data_1L6B # _entry.id 1L6B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1L6B pdb_00001l6b 10.2210/pdb1l6b/pdb NDB UD0019 ? ? RCSB RCSB015679 ? ? WWPDB D_1000015679 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-08-07 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_conn_type 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.value' 6 4 'Structure model' '_struct_conn.conn_type_id' 7 4 'Structure model' '_struct_conn.id' 8 4 'Structure model' '_struct_conn.pdbx_dist_value' 9 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 11 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 12 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 18 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 24 4 'Structure model' '_struct_conn_type.id' 25 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 26 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 27 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1L6B _pdbx_database_status.recvd_initial_deposition_date 2002-03-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vargason, J.M.' 1 'Ho, P.S.' 2 # _citation.id primary _citation.title ;The effect of cytosine methylation on the structure and geometry of the Holliday junction: the structure of d(CCGGTACm5CGG) at 1.5 A resolution. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 277 _citation.page_first 21041 _citation.page_last 21049 _citation.year 2002 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11919197 _citation.pdbx_database_id_DOI 10.1074/jbc.M201357200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vargason, J.M.' 1 ? primary 'Ho, P.S.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*GP*GP*TP*AP*CP*(5CM)P*GP*G)-3'" 3060.020 2 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 water nat water 18.015 95 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DG)(DG)(DT)(DA)(DC)(5CM)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCGGTACCGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DA n 1 7 DC n 1 8 5CM n 1 9 DG n 1 10 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'The sequence is chemically synthesized.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 5CM 8 8 8 5CM +C A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n B 1 1 DC 1 11 11 DC C B . n B 1 2 DC 2 12 12 DC C B . n B 1 3 DG 3 13 13 DG G B . n B 1 4 DG 4 14 14 DG G B . n B 1 5 DT 5 15 15 DT T B . n B 1 6 DA 6 16 16 DA A B . n B 1 7 DC 7 17 17 DC C B . n B 1 8 5CM 8 18 18 5CM +C B . n B 1 9 DG 9 19 19 DG G B . n B 1 10 DG 10 20 20 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA 1 21 21 CA CA B . D 3 HOH 1 22 22 HOH HOH A . D 3 HOH 2 23 23 HOH HOH A . D 3 HOH 3 24 24 HOH HOH A . D 3 HOH 4 28 28 HOH HOH A . D 3 HOH 5 29 29 HOH HOH A . D 3 HOH 6 30 30 HOH HOH A . D 3 HOH 7 31 31 HOH HOH A . D 3 HOH 8 32 32 HOH HOH A . D 3 HOH 9 33 33 HOH HOH A . D 3 HOH 10 34 34 HOH HOH A . D 3 HOH 11 35 35 HOH HOH A . D 3 HOH 12 36 36 HOH HOH A . D 3 HOH 13 39 39 HOH HOH A . D 3 HOH 14 40 40 HOH HOH A . D 3 HOH 15 54 54 HOH HOH A . D 3 HOH 16 61 61 HOH HOH A . D 3 HOH 17 64 64 HOH HOH A . D 3 HOH 18 65 65 HOH HOH A . D 3 HOH 19 67 67 HOH HOH A . D 3 HOH 20 68 68 HOH HOH A . D 3 HOH 21 70 70 HOH HOH A . D 3 HOH 22 75 75 HOH HOH A . D 3 HOH 23 78 78 HOH HOH A . D 3 HOH 24 85 85 HOH HOH A . D 3 HOH 25 86 86 HOH HOH A . D 3 HOH 26 87 87 HOH HOH A . D 3 HOH 27 88 88 HOH HOH A . D 3 HOH 28 90 90 HOH HOH A . D 3 HOH 29 91 91 HOH HOH A . D 3 HOH 30 93 93 HOH HOH A . D 3 HOH 31 94 94 HOH HOH A . D 3 HOH 32 96 96 HOH HOH A . D 3 HOH 33 99 99 HOH HOH A . D 3 HOH 34 100 100 HOH HOH A . D 3 HOH 35 101 101 HOH HOH A . D 3 HOH 36 102 102 HOH HOH A . D 3 HOH 37 103 103 HOH HOH A . D 3 HOH 38 108 108 HOH HOH A . D 3 HOH 39 109 109 HOH HOH A . D 3 HOH 40 110 110 HOH HOH A . D 3 HOH 41 113 113 HOH HOH A . D 3 HOH 42 114 114 HOH HOH A . D 3 HOH 43 115 115 HOH HOH A . E 3 HOH 1 25 25 HOH HOH B . E 3 HOH 2 26 26 HOH HOH B . E 3 HOH 3 27 27 HOH HOH B . E 3 HOH 4 37 37 HOH HOH B . E 3 HOH 5 38 38 HOH HOH B . E 3 HOH 6 41 41 HOH HOH B . E 3 HOH 7 42 42 HOH HOH B . E 3 HOH 8 43 43 HOH HOH B . E 3 HOH 9 44 44 HOH HOH B . E 3 HOH 10 45 45 HOH HOH B . E 3 HOH 11 46 46 HOH HOH B . E 3 HOH 12 47 47 HOH HOH B . E 3 HOH 13 48 48 HOH HOH B . E 3 HOH 14 49 49 HOH HOH B . E 3 HOH 15 50 50 HOH HOH B . E 3 HOH 16 51 51 HOH HOH B . E 3 HOH 17 52 52 HOH HOH B . E 3 HOH 18 53 53 HOH HOH B . E 3 HOH 19 55 55 HOH HOH B . E 3 HOH 20 56 56 HOH HOH B . E 3 HOH 21 57 57 HOH HOH B . E 3 HOH 22 58 58 HOH HOH B . E 3 HOH 23 59 59 HOH HOH B . E 3 HOH 24 60 60 HOH HOH B . E 3 HOH 25 62 62 HOH HOH B . E 3 HOH 26 63 63 HOH HOH B . E 3 HOH 27 66 66 HOH HOH B . E 3 HOH 28 69 69 HOH HOH B . E 3 HOH 29 71 71 HOH HOH B . E 3 HOH 30 72 72 HOH HOH B . E 3 HOH 31 73 73 HOH HOH B . E 3 HOH 32 74 74 HOH HOH B . E 3 HOH 33 76 76 HOH HOH B . E 3 HOH 34 77 77 HOH HOH B . E 3 HOH 35 79 79 HOH HOH B . E 3 HOH 36 80 80 HOH HOH B . E 3 HOH 37 81 81 HOH HOH B . E 3 HOH 38 82 82 HOH HOH B . E 3 HOH 39 83 83 HOH HOH B . E 3 HOH 40 84 84 HOH HOH B . E 3 HOH 41 89 89 HOH HOH B . E 3 HOH 42 92 92 HOH HOH B . E 3 HOH 43 95 95 HOH HOH B . E 3 HOH 44 97 97 HOH HOH B . E 3 HOH 45 98 98 HOH HOH B . E 3 HOH 46 104 104 HOH HOH B . E 3 HOH 47 105 105 HOH HOH B . E 3 HOH 48 106 106 HOH HOH B . E 3 HOH 49 107 107 HOH HOH B . E 3 HOH 50 111 111 HOH HOH B . E 3 HOH 51 112 112 HOH HOH B . E 3 HOH 52 116 116 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 'Custom Script - Real Space translation/rotation/rigid body/rigid part search' ? 1 REFMAC refinement 5.0 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 X-PLOR phasing 'CUSTOM SCRIPT - REAL SPACE TRANSLATION/ROTATION/RIGID BODY/RIGID PART SEARCH' ? 5 # _cell.entry_id 1L6B _cell.length_a 65.503 _cell.length_b 24.704 _cell.length_c 36.975 _cell.angle_alpha 90.00 _cell.angle_beta 110.01 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L6B _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # _exptl.entry_id 1L6B _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 49.84 _exptl_crystal.density_Matthews 2.45 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'Sodium Cacodylate, CaCl2, Spermine tetrahydrochloride, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'Sodium Cacodylate' ? ? ? 1 2 1 CaCl2 ? ? ? 1 3 1 'Spermine tetrahydrochloride' ? ? ? 1 4 2 CaCl2 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2001-01-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 Chanel' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.150 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.150 # _reflns.entry_id 1L6B _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 16.28 _reflns.d_resolution_high 1.5 _reflns.number_obs 7988 _reflns.number_all 7988 _reflns.percent_possible_obs 87.3 _reflns.pdbx_Rmerge_I_obs 0.043 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.5 _reflns_shell.d_res_low 1.55 _reflns_shell.percent_possible_all 39.3 _reflns_shell.Rmerge_I_obs 0.325 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1L6B _refine.ls_number_reflns_obs 7986 _refine.ls_number_reflns_all 7986 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 16.28 _refine.ls_d_res_high 1.5 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.223 _refine.ls_R_factor_all 0.223 _refine.ls_R_factor_R_work 0.218 _refine.ls_R_factor_R_free 0.264 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 852 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'G.PARKINSON, J. VOJTECHOVSKY, L. CLOWNEY, A.T. BRUNGER, H.M. BERMAN' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag UNVERIFIED _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 95 _refine_hist.number_atoms_total 502 _refine_hist.d_res_high 1.5 _refine_hist.d_res_low 16.28 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? r_angle_deg 2.08 ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1L6B _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1L6B _struct.title 'CRYSTAL STRUCTURE ANALYSIS OF THE ALL DNA HOLLIDAY JUNCTION STRUCTURE OF CCGGTACM5CGG' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1L6B _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Holliday Junction, DNA four-way junction, cytosine methylation, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1L6B _struct_ref.pdbx_db_accession 1L6B _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1L6B A 1 ? 10 ? 1L6B 1 ? 10 ? 1 10 2 1 1L6B B 1 ? 10 ? 1L6B 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 -12.6522587768 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 34.7429269470 # _struct_biol.id 1 _struct_biol.details ;The second part of the biological assembly is generated by a crystallographic two-fold to give one fully watson-crick basepaired Holliday junction ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 7 "O3'" ? ? ? 1_555 A 5CM 8 P ? ? A DC 7 A 5CM 8 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale2 covale both ? A 5CM 8 "O3'" ? ? ? 1_555 A DG 9 P ? ? A 5CM 8 A DG 9 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale3 covale both ? B DC 7 "O3'" ? ? ? 1_555 B 5CM 8 P ? ? B DC 17 B 5CM 18 1_555 ? ? ? ? ? ? ? 1.572 ? ? covale4 covale both ? B 5CM 8 "O3'" ? ? ? 1_555 B DG 9 P ? ? B 5CM 18 B DG 19 1_555 ? ? ? ? ? ? ? 1.606 ? ? metalc1 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? B CA 21 B HOH 43 1_555 ? ? ? ? ? ? ? 2.514 ? ? metalc2 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? B CA 21 B HOH 44 1_555 ? ? ? ? ? ? ? 2.427 ? ? metalc3 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? B CA 21 B HOH 45 1_555 ? ? ? ? ? ? ? 2.527 ? ? metalc4 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? B CA 21 B HOH 46 1_555 ? ? ? ? ? ? ? 2.261 ? ? metalc5 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? B CA 21 B HOH 81 1_555 ? ? ? ? ? ? ? 2.121 ? ? metalc6 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? B CA 21 B HOH 98 1_555 ? ? ? ? ? ? ? 2.298 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B 5CM 8 N3 ? ? A DG 3 B 5CM 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B 5CM 8 O2 ? ? A DG 3 B 5CM 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B 5CM 8 N4 ? ? A DG 3 B 5CM 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? B HOH 43 ? 1_555 CA ? C CA . ? B CA 21 ? 1_555 O ? E HOH . ? B HOH 44 ? 1_555 80.4 ? 2 O ? E HOH . ? B HOH 43 ? 1_555 CA ? C CA . ? B CA 21 ? 1_555 O ? E HOH . ? B HOH 45 ? 1_555 114.2 ? 3 O ? E HOH . ? B HOH 44 ? 1_555 CA ? C CA . ? B CA 21 ? 1_555 O ? E HOH . ? B HOH 45 ? 1_555 76.0 ? 4 O ? E HOH . ? B HOH 43 ? 1_555 CA ? C CA . ? B CA 21 ? 1_555 O ? E HOH . ? B HOH 46 ? 1_555 144.1 ? 5 O ? E HOH . ? B HOH 44 ? 1_555 CA ? C CA . ? B CA 21 ? 1_555 O ? E HOH . ? B HOH 46 ? 1_555 74.3 ? 6 O ? E HOH . ? B HOH 45 ? 1_555 CA ? C CA . ? B CA 21 ? 1_555 O ? E HOH . ? B HOH 46 ? 1_555 84.0 ? 7 O ? E HOH . ? B HOH 43 ? 1_555 CA ? C CA . ? B CA 21 ? 1_555 O ? E HOH . ? B HOH 81 ? 1_555 59.1 ? 8 O ? E HOH . ? B HOH 44 ? 1_555 CA ? C CA . ? B CA 21 ? 1_555 O ? E HOH . ? B HOH 81 ? 1_555 138.4 ? 9 O ? E HOH . ? B HOH 45 ? 1_555 CA ? C CA . ? B CA 21 ? 1_555 O ? E HOH . ? B HOH 81 ? 1_555 127.0 ? 10 O ? E HOH . ? B HOH 46 ? 1_555 CA ? C CA . ? B CA 21 ? 1_555 O ? E HOH . ? B HOH 81 ? 1_555 134.7 ? 11 O ? E HOH . ? B HOH 43 ? 1_555 CA ? C CA . ? B CA 21 ? 1_555 O ? E HOH . ? B HOH 98 ? 1_555 76.3 ? 12 O ? E HOH . ? B HOH 44 ? 1_555 CA ? C CA . ? B CA 21 ? 1_555 O ? E HOH . ? B HOH 98 ? 1_555 132.3 ? 13 O ? E HOH . ? B HOH 45 ? 1_555 CA ? C CA . ? B CA 21 ? 1_555 O ? E HOH . ? B HOH 98 ? 1_555 76.6 ? 14 O ? E HOH . ? B HOH 46 ? 1_555 CA ? C CA . ? B CA 21 ? 1_555 O ? E HOH . ? B HOH 98 ? 1_555 139.5 ? 15 O ? E HOH . ? B HOH 81 ? 1_555 CA ? C CA . ? B CA 21 ? 1_555 O ? E HOH . ? B HOH 98 ? 1_555 50.4 ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id CA _struct_site.pdbx_auth_seq_id 21 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE CA B 21' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH E . ? HOH B 43 . ? 1_555 ? 2 AC1 6 HOH E . ? HOH B 44 . ? 1_555 ? 3 AC1 6 HOH E . ? HOH B 45 . ? 1_555 ? 4 AC1 6 HOH E . ? HOH B 46 . ? 1_555 ? 5 AC1 6 HOH E . ? HOH B 81 . ? 1_555 ? 6 AC1 6 HOH E . ? HOH B 98 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 70 ? ? O B HOH 104 ? ? 1.76 2 1 O B HOH 81 ? ? O B HOH 98 ? ? 1.89 3 1 O A HOH 96 ? ? O B HOH 50 ? ? 2.01 4 1 OP2 B DG 20 ? ? O B HOH 82 ? ? 2.01 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? "C2'" A DC 2 ? ? 97.80 105.90 -8.10 0.80 N 2 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 103.26 108.00 -4.74 0.70 N 3 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 103.04 108.00 -4.96 0.70 N 4 1 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? "C2'" B DC 12 ? ? 100.67 105.90 -5.23 0.80 N 5 1 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 103.72 108.00 -4.28 0.70 N 6 1 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 103.57 108.00 -4.43 0.70 N 7 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 102.19 108.00 -5.81 0.70 N 8 1 "C3'" B DT 15 ? ? "C2'" B DT 15 ? ? "C1'" B DT 15 ? ? 97.42 102.40 -4.98 0.80 N 9 1 "O4'" B DA 16 ? ? "C1'" B DA 16 ? ? N9 B DA 16 ? ? 101.27 108.00 -6.73 0.70 N 10 1 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 100.72 108.00 -7.28 0.70 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 5CM 8 A 5CM 8 ? DC ? 2 B 5CM 8 B 5CM 18 ? DC ? # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 108 ? D HOH . 2 1 B HOH 76 ? E HOH . # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -23.5496 -4.0210 31.5800 0.2193 0.2019 0.2009 -0.0509 0.0226 -0.0111 39.6562 65.7801 -30.5233 -65.3704 -3.5173 -27.2352 -0.0841 -0.9030 -0.5051 0.3513 0.1557 0.6348 1.1211 -0.8730 -0.0716 'X-RAY DIFFRACTION' 2 ? refined -24.3518 -2.2437 27.4043 0.2135 0.2145 0.2316 -0.0682 -0.0104 -0.0163 19.0929 7.7498 19.3486 -34.1174 6.4047 -3.7460 -0.3929 0.5998 0.2261 0.1842 -0.5138 -0.2891 -0.4788 0.9031 0.9067 'X-RAY DIFFRACTION' 3 ? refined -20.2174 -7.0259 31.7428 0.2822 0.2112 0.3076 -0.0708 0.0029 0.0620 73.6440 -31.1825 12.6152 29.7510 -34.8349 -7.8896 0.3110 -0.7572 -0.5078 0.9600 -1.0112 -0.4549 0.0084 0.5481 0.7002 'X-RAY DIFFRACTION' 4 ? refined -19.7853 -2.7001 29.4324 0.1780 0.2284 0.2290 -0.0714 0.0054 0.0183 31.8458 60.7766 15.3935 -16.4704 -17.2257 26.7388 -0.3105 0.0076 -0.1267 0.0063 -0.1597 -0.6120 0.1935 -0.2728 0.4701 'X-RAY DIFFRACTION' 5 ? refined -15.0534 -8.6311 29.9965 0.1361 0.1811 0.5998 0.0018 0.0531 0.1867 25.8388 140.7212 -49.6423 31.5804 -38.8855 -1.7557 -1.0436 -2.1748 -2.3502 -1.1715 -0.0225 -2.8706 -0.2093 1.0938 1.0661 'X-RAY DIFFRACTION' 6 ? refined -15.7179 -3.6051 28.5235 0.1474 0.2107 0.2390 -0.0708 0.0213 0.0077 19.3127 31.9537 39.3974 -18.7803 27.7757 -18.5586 0.0925 -0.0749 0.2600 0.1104 0.0654 -0.0749 0.5252 0.3620 -0.1580 'X-RAY DIFFRACTION' 7 ? refined -11.8014 -8.9161 24.7459 0.1127 0.0525 0.8587 0.0185 0.2925 -0.0218 -33.2176 97.4899 9.6956 35.6873 21.4316 8.6115 -0.4664 -0.8486 -0.6343 0.0611 1.8361 -0.9404 0.6118 0.1238 -1.3697 'X-RAY DIFFRACTION' 8 ? refined -12.2614 -3.8573 26.3341 0.1603 0.2080 0.2461 -0.0487 0.0251 0.0105 -15.6948 -1.1890 17.7216 6.3589 -5.6967 12.8826 0.4353 0.2259 0.1550 -0.2832 -0.5064 -0.0562 0.4219 0.4380 0.0712 'X-RAY DIFFRACTION' 9 ? refined -9.8904 -5.4184 20.2105 0.2247 0.2145 0.4111 -0.1052 0.0578 -0.1042 10.1295 -170.7949 39.3911 -5.6539 -56.9417 130.6918 -0.8956 -0.3819 -1.8019 4.3522 -1.9174 2.0470 1.4498 -0.1603 2.8130 'X-RAY DIFFRACTION' 10 ? refined -8.8316 -3.2726 24.3849 0.1104 0.1680 0.2505 -0.1023 0.0036 -0.0212 86.2189 142.9202 172.1028 -61.8312 116.8995 -175.8928 1.5859 -0.1292 0.1968 -0.3509 -1.6707 -1.1169 1.1662 -0.0665 0.0848 'X-RAY DIFFRACTION' 11 ? refined -8.7296 0.1935 18.4519 0.2338 0.2439 0.1803 -0.0041 0.0037 -0.0464 31.9197 -3.2971 37.5881 24.2335 36.3879 -29.4735 1.4370 -0.4494 -0.3081 -0.6766 -1.5241 -0.7593 1.5704 -0.0925 0.0871 'X-RAY DIFFRACTION' 12 ? refined -6.3843 -0.5946 23.3958 0.1604 0.2620 0.2816 -0.0896 -0.0044 -0.0031 -18.6331 27.9050 31.9223 -13.4605 -29.3996 13.8058 -0.1392 0.0019 0.0260 0.0020 -0.0358 -0.2992 0.2906 0.1245 0.1749 'X-RAY DIFFRACTION' 13 ? refined -8.1580 4.9250 15.2207 0.1646 0.2349 0.2170 0.0241 -0.0357 -0.0592 37.7508 4.5721 127.2733 14.6060 -13.7286 -32.8983 0.8822 -0.5793 0.3741 0.2324 -0.1017 0.2333 -1.0202 0.6222 -0.7804 'X-RAY DIFFRACTION' 14 ? refined -8.9181 1.5595 11.8048 0.1904 0.2589 0.2635 0.0547 -0.0007 -0.0179 -32.7401 55.2677 27.8329 11.3623 11.3356 -12.4559 0.0751 0.1836 -0.4812 -0.4189 -0.3610 0.1893 -0.1083 -0.0029 0.2859 'X-RAY DIFFRACTION' 15 ? refined -8.7823 9.0508 11.5989 0.2141 0.1596 0.2842 0.0013 -0.1155 -0.0377 12.6731 42.1537 40.4101 -22.8190 -0.3025 -45.6118 -1.2262 1.3317 0.1101 1.9541 0.6642 -0.2658 -1.1482 1.4436 0.5620 'X-RAY DIFFRACTION' 16 ? refined -11.9075 5.3907 12.2875 0.2353 0.2294 0.2299 0.0110 -0.0382 0.0237 5.5263 8.9619 -59.8856 10.7363 -24.5397 33.2917 0.3400 -0.5365 -0.1510 0.1242 -0.3654 0.1300 0.2653 0.3460 0.0254 'X-RAY DIFFRACTION' 17 ? refined -12.1175 11.6276 7.4152 0.3115 0.1570 0.2908 -0.0269 -0.0631 0.0400 -8.0511 2.3787 -38.5842 2.0084 -29.3745 -0.4330 0.1117 -0.6018 0.0702 -0.2074 -0.7694 -0.7221 0.3514 0.0497 0.6577 'X-RAY DIFFRACTION' 18 ? refined -14.7532 7.8645 9.7921 0.2187 0.2276 0.2407 0.0208 -0.0081 0.0094 0.3359 3.5442 7.9459 4.8936 6.5259 -2.4547 -0.1593 0.0172 -0.0179 0.0270 0.3810 -0.3305 -0.1823 0.5346 -0.2217 'X-RAY DIFFRACTION' 19 ? refined -15.8403 10.9027 2.8171 0.2728 0.2118 0.2113 0.0084 -0.0414 0.0882 14.6766 57.6915 -6.0534 10.3688 -13.2883 -0.2695 -0.2504 -1.0129 -0.7037 -1.1069 -0.8841 -1.5993 -1.2908 -1.2208 1.1345 'X-RAY DIFFRACTION' 20 ? refined -17.8822 9.2521 7.4232 0.1664 0.2276 0.2463 0.0389 -0.0065 0.0002 -15.4863 61.2629 31.9492 -8.6937 -1.4508 -19.7220 -0.3364 0.1117 -0.1955 0.0340 0.4591 -0.2928 -0.2823 0.1434 -0.1227 'X-RAY DIFFRACTION' 21 ? refined 7.4001 2.1815 21.4797 0.2593 0.2301 0.2168 -0.0886 -0.0099 -0.0165 27.0270 -78.9518 64.0552 -16.3273 -73.2060 26.9969 0.1635 0.0307 0.0330 0.1312 -0.0225 0.4782 1.1582 0.3953 -0.1409 'X-RAY DIFFRACTION' 22 ? refined 6.0313 6.4583 22.4479 0.1629 0.2372 0.2497 -0.0792 -0.0027 0.0083 -26.6266 84.4258 48.1060 -19.5159 -3.5969 -21.6730 -0.0233 0.2363 0.3677 0.4446 -0.2828 -0.2385 -0.0441 -0.1182 0.3061 'X-RAY DIFFRACTION' 23 ? refined 6.3693 -0.7713 24.8018 0.2241 0.2499 0.1960 0.0043 0.0379 -0.0342 -38.2354 25.7498 -8.0421 28.7267 31.0678 -4.4404 -1.5383 0.6958 -0.3909 0.1941 0.9944 0.1001 0.4676 0.4919 0.5439 'X-RAY DIFFRACTION' 24 ? refined 3.0774 2.5364 23.1817 0.1606 0.2508 0.2377 -0.0568 -0.0007 -0.0243 -9.1722 21.3942 109.1286 -22.2466 -13.2270 -26.4130 -0.2350 0.2918 0.1452 0.5085 -0.2768 0.5082 -0.2947 0.1974 0.5119 'X-RAY DIFFRACTION' 25 ? refined 2.8543 -2.5424 28.9653 0.3833 0.1887 0.2222 0.0119 0.0861 0.0383 -37.0645 2.3341 -18.4106 6.1146 18.2591 16.3855 -0.7110 -0.6349 -0.1565 -0.3906 0.6335 -0.2130 1.2969 0.6083 0.0775 'X-RAY DIFFRACTION' 26 ? refined 0.1425 0.6967 25.7545 0.2269 0.2339 0.2251 -0.0339 0.0229 0.0085 6.8665 2.6342 -0.0140 3.6303 15.8893 -7.4169 -0.2463 0.2643 -0.1261 0.0614 0.3957 -0.1924 0.2585 0.7660 -0.1493 'X-RAY DIFFRACTION' 27 ? refined -1.2412 -0.5688 33.1204 0.2729 0.2531 0.1649 -0.0380 0.0321 0.0577 -10.1660 -24.2274 47.9807 -2.5773 7.4818 8.3416 -0.7835 0.0564 -0.3690 0.1475 0.1313 -0.0198 0.1707 -0.6070 0.6523 'X-RAY DIFFRACTION' 28 ? refined -3.0786 0.1943 28.2931 0.1950 0.2160 0.2190 -0.0334 -0.0068 0.0024 -3.7392 30.5541 50.4288 7.7900 1.0676 -26.9825 -0.3723 -0.0949 -0.3595 -0.0542 0.4762 0.6386 0.6481 -0.4029 -0.1039 'X-RAY DIFFRACTION' 29 ? refined -6.1684 2.4174 33.3546 0.3068 0.3860 0.1338 0.0557 0.0141 0.0562 -16.0032 3.4182 -96.1209 6.9011 -13.9362 23.8670 -2.1464 -1.5257 -1.1615 0.8624 1.5533 0.4565 -1.0846 -0.7243 0.5931 'X-RAY DIFFRACTION' 30 ? refined -6.3392 -0.7438 29.3206 0.1800 0.2647 0.2290 -0.0669 -0.0044 0.0120 -1.2355 185.3272 -7.8355 -39.6528 -24.7245 12.4874 -0.2890 0.0847 0.0267 0.7800 0.0739 -0.8428 0.6503 -0.3484 0.2151 'X-RAY DIFFRACTION' 31 ? refined -10.6693 5.5166 30.8363 0.0939 0.3073 0.1915 -0.0736 0.0032 -0.0715 22.5462 99.1579 8.0557 -13.5500 36.6988 -0.6837 -1.0118 -1.1386 0.1943 0.1334 1.5176 0.0263 -1.2568 -0.3291 -0.5059 'X-RAY DIFFRACTION' 32 ? refined -10.5029 1.0916 28.2487 0.0834 0.2167 0.2562 -0.0804 -0.0113 -0.0094 5.0488 92.0636 86.4322 -44.3188 -17.9444 17.8953 -0.0407 0.0734 -0.1095 -0.0767 0.0550 0.1749 -0.0788 -0.5013 -0.0143 'X-RAY DIFFRACTION' 33 ? refined -14.4433 6.1379 26.3795 0.1979 0.1369 0.3987 -0.0634 -0.0548 -0.0060 27.1955 -39.9019 -26.2738 -26.8394 0.6267 -40.7519 -1.2519 -0.8863 0.0119 -0.4573 -0.1782 2.2497 -0.9802 -0.0979 1.4300 'X-RAY DIFFRACTION' 34 ? refined -14.2913 1.3489 27.6848 0.1066 0.2026 0.2755 -0.0720 0.0047 -0.0243 -17.6817 22.6536 107.1232 14.6612 -32.7067 30.3165 0.1292 -0.5096 0.0630 -0.4661 -0.2052 -0.4721 0.0036 -0.3136 0.0760 'X-RAY DIFFRACTION' 35 ? refined -18.0137 3.7555 22.4572 0.3146 0.2856 0.1667 -0.1756 -0.0833 0.0802 59.6155 162.2134 -42.6892 71.8881 -9.6549 1.5461 -1.4804 1.4455 0.7564 2.2728 1.3931 0.4064 -0.9413 0.3748 0.0873 'X-RAY DIFFRACTION' 36 ? refined -18.3580 1.1795 26.6899 0.1741 0.2198 0.2443 -0.0832 -0.0243 0.0199 8.2776 38.3785 61.2367 -19.7388 -2.8114 -3.8300 -0.2251 -0.2312 0.4469 -0.2035 -0.3202 -0.1867 0.2207 0.3154 0.5453 'X-RAY DIFFRACTION' 37 ? refined -20.1023 -0.5850 19.1224 0.1749 0.3344 0.1953 -0.1084 0.0053 0.0244 -41.0798 63.5557 57.0608 -31.7196 -17.0197 23.7012 0.2935 1.0608 0.2487 -0.3870 -1.3218 0.5709 0.6020 -0.2607 1.0284 'X-RAY DIFFRACTION' 38 ? refined -21.0493 -1.6655 24.0961 0.2111 0.2290 0.2570 -0.0829 0.0173 0.0155 4.4227 0.9409 26.3161 -14.3141 11.4269 -10.5879 0.2848 0.1522 -0.0319 -0.1219 -0.5185 -0.1114 -0.4637 0.5255 0.2337 'X-RAY DIFFRACTION' 39 ? refined -21.5352 -6.4913 17.9436 0.2532 0.2330 0.1486 -0.0615 -0.0166 -0.0118 3.6290 58.3032 10.7368 -36.9332 -21.0067 9.8516 0.5185 -0.5715 0.4547 -2.2513 -0.8048 1.4123 0.7825 0.6165 0.2863 'X-RAY DIFFRACTION' 40 ? refined -23.6308 -4.6187 22.2279 0.1695 0.2139 0.2417 -0.0821 0.0259 0.0025 10.6415 13.8311 45.4219 -10.2606 4.4836 4.8193 0.2459 0.0988 0.2733 -0.1429 -0.3695 0.1657 0.2110 0.1296 0.1236 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 1 A 1 1 ? A A 'X-RAY DIFFRACTION' ? 2 2 A 1 1 A 1 1 ? A A 'X-RAY DIFFRACTION' ? 3 3 A 2 2 A 2 2 ? A A 'X-RAY DIFFRACTION' ? 4 4 A 2 2 A 2 2 ? A A 'X-RAY DIFFRACTION' ? 5 5 A 3 3 A 3 3 ? A A 'X-RAY DIFFRACTION' ? 6 6 A 3 3 A 3 3 ? A A 'X-RAY DIFFRACTION' ? 7 7 A 4 4 A 4 4 ? A A 'X-RAY DIFFRACTION' ? 8 8 A 4 4 A 4 4 ? A A 'X-RAY DIFFRACTION' ? 9 9 A 5 5 A 5 5 ? A A 'X-RAY DIFFRACTION' ? 10 10 A 5 5 A 5 5 ? A A 'X-RAY DIFFRACTION' ? 11 11 A 6 6 A 6 6 ? A A 'X-RAY DIFFRACTION' ? 12 12 A 6 6 A 6 6 ? A A 'X-RAY DIFFRACTION' ? 13 13 A 7 7 A 7 7 ? A A 'X-RAY DIFFRACTION' ? 14 14 A 7 7 A 7 7 ? A A 'X-RAY DIFFRACTION' ? 15 15 A 8 8 A 8 8 ? A A 'X-RAY DIFFRACTION' ? 16 16 A 8 8 A 8 8 ? A A 'X-RAY DIFFRACTION' ? 17 17 A 9 9 A 9 9 ? A A 'X-RAY DIFFRACTION' ? 18 18 A 9 9 A 9 9 ? A A 'X-RAY DIFFRACTION' ? 19 19 A 10 10 A 10 10 ? A A 'X-RAY DIFFRACTION' ? 20 20 A 10 10 A 10 10 ? A A 'X-RAY DIFFRACTION' ? 21 21 B 1 11 B 1 11 ? B B 'X-RAY DIFFRACTION' ? 22 22 B 1 11 B 1 11 ? B B 'X-RAY DIFFRACTION' ? 23 23 B 2 12 B 2 12 ? B B 'X-RAY DIFFRACTION' ? 24 24 B 2 12 B 2 12 ? B B 'X-RAY DIFFRACTION' ? 25 25 B 3 13 B 3 13 ? B B 'X-RAY DIFFRACTION' ? 26 26 B 3 13 B 3 13 ? B B 'X-RAY DIFFRACTION' ? 27 27 B 4 14 B 4 14 ? B B 'X-RAY DIFFRACTION' ? 28 28 B 4 14 B 4 14 ? B B 'X-RAY DIFFRACTION' ? 29 29 B 5 15 B 5 15 ? B B 'X-RAY DIFFRACTION' ? 30 30 B 5 15 B 5 15 ? B B 'X-RAY DIFFRACTION' ? 31 31 B 6 16 B 6 16 ? B B 'X-RAY DIFFRACTION' ? 32 32 B 6 16 B 6 16 ? B B 'X-RAY DIFFRACTION' ? 33 33 B 7 17 B 7 17 ? B B 'X-RAY DIFFRACTION' ? 34 34 B 7 17 B 7 17 ? B B 'X-RAY DIFFRACTION' ? 35 35 B 8 18 B 8 18 ? B B 'X-RAY DIFFRACTION' ? 36 36 B 8 18 B 8 18 ? B B 'X-RAY DIFFRACTION' ? 37 37 B 9 19 B 9 19 ? B B 'X-RAY DIFFRACTION' ? 38 38 B 9 19 B 9 19 ? B B 'X-RAY DIFFRACTION' ? 39 39 B 10 20 B 10 20 ? B B 'X-RAY DIFFRACTION' ? 40 40 B 10 20 B 10 20 ? B B 'X-RAY DIFFRACTION' ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 CA CA CA N N 38 DA OP3 O N N 39 DA P P N N 40 DA OP1 O N N 41 DA OP2 O N N 42 DA "O5'" O N N 43 DA "C5'" C N N 44 DA "C4'" C N R 45 DA "O4'" O N N 46 DA "C3'" C N S 47 DA "O3'" O N N 48 DA "C2'" C N N 49 DA "C1'" C N R 50 DA N9 N Y N 51 DA C8 C Y N 52 DA N7 N Y N 53 DA C5 C Y N 54 DA C6 C Y N 55 DA N6 N N N 56 DA N1 N Y N 57 DA C2 C Y N 58 DA N3 N Y N 59 DA C4 C Y N 60 DA HOP3 H N N 61 DA HOP2 H N N 62 DA "H5'" H N N 63 DA "H5''" H N N 64 DA "H4'" H N N 65 DA "H3'" H N N 66 DA "HO3'" H N N 67 DA "H2'" H N N 68 DA "H2''" H N N 69 DA "H1'" H N N 70 DA H8 H N N 71 DA H61 H N N 72 DA H62 H N N 73 DA H2 H N N 74 DC OP3 O N N 75 DC P P N N 76 DC OP1 O N N 77 DC OP2 O N N 78 DC "O5'" O N N 79 DC "C5'" C N N 80 DC "C4'" C N R 81 DC "O4'" O N N 82 DC "C3'" C N S 83 DC "O3'" O N N 84 DC "C2'" C N N 85 DC "C1'" C N R 86 DC N1 N N N 87 DC C2 C N N 88 DC O2 O N N 89 DC N3 N N N 90 DC C4 C N N 91 DC N4 N N N 92 DC C5 C N N 93 DC C6 C N N 94 DC HOP3 H N N 95 DC HOP2 H N N 96 DC "H5'" H N N 97 DC "H5''" H N N 98 DC "H4'" H N N 99 DC "H3'" H N N 100 DC "HO3'" H N N 101 DC "H2'" H N N 102 DC "H2''" H N N 103 DC "H1'" H N N 104 DC H41 H N N 105 DC H42 H N N 106 DC H5 H N N 107 DC H6 H N N 108 DG OP3 O N N 109 DG P P N N 110 DG OP1 O N N 111 DG OP2 O N N 112 DG "O5'" O N N 113 DG "C5'" C N N 114 DG "C4'" C N R 115 DG "O4'" O N N 116 DG "C3'" C N S 117 DG "O3'" O N N 118 DG "C2'" C N N 119 DG "C1'" C N R 120 DG N9 N Y N 121 DG C8 C Y N 122 DG N7 N Y N 123 DG C5 C Y N 124 DG C6 C N N 125 DG O6 O N N 126 DG N1 N N N 127 DG C2 C N N 128 DG N2 N N N 129 DG N3 N N N 130 DG C4 C Y N 131 DG HOP3 H N N 132 DG HOP2 H N N 133 DG "H5'" H N N 134 DG "H5''" H N N 135 DG "H4'" H N N 136 DG "H3'" H N N 137 DG "HO3'" H N N 138 DG "H2'" H N N 139 DG "H2''" H N N 140 DG "H1'" H N N 141 DG H8 H N N 142 DG H1 H N N 143 DG H21 H N N 144 DG H22 H N N 145 DT OP3 O N N 146 DT P P N N 147 DT OP1 O N N 148 DT OP2 O N N 149 DT "O5'" O N N 150 DT "C5'" C N N 151 DT "C4'" C N R 152 DT "O4'" O N N 153 DT "C3'" C N S 154 DT "O3'" O N N 155 DT "C2'" C N N 156 DT "C1'" C N R 157 DT N1 N N N 158 DT C2 C N N 159 DT O2 O N N 160 DT N3 N N N 161 DT C4 C N N 162 DT O4 O N N 163 DT C5 C N N 164 DT C7 C N N 165 DT C6 C N N 166 DT HOP3 H N N 167 DT HOP2 H N N 168 DT "H5'" H N N 169 DT "H5''" H N N 170 DT "H4'" H N N 171 DT "H3'" H N N 172 DT "HO3'" H N N 173 DT "H2'" H N N 174 DT "H2''" H N N 175 DT "H1'" H N N 176 DT H3 H N N 177 DT H71 H N N 178 DT H72 H N N 179 DT H73 H N N 180 DT H6 H N N 181 HOH O O N N 182 HOH H1 H N N 183 HOH H2 H N N 184 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 DA OP3 P sing N N 39 DA OP3 HOP3 sing N N 40 DA P OP1 doub N N 41 DA P OP2 sing N N 42 DA P "O5'" sing N N 43 DA OP2 HOP2 sing N N 44 DA "O5'" "C5'" sing N N 45 DA "C5'" "C4'" sing N N 46 DA "C5'" "H5'" sing N N 47 DA "C5'" "H5''" sing N N 48 DA "C4'" "O4'" sing N N 49 DA "C4'" "C3'" sing N N 50 DA "C4'" "H4'" sing N N 51 DA "O4'" "C1'" sing N N 52 DA "C3'" "O3'" sing N N 53 DA "C3'" "C2'" sing N N 54 DA "C3'" "H3'" sing N N 55 DA "O3'" "HO3'" sing N N 56 DA "C2'" "C1'" sing N N 57 DA "C2'" "H2'" sing N N 58 DA "C2'" "H2''" sing N N 59 DA "C1'" N9 sing N N 60 DA "C1'" "H1'" sing N N 61 DA N9 C8 sing Y N 62 DA N9 C4 sing Y N 63 DA C8 N7 doub Y N 64 DA C8 H8 sing N N 65 DA N7 C5 sing Y N 66 DA C5 C6 sing Y N 67 DA C5 C4 doub Y N 68 DA C6 N6 sing N N 69 DA C6 N1 doub Y N 70 DA N6 H61 sing N N 71 DA N6 H62 sing N N 72 DA N1 C2 sing Y N 73 DA C2 N3 doub Y N 74 DA C2 H2 sing N N 75 DA N3 C4 sing Y N 76 DC OP3 P sing N N 77 DC OP3 HOP3 sing N N 78 DC P OP1 doub N N 79 DC P OP2 sing N N 80 DC P "O5'" sing N N 81 DC OP2 HOP2 sing N N 82 DC "O5'" "C5'" sing N N 83 DC "C5'" "C4'" sing N N 84 DC "C5'" "H5'" sing N N 85 DC "C5'" "H5''" sing N N 86 DC "C4'" "O4'" sing N N 87 DC "C4'" "C3'" sing N N 88 DC "C4'" "H4'" sing N N 89 DC "O4'" "C1'" sing N N 90 DC "C3'" "O3'" sing N N 91 DC "C3'" "C2'" sing N N 92 DC "C3'" "H3'" sing N N 93 DC "O3'" "HO3'" sing N N 94 DC "C2'" "C1'" sing N N 95 DC "C2'" "H2'" sing N N 96 DC "C2'" "H2''" sing N N 97 DC "C1'" N1 sing N N 98 DC "C1'" "H1'" sing N N 99 DC N1 C2 sing N N 100 DC N1 C6 sing N N 101 DC C2 O2 doub N N 102 DC C2 N3 sing N N 103 DC N3 C4 doub N N 104 DC C4 N4 sing N N 105 DC C4 C5 sing N N 106 DC N4 H41 sing N N 107 DC N4 H42 sing N N 108 DC C5 C6 doub N N 109 DC C5 H5 sing N N 110 DC C6 H6 sing N N 111 DG OP3 P sing N N 112 DG OP3 HOP3 sing N N 113 DG P OP1 doub N N 114 DG P OP2 sing N N 115 DG P "O5'" sing N N 116 DG OP2 HOP2 sing N N 117 DG "O5'" "C5'" sing N N 118 DG "C5'" "C4'" sing N N 119 DG "C5'" "H5'" sing N N 120 DG "C5'" "H5''" sing N N 121 DG "C4'" "O4'" sing N N 122 DG "C4'" "C3'" sing N N 123 DG "C4'" "H4'" sing N N 124 DG "O4'" "C1'" sing N N 125 DG "C3'" "O3'" sing N N 126 DG "C3'" "C2'" sing N N 127 DG "C3'" "H3'" sing N N 128 DG "O3'" "HO3'" sing N N 129 DG "C2'" "C1'" sing N N 130 DG "C2'" "H2'" sing N N 131 DG "C2'" "H2''" sing N N 132 DG "C1'" N9 sing N N 133 DG "C1'" "H1'" sing N N 134 DG N9 C8 sing Y N 135 DG N9 C4 sing Y N 136 DG C8 N7 doub Y N 137 DG C8 H8 sing N N 138 DG N7 C5 sing Y N 139 DG C5 C6 sing N N 140 DG C5 C4 doub Y N 141 DG C6 O6 doub N N 142 DG C6 N1 sing N N 143 DG N1 C2 sing N N 144 DG N1 H1 sing N N 145 DG C2 N2 sing N N 146 DG C2 N3 doub N N 147 DG N2 H21 sing N N 148 DG N2 H22 sing N N 149 DG N3 C4 sing N N 150 DT OP3 P sing N N 151 DT OP3 HOP3 sing N N 152 DT P OP1 doub N N 153 DT P OP2 sing N N 154 DT P "O5'" sing N N 155 DT OP2 HOP2 sing N N 156 DT "O5'" "C5'" sing N N 157 DT "C5'" "C4'" sing N N 158 DT "C5'" "H5'" sing N N 159 DT "C5'" "H5''" sing N N 160 DT "C4'" "O4'" sing N N 161 DT "C4'" "C3'" sing N N 162 DT "C4'" "H4'" sing N N 163 DT "O4'" "C1'" sing N N 164 DT "C3'" "O3'" sing N N 165 DT "C3'" "C2'" sing N N 166 DT "C3'" "H3'" sing N N 167 DT "O3'" "HO3'" sing N N 168 DT "C2'" "C1'" sing N N 169 DT "C2'" "H2'" sing N N 170 DT "C2'" "H2''" sing N N 171 DT "C1'" N1 sing N N 172 DT "C1'" "H1'" sing N N 173 DT N1 C2 sing N N 174 DT N1 C6 sing N N 175 DT C2 O2 doub N N 176 DT C2 N3 sing N N 177 DT N3 C4 sing N N 178 DT N3 H3 sing N N 179 DT C4 O4 doub N N 180 DT C4 C5 sing N N 181 DT C5 C7 sing N N 182 DT C5 C6 doub N N 183 DT C7 H71 sing N N 184 DT C7 H72 sing N N 185 DT C7 H73 sing N N 186 DT C6 H6 sing N N 187 HOH O H1 sing N N 188 HOH O H2 sing N N 189 # _ndb_struct_conf_na.entry_id 1L6B _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.644 -0.082 0.088 -3.619 -12.774 2.943 1 A_DC1:DG20_B A 1 ? B 20 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 0.289 -0.222 0.159 -0.676 -2.438 -0.141 2 A_DC2:DG19_B A 2 ? B 19 ? 19 1 1 A DG 3 1_555 B 5CM 8 1_555 -0.328 -0.286 0.141 2.922 -1.025 -6.680 3 A_DG3:5CM18_B A 3 ? B 18 ? 19 1 1 A DG 4 1_555 B DC 7 1_555 -0.203 0.006 0.111 0.230 -12.149 4.350 4 A_DG4:DC17_B A 4 ? B 17 ? 19 1 1 A DT 5 1_555 B DA 6 1_555 0.063 -0.080 0.062 -2.699 -16.581 1.008 5 A_DT5:DA16_B A 5 ? B 16 ? 20 1 1 A DA 6 1_555 B DT 5 1_555 0.030 -0.164 0.105 -2.500 -10.310 2.117 6 A_DA6:DT15_B A 6 ? B 15 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DC 2 1_555 B DG 9 1_555 0.155 2.546 3.507 3.728 5.693 37.453 3.086 0.298 3.837 8.777 -5.747 38.045 1 AA_DC1DC2:DG19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B 5CM 8 1_555 0.018 2.488 3.269 0.021 -1.022 37.028 4.052 -0.025 3.201 -1.609 -0.034 37.042 2 AA_DC2DG3:5CM18DG19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DG 3 1_555 B 5CM 8 1_555 A DG 4 1_555 B DC 7 1_555 -0.579 1.623 3.500 -4.596 3.688 38.041 1.957 0.249 3.678 5.616 6.999 38.477 3 AA_DG3DG4:DC175CM18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DG 4 1_555 B DC 7 1_555 A DT 5 1_555 B DA 6 1_555 -0.302 0.618 3.429 0.655 -1.398 37.559 1.149 0.557 3.399 -2.171 -1.017 37.589 4 AA_DG4DT5:DA16DC17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DT 5 1_555 B DA 6 1_555 A DA 6 1_555 B DT 5 1_555 0.897 1.353 3.295 1.597 1.089 41.507 1.790 -1.092 3.359 1.536 -2.252 41.550 5 AA_DT5DA6:DT15DA16_BB A 5 ? B 16 ? A 6 ? B 15 ? # _atom_sites.entry_id 1L6B _atom_sites.fract_transf_matrix[1][1] 0.015266 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005558 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.040479 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028782 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O P # loop_