data_1JTW # _entry.id 1JTW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1JTW pdb_00001jtw 10.2210/pdb1jtw/pdb RCSB RCSB014179 ? ? WWPDB D_1000014179 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1JTW _pdbx_database_status.recvd_initial_deposition_date 2001-08-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kerwood, D.J.' 1 'Cavaluzzi, M.J.' 2 'Borer, P.N.' 3 # _citation.id primary _citation.title 'Structure of SL4 RNA from the HIV-1 packaging signal.' _citation.journal_abbrev Biochemistry _citation.journal_volume 40 _citation.page_first 14518 _citation.page_last 14529 _citation.year 2001 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11724565 _citation.pdbx_database_id_DOI 10.1021/bi0111909 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kerwood, D.J.' 1 ? primary 'Cavaluzzi, M.J.' 2 ? primary 'Borer, P.N.' 3 ? # _cell.entry_id 1JTW _cell.length_a ? _cell.length_b ? _cell.length_c ? _cell.angle_alpha ? _cell.angle_beta ? _cell.angle_gamma ? _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*GP*GP*GP*UP*GP*CP*GP*AP*GP*AP*GP*CP*GP*UP*CP*A)-3'" 5232.183 1 ? ? ? 'HIV-1 packaging signal SL4 hairpin' 2 non-polymer syn 'SODIUM ION' 22.990 15 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGUGCGAGAGCGUCA _entity_poly.pdbx_seq_one_letter_code_can GGGUGCGAGAGCGUCA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 U n 1 5 G n 1 6 C n 1 7 G n 1 8 A n 1 9 G n 1 10 A n 1 11 G n 1 12 C n 1 13 G n 1 14 U n 1 15 C n 1 16 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This sequence occurs in the packaging signal of HIV-1.' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1JTW _struct_ref.pdbx_db_accession 1JTW _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1JTW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 16 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1JTW _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 16 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature ? _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '~0.7mM SL4 concentration in buffer: 25mM NaCl, 5mM NaHPO4 (pH 7.0), 0.1mM EDTA, 0.01% NaN3' _pdbx_nmr_sample_details.solvent_system '99.96% D2O or 90% H2O, 10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Bruker AVANCE 500 2 ? Bruker AVANCE 600 # _pdbx_nmr_refine.entry_id 1JTW _pdbx_nmr_refine.method ? _pdbx_nmr_refine.details ;DYANA structures were further refined with the molecular dynamics and minimization program, AMBER. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1JTW _pdbx_nmr_details.text 'Sodium ions which were distant from the RNA were removed.' # _pdbx_nmr_ensemble.entry_id 1JTW _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 14 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1JTW _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal DYANA 1.5 refinement Wuthrich 1 Amber 5 'structure solution' Kollman 2 # _exptl.entry_id 1JTW _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1JTW _struct.title 'Structure of SL4 RNA from the HIV-1 Packaging Signal' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1JTW _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'hairpin, tandem G-U pairs, GAGA tetraloops, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 2 OP1 ? ? ? 1_555 B NA . NA ? ? A G 2 A NA 17 1_555 ? ? ? ? ? ? ? 2.486 ? ? metalc2 metalc ? ? A G 2 OP2 ? ? ? 1_555 L NA . NA ? ? A G 2 A NA 27 1_555 ? ? ? ? ? ? ? 2.729 ? ? metalc3 metalc ? ? A G 3 O6 ? ? ? 1_555 C NA . NA ? ? A G 3 A NA 18 1_555 ? ? ? ? ? ? ? 2.617 ? ? metalc4 metalc ? ? A G 3 OP1 ? ? ? 1_555 D NA . NA ? ? A G 3 A NA 19 1_555 ? ? ? ? ? ? ? 2.627 ? ? metalc5 metalc ? ? A G 3 OP2 ? ? ? 1_555 L NA . NA ? ? A G 3 A NA 27 1_555 ? ? ? ? ? ? ? 2.621 ? ? metalc6 metalc ? ? A U 4 O4 ? ? ? 1_555 C NA . NA ? ? A U 4 A NA 18 1_555 ? ? ? ? ? ? ? 2.744 ? ? metalc7 metalc ? ? A U 4 OP2 ? ? ? 1_555 D NA . NA ? ? A U 4 A NA 19 1_555 ? ? ? ? ? ? ? 2.536 ? ? metalc8 metalc ? ? A U 4 OP1 ? ? ? 1_555 E NA . NA ? ? A U 4 A NA 20 1_555 ? ? ? ? ? ? ? 2.626 ? ? metalc9 metalc ? ? A U 4 "O5'" ? ? ? 1_555 E NA . NA ? ? A U 4 A NA 20 1_555 ? ? ? ? ? ? ? 2.969 ? ? metalc10 metalc ? ? A G 5 OP2 ? ? ? 1_555 E NA . NA ? ? A G 5 A NA 20 1_555 ? ? ? ? ? ? ? 2.679 ? ? metalc11 metalc ? ? A C 6 OP1 ? ? ? 1_555 H NA . NA ? ? A C 6 A NA 23 1_555 ? ? ? ? ? ? ? 2.497 ? ? metalc12 metalc ? ? A G 7 OP1 ? ? ? 1_555 G NA . NA ? ? A G 7 A NA 22 1_555 ? ? ? ? ? ? ? 2.953 ? ? metalc13 metalc ? ? A G 7 OP2 ? ? ? 1_555 G NA . NA ? ? A G 7 A NA 22 1_555 ? ? ? ? ? ? ? 2.845 ? ? metalc14 metalc ? ? A A 8 OP1 ? ? ? 1_555 G NA . NA ? ? A A 8 A NA 22 1_555 ? ? ? ? ? ? ? 2.696 ? ? metalc15 metalc ? ? A A 8 OP2 ? ? ? 1_555 I NA . NA ? ? A A 8 A NA 24 1_555 ? ? ? ? ? ? ? 2.595 ? ? metalc16 metalc ? ? A G 9 OP2 ? ? ? 1_555 I NA . NA ? ? A G 9 A NA 24 1_555 ? ? ? ? ? ? ? 2.559 ? ? metalc17 metalc ? ? A G 9 OP1 ? ? ? 1_555 J NA . NA ? ? A G 9 A NA 25 1_555 ? ? ? ? ? ? ? 2.853 ? ? metalc18 metalc ? ? A G 9 "O5'" ? ? ? 1_555 J NA . NA ? ? A G 9 A NA 25 1_555 ? ? ? ? ? ? ? 2.943 ? ? metalc19 metalc ? ? A A 10 OP2 ? ? ? 1_555 J NA . NA ? ? A A 10 A NA 25 1_555 ? ? ? ? ? ? ? 2.620 ? ? metalc20 metalc ? ? A G 11 OP1 ? ? ? 1_555 K NA . NA ? ? A G 11 A NA 26 1_555 ? ? ? ? ? ? ? 2.722 ? ? metalc21 metalc ? ? A G 11 OP2 ? ? ? 1_555 K NA . NA ? ? A G 11 A NA 26 1_555 ? ? ? ? ? ? ? 2.613 ? ? metalc22 metalc ? ? A G 11 "O3'" ? ? ? 1_555 N NA . NA ? ? A G 11 A NA 29 1_555 ? ? ? ? ? ? ? 2.619 ? ? metalc23 metalc ? ? A C 12 OP2 ? ? ? 1_555 M NA . NA ? ? A C 12 A NA 28 1_555 ? ? ? ? ? ? ? 2.689 ? ? metalc24 metalc ? ? A C 12 OP1 ? ? ? 1_555 N NA . NA ? ? A C 12 A NA 29 1_555 ? ? ? ? ? ? ? 2.660 ? ? metalc25 metalc ? ? A G 13 O6 ? ? ? 1_555 C NA . NA ? ? A G 13 A NA 18 1_555 ? ? ? ? ? ? ? 2.592 ? ? metalc26 metalc ? ? A G 13 OP2 ? ? ? 1_555 M NA . NA ? ? A G 13 A NA 28 1_555 ? ? ? ? ? ? ? 2.556 ? ? metalc27 metalc ? ? A U 14 O4 ? ? ? 1_555 C NA . NA ? ? A U 14 A NA 18 1_555 ? ? ? ? ? ? ? 2.901 ? ? metalc28 metalc ? ? A U 14 OP1 ? ? ? 1_555 F NA . NA ? ? A U 14 A NA 21 1_555 ? ? ? ? ? ? ? 2.575 ? ? metalc29 metalc ? ? A U 14 OP2 ? ? ? 1_555 O NA . NA ? ? A U 14 A NA 30 1_555 ? ? ? ? ? ? ? 2.664 ? ? metalc30 metalc ? ? A U 14 "O5'" ? ? ? 1_555 O NA . NA ? ? A U 14 A NA 30 1_555 ? ? ? ? ? ? ? 2.990 ? ? metalc31 metalc ? ? A C 15 OP2 ? ? ? 1_555 O NA . NA ? ? A C 15 A NA 30 1_555 ? ? ? ? ? ? ? 2.535 ? ? metalc32 metalc ? ? A C 15 "O5'" ? ? ? 1_555 P NA . NA ? ? A C 15 A NA 31 1_555 ? ? ? ? ? ? ? 2.893 ? ? metalc33 metalc ? ? A A 16 OP2 ? ? ? 1_555 P NA . NA ? ? A A 16 A NA 31 1_555 ? ? ? ? ? ? ? 2.594 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 15 N3 ? ? A G 2 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 15 O2 ? ? A G 2 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 15 N4 ? ? A G 2 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 3 N1 ? ? ? 1_555 A U 14 O2 ? ? A G 3 A U 14 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A G 3 O6 ? ? ? 1_555 A U 14 N3 ? ? A G 3 A U 14 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A U 4 N3 ? ? ? 1_555 A G 13 O6 ? ? A U 4 A G 13 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog7 hydrog ? ? A U 4 O2 ? ? ? 1_555 A G 13 N1 ? ? A U 4 A G 13 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 12 N3 ? ? A G 5 A C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 12 O2 ? ? A G 5 A C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 12 N4 ? ? A G 5 A C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 11 N1 ? ? A C 6 A G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 11 O6 ? ? A C 6 A G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 11 N2 ? ? A C 6 A G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 7 N2 ? ? ? 1_555 A A 10 N7 ? ? A G 7 A A 10 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 17 ? 1 'BINDING SITE FOR RESIDUE NA A 17' AC2 Software A NA 18 ? 4 'BINDING SITE FOR RESIDUE NA A 18' AC3 Software A NA 19 ? 2 'BINDING SITE FOR RESIDUE NA A 19' AC4 Software A NA 20 ? 2 'BINDING SITE FOR RESIDUE NA A 20' AC5 Software A NA 21 ? 2 'BINDING SITE FOR RESIDUE NA A 21' AC6 Software A NA 22 ? 2 'BINDING SITE FOR RESIDUE NA A 22' AC7 Software A NA 23 ? 1 'BINDING SITE FOR RESIDUE NA A 23' AC8 Software A NA 24 ? 3 'BINDING SITE FOR RESIDUE NA A 24' AC9 Software A NA 25 ? 3 'BINDING SITE FOR RESIDUE NA A 25' BC1 Software A NA 26 ? 2 'BINDING SITE FOR RESIDUE NA A 26' BC2 Software A NA 27 ? 2 'BINDING SITE FOR RESIDUE NA A 27' BC3 Software A NA 28 ? 2 'BINDING SITE FOR RESIDUE NA A 28' BC4 Software A NA 29 ? 2 'BINDING SITE FOR RESIDUE NA A 29' BC5 Software A NA 30 ? 2 'BINDING SITE FOR RESIDUE NA A 30' BC6 Software A NA 31 ? 2 'BINDING SITE FOR RESIDUE NA A 31' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 G A 2 ? G A 2 . ? 1_555 ? 2 AC2 4 G A 3 ? G A 3 . ? 1_555 ? 3 AC2 4 U A 4 ? U A 4 . ? 1_555 ? 4 AC2 4 G A 13 ? G A 13 . ? 1_555 ? 5 AC2 4 U A 14 ? U A 14 . ? 1_555 ? 6 AC3 2 G A 3 ? G A 3 . ? 1_555 ? 7 AC3 2 U A 4 ? U A 4 . ? 1_555 ? 8 AC4 2 U A 4 ? U A 4 . ? 1_555 ? 9 AC4 2 G A 5 ? G A 5 . ? 1_555 ? 10 AC5 2 G A 13 ? G A 13 . ? 1_555 ? 11 AC5 2 U A 14 ? U A 14 . ? 1_555 ? 12 AC6 2 G A 7 ? G A 7 . ? 1_555 ? 13 AC6 2 A A 8 ? A A 8 . ? 1_555 ? 14 AC7 1 C A 6 ? C A 6 . ? 1_555 ? 15 AC8 3 G A 7 ? G A 7 . ? 1_555 ? 16 AC8 3 A A 8 ? A A 8 . ? 1_555 ? 17 AC8 3 G A 9 ? G A 9 . ? 1_555 ? 18 AC9 3 G A 7 ? G A 7 . ? 1_555 ? 19 AC9 3 G A 9 ? G A 9 . ? 1_555 ? 20 AC9 3 A A 10 ? A A 10 . ? 1_555 ? 21 BC1 2 A A 10 ? A A 10 . ? 1_555 ? 22 BC1 2 G A 11 ? G A 11 . ? 1_555 ? 23 BC2 2 G A 2 ? G A 2 . ? 1_555 ? 24 BC2 2 G A 3 ? G A 3 . ? 1_555 ? 25 BC3 2 C A 12 ? C A 12 . ? 1_555 ? 26 BC3 2 G A 13 ? G A 13 . ? 1_555 ? 27 BC4 2 G A 11 ? G A 11 . ? 1_555 ? 28 BC4 2 C A 12 ? C A 12 . ? 1_555 ? 29 BC5 2 U A 14 ? U A 14 . ? 1_555 ? 30 BC5 2 C A 15 ? C A 15 . ? 1_555 ? 31 BC6 2 C A 15 ? C A 15 . ? 1_555 ? 32 BC6 2 A A 16 ? A A 16 . ? 1_555 ? # _database_PDB_matrix.entry_id 1JTW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1JTW _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N NA O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 U 4 4 4 U U A . n A 1 5 G 5 5 5 G G A . n A 1 6 C 6 6 6 C C A . n A 1 7 G 7 7 7 G G A . n A 1 8 A 8 8 8 A A A . n A 1 9 G 9 9 9 G G A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 C 12 12 12 C C A . n A 1 13 G 13 13 13 G G A . n A 1 14 U 14 14 14 U U A . n A 1 15 C 15 15 15 C C A . n A 1 16 A 16 16 16 A A A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 17 17 NA NA A . C 2 NA 1 18 18 NA NA A . D 2 NA 1 19 19 NA NA A . E 2 NA 1 20 20 NA NA A . F 2 NA 1 21 21 NA NA A . G 2 NA 1 22 22 NA NA A . H 2 NA 1 23 23 NA NA A . I 2 NA 1 24 24 NA NA A . J 2 NA 1 25 25 NA NA A . K 2 NA 1 26 26 NA NA A . L 2 NA 1 27 27 NA NA A . M 2 NA 1 28 28 NA NA A . N 2 NA 1 29 29 NA NA A . O 2 NA 1 30 30 NA NA A . P 2 NA 1 31 31 NA NA A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A G 2 ? A G 2 ? 1_555 NA ? L NA . ? A NA 27 ? 1_555 OP2 ? A G 3 ? A G 3 ? 1_555 146.7 ? 2 O6 ? A G 3 ? A G 3 ? 1_555 NA ? C NA . ? A NA 18 ? 1_555 O4 ? A U 4 ? A U 4 ? 1_555 76.5 ? 3 O6 ? A G 3 ? A G 3 ? 1_555 NA ? C NA . ? A NA 18 ? 1_555 O6 ? A G 13 ? A G 13 ? 1_555 87.6 ? 4 O4 ? A U 4 ? A U 4 ? 1_555 NA ? C NA . ? A NA 18 ? 1_555 O6 ? A G 13 ? A G 13 ? 1_555 79.2 ? 5 O6 ? A G 3 ? A G 3 ? 1_555 NA ? C NA . ? A NA 18 ? 1_555 O4 ? A U 14 ? A U 14 ? 1_555 79.7 ? 6 O4 ? A U 4 ? A U 4 ? 1_555 NA ? C NA . ? A NA 18 ? 1_555 O4 ? A U 14 ? A U 14 ? 1_555 143.4 ? 7 O6 ? A G 13 ? A G 13 ? 1_555 NA ? C NA . ? A NA 18 ? 1_555 O4 ? A U 14 ? A U 14 ? 1_555 72.3 ? 8 OP1 ? A G 3 ? A G 3 ? 1_555 NA ? D NA . ? A NA 19 ? 1_555 OP2 ? A U 4 ? A U 4 ? 1_555 148.2 ? 9 OP1 ? A U 4 ? A U 4 ? 1_555 NA ? E NA . ? A NA 20 ? 1_555 "O5'" ? A U 4 ? A U 4 ? 1_555 52.6 ? 10 OP1 ? A U 4 ? A U 4 ? 1_555 NA ? E NA . ? A NA 20 ? 1_555 OP2 ? A G 5 ? A G 5 ? 1_555 149.5 ? 11 "O5'" ? A U 4 ? A U 4 ? 1_555 NA ? E NA . ? A NA 20 ? 1_555 OP2 ? A G 5 ? A G 5 ? 1_555 97.1 ? 12 OP1 ? A G 7 ? A G 7 ? 1_555 NA ? G NA . ? A NA 22 ? 1_555 OP2 ? A G 7 ? A G 7 ? 1_555 52.1 ? 13 OP1 ? A G 7 ? A G 7 ? 1_555 NA ? G NA . ? A NA 22 ? 1_555 OP1 ? A A 8 ? A A 8 ? 1_555 134.5 ? 14 OP2 ? A G 7 ? A G 7 ? 1_555 NA ? G NA . ? A NA 22 ? 1_555 OP1 ? A A 8 ? A A 8 ? 1_555 149.8 ? 15 OP2 ? A A 8 ? A A 8 ? 1_555 NA ? I NA . ? A NA 24 ? 1_555 OP2 ? A G 9 ? A G 9 ? 1_555 116.2 ? 16 OP1 ? A G 9 ? A G 9 ? 1_555 NA ? J NA . ? A NA 25 ? 1_555 "O5'" ? A G 9 ? A G 9 ? 1_555 50.8 ? 17 OP1 ? A G 9 ? A G 9 ? 1_555 NA ? J NA . ? A NA 25 ? 1_555 OP2 ? A A 10 ? A A 10 ? 1_555 152.9 ? 18 "O5'" ? A G 9 ? A G 9 ? 1_555 NA ? J NA . ? A NA 25 ? 1_555 OP2 ? A A 10 ? A A 10 ? 1_555 102.3 ? 19 OP1 ? A G 11 ? A G 11 ? 1_555 NA ? K NA . ? A NA 26 ? 1_555 OP2 ? A G 11 ? A G 11 ? 1_555 56.7 ? 20 "O3'" ? A G 11 ? A G 11 ? 1_555 NA ? N NA . ? A NA 29 ? 1_555 OP1 ? A C 12 ? A C 12 ? 1_555 56.3 ? 21 OP2 ? A C 12 ? A C 12 ? 1_555 NA ? M NA . ? A NA 28 ? 1_555 OP2 ? A G 13 ? A G 13 ? 1_555 148.5 ? 22 OP2 ? A U 14 ? A U 14 ? 1_555 NA ? O NA . ? A NA 30 ? 1_555 "O5'" ? A U 14 ? A U 14 ? 1_555 51.8 ? 23 OP2 ? A U 14 ? A U 14 ? 1_555 NA ? O NA . ? A NA 30 ? 1_555 OP2 ? A C 15 ? A C 15 ? 1_555 147.7 ? 24 "O5'" ? A U 14 ? A U 14 ? 1_555 NA ? O NA . ? A NA 30 ? 1_555 OP2 ? A C 15 ? A C 15 ? 1_555 96.6 ? 25 "O5'" ? A C 15 ? A C 15 ? 1_555 NA ? P NA . ? A NA 31 ? 1_555 OP2 ? A A 16 ? A A 16 ? 1_555 102.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-12-12 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' database_2 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_nmr_spectrometer 5 4 'Structure model' pdbx_struct_assembly 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' pdbx_struct_oper_list 8 4 'Structure model' struct_conn 9 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.Cartn_x' 2 4 'Structure model' '_atom_site.Cartn_y' 3 4 'Structure model' '_atom_site.Cartn_z' 4 4 'Structure model' '_atom_site.auth_atom_id' 5 4 'Structure model' '_atom_site.label_atom_id' 6 4 'Structure model' '_database_2.pdbx_DOI' 7 4 'Structure model' '_database_2.pdbx_database_accession' 8 4 'Structure model' '_pdbx_nmr_software.name' 9 4 'Structure model' '_pdbx_nmr_spectrometer.model' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.value' 23 4 'Structure model' '_struct_conn.pdbx_dist_value' 24 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 3 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.49 108.50 4.99 0.70 N 2 5 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 112.87 108.50 4.37 0.70 N 3 6 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.53 108.50 5.03 0.70 N 4 8 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.20 108.50 4.70 0.70 N 5 10 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.41 108.50 4.91 0.70 N 6 10 "O4'" A U 14 ? ? "C1'" A U 14 ? ? N1 A U 14 ? ? 113.27 108.50 4.77 0.70 N 7 11 "O4'" A C 6 ? ? "C1'" A C 6 ? ? N1 A C 6 ? ? 113.17 108.50 4.67 0.70 N 8 12 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.12 108.50 4.62 0.70 N 9 12 "O4'" A U 14 ? ? "C1'" A U 14 ? ? N1 A U 14 ? ? 112.73 108.50 4.23 0.70 N 10 12 "O4'" A C 15 ? ? "C1'" A C 15 ? ? N1 A C 15 ? ? 112.73 108.50 4.23 0.70 N 11 12 "O4'" A A 16 ? ? "C1'" A A 16 ? ? N9 A A 16 ? ? 113.45 108.50 4.95 0.70 N 12 13 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 114.58 108.50 6.08 0.70 N 13 13 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.93 108.50 5.43 0.70 N 14 14 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.67 108.50 5.17 0.70 N 15 14 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 112.78 108.50 4.28 0.70 N 16 14 "O4'" A A 16 ? ? "C1'" A A 16 ? ? N9 A A 16 ? ? 113.00 108.50 4.50 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 7 ? ? 0.073 'SIDE CHAIN' 2 1 G A 11 ? ? 0.056 'SIDE CHAIN' 3 2 G A 7 ? ? 0.095 'SIDE CHAIN' 4 2 C A 15 ? ? 0.063 'SIDE CHAIN' 5 3 G A 7 ? ? 0.071 'SIDE CHAIN' 6 3 G A 9 ? ? 0.050 'SIDE CHAIN' 7 4 G A 1 ? ? 0.057 'SIDE CHAIN' 8 4 G A 7 ? ? 0.115 'SIDE CHAIN' 9 4 C A 15 ? ? 0.065 'SIDE CHAIN' 10 5 G A 7 ? ? 0.079 'SIDE CHAIN' 11 5 G A 9 ? ? 0.067 'SIDE CHAIN' 12 6 G A 5 ? ? 0.069 'SIDE CHAIN' 13 6 G A 7 ? ? 0.049 'SIDE CHAIN' 14 7 G A 2 ? ? 0.051 'SIDE CHAIN' 15 7 G A 7 ? ? 0.086 'SIDE CHAIN' 16 7 G A 11 ? ? 0.064 'SIDE CHAIN' 17 8 G A 5 ? ? 0.054 'SIDE CHAIN' 18 8 G A 7 ? ? 0.082 'SIDE CHAIN' 19 9 G A 5 ? ? 0.060 'SIDE CHAIN' 20 9 G A 7 ? ? 0.081 'SIDE CHAIN' 21 9 G A 11 ? ? 0.064 'SIDE CHAIN' 22 9 C A 15 ? ? 0.080 'SIDE CHAIN' 23 10 G A 2 ? ? 0.064 'SIDE CHAIN' 24 10 G A 7 ? ? 0.115 'SIDE CHAIN' 25 11 G A 2 ? ? 0.057 'SIDE CHAIN' 26 11 U A 4 ? ? 0.064 'SIDE CHAIN' 27 11 G A 7 ? ? 0.056 'SIDE CHAIN' 28 11 C A 15 ? ? 0.094 'SIDE CHAIN' 29 12 G A 7 ? ? 0.077 'SIDE CHAIN' 30 12 A A 16 ? ? 0.069 'SIDE CHAIN' 31 13 G A 2 ? ? 0.058 'SIDE CHAIN' 32 13 G A 7 ? ? 0.083 'SIDE CHAIN' 33 13 G A 11 ? ? 0.070 'SIDE CHAIN' 34 13 C A 15 ? ? 0.085 'SIDE CHAIN' 35 14 G A 5 ? ? 0.076 'SIDE CHAIN' 36 14 G A 9 ? ? 0.059 'SIDE CHAIN' 37 14 A A 16 ? ? 0.086 'SIDE CHAIN' # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 13 "C3'" ? A G 1 ? 'WRONG HAND' . 2 13 "C2'" ? A G 1 ? 'WRONG HAND' . 3 13 "C4'" ? A G 2 ? 'WRONG HAND' . 4 13 "C3'" ? A G 3 ? 'WRONG HAND' . # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1JTW 'double helix' 1JTW 'a-form double helix' 1JTW tetraloop 1JTW 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A C 15 1_555 -0.913 -0.107 -0.961 -32.151 -16.133 2.253 1 A_G2:C15_A A 2 ? A 15 ? 19 1 1 A G 3 1_555 A U 14 1_555 -1.628 -0.180 0.228 -12.564 -6.252 1.659 2 A_G3:U14_A A 3 ? A 14 ? 28 1 1 A U 4 1_555 A G 13 1_555 1.604 -0.325 0.555 -6.356 -8.872 -3.046 3 A_U4:G13_A A 4 ? A 13 ? 28 1 1 A G 5 1_555 A C 12 1_555 -0.145 0.013 -0.141 -2.112 -20.398 0.114 4 A_G5:C12_A A 5 ? A 12 ? 19 1 1 A C 6 1_555 A G 11 1_555 0.967 -0.224 -0.144 2.942 -18.263 -1.132 5 A_C6:G11_A A 6 ? A 11 ? 19 1 1 A G 7 1_555 A A 10 1_555 7.488 -5.208 0.924 38.355 10.668 -31.848 6 A_G7:A10_A A 7 ? A 10 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A C 15 1_555 A G 3 1_555 A U 14 1_555 0.236 -1.682 2.791 -7.880 7.794 21.897 -5.792 -2.405 1.894 19.028 19.239 24.512 1 AA_G2G3:U14C15_AA A 2 ? A 15 ? A 3 ? A 14 ? 1 A G 3 1_555 A U 14 1_555 A U 4 1_555 A G 13 1_555 -0.102 -1.580 3.175 -1.135 9.515 41.244 -3.086 0.035 2.762 13.293 1.586 42.295 2 AA_G3U4:G13U14_AA A 3 ? A 14 ? A 4 ? A 13 ? 1 A U 4 1_555 A G 13 1_555 A G 5 1_555 A C 12 1_555 -0.259 -1.610 2.879 7.247 18.126 23.765 -5.597 1.510 1.244 37.027 -14.804 30.665 3 AA_U4G5:C12G13_AA A 4 ? A 13 ? A 5 ? A 12 ? 1 A G 5 1_555 A C 12 1_555 A C 6 1_555 A G 11 1_555 0.166 -0.718 3.089 0.801 7.113 37.469 -1.933 -0.160 2.912 10.951 -1.233 38.122 4 AA_G5C6:G11C12_AA A 5 ? A 12 ? A 6 ? A 11 ? 1 A C 6 1_555 A G 11 1_555 A G 7 1_555 A A 10 1_555 -3.647 -1.378 2.405 -12.449 1.324 43.414 -1.901 3.771 3.239 1.747 16.426 45.099 5 AA_C6G7:A10G11_AA A 6 ? A 11 ? A 7 ? A 10 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'SODIUM ION' _pdbx_entity_nonpoly.comp_id NA #