HEADER HYDROLASE/HYDROLASE INHIBITOR 03-AUG-01 1JQ7 TITLE HCMV PROTEASE DIMER-INTERFACE MUTANT, S225Y COMPLEXED TO INHIBITOR TITLE 2 BILC 408 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASSEMBLIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEASE; COMPND 5 EC: 3.4.21.97; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 5; SOURCE 3 ORGANISM_COMMON: HUMAN CYTOMEGALOVIRUS; SOURCE 4 ORGANISM_TAXID: 10359; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HERPESVIRUS, CYTOMEGALOVIRUS, SERINE PROTEASE, DIMERIZATION, ENZYME KEYWDS 2 ACTIVITY REGULATION, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.BATRA,R.KHAYAT,L.TONG REVDAT 6 13-MAR-24 1JQ7 1 COMPND SOURCE REVDAT 5 16-AUG-23 1JQ7 1 REMARK REVDAT 4 27-OCT-21 1JQ7 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1JQ7 1 VERSN REVDAT 2 24-FEB-09 1JQ7 1 VERSN REVDAT 1 12-SEP-01 1JQ7 0 JRNL AUTH R.BATRA,R.KHAYAT,L.TONG JRNL TITL MOLECULAR MECHANISM FOR DIMERIZATION TO REGULATE THE JRNL TITL 2 CATALYTIC ACTIVITY OF HUMAN CYTOMEGALOVIRUS PROTEASE. JRNL REF NAT.STRUCT.BIOL. V. 8 810 2001 JRNL REFN ISSN 1072-8368 JRNL PMID 11524687 JRNL DOI 10.1038/NSB0901-810 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 7.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2061042.990 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.5 REMARK 3 NUMBER OF REFLECTIONS : 10900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.339 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.400 REMARK 3 FREE R VALUE TEST SET COUNT : 809 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1185 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 96 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.037 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3309 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.71000 REMARK 3 B22 (A**2) : 10.71000 REMARK 3 B33 (A**2) : -21.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM SIGMAA (A) : 0.11 REMARK 3 LOW RESOLUTION CUTOFF (A) : 7.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.58 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.890 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.920 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.560 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.150 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.730 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.25 REMARK 3 BSOL : 10.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : C408.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JQ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-01. REMARK 100 THE DEPOSITION ID IS D_1000014059. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10900 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 19.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COMO REMARK 200 STARTING MODEL: PDB ENTRY 2WPO (DIMER) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, HEPES, SODIUM CHLORIDE, REMARK 280 GLYCEROL, SPERMINE TETRAHYDROCHLORIDE, DTT, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.90000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.12500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.12500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.95000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.12500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.12500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 161.85000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.12500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.12500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.95000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.12500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.12500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 161.85000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 107.90000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1001 REMARK 465 THR A 1002 REMARK 465 MET A 1003 REMARK 465 ASP A 1004 REMARK 465 GLU A 1005 REMARK 465 GLN A 1006 REMARK 465 HIS A 1044 REMARK 465 ALA A 1045 REMARK 465 GLN A 1046 REMARK 465 GLY A 1047 REMARK 465 GLN A 1048 REMARK 465 GLY A 1049 REMARK 465 GLN A 1050 REMARK 465 PRO A 1051 REMARK 465 SER A 1052 REMARK 465 LEU A 1053 REMARK 465 ARG A 1136 REMARK 465 ARG A 1137 REMARK 465 CYS A 1138 REMARK 465 ASP A 1139 REMARK 465 ASP A 1140 REMARK 465 VAL A 1141 REMARK 465 GLU A 1142 REMARK 465 GLN A 1143 REMARK 465 ALA A 1144 REMARK 465 THR A 1145 REMARK 465 SER A 1146 REMARK 465 LEU A 1147 REMARK 465 SER A 1148 REMARK 465 GLY A 1149 REMARK 465 SER A 1150 REMARK 465 GLU A 1151 REMARK 465 THR A 1152 REMARK 465 THR A 1153 REMARK 465 GLN A 1200 REMARK 465 ARG A 1201 REMARK 465 CYS A 1202 REMARK 465 GLY A 1203 REMARK 465 SER A 1204 REMARK 465 THR A 1205 REMARK 465 ALA A 1206 REMARK 465 VAL A 1207 REMARK 465 ASP A 1208 REMARK 465 ALA A 1209 REMARK 465 SER A 1210 REMARK 465 GLY A 1211 REMARK 465 MET B 1301 REMARK 465 THR B 1302 REMARK 465 MET B 1303 REMARK 465 ASP B 1304 REMARK 465 GLU B 1305 REMARK 465 GLN B 1306 REMARK 465 HIS B 1344 REMARK 465 ALA B 1345 REMARK 465 GLN B 1346 REMARK 465 GLY B 1347 REMARK 465 GLN B 1348 REMARK 465 GLY B 1349 REMARK 465 GLN B 1350 REMARK 465 PRO B 1351 REMARK 465 SER B 1352 REMARK 465 LEU B 1353 REMARK 465 SER B 1354 REMARK 465 VAL B 1355 REMARK 465 ASP B 1440 REMARK 465 VAL B 1441 REMARK 465 GLU B 1442 REMARK 465 GLN B 1443 REMARK 465 ALA B 1444 REMARK 465 THR B 1445 REMARK 465 SER B 1446 REMARK 465 LEU B 1447 REMARK 465 SER B 1448 REMARK 465 GLY B 1449 REMARK 465 SER B 1450 REMARK 465 GLU B 1451 REMARK 465 ARG B 1501 REMARK 465 CYS B 1502 REMARK 465 GLY B 1503 REMARK 465 SER B 1504 REMARK 465 THR B 1505 REMARK 465 ALA B 1506 REMARK 465 VAL B 1507 REMARK 465 ASP B 1508 REMARK 465 ALA B 1509 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A1029 CG CD OE1 OE2 REMARK 470 GLU A1031 CG CD OE1 OE2 REMARK 470 ARG A1079 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1156 CG CD CE NZ REMARK 470 GLN A1182 CG CD OE1 NE2 REMARK 470 ARG A1250 CG CD NE CZ NH1 NH2 REMARK 470 GLN B1309 CG CD OE1 NE2 REMARK 470 TRP B1499 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B1499 CZ3 CH2 REMARK 470 GLN B1500 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 1078 N ASP A 1080 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A1009 38.00 -84.92 REMARK 500 ALA A1010 -43.12 -133.78 REMARK 500 VAL A1011 42.81 -88.19 REMARK 500 TYR A1023 -71.24 -42.02 REMARK 500 ASP A1024 21.39 -56.10 REMARK 500 PRO A1027 86.77 -60.74 REMARK 500 ASP A1028 -19.81 -46.34 REMARK 500 ALA A1030 -137.61 -61.04 REMARK 500 GLU A1031 -55.55 -18.75 REMARK 500 LEU A1032 -28.83 -31.63 REMARK 500 LEU A1033 137.58 -38.70 REMARK 500 LEU A1034 82.24 -155.62 REMARK 500 ARG A1036 -34.48 -36.73 REMARK 500 VAL A1039 -78.94 -16.44 REMARK 500 VAL A1055 -175.20 -61.83 REMARK 500 ALA A1056 59.41 -111.46 REMARK 500 HIS A1063 -23.99 91.37 REMARK 500 ASP A1065 21.06 -76.79 REMARK 500 ALA A1067 42.32 -143.46 REMARK 500 ALA A1073 -72.31 -9.96 REMARK 500 GLN A1076 101.77 168.64 REMARK 500 ARG A1079 -22.98 -22.52 REMARK 500 CYS A1087 75.04 -154.68 REMARK 500 SER A1090 93.76 -28.80 REMARK 500 PRO A1091 -0.51 -58.82 REMARK 500 SER A1101 -8.83 -56.47 REMARK 500 LYS A1103 69.33 -118.48 REMARK 500 GLU A1105 -12.26 -40.47 REMARK 500 PRO A1111 -155.34 -80.25 REMARK 500 SER A1113 -80.77 6.46 REMARK 500 ASP A1118 88.06 -151.27 REMARK 500 ALA A1129 40.73 -77.55 REMARK 500 SER A1134 105.50 -166.45 REMARK 500 LYS A1156 -74.59 -38.85 REMARK 500 ARG A1166 -130.02 -60.26 REMARK 500 ARG A1167 107.18 -163.01 REMARK 500 PRO A1185 -53.27 -22.21 REMARK 500 ASP A1186 -79.16 -40.96 REMARK 500 LEU A1187 128.28 -13.36 REMARK 500 THR A1188 -156.21 -87.91 REMARK 500 ALA A1190 -72.87 -53.22 REMARK 500 ARG A1196 -2.35 -53.50 REMARK 500 GLN A1198 -71.94 -152.53 REMARK 500 PRO A1213 47.10 -69.12 REMARK 500 ARG A1215 61.47 -103.35 REMARK 500 SER A1216 -159.09 -148.43 REMARK 500 ASP A1217 -170.50 -171.52 REMARK 500 LEU A1229 0.90 -66.38 REMARK 500 GLU A1233 73.34 24.92 REMARK 500 PRO A1236 -73.75 -53.09 REMARK 500 REMARK 500 THIS ENTRY HAS 72 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A1230 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE INHIBITOR 0FP IS COVALENTLY CONNECTED AT CARBON C4 REMARK 600 TO THE ACTIVE SITE SERINES (A 1132 AND B 1432) VIA REMARK 600 HEMIKETAL LINKAGES REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 0FP A 261 REMARK 610 0FP B 561 REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: N-(6-AMINOHEXANOYL)-3-METHYL-L-VALYL-3-METHYL-L- REMARK 630 VALYL-N~1~-[(2S,3S)-3-HYDROXY-4-OXO-4-{[(1R)-1-PHENYLPROPYL]AMINO} REMARK 630 BUTAN-2-YL]-N~4~,N~4~-DIMETHYL-L-ASPARTAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 0FP A 261 REMARK 630 0FP B 561 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: ACA TBG TBG DMH 9AL REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0FP A 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0FP B 561 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WPO RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN CYTOMEGALOVIRUS PROTEASE REMARK 900 RELATED ID: 2WPO RELATED DB: PDB REMARK 900 HUMAN CYTOMEGALOVIRUS PROTEASE COMPLEXED TO PEPTIDOMIMETIC REMARK 900 INHIBITOR BILC821 REMARK 900 RELATED ID: 1JQ6 RELATED DB: PDB REMARK 900 HUMAN CYTOMEGALOVIRUS PROTEASE MUTANT, S225Y DBREF 1JQ7 A 1001 1256 UNP P16753 VP40_HCMVA 1 256 DBREF 1JQ7 B 1301 1556 UNP P16753 VP40_HCMVA 1 256 SEQADV 1JQ7 GLN A 1143 UNP P16753 ALA 143 ENGINEERED MUTATION SEQADV 1JQ7 TYR A 1225 UNP P16753 SER 225 ENGINEERED MUTATION SEQADV 1JQ7 GLN B 1443 UNP P16753 ALA 143 ENGINEERED MUTATION SEQADV 1JQ7 TYR B 1525 UNP P16753 SER 225 ENGINEERED MUTATION SEQRES 1 A 256 MET THR MET ASP GLU GLN GLN SER GLN ALA VAL ALA PRO SEQRES 2 A 256 VAL TYR VAL GLY GLY PHE LEU ALA ARG TYR ASP GLN SER SEQRES 3 A 256 PRO ASP GLU ALA GLU LEU LEU LEU PRO ARG ASP VAL VAL SEQRES 4 A 256 GLU HIS TRP LEU HIS ALA GLN GLY GLN GLY GLN PRO SER SEQRES 5 A 256 LEU SER VAL ALA LEU PRO LEU ASN ILE ASN HIS ASP ASP SEQRES 6 A 256 THR ALA VAL VAL GLY HIS VAL ALA ALA MET GLN SER VAL SEQRES 7 A 256 ARG ASP GLY LEU PHE CYS LEU GLY CYS VAL THR SER PRO SEQRES 8 A 256 ARG PHE LEU GLU ILE VAL ARG ARG ALA SER GLU LYS SER SEQRES 9 A 256 GLU LEU VAL SER ARG GLY PRO VAL SER PRO LEU GLN PRO SEQRES 10 A 256 ASP LYS VAL VAL GLU PHE LEU SER GLY SER TYR ALA GLY SEQRES 11 A 256 LEU SER LEU SER SER ARG ARG CYS ASP ASP VAL GLU GLN SEQRES 12 A 256 ALA THR SER LEU SER GLY SER GLU THR THR PRO PHE LYS SEQRES 13 A 256 HIS VAL ALA LEU CYS SER VAL GLY ARG ARG ARG GLY THR SEQRES 14 A 256 LEU ALA VAL TYR GLY ARG ASP PRO GLU TRP VAL THR GLN SEQRES 15 A 256 ARG PHE PRO ASP LEU THR ALA ALA ASP ARG ASP GLY LEU SEQRES 16 A 256 ARG ALA GLN TRP GLN ARG CYS GLY SER THR ALA VAL ASP SEQRES 17 A 256 ALA SER GLY ASP PRO PHE ARG SER ASP SER TYR GLY LEU SEQRES 18 A 256 LEU GLY ASN TYR VAL ASP ALA LEU TYR ILE ARG GLU ARG SEQRES 19 A 256 LEU PRO LYS LEU ARG TYR ASP LYS GLN LEU VAL GLY VAL SEQRES 20 A 256 THR GLU ARG GLU SER TYR VAL LYS ALA SEQRES 1 B 256 MET THR MET ASP GLU GLN GLN SER GLN ALA VAL ALA PRO SEQRES 2 B 256 VAL TYR VAL GLY GLY PHE LEU ALA ARG TYR ASP GLN SER SEQRES 3 B 256 PRO ASP GLU ALA GLU LEU LEU LEU PRO ARG ASP VAL VAL SEQRES 4 B 256 GLU HIS TRP LEU HIS ALA GLN GLY GLN GLY GLN PRO SER SEQRES 5 B 256 LEU SER VAL ALA LEU PRO LEU ASN ILE ASN HIS ASP ASP SEQRES 6 B 256 THR ALA VAL VAL GLY HIS VAL ALA ALA MET GLN SER VAL SEQRES 7 B 256 ARG ASP GLY LEU PHE CYS LEU GLY CYS VAL THR SER PRO SEQRES 8 B 256 ARG PHE LEU GLU ILE VAL ARG ARG ALA SER GLU LYS SER SEQRES 9 B 256 GLU LEU VAL SER ARG GLY PRO VAL SER PRO LEU GLN PRO SEQRES 10 B 256 ASP LYS VAL VAL GLU PHE LEU SER GLY SER TYR ALA GLY SEQRES 11 B 256 LEU SER LEU SER SER ARG ARG CYS ASP ASP VAL GLU GLN SEQRES 12 B 256 ALA THR SER LEU SER GLY SER GLU THR THR PRO PHE LYS SEQRES 13 B 256 HIS VAL ALA LEU CYS SER VAL GLY ARG ARG ARG GLY THR SEQRES 14 B 256 LEU ALA VAL TYR GLY ARG ASP PRO GLU TRP VAL THR GLN SEQRES 15 B 256 ARG PHE PRO ASP LEU THR ALA ALA ASP ARG ASP GLY LEU SEQRES 16 B 256 ARG ALA GLN TRP GLN ARG CYS GLY SER THR ALA VAL ASP SEQRES 17 B 256 ALA SER GLY ASP PRO PHE ARG SER ASP SER TYR GLY LEU SEQRES 18 B 256 LEU GLY ASN TYR VAL ASP ALA LEU TYR ILE ARG GLU ARG SEQRES 19 B 256 LEU PRO LYS LEU ARG TYR ASP LYS GLN LEU VAL GLY VAL SEQRES 20 B 256 THR GLU ARG GLU SER TYR VAL LYS ALA HET 0FP A 261 43 HET 0FP B 561 43 HETNAM 0FP N-(6-AMINOHEXANOYL)-3-METHYL-L-VALYL-3-METHYL-L-VALYL- HETNAM 2 0FP N~1~-[(2S,3S)-3-HYDROXY-4-OXO-4-{[(1R)-1- HETNAM 3 0FP PHENYLPROPYL]AMINO}BUTAN-2-YL]-N~4~,N~4~-DIMETHYL-L- HETNAM 4 0FP ASPARTAMIDE HETSYN 0FP BILC 408 FORMUL 3 0FP 2(C37 H63 N7 O7) HELIX 1 1 PRO A 1035 LEU A 1043 1 9 HELIX 2 2 ARG A 1092 GLU A 1102 1 11 HELIX 3 3 ASP A 1118 TYR A 1128 1 11 HELIX 4 4 ASP A 1176 GLN A 1182 1 7 HELIX 5 5 ALA A 1189 ARG A 1196 1 8 HELIX 6 6 ASP A 1217 LEU A 1229 1 13 HELIX 7 7 GLU A 1233 VAL A 1245 1 13 HELIX 8 8 THR A 1248 SER A 1252 5 5 HELIX 9 9 GLU B 1329 LEU B 1333 5 5 HELIX 10 10 PRO B 1335 LEU B 1343 1 9 HELIX 11 11 ARG B 1392 LYS B 1403 1 12 HELIX 12 12 GLU B 1405 GLY B 1410 1 6 HELIX 13 13 ASP B 1418 TYR B 1428 1 11 HELIX 14 14 ASP B 1476 GLN B 1482 1 7 HELIX 15 15 THR B 1488 GLN B 1500 1 13 HELIX 16 16 ASP B 1517 TYR B 1530 1 14 HELIX 17 17 GLU B 1533 GLY B 1546 1 14 SHEET 1 A 4 ALA A1074 MET A1075 0 SHEET 2 A 4 PHE A1083 VAL A1088 -1 N LEU A1085 O ALA A1074 SHEET 3 A 4 VAL A1014 PHE A1019 -1 N VAL A1014 O VAL A1088 SHEET 4 A 4 VAL A1172 GLY A1174 -1 O VAL A1172 N GLY A1017 SHEET 1 B 4 VAL A1068 HIS A1071 0 SHEET 2 B 4 PRO A1058 ILE A1061 -1 O LEU A1059 N VAL A1069 SHEET 3 B 4 GLY A1130 SER A1134 0 SHEET 4 B 4 HIS A1157 CYS A1161 -1 N HIS A1157 O SER A1134 SHEET 1 C 7 GLY B1430 SER B1434 0 SHEET 2 C 7 HIS B1457 CYS B1461 -1 O HIS B1457 N SER B1434 SHEET 3 C 7 PRO B1358 ILE B1361 1 O PRO B1358 N VAL B1458 SHEET 4 C 7 VAL B1368 SER B1377 -1 N VAL B1369 O LEU B1359 SHEET 5 C 7 GLY B1381 VAL B1388 -1 N PHE B1383 O GLN B1376 SHEET 6 C 7 VAL B1314 ARG B1322 -1 N VAL B1314 O VAL B1388 SHEET 7 C 7 VAL B1472 GLY B1474 -1 O VAL B1472 N GLY B1317 LINK C4 0FP A 261 OG SER A1132 1555 1555 1.44 LINK C4 0FP B 561 OG SER B1432 1555 1555 1.44 SITE 1 AC1 13 GLU A1031 ASN A1062 HIS A1063 SER A1132 SITE 2 AC1 13 LEU A1133 SER A1134 SER A1135 CYS A1161 SITE 3 AC1 13 VAL A1163 GLY A1164 ARG A1165 ARG A1166 SITE 4 AC1 13 ILE A1231 SITE 1 AC2 13 GLU B1331 ASN B1362 HIS B1363 SER B1432 SITE 2 AC2 13 LEU B1433 SER B1434 SER B1435 ARG B1436 SITE 3 AC2 13 LYS B1456 VAL B1463 GLY B1464 ARG B1465 SITE 4 AC2 13 ILE B1531 CRYST1 74.250 74.250 215.800 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013468 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013468 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004634 0.00000