HEADER HYDROLASE 11-MAR-02 1L6J TITLE CRYSTAL STRUCTURE OF HUMAN MATRIX METALLOPROTEINASE MMP9 (GELATINASE TITLE 2 B). COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATRIX METALLOPROTEINASE-9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PRO-FORM WITH C-TERMINAL DOMAIN TRUNCATED; COMPND 5 SYNONYM: MMP9, GELATINASE B, GELB; COMPND 6 EC: 3.4.24.35; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BLR (DE3) KEYWDS TWISTED BETA SHEET FLANKED BY HELICES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.A.ELKINS,Y.S.HO,W.W.SMITH,C.A.JANSON,K.J.D'ALESSIO,M.S.MCQUENEY, AUTHOR 2 M.D.CUMMINGS,A.M.ROMANIC REVDAT 5 16-AUG-23 1L6J 1 REMARK LINK REVDAT 4 24-FEB-09 1L6J 1 VERSN REVDAT 3 01-APR-03 1L6J 1 JRNL REVDAT 2 17-JUL-02 1L6J 1 DBREF REVDAT 1 03-JUL-02 1L6J 0 JRNL AUTH P.A.ELKINS,Y.S.HO,W.W.SMITH,C.A.JANSON,K.J.D'ALESSIO, JRNL AUTH 2 M.S.MCQUENEY,M.D.CUMMINGS,A.M.ROMANIC JRNL TITL STRUCTURE OF THE C-TERMINALLY TRUNCATED HUMAN PROMMP9, A JRNL TITL 2 GELATIN-BINDING MATRIX METALLOPROTEINASE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 58 1182 2002 JRNL REFN ISSN 0907-4449 JRNL PMID 12077439 JRNL DOI 10.1107/S0907444902007849 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.1 REMARK 3 NUMBER OF REFLECTIONS : 24477 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1265 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.53 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 20219 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 39 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3180 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.013 ; 0.011 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.840 ; 2.030 REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.76 REMARK 3 BSOL : 250.0 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 STRUCTURE FACTOR ANALYSIS FOR THIS REPORT WAS REMARK 3 MADE BY SFCHECK V 5.3.4 USING ANISOTROPIC SCALING REMARK 3 AND THE BABINET BULK SOLVENT CORRECTION. REMARK 3 THE CORRELATION BETWEEN THE EXPERIMENTAL MAP AND REMARK 3 THE MODEL WAS COMPUTED USING CCP4/SFALL, CCP4/FFT REMARK 3 AND CCP4/OVERLAPMAP. THE DIFFERENCE BETWEEN THE REMARK 3 EXPERIMENTAL PHASES AND THE MODEL PHASES WAS REMARK 3 COMPUTED USING CCP4/SFALL AND CCP4/PHISTATS. REMARK 4 REMARK 4 1L6J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1000015687. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.271632, 1.209997, 1.272917 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34009 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.19400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: PDB ENTRY 1CK7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CHLORIDE, TRIS, HEPES, PH 8.2, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.95800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.97900 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.96850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 14.98950 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.94750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 20 REMARK 465 PRO A 21 REMARK 465 ARG A 22 REMARK 465 GLN A 23 REMARK 465 ARG A 24 REMARK 465 GLN A 25 REMARK 465 SER A 26 REMARK 465 THR A 27 REMARK 465 LEU A 28 REMARK 465 ARG A 56 REMARK 465 VAL A 57 REMARK 465 ALA A 58 REMARK 465 GLU A 59 REMARK 465 MET A 60 REMARK 465 ARG A 61 REMARK 465 GLY A 62 REMARK 465 GLU A 63 REMARK 465 SER A 64 REMARK 465 LYS A 65 REMARK 465 SER A 66 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 174 N - CA - C ANGL. DEV. = -16.2 DEGREES REMARK 500 PRO A 430 C - N - CA ANGL. DEV. = -10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 39 152.67 -47.37 REMARK 500 ALA A 173 -81.72 -141.55 REMARK 500 ALA A 189 -177.04 -175.20 REMARK 500 SER A 211 -153.40 -156.08 REMARK 500 ASP A 226 17.60 58.32 REMARK 500 ARG A 239 146.30 -14.77 REMARK 500 ASP A 266 19.97 53.92 REMARK 500 ASP A 280 -137.29 58.34 REMARK 500 ASP A 309 35.17 -80.68 REMARK 500 ALA A 318 7.36 -65.40 REMARK 500 ASN A 319 105.76 -168.62 REMARK 500 SER A 342 29.89 -144.28 REMARK 500 ARG A 370 152.61 -49.91 REMARK 500 ASP A 390 -155.58 -97.17 REMARK 500 ASP A 410 -164.60 -116.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 99 SG REMARK 620 2 HIS A 401 NE2 104.7 REMARK 620 3 HIS A 405 NE2 117.2 107.3 REMARK 620 4 HIS A 411 NE2 117.7 106.4 102.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 131 OD2 REMARK 620 2 ASP A 206 O 155.5 REMARK 620 3 ASP A 206 OD1 82.9 74.6 REMARK 620 4 GLU A 208 O 77.8 96.5 99.9 REMARK 620 5 HOH A1054 O 81.7 105.9 86.5 157.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 165 O REMARK 620 2 GLY A 197 O 141.6 REMARK 620 3 GLN A 199 O 72.0 72.8 REMARK 620 4 ASP A 201 OD1 91.7 90.5 70.3 REMARK 620 5 HOH A1052 O 115.2 60.1 103.8 149.8 REMARK 620 6 HOH A1084 O 154.4 62.8 124.5 78.2 81.9 REMARK 620 7 HOH A1174 O 70.1 81.6 65.2 135.2 52.5 132.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 175 NE2 REMARK 620 2 ASP A 177 OD2 115.0 REMARK 620 3 HIS A 190 NE2 112.4 116.2 REMARK 620 4 HIS A 203 ND1 102.2 93.4 115.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 182 OD1 REMARK 620 2 GLY A 183 O 91.8 REMARK 620 3 GLY A 186 N 84.5 97.1 REMARK 620 4 LEU A 187 O 83.9 169.5 92.0 REMARK 620 5 ASP A 205 OD2 98.5 81.8 176.8 89.4 REMARK 620 6 GLU A 208 OE2 177.6 89.9 97.0 94.1 80.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 504 DBREF 1L6J A 20 444 UNP P14780 MMP9_HUMAN 20 444 SEQRES 1 A 425 ALA PRO ARG GLN ARG GLN SER THR LEU VAL LEU PHE PRO SEQRES 2 A 425 GLY ASP LEU ARG THR ASN LEU THR ASP ARG GLN LEU ALA SEQRES 3 A 425 GLU GLU TYR LEU TYR ARG TYR GLY TYR THR ARG VAL ALA SEQRES 4 A 425 GLU MET ARG GLY GLU SER LYS SER LEU GLY PRO ALA LEU SEQRES 5 A 425 LEU LEU LEU GLN LYS GLN LEU SER LEU PRO GLU THR GLY SEQRES 6 A 425 GLU LEU ASP SER ALA THR LEU LYS ALA MET ARG THR PRO SEQRES 7 A 425 ARG CYS GLY VAL PRO ASP LEU GLY ARG PHE GLN THR PHE SEQRES 8 A 425 GLU GLY ASP LEU LYS TRP HIS HIS HIS ASN ILE THR TYR SEQRES 9 A 425 TRP ILE GLN ASN TYR SER GLU ASP LEU PRO ARG ALA VAL SEQRES 10 A 425 ILE ASP ASP ALA PHE ALA ARG ALA PHE ALA LEU TRP SER SEQRES 11 A 425 ALA VAL THR PRO LEU THR PHE THR ARG VAL TYR SER ARG SEQRES 12 A 425 ASP ALA ASP ILE VAL ILE GLN PHE GLY VAL ALA GLU HIS SEQRES 13 A 425 GLY ASP GLY TYR PRO PHE ASP GLY LYS ASP GLY LEU LEU SEQRES 14 A 425 ALA HIS ALA PHE PRO PRO GLY PRO GLY ILE GLN GLY ASP SEQRES 15 A 425 ALA HIS PHE ASP ASP ASP GLU LEU TRP SER LEU GLY LYS SEQRES 16 A 425 GLY VAL VAL VAL PRO THR ARG PHE GLY ASN ALA ASP GLY SEQRES 17 A 425 ALA ALA CYS HIS PHE PRO PHE ILE PHE GLU GLY ARG SER SEQRES 18 A 425 TYR SER ALA CYS THR THR ASP GLY ARG SER ASP GLY LEU SEQRES 19 A 425 PRO TRP CYS SER THR THR ALA ASN TYR ASP THR ASP ASP SEQRES 20 A 425 ARG PHE GLY PHE CYS PRO SER GLU ARG LEU TYR THR ARG SEQRES 21 A 425 ASP GLY ASN ALA ASP GLY LYS PRO CYS GLN PHE PRO PHE SEQRES 22 A 425 ILE PHE GLN GLY GLN SER TYR SER ALA CYS THR THR ASP SEQRES 23 A 425 GLY ARG SER ASP GLY TYR ARG TRP CYS ALA THR THR ALA SEQRES 24 A 425 ASN TYR ASP ARG ASP LYS LEU PHE GLY PHE CYS PRO THR SEQRES 25 A 425 ARG ALA ASP SER THR VAL MET GLY GLY ASN SER ALA GLY SEQRES 26 A 425 GLU LEU CYS VAL PHE PRO PHE THR PHE LEU GLY LYS GLU SEQRES 27 A 425 TYR SER THR CYS THR SER GLU GLY ARG GLY ASP GLY ARG SEQRES 28 A 425 LEU TRP CYS ALA THR THR SER ASN PHE ASP SER ASP LYS SEQRES 29 A 425 LYS TRP GLY PHE CYS PRO ASP GLN GLY TYR SER LEU PHE SEQRES 30 A 425 LEU VAL ALA ALA HIS GLU PHE GLY HIS ALA LEU GLY LEU SEQRES 31 A 425 ASP HIS SER SER VAL PRO GLU ALA LEU MET TYR PRO MET SEQRES 32 A 425 TYR ARG PHE THR GLU GLY PRO PRO LEU HIS LYS ASP ASP SEQRES 33 A 425 VAL ASN GLY ILE ARG HIS LEU TYR GLY HET ZN A 500 1 HET ZN A 501 1 HET CA A 502 1 HET CA A 503 1 HET CA A 504 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 CA 3(CA 2+) FORMUL 7 HOH *191(H2 O) HELIX 1 1 THR A 40 TYR A 52 1 13 HELIX 2 2 LEU A 67 SER A 79 1 13 HELIX 3 3 ASP A 87 ARG A 95 1 9 HELIX 4 4 PRO A 133 VAL A 151 1 19 HELIX 5 5 ASN A 261 ASP A 266 1 6 HELIX 6 6 ASN A 319 LYS A 324 1 6 HELIX 7 7 ARG A 332 THR A 336 5 5 HELIX 8 8 ASN A 378 LYS A 383 1 6 HELIX 9 9 LEU A 395 LEU A 407 1 13 HELIX 10 10 HIS A 432 TYR A 443 1 12 SHEET 1 A 5 THR A 155 VAL A 159 0 SHEET 2 A 5 ASN A 120 ILE A 125 1 N TYR A 123 O VAL A 159 SHEET 3 A 5 ILE A 166 GLY A 171 1 O ILE A 168 N TRP A 124 SHEET 4 A 5 ALA A 202 ASP A 205 1 O PHE A 204 N GLN A 169 SHEET 5 A 5 ALA A 189 ALA A 191 -1 N HIS A 190 O HIS A 203 SHEET 1 B 2 TRP A 210 SER A 211 0 SHEET 2 B 2 TYR A 393 SER A 394 1 O TYR A 393 N SER A 211 SHEET 1 C 2 PHE A 234 ILE A 235 0 SHEET 2 C 2 SER A 240 TYR A 241 -1 O TYR A 241 N PHE A 234 SHEET 1 D 2 TRP A 255 SER A 257 0 SHEET 2 D 2 PHE A 268 PHE A 270 -1 O GLY A 269 N CYS A 256 SHEET 1 E 2 PHE A 292 PHE A 294 0 SHEET 2 E 2 GLN A 297 TYR A 299 -1 O GLN A 297 N PHE A 294 SHEET 1 F 2 TRP A 313 ALA A 315 0 SHEET 2 F 2 PHE A 326 PHE A 328 -1 O GLY A 327 N CYS A 314 SHEET 1 G 2 PHE A 351 PHE A 353 0 SHEET 2 G 2 LYS A 356 TYR A 358 -1 O TYR A 358 N PHE A 351 SHEET 1 H 2 TRP A 372 ALA A 374 0 SHEET 2 H 2 TRP A 385 PHE A 387 -1 O GLY A 386 N CYS A 373 SSBOND 1 CYS A 230 CYS A 256 1555 1555 2.03 SSBOND 2 CYS A 244 CYS A 271 1555 1555 2.03 SSBOND 3 CYS A 288 CYS A 314 1555 1555 2.01 SSBOND 4 CYS A 302 CYS A 329 1555 1555 2.04 SSBOND 5 CYS A 347 CYS A 373 1555 1555 2.02 SSBOND 6 CYS A 361 CYS A 388 1555 1555 2.03 LINK SG CYS A 99 ZN ZN A 500 1555 1555 2.32 LINK OD2 ASP A 131 CA CA A 503 1555 1555 2.76 LINK O ASP A 165 CA CA A 504 1555 1555 2.75 LINK NE2 HIS A 175 ZN ZN A 501 1555 1555 2.19 LINK OD2 ASP A 177 ZN ZN A 501 1555 1555 2.17 LINK OD1 ASP A 182 CA CA A 502 1555 1555 2.61 LINK O GLY A 183 CA CA A 502 1555 1555 2.44 LINK N GLY A 186 CA CA A 502 1555 1555 2.86 LINK O LEU A 187 CA CA A 502 1555 1555 2.50 LINK NE2 HIS A 190 ZN ZN A 501 1555 1555 2.24 LINK O GLY A 197 CA CA A 504 1555 1555 2.85 LINK O GLN A 199 CA CA A 504 1555 1555 3.03 LINK OD1 ASP A 201 CA CA A 504 1555 1555 2.66 LINK ND1 HIS A 203 ZN ZN A 501 1555 1555 2.13 LINK OD2 ASP A 205 CA CA A 502 1555 1555 2.46 LINK O ASP A 206 CA CA A 503 1555 1555 2.52 LINK OD1 ASP A 206 CA CA A 503 1555 1555 2.72 LINK OE2 GLU A 208 CA CA A 502 1555 1555 2.46 LINK O GLU A 208 CA CA A 503 1555 1555 2.65 LINK NE2 HIS A 401 ZN ZN A 500 1555 1555 2.26 LINK NE2 HIS A 405 ZN ZN A 500 1555 1555 2.05 LINK NE2 HIS A 411 ZN ZN A 500 1555 1555 2.21 LINK CA CA A 503 O HOH A1054 1555 1555 2.78 LINK CA CA A 504 O HOH A1052 1555 1555 3.04 LINK CA CA A 504 O HOH A1084 1555 1555 3.34 LINK CA CA A 504 O HOH A1174 1555 1555 2.96 CISPEP 1 PHE A 232 PRO A 233 0 -0.27 CISPEP 2 PHE A 290 PRO A 291 0 0.27 CISPEP 3 PHE A 349 PRO A 350 0 -0.06 SITE 1 AC1 4 CYS A 99 HIS A 401 HIS A 405 HIS A 411 SITE 1 AC2 4 HIS A 175 ASP A 177 HIS A 190 HIS A 203 SITE 1 AC3 6 ASP A 182 GLY A 183 GLY A 186 LEU A 187 SITE 2 AC3 6 ASP A 205 GLU A 208 SITE 1 AC4 4 ASP A 131 ASP A 206 GLU A 208 HOH A1054 SITE 1 AC5 7 ALA A 164 ASP A 165 GLY A 197 GLN A 199 SITE 2 AC5 7 ASP A 201 HOH A1052 HOH A1174 CRYST1 123.685 123.685 89.937 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008085 0.004668 0.000000 0.00000 SCALE2 0.000000 0.009336 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011119 0.00000