'" A A 11 ? ? N9 A A 11 ? ? 113.02 108.50 4.52 0.70 N 43 17 "O4'" A C 21 ? ? "C4'" A C 21 ? ? "C3'" A C 21 ? ? 96.03 104.00 -7.97 1.00 N 44 18 "C1'" A G 10 ? ? "O4'" A G 10 ? ? "C4'" A G 10 ? ? 105.13 109.70 -4.57 0.70 N 45 18 "C3'" A A 11 ? ? "C2'" A A 11 ? ? "C1'" A A 11 ? ? 96.15 101.30 -5.15 0.70 N 46 18 "O4'" A C 21 ? ? "C4'" A C 21 ? ? "C3'" A C 21 ? ? 95.50 104.00 -8.50 1.00 N 47 19 "C1'" A G 10 ? ? "O4'" A G 10 ? ? "C4'" A G 10 ? ? 105.32 109.70 -4.38 0.70 N 48 19 "C3'" A A 11 ? ? "C2'" A A 11 ? ? "C1'" A A 11 ? ? 96.12 101.30 -5.18 0.70 N 49 20 "C1'" A G 10 ? ? "O4'" A G 10 ? ? "C4'" A G 10 ? ? 104.84 109.70 -4.86 0.70 N 50 20 "O4'" A A 11 ? ? "C1'" A A 11 ? ? N9 A A 11 ? ? 114.00 108.50 5.50 0.70 N 51 20 "O4'" A C 21 ? ? "C4'" A C 21 ? ? "C3'" A C 21 ? ? 95.56 104.00 -8.44 1.00 N 52 21 "C1'" A G 10 ? ? "O4'" A G 10 ? ? "C4'" A G 10 ? ? 104.58 109.70 -5.12 0.70 N 53 21 "O4'" A C 21 ? ? "C4'" A C 21 ? ? "C3'" A C 21 ? ? 96.18 104.00 -7.82 1.00 N 54 22 "C1'" A G 10 ? ? "O4'" A G 10 ? ? "C4'" A G 10 ? ? 105.00 109.70 -4.70 0.70 N 55 22 "C3'" A A 11 ? ? "C2'" A A 11 ? ? "C1'" A A 11 ? ? 96.23 101.30 -5.07 0.70 N 56 22 "O4'" A C 21 ? ? "C4'" A C 21 ? ? "C3'" A C 21 ? ? 95.94 104.00 -8.06 1.00 N 57 23 "C1'" A G 10 ? ? "O4'" A G 10 ? ? "C4'" A G 10 ? ? 105.37 109.70 -4.33 0.70 N 58 23 "O4'" A C 21 ? ? "C4'" A C 21 ? ? "C3'" A C 21 ? ? 95.51 104.00 -8.49 1.00 N 59 24 "C1'" A G 10 ? ? "O4'" A G 10 ? ? "C4'" A G 10 ? ? 105.08 109.70 -4.62 0.70 N 60 24 "O4'" A A 11 ? ? "C1'" A A 11 ? ? N9 A A 11 ? ? 113.13 108.50 4.63 0.70 N 61 24 "O4'" A C 21 ? ? "C4'" A C 21 ? ? "C3'" A C 21 ? ? 95.47 104.00 -8.53 1.00 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 5 ? ? 0.061 'SIDE CHAIN' 2 4 C A 21 ? ? 0.075 'SIDE CHAIN' 3 6 G A 5 ? ? 0.072 'SIDE CHAIN' 4 11 C A 21 ? ? 0.073 'SIDE CHAIN' 5 12 G A 5 ? ? 0.055 'SIDE CHAIN' 6 13 G A 5 ? ? 0.081 'SIDE CHAIN' 7 14 G A 5 ? ? 0.069 'SIDE CHAIN' 8 15 G A 5 ? ? 0.062 'SIDE CHAIN' 9 16 C A 21 ? ? 0.063 'SIDE CHAIN' 10 17 U A 14 ? ? 0.065 'SIDE CHAIN' 11 19 G A 2 ? ? 0.077 'SIDE CHAIN' 12 19 G A 7 ? ? 0.054 'SIDE CHAIN' 13 22 G A 5 ? ? 0.075 'SIDE CHAIN' 14 24 C A 3 ? ? 0.066 'SIDE CHAIN' 15 24 G A 5 ? ? 0.064 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1JOX 'double helix' 1JOX 'a-form double helix' 1JOX 'hairpin loop' 1JOX 'mismatched base pair' 1JOX 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 21 1_555 -0.936 -0.257 -0.065 0.101 -6.466 7.376 1 A_G1:C21_A A 1 ? A 21 ? 19 1 1 A G 2 1_555 A U 20 1_555 -1.090 -0.444 0.351 4.134 -14.591 -16.019 2 A_G2:U20_A A 2 ? A 20 ? 28 ? 1 A C 3 1_555 A G 19 1_555 0.219 -0.042 0.412 3.538 -14.530 4.194 3 A_C3:G19_A A 3 ? A 19 ? 19 1 1 A G 4 1_555 A C 18 1_555 -0.945 -0.415 0.122 -5.888 -7.819 6.798 4 A_G4:C18_A A 4 ? A 18 ? 19 1 1 A G 5 1_555 A C 17 1_555 0.798 -0.290 0.135 13.165 -8.129 -17.043 5 A_G5:C17_A A 5 ? A 17 ? 19 1 1 A G 7 1_555 A C 16 1_555 -0.930 -0.335 0.276 3.379 -7.386 -15.372 6 A_G7:C16_A A 7 ? A 16 ? ? 1 1 A C 8 1_555 A G 15 1_555 -0.364 -0.035 -0.106 -2.187 -2.610 -11.003 7 A_C8:G15_A A 8 ? A 15 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 21 1_555 A G 2 1_555 A U 20 1_555 -1.323 -2.278 2.855 -5.684 -7.607 24.934 -2.913 1.353 3.591 -16.857 12.597 26.655 1 AA_G1G2:U20C21_AA A 1 ? A 21 ? A 2 ? A 20 ? 1 A G 2 1_555 A U 20 1_555 A C 3 1_555 A G 19 1_555 0.395 -1.967 2.932 -1.544 -3.167 34.038 -2.883 -0.895 3.077 -5.392 2.629 34.215 2 AA_G2C3:G19U20_AA A 2 ? A 20 ? A 3 ? A 19 ? 1 A C 3 1_555 A G 19 1_555 A G 4 1_555 A C 18 1_555 -0.197 -2.836 2.372 -2.078 18.517 28.343 -6.307 0.178 0.487 33.615 3.772 33.814 3 AA_C3G4:C18G19_AA A 3 ? A 19 ? A 4 ? A 18 ? 1 A G 4 1_555 A C 18 1_555 A G 5 1_555 A C 17 1_555 -2.521 -0.403 2.416 -1.986 16.765 36.649 -1.987 3.500 2.167 25.093 2.973 40.229 4 AA_G4G5:C17C18_AA A 4 ? A 18 ? A 5 ? A 17 ? 1 A G 5 1_555 A C 17 1_555 A G 7 1_555 A C 16 1_555 -0.520 -1.280 3.112 -19.177 16.125 38.104 -2.987 -0.904 2.409 22.039 26.209 45.347 5 AA_G5G7:C16C17_AA A 5 ? A 17 ? A 7 ? A 16 ? 1 A G 7 1_555 A C 16 1_555 A C 8 1_555 A G 15 1_555 -0.016 -1.630 3.208 -1.421 24.867 26.611 -5.401 -0.133 1.274 43.748 2.500 36.294 6 AA_G7C8:G15C16_AA A 7 ? A 16 ? A 8 ? A 15 ? #