HEADER ISOMERASE 19-FEB-02 1L1P TITLE SOLUTION STRUCTURE OF THE PPIASE DOMAIN FROM E. COLI TRIGGER FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIGGER FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PPIASE DOMAIN; COMPND 5 SYNONYM: TF; COMPND 6 EC: 5.2.1.8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS MIXED BETA-ALPHA STRUCTURE, MONTREAL-KINGSTON BACTERIAL STRUCTURAL KEYWDS 2 GENOMICS INITIATIVE, BSGI, STRUCTURAL GENOMICS, ISOMERASE EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR G.KOZLOV,J.-F.TREMPE,A.PERREAULT,M.WONG,A.DENISOV,S.GHANDI,K.GEHRING, AUTHOR 2 I.EKIEL,MONTREAL-KINGSTON BACTERIAL STRUCTURAL GENOMICS INITIATIVE AUTHOR 3 (BSGI) REVDAT 3 23-FEB-22 1L1P 1 REMARK SEQADV REVDAT 2 24-FEB-09 1L1P 1 VERSN REVDAT 1 24-JUN-03 1L1P 0 JRNL AUTH G.KOZLOV,J.-F.TREMPE,A.PERREAULT,M.WONG,A.DENISOV,S.GHANDI, JRNL AUTH 2 K.GEHRING,I.EKIEL JRNL TITL SOLUTION STRUCTURE OF THE CLOSED FORM OF A PEPTIDYL-PROLYL JRNL TITL 2 ISOMERASE REVEALS THE MECHANISM OF PROTEIN FOLDING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.1, CNS 0.9 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 1710 NOE REMARK 3 -DERIVED RESTRAINTS, 25 HYDROGEN BONDS, 96 DIHEDRAL ANGLE REMARK 3 RESTRAINTS AND 50 N-HN RESIDUAL DIPOLAR COUPLINGS. REMARK 4 REMARK 4 1L1P COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-02. REMARK 100 THE DEPOSITION ID IS D_1000015563. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.1M NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2-3MM PPIASE DOMAIN U-15N; 50MM REMARK 210 PHOSPHATE BUFFER; 0.1M NACL; REMARK 210 0.02% NAN3; 2-3MM PPIASE DOMAIN; REMARK 210 50MM PHOSPHATE BUFFER; 0.1M NACL; REMARK 210 0.02% NAN3; 2-3MM PPIASE DOMAIN; REMARK 210 50MM PHOSPHATE BUFFER; 0.1M REMARK 210 NACL; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; HNHA; REMARK 210 2D_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : GIFA 4.31, XEASY 1.3.13, ARIA REMARK 210 0.9 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING STANDARD HOMONUCLEAR REMARK 210 AND HETERONUCLEAR NMR EXPERIMENTS. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 25 H ALA A 39 1.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 3 -59.96 -153.57 REMARK 500 1 MET A 4 92.92 59.72 REMARK 500 1 LYS A 9 35.15 -147.48 REMARK 500 1 LYS A 11 -152.99 -69.10 REMARK 500 1 ALA A 17 -73.22 -20.65 REMARK 500 1 GLU A 18 71.71 -118.30 REMARK 500 1 VAL A 29 -82.45 -112.87 REMARK 500 1 ASP A 30 39.71 -96.11 REMARK 500 1 PHE A 34 -133.83 -84.01 REMARK 500 1 ASP A 41 70.78 -102.94 REMARK 500 1 MET A 46 92.74 -64.79 REMARK 500 1 GLN A 48 -56.94 -131.01 REMARK 500 1 MET A 51 94.12 -51.49 REMARK 500 1 ASP A 57 -76.83 -80.24 REMARK 500 1 ILE A 59 40.79 -78.45 REMARK 500 1 ALA A 64 97.45 -60.45 REMARK 500 1 PRO A 75 -176.09 -66.95 REMARK 500 1 LYS A 84 136.50 -34.63 REMARK 500 1 LYS A 95 -107.30 -149.79 REMARK 500 1 GLU A 101 82.08 -150.12 REMARK 500 2 HIS A 3 160.82 60.79 REMARK 500 2 LYS A 9 38.50 -147.29 REMARK 500 2 LYS A 11 -156.70 -69.27 REMARK 500 2 ALA A 14 -172.65 -69.53 REMARK 500 2 ALA A 17 -73.26 -20.74 REMARK 500 2 GLU A 18 72.85 -118.08 REMARK 500 2 VAL A 29 -80.70 -100.85 REMARK 500 2 ASP A 30 36.99 -95.38 REMARK 500 2 PHE A 34 -136.38 -82.71 REMARK 500 2 ASP A 41 70.44 -102.80 REMARK 500 2 MET A 46 84.61 -65.51 REMARK 500 2 GLN A 48 -62.84 -122.16 REMARK 500 2 ARG A 50 67.35 176.85 REMARK 500 2 MET A 51 109.32 -48.31 REMARK 500 2 ASP A 57 -74.20 -80.65 REMARK 500 2 ILE A 59 39.72 -75.02 REMARK 500 2 ALA A 64 97.72 -59.88 REMARK 500 2 HIS A 79 75.53 36.66 REMARK 500 2 LYS A 84 127.59 -32.36 REMARK 500 2 LYS A 95 -109.38 -147.69 REMARK 500 2 GLU A 101 100.24 -165.67 REMARK 500 3 LYS A 9 16.03 -140.13 REMARK 500 3 LYS A 11 -150.19 -63.45 REMARK 500 3 ALA A 14 -174.18 -69.20 REMARK 500 3 ALA A 17 -74.44 -20.87 REMARK 500 3 GLU A 18 71.67 -117.99 REMARK 500 3 VAL A 29 -73.37 -111.78 REMARK 500 3 ASP A 30 33.50 -95.63 REMARK 500 3 PHE A 34 -136.01 -82.48 REMARK 500 3 ASP A 41 70.55 -102.94 REMARK 500 REMARK 500 THIS ENTRY HAS 606 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TIG_ECOLI RELATED DB: TARGETDB DBREF 1L1P A 5 106 UNP P0A850 TIG_ECOLI 148 249 SEQADV 1L1P GLY A 1 UNP P0A850 CLONING ARTIFACT SEQADV 1L1P SER A 2 UNP P0A850 CLONING ARTIFACT SEQADV 1L1P HIS A 3 UNP P0A850 CLONING ARTIFACT SEQADV 1L1P MET A 4 UNP P0A850 CLONING ARTIFACT SEQRES 1 A 106 GLY SER HIS MET GLN ALA THR TRP LYS GLU LYS ASP GLY SEQRES 2 A 106 ALA VAL GLU ALA GLU ASP ARG VAL THR ILE ASP PHE THR SEQRES 3 A 106 GLY SER VAL ASP GLY GLU GLU PHE GLU GLY GLY LYS ALA SEQRES 4 A 106 SER ASP PHE VAL LEU ALA MET GLY GLN GLY ARG MET ILE SEQRES 5 A 106 PRO GLY PHE GLU ASP GLY ILE LYS GLY HIS LYS ALA GLY SEQRES 6 A 106 GLU GLU PHE THR ILE ASP VAL THR PHE PRO GLU GLU TYR SEQRES 7 A 106 HIS ALA GLU ASN LEU LYS GLY LYS ALA ALA LYS PHE ALA SEQRES 8 A 106 ILE ASN LEU LYS LYS VAL GLU GLU ARG GLU LEU PRO GLU SEQRES 9 A 106 LEU THR HELIX 1 1 GLY A 54 ILE A 59 1 6 SHEET 1 A 4 LYS A 38 MET A 46 0 SHEET 2 A 4 ASP A 19 THR A 26 -1 N PHE A 25 O ALA A 39 SHEET 3 A 4 ALA A 88 GLU A 98 -1 O ASN A 93 N ASP A 24 SHEET 4 A 4 PHE A 68 VAL A 72 -1 N PHE A 68 O ILE A 92 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1