HEADER CELL ADHESION, METAL BINDING PROTEIN 01-MAR-02 1L3W TITLE C-CADHERIN ECTODOMAIN CAVEAT 1L3W NAG A 805 HAS WRONG CHIRALITY AT ATOM C1 NAG A 806 HAS WRONG CAVEAT 2 1L3W CHIRALITY AT ATOM C1 NAG A 902 HAS WRONG CHIRALITY AT ATOM CAVEAT 3 1L3W C1 NAG A 903 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EP-CADHERIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-CADHERIN ECTODOMAIN; COMPND 5 SYNONYM: C-CADHERIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 EXPRESSION_SYSTEM_TISSUE: SECRETION; SOURCE 9 EXPRESSION_SYSTEM_CELL: CHOKI CELLS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PEE14 KEYWDS CELL ADHESION, CALCIUM BINDING, CADHERIN, EXTRACELLULAR, ECTODOMAIN, KEYWDS 2 METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.J.BOGGON,J.MURRAY,S.CHAPPUIS-FLAMENT,E.WONG,B.M.GUMBINER,L.SHAPIRO REVDAT 7 16-AUG-23 1L3W 1 HETSYN REVDAT 6 29-JUL-20 1L3W 1 CAVEAT COMPND REMARK SEQADV REVDAT 6 2 1 HETNAM LINK SITE ATOM REVDAT 5 16-NOV-11 1L3W 1 HETATM REVDAT 4 13-JUL-11 1L3W 1 VERSN REVDAT 3 24-FEB-09 1L3W 1 VERSN REVDAT 2 01-APR-03 1L3W 1 JRNL REVDAT 1 26-APR-02 1L3W 0 JRNL AUTH T.J.BOGGON,J.MURRAY,S.CHAPPUIS-FLAMENT,E.WONG,B.M.GUMBINER, JRNL AUTH 2 L.SHAPIRO JRNL TITL C-CADHERIN ECTODOMAIN STRUCTURE AND IMPLICATIONS FOR CELL JRNL TITL 2 ADHESION MECHANISMS JRNL REF SCIENCE V. 296 1308 2002 JRNL REFN ISSN 0036-8075 JRNL PMID 11964443 JRNL DOI 10.1126/SCIENCE.1071559 REMARK 2 REMARK 2 RESOLUTION. 3.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.5 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 327028.940 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 69.8 REMARK 3 NUMBER OF REFLECTIONS : 15340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 735 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.08 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.27 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 33.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1158 REMARK 3 BIN R VALUE (WORKING SET) : 0.3510 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 59 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.043 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4032 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 222 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -34.96000 REMARK 3 B22 (A**2) : 21.32000 REMARK 3 B33 (A**2) : 13.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -28.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM SIGMAA (A) : 0.67 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.49 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.59 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 3.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.430 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : GROUP REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.24 REMARK 3 BSOL : 30.49 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : CARBOHYDRATE2.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1L3W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1000015622. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21748 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10900 REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37000 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1EDH, 1FF5, 1NCG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, NA-CACODYLATE, NACL, MNCL2, REMARK 280 CACL2, PH 5.0, VAPOR DIFFUSION, HANGING DROP AT 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.58300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.56750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.58300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.56750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1000 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1031 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1037 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 ARG A 30 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 31 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 32 CG OD1 ND2 REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 ARG A 167 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 210 CD OE1 NE2 REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 GLN A 256 CG CD OE1 NE2 REMARK 470 ILE A 261 CD1 REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 ARG A 338 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 350 CG CD CE NZ REMARK 470 ILE A 364 CG1 CG2 CD1 REMARK 470 ASP A 374 CG OD1 OD2 REMARK 470 ARG A 377 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 383 CG CD CE NZ REMARK 470 ASN A 393 CG OD1 ND2 REMARK 470 ARG A 396 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 402 CG CD CE NZ REMARK 470 ASN A 404 CG OD1 ND2 REMARK 470 ASP A 415 CG OD1 OD2 REMARK 470 GLN A 450 CG CD OE1 NE2 REMARK 470 ILE A 464 CG1 CG2 CD1 REMARK 470 TYR A 469 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 472 CG CD CE NZ REMARK 470 SER A 479 OG REMARK 470 LYS A 484 CG CD CE NZ REMARK 470 GLU A 486 CG CD OE1 OE2 REMARK 470 ASP A 488 CG OD1 OD2 REMARK 470 SER A 489 OG REMARK 470 LYS A 490 CG CD CE NZ REMARK 470 SER A 493 OG REMARK 470 GLN A 500 CG CD OE1 NE2 REMARK 470 LEU A 502 CG CD1 CD2 REMARK 470 LYS A 503 CG CD CE NZ REMARK 470 LYS A 504 CG CD CE NZ REMARK 470 ASP A 506 CG OD1 OD2 REMARK 470 ASN A 519 CG OD1 ND2 REMARK 470 LYS A 538 CG CD CE NZ REMARK 470 GLN A 540 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N LEU A 481 N THR A 482 1.74 REMARK 500 O GLN A 517 N ASN A 519 2.03 REMARK 500 O THR A 227 O5 NAG A 812 2.09 REMARK 500 N ASN A 451 O GLU A 533 2.10 REMARK 500 O VAL A 230 N GLU A 324 2.11 REMARK 500 O VAL A 3 O HOH A 1001 2.16 REMARK 500 OG1 THR A 318 O5 NAG A 806 2.16 REMARK 500 CG ASN A 526 C1 NAG A 904 2.17 REMARK 500 OG1 THR A 423 C2 NAG A 810 2.17 REMARK 500 OG1 THR A 314 O5 NDG A 804 2.17 REMARK 500 CB ALA A 335 O6 NDG A 811 2.18 REMARK 500 ND2 ASN A 526 O5 NAG A 904 2.18 REMARK 500 OD2 ASP A 72 O HOH A 1016 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 223 CG PRO A 223 CD 0.231 REMARK 500 ALA A 335 CA ALA A 335 CB -0.175 REMARK 500 THR A 523 N THR A 523 CA -0.125 REMARK 500 CYS A 539 CB CYS A 539 SG 0.139 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 2 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 PRO A 18 C - N - CD ANGL. DEV. = -25.4 DEGREES REMARK 500 PRO A 18 CA - N - CD ANGL. DEV. = -8.5 DEGREES REMARK 500 PRO A 47 C - N - CA ANGL. DEV. = 15.7 DEGREES REMARK 500 PRO A 47 C - N - CD ANGL. DEV. = -17.7 DEGREES REMARK 500 PRO A 158 C - N - CA ANGL. DEV. = 14.5 DEGREES REMARK 500 ASP A 222 C - N - CA ANGL. DEV. = -23.2 DEGREES REMARK 500 ASP A 222 CB - CG - OD2 ANGL. DEV. = 9.0 DEGREES REMARK 500 ASP A 222 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 PRO A 223 C - N - CA ANGL. DEV. = -12.9 DEGREES REMARK 500 PRO A 223 C - N - CD ANGL. DEV. = -25.9 DEGREES REMARK 500 PRO A 223 N - CA - C ANGL. DEV. = -24.2 DEGREES REMARK 500 PRO A 231 C - N - CA ANGL. DEV. = 13.1 DEGREES REMARK 500 PRO A 231 C - N - CD ANGL. DEV. = -29.7 DEGREES REMARK 500 ASN A 233 N - CA - C ANGL. DEV. = 21.2 DEGREES REMARK 500 GLU A 234 N - CA - C ANGL. DEV. = -20.5 DEGREES REMARK 500 GLU A 234 CA - C - N ANGL. DEV. = -13.8 DEGREES REMARK 500 ILE A 235 C - N - CA ANGL. DEV. = 18.5 DEGREES REMARK 500 ILE A 235 N - CA - C ANGL. DEV. = 34.4 DEGREES REMARK 500 ILE A 235 CA - C - N ANGL. DEV. = -12.3 DEGREES REMARK 500 GLY A 236 N - CA - C ANGL. DEV. = -25.0 DEGREES REMARK 500 PRO A 250 C - N - CA ANGL. DEV. = 12.5 DEGREES REMARK 500 PRO A 253 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 SER A 277 N - CA - C ANGL. DEV. = -19.4 DEGREES REMARK 500 PHE A 290 C - N - CA ANGL. DEV. = -21.1 DEGREES REMARK 500 PHE A 290 N - CA - C ANGL. DEV. = 34.4 DEGREES REMARK 500 PHE A 290 CA - C - N ANGL. DEV. = -18.0 DEGREES REMARK 500 ALA A 335 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 VAL A 336 N - CA - C ANGL. DEV. = 21.1 DEGREES REMARK 500 SER A 337 N - CA - C ANGL. DEV. = -19.4 DEGREES REMARK 500 PRO A 359 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 GLN A 362 N - CA - C ANGL. DEV. = -20.8 DEGREES REMARK 500 ASP A 374 N - CA - C ANGL. DEV. = 31.3 DEGREES REMARK 500 PRO A 375 C - N - CA ANGL. DEV. = -21.1 DEGREES REMARK 500 ALA A 376 N - CA - C ANGL. DEV. = 26.1 DEGREES REMARK 500 SER A 398 C - N - CA ANGL. DEV. = -15.3 DEGREES REMARK 500 SER A 398 N - CA - C ANGL. DEV. = 30.7 DEGREES REMARK 500 GLU A 399 C - N - CA ANGL. DEV. = -16.4 DEGREES REMARK 500 CYS A 448 CA - CB - SG ANGL. DEV. = -12.0 DEGREES REMARK 500 PRO A 466 C - N - CD ANGL. DEV. = -24.3 DEGREES REMARK 500 SER A 476 N - CA - C ANGL. DEV. = 17.7 DEGREES REMARK 500 LEU A 481 CA - CB - CG ANGL. DEV. = -20.1 DEGREES REMARK 500 LEU A 481 N - CA - C ANGL. DEV. = -25.1 DEGREES REMARK 500 GLY A 491 N - CA - C ANGL. DEV. = 16.3 DEGREES REMARK 500 THR A 492 N - CA - C ANGL. DEV. = 18.3 DEGREES REMARK 500 LEU A 502 N - CA - C ANGL. DEV. = 16.3 DEGREES REMARK 500 LYS A 503 N - CA - C ANGL. DEV. = 18.9 DEGREES REMARK 500 ALA A 516 N - CA - C ANGL. DEV. = -22.6 DEGREES REMARK 500 PRO A 520 C - N - CA ANGL. DEV. = -15.2 DEGREES REMARK 500 PRO A 520 N - CA - C ANGL. DEV. = 24.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 58 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 3 -143.54 -79.24 REMARK 500 ARG A 14 117.17 -165.37 REMARK 500 LEU A 21 -60.82 -100.58 REMARK 500 LYS A 28 23.96 -77.90 REMARK 500 ALA A 43 -101.09 -103.11 REMARK 500 TRP A 55 -31.21 -35.22 REMARK 500 PRO A 91 177.07 -43.50 REMARK 500 ASN A 102 74.12 -66.37 REMARK 500 VAL A 127 -87.35 -101.57 REMARK 500 MET A 128 -159.95 -95.92 REMARK 500 ASN A 138 34.52 -156.74 REMARK 500 ASP A 140 -8.42 -150.57 REMARK 500 LEU A 151 13.14 -142.10 REMARK 500 LYS A 152 103.14 179.92 REMARK 500 ASP A 154 -165.98 -74.98 REMARK 500 PRO A 155 61.51 38.45 REMARK 500 GLU A 156 27.10 -63.94 REMARK 500 THR A 212 176.37 -51.93 REMARK 500 GLU A 234 -52.75 -130.78 REMARK 500 ILE A 235 146.46 -20.69 REMARK 500 GLU A 238 108.66 -58.70 REMARK 500 ASP A 248 -163.13 -74.63 REMARK 500 PRO A 250 -71.43 -22.26 REMARK 500 PRO A 253 0.62 -59.83 REMARK 500 TYR A 259 -165.31 -114.52 REMARK 500 LYS A 260 146.54 160.22 REMARK 500 GLU A 265 -70.39 -27.82 REMARK 500 PRO A 275 56.73 -64.79 REMARK 500 GLU A 276 -76.17 -113.69 REMARK 500 ASN A 278 57.59 24.62 REMARK 500 LEU A 288 -154.00 -128.05 REMARK 500 ASP A 289 32.29 -166.83 REMARK 500 PRO A 307 174.46 -50.70 REMARK 500 VAL A 333 -87.43 -68.84 REMARK 500 SER A 337 79.92 -104.14 REMARK 500 ARG A 338 -74.27 -102.30 REMARK 500 ARG A 347 91.29 -42.95 REMARK 500 ILE A 351 -65.89 -103.72 REMARK 500 PRO A 359 -76.92 -48.42 REMARK 500 ASP A 360 100.59 -38.92 REMARK 500 GLN A 362 -1.40 -160.66 REMARK 500 GLN A 363 91.77 -37.01 REMARK 500 ILE A 364 65.37 -164.38 REMARK 500 GLN A 365 110.16 -164.75 REMARK 500 ASN A 373 -177.31 -61.56 REMARK 500 ASP A 374 10.04 -165.66 REMARK 500 PRO A 375 163.18 -42.03 REMARK 500 ARG A 377 101.80 -19.95 REMARK 500 TRP A 378 -77.00 -129.60 REMARK 500 ASN A 385 8.61 -158.09 REMARK 500 REMARK 500 THIS ENTRY HAS 89 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 17 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 18 -12.78 REMARK 500 ASP A 222 12.61 REMARK 500 PRO A 520 -15.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE1 REMARK 620 2 GLU A 69 OE1 79.2 REMARK 620 3 GLU A 69 OE2 109.0 47.3 REMARK 620 4 ASP A 100 OD1 98.3 162.7 119.7 REMARK 620 5 ASP A 100 OD2 113.9 123.1 77.4 42.2 REMARK 620 6 GLN A 101 N 53.3 132.1 137.6 46.0 77.6 REMARK 620 7 GLN A 101 O 80.2 129.1 166.9 66.4 107.8 55.3 REMARK 620 8 ASP A 103 OD1 54.3 56.1 103.4 135.5 167.9 94.5 74.0 REMARK 620 9 ASP A 103 OD2 100.1 63.2 93.4 133.8 146.0 125.4 75.5 46.0 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE2 REMARK 620 2 ASN A 12 OD1 92.4 REMARK 620 3 ASP A 67 OD2 58.5 130.6 REMARK 620 4 GLU A 69 OE1 53.7 134.8 60.7 REMARK 620 5 ASP A 103 OD1 67.1 64.4 122.8 74.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 600 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 102 OD1 REMARK 620 2 ASN A 104 O 115.6 REMARK 620 3 ASP A 134 OD1 152.1 80.4 REMARK 620 4 ASP A 134 OD2 143.7 86.5 54.0 REMARK 620 5 ASP A 136 OD2 76.9 84.4 82.6 136.5 REMARK 620 6 ASN A 143 O 82.3 161.3 81.0 81.0 95.1 REMARK 620 7 ASP A 195 OD2 87.4 110.1 109.2 57.1 162.4 74.5 REMARK 620 8 ASP A 195 OD1 62.7 86.8 144.2 92.3 129.4 107.5 45.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 119 OE2 REMARK 620 2 GLU A 182 OE1 59.5 REMARK 620 3 GLU A 182 OE2 83.7 43.1 REMARK 620 4 ASP A 213 OD1 93.0 103.5 141.9 REMARK 620 5 ASP A 213 OD2 90.0 137.9 170.3 45.5 REMARK 620 6 ALA A 214 O 78.3 129.2 110.5 105.8 60.8 REMARK 620 7 ASP A 216 OD1 53.0 70.4 54.4 144.5 115.9 61.5 REMARK 620 8 ASP A 248 OD2 139.9 120.2 78.7 122.6 101.8 74.7 87.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 119 OE1 REMARK 620 2 ASP A 180 OD2 109.0 REMARK 620 3 ASP A 180 OD1 70.5 40.3 REMARK 620 4 GLU A 182 OE1 52.0 94.3 61.0 REMARK 620 5 GLU A 182 OE2 92.9 95.0 85.3 43.6 REMARK 620 6 ASP A 216 OD1 60.8 145.1 112.1 52.2 55.2 REMARK 620 7 ASP A 216 OD2 64.8 167.4 135.3 89.9 96.3 43.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 605 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 215 OD1 REMARK 620 2 ASN A 217 O 103.8 REMARK 620 3 ASP A 246 OD1 152.5 98.0 REMARK 620 4 ASP A 246 OD2 141.7 95.0 50.2 REMARK 620 5 ASP A 248 OD1 78.7 88.5 85.4 135.5 REMARK 620 6 ALA A 254 O 92.5 163.5 67.5 69.8 97.8 REMARK 620 7 ASN A 304 OD1 75.2 107.9 113.8 67.4 151.8 73.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 606 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 232 OE2 REMARK 620 2 GLU A 232 OE1 49.2 REMARK 620 3 ASP A 289 OD2 90.0 119.7 REMARK 620 4 ASP A 289 O 89.3 90.1 40.1 REMARK 620 5 GLU A 291 OE2 137.7 89.2 122.9 99.7 REMARK 620 6 GLU A 328 OE2 70.7 98.8 107.1 143.0 116.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 610 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 232 OE1 REMARK 620 2 GLU A 291 OE1 97.2 REMARK 620 3 GLU A 291 OE2 67.1 40.3 REMARK 620 4 ASP A 325 OD2 72.4 98.6 112.1 REMARK 620 5 ASP A 325 OD1 109.2 80.5 115.1 39.4 REMARK 620 6 VAL A 326 O 92.7 165.0 154.4 73.7 85.6 REMARK 620 7 GLU A 328 OE1 98.7 119.0 96.5 142.3 143.8 70.2 REMARK 620 8 ASP A 360 OD2 159.9 89.7 108.6 125.4 90.5 84.8 61.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 607 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 327 OD1 REMARK 620 2 GLU A 328 O 101.8 REMARK 620 3 ASP A 358 OD1 106.8 85.0 REMARK 620 4 ASP A 358 OD2 146.2 66.6 43.1 REMARK 620 5 ASP A 360 OD1 54.2 76.6 57.5 92.1 REMARK 620 6 GLN A 365 OE1 90.2 141.4 56.4 83.0 81.4 REMARK 620 7 ASP A 414 OD2 101.1 97.4 150.9 111.5 151.3 116.3 REMARK 620 8 ASP A 414 OD1 119.9 127.2 109.7 89.8 154.1 73.2 46.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 608 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 343 OE2 REMARK 620 2 GLU A 343 OE1 47.5 REMARK 620 3 ASP A 395 OD2 112.2 133.3 REMARK 620 4 ASP A 395 OD1 59.3 95.5 53.1 REMARK 620 5 GLU A 397 OE1 106.9 60.4 125.4 146.1 REMARK 620 6 ASP A 435 OD1 57.3 82.9 124.8 90.4 108.1 REMARK 620 7 ASP A 435 OD2 90.6 78.1 148.5 140.2 62.5 50.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 611 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 343 OE1 REMARK 620 2 GLU A 397 OE1 60.7 REMARK 620 3 GLU A 397 OE2 116.2 59.0 REMARK 620 4 ASP A 432 OD1 123.0 113.7 68.0 REMARK 620 5 VAL A 433 N 98.6 145.2 119.6 51.6 REMARK 620 6 VAL A 433 O 140.3 158.6 102.3 62.1 50.9 REMARK 620 7 ASP A 435 OD2 87.6 76.1 96.9 149.2 134.2 97.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 609 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 434 OD1 REMARK 620 2 ASN A 434 ND2 44.8 REMARK 620 3 ASN A 436 O 111.9 81.2 REMARK 620 4 ASP A 461 OD2 139.6 140.3 108.0 REMARK 620 5 ASP A 461 OD1 143.5 169.6 88.6 41.7 REMARK 620 6 ASP A 463 OD1 63.9 82.2 72.4 137.5 96.9 REMARK 620 7 ASN A 467 O 62.3 87.5 167.3 77.4 102.4 111.8 REMARK 620 8 ASP A 515 OD2 101.7 86.2 114.5 54.6 96.1 165.5 58.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NCG RELATED DB: PDB REMARK 900 N-CADHERIN 1-DOMAIN CRYSTAL STRUCTURE REMARK 900 RELATED ID: 1NCH RELATED DB: PDB REMARK 900 N-CADHERIN 1-DOMAIN CRYSTAL STRUCTURE REMARK 900 RELATED ID: 1NCI RELATED DB: PDB REMARK 900 N-CADHERIN 1-DOMAIN CRYSTAL STRUCTURE REMARK 900 RELATED ID: 1EDH RELATED DB: PDB REMARK 900 E-CADHERIN 2-DOMAIN CRYSTAL STRUCTURE REMARK 900 RELATED ID: 1FF5 RELATED DB: PDB REMARK 900 E-CADHERIN 2-DOMAIN CRYSTAL STRUCTURE DBREF 1L3W A 1 540 UNP P33148 CADHF_XENLA 156 695 SEQADV 1L3W HIS A -5 UNP P33148 EXPRESSION TAG SEQADV 1L3W HIS A -4 UNP P33148 EXPRESSION TAG SEQADV 1L3W HIS A -3 UNP P33148 EXPRESSION TAG SEQADV 1L3W HIS A -2 UNP P33148 EXPRESSION TAG SEQADV 1L3W HIS A -1 UNP P33148 EXPRESSION TAG SEQADV 1L3W HIS A 0 UNP P33148 EXPRESSION TAG SEQRES 1 A 546 HIS HIS HIS HIS HIS HIS ASP TRP VAL ILE PRO PRO ILE SEQRES 2 A 546 LYS VAL SER GLU ASN GLU ARG GLY PRO PHE PRO LYS ARG SEQRES 3 A 546 LEU VAL GLN ILE LYS SER ASN LYS ASP ARG PHE ASN LYS SEQRES 4 A 546 VAL TYR TYR SER ILE THR GLY GLN GLY ALA ASP ASN PRO SEQRES 5 A 546 PRO GLN GLY VAL PHE ARG ILE GLU TRP GLU THR GLY TRP SEQRES 6 A 546 MET LEU VAL THR ARG PRO LEU ASP ARG GLU GLU TYR ASP SEQRES 7 A 546 LYS TYR VAL LEU SER SER HIS ALA VAL SER GLU ASN GLY SEQRES 8 A 546 SER PRO VAL GLU GLU PRO MET GLU ILE THR ILE ASN VAL SEQRES 9 A 546 ILE ASP GLN ASN ASP ASN ARG PRO LYS PHE THR GLN ASP SEQRES 10 A 546 VAL PHE ARG GLY SER VAL ARG GLU GLY VAL GLN PRO GLY SEQRES 11 A 546 THR GLN VAL MET ALA VAL SER ALA THR ASP GLU ASP ASP SEQRES 12 A 546 ASN ILE ASP SER LEU ASN GLY VAL LEU SER TYR SER ILE SEQRES 13 A 546 LEU LYS GLN ASP PRO GLU GLU PRO ILE PRO ASN LEU PHE SEQRES 14 A 546 THR ILE ASN ARG GLU THR GLY VAL ILE SER LEU ILE GLY SEQRES 15 A 546 THR GLY LEU ASP ARG GLU LYS PHE PRO GLU TYR THR LEU SEQRES 16 A 546 THR VAL GLN ALA THR ASP LEU GLU GLY ALA GLY LEU SER SEQRES 17 A 546 VAL GLU GLY LYS ALA ILE ILE GLN ILE THR ASP ALA ASN SEQRES 18 A 546 ASP ASN ALA PRO ILE PHE ASP PRO LYS THR TYR THR ALA SEQRES 19 A 546 LEU VAL PRO GLU ASN GLU ILE GLY PHE GLU VAL GLN ARG SEQRES 20 A 546 LEU SER VAL THR ASP LEU ASP MET PRO GLY THR PRO ALA SEQRES 21 A 546 TRP GLN ALA VAL TYR LYS ILE ARG VAL ASN GLU GLY GLY SEQRES 22 A 546 PHE PHE ASN ILE THR THR ASP PRO GLU SER ASN GLN GLY SEQRES 23 A 546 ILE LEU THR THR ALA LYS GLY LEU ASP PHE GLU LEU ARG SEQRES 24 A 546 LYS GLN TYR VAL LEU GLN ILE THR VAL GLU ASN ALA GLU SEQRES 25 A 546 PRO PHE SER VAL PRO LEU PRO THR SER THR ALA THR VAL SEQRES 26 A 546 THR VAL THR VAL GLU ASP VAL ASN GLU ALA PRO PHE PHE SEQRES 27 A 546 VAL PRO ALA VAL SER ARG VAL ASP VAL SER GLU ASP LEU SEQRES 28 A 546 SER ARG GLY GLU LYS ILE ILE SER LEU VAL ALA GLN ASP SEQRES 29 A 546 PRO ASP LYS GLN GLN ILE GLN LYS LEU SER TYR PHE ILE SEQRES 30 A 546 GLY ASN ASP PRO ALA ARG TRP LEU THR VAL ASN LYS ASP SEQRES 31 A 546 ASN GLY ILE VAL THR GLY ASN GLY ASN LEU ASP ARG GLU SEQRES 32 A 546 SER GLU TYR VAL LYS ASN ASN THR TYR THR VAL ILE MET SEQRES 33 A 546 LEU VAL THR ASP ASP GLY VAL SER VAL GLY THR GLY THR SEQRES 34 A 546 GLY THR LEU ILE LEU HIS VAL LEU ASP VAL ASN ASP ASN SEQRES 35 A 546 GLY PRO VAL PRO SER PRO ARG VAL PHE THR MET CYS ASP SEQRES 36 A 546 GLN ASN PRO GLU PRO GLN VAL LEU THR ILE SER ASP ALA SEQRES 37 A 546 ASP ILE PRO PRO ASN THR TYR PRO TYR LYS VAL SER LEU SEQRES 38 A 546 SER HIS GLY SER ASP LEU THR TRP LYS ALA GLU LEU ASP SEQRES 39 A 546 SER LYS GLY THR SER MET LEU LEU SER PRO THR GLN GLN SEQRES 40 A 546 LEU LYS LYS GLY ASP TYR SER ILE TYR VAL LEU LEU SER SEQRES 41 A 546 ASP ALA GLN ASN ASN PRO GLN LEU THR VAL VAL ASN ALA SEQRES 42 A 546 THR VAL CYS SER CYS GLU GLY LYS ALA ILE LYS CYS GLN MODRES 1L3W THR A 188 THR GLYCOSYLATION SITE MODRES 1L3W THR A 227 THR GLYCOSYLATION SITE MODRES 1L3W THR A 245 THR GLYCOSYLATION SITE MODRES 1L3W ASN A 270 ASN GLYCOSYLATION SITE MODRES 1L3W THR A 273 THR GLYCOSYLATION SITE MODRES 1L3W THR A 314 THR GLYCOSYLATION SITE MODRES 1L3W THR A 316 THR GLYCOSYLATION SITE MODRES 1L3W THR A 318 THR GLYCOSYLATION SITE MODRES 1L3W THR A 320 THR GLYCOSYLATION SITE MODRES 1L3W ASN A 403 ASN GLYCOSYLATION SITE MODRES 1L3W THR A 407 THR GLYCOSYLATION SITE MODRES 1L3W THR A 421 THR GLYCOSYLATION SITE MODRES 1L3W THR A 423 THR GLYCOSYLATION SITE MODRES 1L3W THR A 425 THR GLYCOSYLATION SITE MODRES 1L3W ASN A 526 ASN GLYCOSYLATION SITE HET NAG A 801 14 HET NAG A 802 14 HET NAG A 803 14 HET NDG A 804 14 HET NAG A 805 14 HET NAG A 806 14 HET NAG A 807 14 HET NAG A 808 14 HET NAG A 809 14 HET NAG A 810 14 HET NDG A 811 14 HET NAG A 812 14 HET NAG A 902 14 HET NAG A 903 14 HET NAG A 904 14 HET CA A 600 1 HET CA A 601 1 HET CA A 602 1 HET CA A 603 1 HET CA A 604 1 HET CA A 605 1 HET CA A 606 1 HET CA A 607 1 HET CA A 608 1 HET CA A 609 1 HET CA A 610 1 HET CA A 611 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE FORMUL 2 NAG 13(C8 H15 N O6) FORMUL 5 NDG 2(C8 H15 N O6) FORMUL 17 CA 12(CA 2+) FORMUL 29 HOH *38(H2 O) HELIX 1 1 ASN A 27 PHE A 31 5 5 HELIX 2 2 ASP A 195 ALA A 199 1 5 SHEET 1 1 3 MET A 92 ILE A 99 0 SHEET 2 1 3 LYS A 73 SER A 82 -1 O TYR A 74 N ILE A 96 SHEET 3 1 3 VAL A 34 GLY A 40 -1 N TYR A 35 O VAL A 81 SHEET 1 9 5 ALA A 207 THR A 212 0 SHEET 2 9 5 GLU A 186 THR A 194 -1 O TYR A 187 N ILE A 209 SHEET 3 9 5 SER A 202 GLU A 204 -1 N VAL A 203 O ALA A 193 SHEET 4 9 5 GLU A 186 THR A 194 -1 O ALA A 193 N VAL A 203 SHEET 5 9 5 TYR A 148 GLN A 153 -1 O SER A 149 N GLN A 192 SHEET 1 4 2 TRP A 59 VAL A 62 0 SHEET 2 4 2 LYS A 19 GLN A 23 -1 O LYS A 19 N VAL A 62 SHEET 1 10 2 VAL A 171 LEU A 174 0 SHEET 2 10 2 PHE A 163 ILE A 165 -1 O THR A 164 N SER A 173 SHEET 1 18 2 ALA A 317 GLU A 324 0 SHEET 2 18 2 TYR A 296 ILE A 300 -1 O TYR A 296 N VAL A 321 SHEET 1 19 2 GLY A 280 THR A 284 0 SHEET 2 19 2 PHE A 269 THR A 273 -1 O ASN A 270 N THR A 283 SHEET 1 28 2 ILE A 387 GLY A 390 0 SHEET 2 28 2 THR A 380 ASN A 382 -1 O THR A 380 N THR A 389 SHEET 1 30 2 THR A 407 ASP A 414 0 SHEET 2 30 2 GLY A 424 ILE A 427 -1 O GLY A 424 N MET A 410 SHEET 1 35 1 ALA A 527 VAL A 529 0 SHEET 1 36 1 SER A 493 LEU A 496 0 SHEET 1 38 1 GLN A 521 VAL A 524 0 SSBOND 1 CYS A 448 CYS A 532 1555 1555 2.05 SSBOND 2 CYS A 530 CYS A 539 1555 1555 2.10 LINK O GLU A 186 O7 NAG A 801 1555 1555 2.03 LINK OG1 THR A 188 C1 NAG A 801 1555 1555 1.37 LINK OG1 THR A 188 C2 NAG A 801 1555 1555 1.97 LINK OG1 THR A 227 C1 NAG A 812 1555 1555 1.41 LINK OG1 THR A 245 C1 NAG A 802 1555 1555 1.40 LINK ND2 ASN A 270 C1 NAG A 903 1555 1555 1.45 LINK OG1 THR A 273 C1 NAG A 803 1555 1555 1.38 LINK OG1 THR A 314 C1 NDG A 804 1555 1555 1.38 LINK OG1 THR A 316 C1 NAG A 805 1555 1555 1.39 LINK OG1 THR A 316 O5 NAG A 805 1555 1555 1.96 LINK OG1 THR A 318 C1 NAG A 806 1555 1555 1.39 LINK OG1 THR A 320 C1 NAG A 807 1555 1555 1.41 LINK OG1 THR A 320 O5 NAG A 807 1555 1555 1.90 LINK ND2 ASN A 403 C1 NAG A 902 1555 1555 1.42 LINK OG1 THR A 407 C1 NAG A 808 1555 1555 1.40 LINK OG1 THR A 421 C1 NAG A 809 1555 1555 1.42 LINK OG1 THR A 421 O5 NAG A 809 1555 1555 1.76 LINK OG1 THR A 423 C1 NAG A 810 1555 1555 1.41 LINK OG1 THR A 425 C1 NDG A 811 1555 1555 1.42 LINK OG1 THR A 425 O5 NDG A 811 1555 1555 1.73 LINK ND2 ASN A 526 C1 NAG A 904 1555 1555 1.45 LINK OE1 GLU A 11 CA CA A 601 1555 1555 2.71 LINK OE2 GLU A 11 CA CA A 602 1555 1555 2.67 LINK OD1 ASN A 12 CA CA A 602 1555 1555 3.25 LINK OD2 ASP A 67 CA CA A 602 1555 1555 2.24 LINK OE1 GLU A 69 CA CA A 601 1555 1555 3.00 LINK OE2 GLU A 69 CA CA A 601 1555 1555 2.29 LINK OE1 GLU A 69 CA CA A 602 1555 1555 2.39 LINK OD1 ASP A 100 CA CA A 601 1555 1555 3.05 LINK OD2 ASP A 100 CA CA A 601 1555 1555 2.96 LINK N GLN A 101 CA CA A 601 1555 1555 3.29 LINK O GLN A 101 CA CA A 601 1555 1555 2.22 LINK OD1 ASN A 102 CA CA A 600 1555 1555 2.78 LINK OD1 ASP A 103 CA CA A 601 1555 1555 2.98 LINK OD2 ASP A 103 CA CA A 601 1555 1555 2.50 LINK OD1 ASP A 103 CA CA A 602 1555 1555 2.26 LINK O ASN A 104 CA CA A 600 1555 1555 2.31 LINK OE2 GLU A 119 CA CA A 603 1555 1555 2.69 LINK OE1 GLU A 119 CA CA A 604 1555 1555 2.48 LINK OD1 ASP A 134 CA CA A 600 1555 1555 2.61 LINK OD2 ASP A 134 CA CA A 600 1555 1555 2.13 LINK OD2 ASP A 136 CA CA A 600 1555 1555 2.76 LINK OD1 ASP A 136 CA CA A 601 1555 1555 2.17 LINK O ASN A 143 CA CA A 600 1555 1555 2.33 LINK OD2 ASP A 180 CA CA A 604 1555 1555 3.34 LINK OD1 ASP A 180 CA CA A 604 1555 1555 2.15 LINK OE1 GLU A 182 CA CA A 603 1555 1555 2.38 LINK OE2 GLU A 182 CA CA A 603 1555 1555 3.21 LINK OE1 GLU A 182 CA CA A 604 1555 1555 3.18 LINK OE2 GLU A 182 CA CA A 604 1555 1555 2.33 LINK OD2 ASP A 195 CA CA A 600 1555 1555 2.76 LINK OD1 ASP A 195 CA CA A 600 1555 1555 2.94 LINK OD1 ASP A 213 CA CA A 603 1555 1555 2.68 LINK OD2 ASP A 213 CA CA A 603 1555 1555 2.90 LINK O ALA A 214 CA CA A 603 1555 1555 2.34 LINK OD1 ASN A 215 CA CA A 605 1555 1555 2.40 LINK OD1 ASP A 216 CA CA A 603 1555 1555 2.48 LINK OD1 ASP A 216 CA CA A 604 1555 1555 3.20 LINK OD2 ASP A 216 CA CA A 604 1555 1555 2.37 LINK O ASN A 217 CA CA A 605 1555 1555 2.26 LINK OE2 GLU A 232 CA CA A 606 1555 1555 2.11 LINK OE1 GLU A 232 CA CA A 606 1555 1555 2.92 LINK OE1 GLU A 232 CA CA A 610 1555 1555 3.00 LINK OD1 ASP A 246 CA CA A 605 1555 1555 2.66 LINK OD2 ASP A 246 CA CA A 605 1555 1555 2.51 LINK OD2 ASP A 248 CA CA A 603 1555 1555 2.18 LINK OD1 ASP A 248 CA CA A 605 1555 1555 2.36 LINK O ALA A 254 CA CA A 605 1555 1555 2.74 LINK OD2 ASP A 289 CA CA A 606 1555 1555 2.86 LINK O ASP A 289 CA CA A 606 1555 1555 2.89 LINK OE2 GLU A 291 CA CA A 606 1555 1555 1.97 LINK OE1 GLU A 291 CA CA A 610 1555 1555 2.04 LINK OE2 GLU A 291 CA CA A 610 1555 1555 3.31 LINK OD1 ASN A 304 CA CA A 605 1555 1555 2.50 LINK OD2 ASP A 325 CA CA A 610 1555 1555 2.20 LINK OD1 ASP A 325 CA CA A 610 1555 1555 3.39 LINK O VAL A 326 CA CA A 610 1555 1555 2.11 LINK OD1 ASN A 327 CA CA A 607 1555 1555 2.00 LINK OE2 GLU A 328 CA CA A 606 1555 1555 2.94 LINK O GLU A 328 CA CA A 607 1555 1555 2.32 LINK OE1 GLU A 328 CA CA A 610 1555 1555 2.51 LINK OE2 GLU A 343 CA CA A 608 1555 1555 2.63 LINK OE1 GLU A 343 CA CA A 608 1555 1555 2.82 LINK OE1 GLU A 343 CA CA A 611 1555 1555 2.90 LINK OD1 ASP A 358 CA CA A 607 1555 1555 3.19 LINK OD2 ASP A 358 CA CA A 607 1555 1555 2.64 LINK OD1 ASP A 360 CA CA A 607 1555 1555 2.80 LINK OD2 ASP A 360 CA CA A 610 1555 1555 2.71 LINK OE1 GLN A 365 CA CA A 607 1555 1555 2.56 LINK OD2 ASP A 395 CA CA A 608 1555 1555 2.15 LINK OD1 ASP A 395 CA CA A 608 1555 1555 2.67 LINK OE1 GLU A 397 CA CA A 608 1555 1555 2.43 LINK OE1 GLU A 397 CA CA A 611 1555 1555 2.27 LINK OE2 GLU A 397 CA CA A 611 1555 1555 2.21 LINK OD2 ASP A 414 CA CA A 607 1555 1555 2.52 LINK OD1 ASP A 414 CA CA A 607 1555 1555 2.94 LINK OD1 ASP A 432 CA CA A 611 1555 1555 2.32 LINK N VAL A 433 CA CA A 611 1555 1555 3.31 LINK O VAL A 433 CA CA A 611 1555 1555 2.37 LINK OD1 ASN A 434 CA CA A 609 1555 1555 2.34 LINK ND2 ASN A 434 CA CA A 609 1555 1555 3.17 LINK OD1 ASP A 435 CA CA A 608 1555 1555 2.54 LINK OD2 ASP A 435 CA CA A 608 1555 1555 2.66 LINK OD2 ASP A 435 CA CA A 611 1555 1555 2.02 LINK O ASN A 436 CA CA A 609 1555 1555 2.66 LINK OD2 ASP A 461 CA CA A 609 1555 1555 3.29 LINK OD1 ASP A 461 CA CA A 609 1555 1555 2.29 LINK OD1 ASP A 463 CA CA A 609 1555 1555 2.35 LINK O ASN A 467 CA CA A 609 1555 1555 3.02 LINK OD2 ASP A 515 CA CA A 609 1555 1555 2.33 CISPEP 1 PHE A 17 PRO A 18 0 -1.20 CISPEP 2 PRO A 46 PRO A 47 0 -10.58 CISPEP 3 GLU A 157 PRO A 158 0 3.01 CISPEP 4 PRO A 465 PRO A 466 0 8.50 CRYST1 127.166 75.135 129.813 90.00 105.50 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007864 0.000000 0.002181 0.00000 SCALE2 0.000000 0.013309 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007994 0.00000