data_1KP7 # _entry.id 1KP7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1KP7 pdb_00001kp7 10.2210/pdb1kp7/pdb RCSB RCSB015193 ? ? WWPDB D_1000015193 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1KP7 _pdbx_database_status.recvd_initial_deposition_date 2001-12-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gallego, J.' 1 'Klinck, R.' 2 'Collier, A.J.' 3 'Cole, P.T.' 4 'Harris, S.J.' 5 'Harrison, G.P.' 6 'Aboul-ela, F.' 7 'Walker, S.' 8 'Varani, G.' 9 # _citation.id primary _citation.title 'A conserved RNA structure within the HCV IRES eIF3-binding site.' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 9 _citation.page_first 375 _citation.page_last 380 _citation.year 2002 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11927954 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Collier, A.J.' 1 ? primary 'Gallego, J.' 2 ? primary 'Klinck, R.' 3 ? primary 'Cole, P.T.' 4 ? primary 'Harris, S.J.' 5 ? primary 'Harrison, G.P.' 6 ? primary 'Aboul-Ela, F.' 7 ? primary 'Varani, G.' 8 ? primary 'Walker, S.' 9 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Hepatitis C Virus Internal Ribosome Entry Site Fragment' _entity.formula_weight 9595.754 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'sub-domain IIIb fragment' # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCGCUCAAUGCUCUUCGGAGACGACCGCC _entity_poly.pdbx_seq_one_letter_code_can GGCGCUCAAUGCUCUUCGGAGACGACCGCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 G n 1 5 C n 1 6 U n 1 7 C n 1 8 A n 1 9 A n 1 10 U n 1 11 G n 1 12 C n 1 13 U n 1 14 C n 1 15 U n 1 16 U n 1 17 C n 1 18 G n 1 19 G n 1 20 A n 1 21 G n 1 22 A n 1 23 C n 1 24 G n 1 25 A n 1 26 C n 1 27 C n 1 28 G n 1 29 C n 1 30 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'T7 polymerase RNA synthesis' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1KP7 _struct_ref.pdbx_db_accession 1KP7 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1KP7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 30 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1KP7 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 30 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 30 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY, DQF-COSY, TOCSY, H-P HETCOR' 2 2 1 '3D C-edited NOESY, HCCH COSY, HCP, C-edited H-P HETCOR, C-edited TOCSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6 _pdbx_nmr_exptl_sample_conditions.ionic_strength '10 mM sodium phosphate' _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1.4 mM RNA, 10mM sodium phosphate buffer, 0.1mM EDTA' 'D2O or 90% H2O, 10% D2O' 2 '0.9 mM U-15N,13C RNA, 10mM sodium phosphate buffer, 0.1mM EDTA' 'D2O or 90% H2O, 10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Bruker DMX 600 2 ? Bruker DRX 500 3 ? Bruker AVANCE 800 # _pdbx_nmr_refine.entry_id 1KP7 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1KP7 _pdbx_nmr_ensemble.conformers_calculated_total_number 26 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'energy-minimized average of 26 converged conformers with low energy and low restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal X-PLOR 3.851 'structure solution' 'Brunger, A.T.' 1 X-PLOR 3.851 refinement 'Brunger, A.T.' 2 # _exptl.entry_id 1KP7 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1KP7 _struct.title 'Conserved RNA Structure within the HCV IRES eIF3 Binding Site' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1KP7 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'cytosine mismatch, EIF3, HCV, internal loop, IRES, S-turn, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 1 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 1 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 1 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 2 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 2 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 2 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 3 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 3 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 3 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 27 N3 ? ? A G 4 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 27 O2 ? ? A G 4 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 27 N4 ? ? A G 4 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N3 ? ? ? 1_555 A C 26 N4 ? ? A C 5 A C 26 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 25 N1 ? ? A U 6 A A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 25 N6 ? ? A U 6 A A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 7 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 7 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 7 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 9 N1 ? ? ? 1_555 A C 23 N4 ? ? A A 9 A C 23 1_555 ? ? ? ? ? ? TYPE_26_PAIR ? ? ? hydrog20 hydrog ? ? A A 9 N6 ? ? ? 1_555 A C 23 N3 ? ? A A 9 A C 23 1_555 ? ? ? ? ? ? TYPE_26_PAIR ? ? ? hydrog21 hydrog ? ? A G 11 N1 ? ? ? 1_555 A A 22 N1 ? ? A G 11 A A 22 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog22 hydrog ? ? A G 11 O6 ? ? ? 1_555 A A 22 N6 ? ? A G 11 A A 22 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog23 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 23 O2 ? ? A G 11 A C 23 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog24 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 21 N1 ? ? A C 12 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 21 O6 ? ? A C 12 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 21 N2 ? ? A C 12 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 20 N1 ? ? A U 13 A A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 20 N6 ? ? A U 13 A A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 14 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 14 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 14 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 15 O2 ? ? ? 1_555 A G 18 N1 ? ? A U 15 A G 18 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog33 hydrog ? ? A U 15 O2 ? ? ? 1_555 A G 19 N1 ? ? A U 15 A G 19 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1KP7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1KP7 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 U 6 6 6 U U A . n A 1 7 C 7 7 7 C C A . n A 1 8 A 8 8 8 A A A . n A 1 9 A 9 9 9 A A A . n A 1 10 U 10 10 10 U U A . n A 1 11 G 11 11 11 G G A . n A 1 12 C 12 12 12 C C A . n A 1 13 U 13 13 13 U U A . n A 1 14 C 14 14 14 C C A . n A 1 15 U 15 15 15 U U A . n A 1 16 U 16 16 16 U U A . n A 1 17 C 17 17 17 C C A . n A 1 18 G 18 18 18 G G A . n A 1 19 G 19 19 19 G G A . n A 1 20 A 20 20 20 A A A . n A 1 21 G 21 21 21 G G A . n A 1 22 A 22 22 22 A A A . n A 1 23 C 23 23 23 C C A . n A 1 24 G 24 24 24 G G A . n A 1 25 A 25 25 25 A A A . n A 1 26 C 26 26 26 C C A . n A 1 27 C 27 27 27 C C A . n A 1 28 G 28 28 28 G G A . n A 1 29 C 29 29 29 C C A . n A 1 30 C 30 30 30 C C A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-04-10 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_spectrometer 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.76 113.10 4.66 0.50 N 2 1 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.68 106.40 -2.72 0.40 N 3 1 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.64 113.10 4.54 0.50 N 4 1 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.67 106.40 -2.73 0.40 N 5 1 N7 A G 4 ? ? C8 A G 4 ? ? N9 A G 4 ? ? 117.58 113.10 4.48 0.50 N 6 1 C8 A G 4 ? ? N9 A G 4 ? ? C4 A G 4 ? ? 103.73 106.40 -2.67 0.40 N 7 1 N7 A A 8 ? ? C8 A A 8 ? ? N9 A A 8 ? ? 117.54 113.80 3.74 0.50 N 8 1 N7 A A 9 ? ? C8 A A 9 ? ? N9 A A 9 ? ? 117.55 113.80 3.75 0.50 N 9 1 N7 A G 11 ? ? C8 A G 11 ? ? N9 A G 11 ? ? 117.68 113.10 4.58 0.50 N 10 1 C8 A G 11 ? ? N9 A G 11 ? ? C4 A G 11 ? ? 103.87 106.40 -2.53 0.40 N 11 1 N7 A G 18 ? ? C8 A G 18 ? ? N9 A G 18 ? ? 117.70 113.10 4.60 0.50 N 12 1 C8 A G 18 ? ? N9 A G 18 ? ? C4 A G 18 ? ? 103.64 106.40 -2.76 0.40 N 13 1 N7 A G 19 ? ? C8 A G 19 ? ? N9 A G 19 ? ? 117.78 113.10 4.68 0.50 N 14 1 C8 A G 19 ? ? N9 A G 19 ? ? C4 A G 19 ? ? 103.63 106.40 -2.77 0.40 N 15 1 N7 A A 20 ? ? C8 A A 20 ? ? N9 A A 20 ? ? 117.60 113.80 3.80 0.50 N 16 1 N7 A G 21 ? ? C8 A G 21 ? ? N9 A G 21 ? ? 117.71 113.10 4.61 0.50 N 17 1 C8 A G 21 ? ? N9 A G 21 ? ? C4 A G 21 ? ? 103.67 106.40 -2.73 0.40 N 18 1 N7 A A 22 ? ? C8 A A 22 ? ? N9 A A 22 ? ? 117.54 113.80 3.74 0.50 N 19 1 N7 A G 24 ? ? C8 A G 24 ? ? N9 A G 24 ? ? 117.58 113.10 4.48 0.50 N 20 1 C8 A G 24 ? ? N9 A G 24 ? ? C4 A G 24 ? ? 103.82 106.40 -2.58 0.40 N 21 1 N7 A A 25 ? ? C8 A A 25 ? ? N9 A A 25 ? ? 117.47 113.80 3.67 0.50 N 22 1 N7 A G 28 ? ? C8 A G 28 ? ? N9 A G 28 ? ? 117.77 113.10 4.67 0.50 N 23 1 C8 A G 28 ? ? N9 A G 28 ? ? C4 A G 28 ? ? 103.68 106.40 -2.72 0.40 N # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1KP7 'double helix' 1KP7 'a-form double helix' 1KP7 tetraloop 1KP7 'mismatched base pair' 1KP7 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 30 1_555 -1.251 -0.440 -0.438 -11.040 -5.378 -0.925 1 A_G1:C30_A A 1 ? A 30 ? 19 1 1 A G 2 1_555 A C 29 1_555 -0.669 -0.328 -0.123 -4.599 -5.667 -3.262 2 A_G2:C29_A A 2 ? A 29 ? 19 1 1 A C 3 1_555 A G 28 1_555 0.696 -0.341 -0.422 14.725 -8.266 -3.834 3 A_C3:G28_A A 3 ? A 28 ? 19 1 1 A G 4 1_555 A C 27 1_555 -0.755 -0.217 -0.287 -10.327 -8.976 0.101 4 A_G4:C27_A A 4 ? A 27 ? 19 1 1 A C 5 1_555 A C 26 1_555 1.375 -1.096 -0.471 -7.302 -28.666 -5.363 5 A_C5:C26_A A 5 ? A 26 ? ? ? 1 A U 6 1_555 A A 25 1_555 0.108 -0.139 -0.562 14.545 -15.679 -3.792 6 A_U6:A25_A A 6 ? A 25 ? 20 1 1 A C 7 1_555 A G 24 1_555 0.650 -0.368 -0.853 19.284 -3.372 -3.767 7 A_C7:G24_A A 7 ? A 24 ? 19 1 1 A A 9 1_555 A C 23 1_555 0.131 -0.165 1.038 15.322 25.769 160.709 8 A_A9:C23_A A 9 ? A 23 ? 26 2 1 A G 11 1_555 A A 22 1_555 0.148 1.337 -0.277 -6.499 -13.793 -19.739 9 A_G11:A22_A A 11 ? A 22 ? 8 1 1 A C 12 1_555 A G 21 1_555 0.344 -0.210 0.105 -3.024 -6.711 -4.167 10 A_C12:G21_A A 12 ? A 21 ? 19 1 1 A U 13 1_555 A A 20 1_555 0.206 -0.186 -0.179 1.241 -13.324 -3.531 11 A_U13:A20_A A 13 ? A 20 ? 20 1 1 A C 14 1_555 A G 19 1_555 0.686 -0.342 -0.423 10.704 -4.242 -4.128 12 A_C14:G19_A A 14 ? A 19 ? 19 1 1 A U 15 1_555 A G 18 1_555 1.214 -4.562 -0.098 -10.944 -30.736 -96.728 13 A_U15:G18_A A 15 ? A 18 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 30 1_555 A G 2 1_555 A C 29 1_555 -0.160 -1.552 2.966 -4.004 4.705 31.529 -3.544 -0.339 2.711 8.557 7.281 32.114 1 AA_G1G2:C29C30_AA A 1 ? A 30 ? A 2 ? A 29 ? 1 A G 2 1_555 A C 29 1_555 A C 3 1_555 A G 28 1_555 -0.530 -0.861 2.718 1.986 1.559 40.925 -1.369 0.934 2.657 2.227 -2.838 40.999 2 AA_G2C3:G28C29_AA A 2 ? A 29 ? A 3 ? A 28 ? 1 A C 3 1_555 A G 28 1_555 A G 4 1_555 A C 27 1_555 1.518 -1.844 3.649 0.695 14.089 29.676 -5.692 -2.569 2.567 25.755 -1.271 32.790 3 AA_C3G4:C27G28_AA A 3 ? A 28 ? A 4 ? A 27 ? 1 A G 4 1_555 A C 27 1_555 A C 5 1_555 A C 26 1_555 -1.464 -1.042 3.288 2.798 1.516 41.168 -1.638 2.373 3.148 2.152 -3.972 41.285 4 AA_G4C5:C26C27_AA A 4 ? A 27 ? A 5 ? A 26 ? 1 A C 5 1_555 A C 26 1_555 A U 6 1_555 A A 25 1_555 0.603 -0.890 2.544 2.571 -3.885 29.359 -1.081 -0.742 2.679 -7.604 -5.034 29.718 5 AA_C5U6:A25C26_AA A 5 ? A 26 ? A 6 ? A 25 ? 1 A U 6 1_555 A A 25 1_555 A C 7 1_555 A G 24 1_555 0.403 -1.076 3.273 0.312 -0.132 32.018 -1.926 -0.674 3.280 -0.239 -0.565 32.020 6 AA_U6C7:G24A25_AA A 6 ? A 25 ? A 7 ? A 24 ? 1 A A 9 1_555 A C 23 1_555 A G 11 1_555 A A 22 1_555 2.077 1.881 -2.133 -126.918 120.840 170.530 1.001 -0.975 -2.143 60.426 63.465 179.608 7 AA_A9G11:A22C23_AA A 9 ? A 23 ? A 11 ? A 22 ? 1 A G 11 1_555 A A 22 1_555 A C 12 1_555 A G 21 1_555 0.559 -1.580 3.149 -4.960 -3.751 32.836 -2.142 -1.776 3.189 -6.562 8.677 33.404 8 AA_G11C12:G21A22_AA A 11 ? A 22 ? A 12 ? A 21 ? 1 A C 12 1_555 A G 21 1_555 A U 13 1_555 A A 20 1_555 0.267 -1.389 2.973 2.778 6.600 35.802 -3.018 -0.090 2.695 10.605 -4.463 36.488 9 AA_C12U13:A20G21_AA A 12 ? A 21 ? A 13 ? A 20 ? 1 A U 13 1_555 A A 20 1_555 A C 14 1_555 A G 19 1_555 -0.126 -1.224 3.010 1.688 2.871 34.838 -2.426 0.440 2.894 4.781 -2.811 34.992 10 AA_U13C14:G19A20_AA A 13 ? A 20 ? A 14 ? A 19 ? 1 A C 14 1_555 A G 19 1_555 A U 15 1_555 A G 18 1_555 0.476 -0.911 2.965 10.486 6.665 99.131 -0.691 -0.161 2.944 4.366 -6.869 99.703 11 AA_C14U15:G18G19_AA A 14 ? A 19 ? A 15 ? A 18 ? #