HEADER GENE REGULATION 19-MAR-02 1L8C TITLE STRUCTURAL BASIS FOR HIF-1ALPHA/CBP RECOGNITION IN THE CELLULAR TITLE 2 HYPOXIC RESPONSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CREB-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TAZ1 (TRANSCRIPTION ACTIVATION ZINC FINGER) DOMAIN, COMPND 5 RESIDUES 345-439; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1 ALPHA; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: CTAD (C-TERMINAL ACTIVATION) DOMAIN, RESIDUES 776-826; COMPND 11 SYNONYM: HIF-1 ALPHA, ARNT INTERACTING PROTEIN, MEMBER OF PAS PROTEIN COMPND 12 1, MOP1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GENE REGULATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.A.DAMES,M.MARTINEZ-YAMOUT,R.N.DE GUZMAN,H.J.DYSON,P.E.WRIGHT REVDAT 4 23-FEB-22 1L8C 1 REMARK LINK REVDAT 3 24-FEB-09 1L8C 1 VERSN REVDAT 2 24-APR-02 1L8C 1 JRNL REVDAT 1 10-APR-02 1L8C 0 JRNL AUTH S.A.DAMES,M.MARTINEZ-YAMOUT,R.N.DE GUZMAN,H.J.DYSON, JRNL AUTH 2 P.E.WRIGHT JRNL TITL STRUCTURAL BASIS FOR HIF-1 ALPHA /CBP RECOGNITION IN THE JRNL TITL 2 CELLULAR HYPOXIC RESPONSE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 5271 2002 JRNL REFN ISSN 0027-8424 JRNL PMID 11959977 JRNL DOI 10.1073/PNAS.082121399 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER VERSION 6 REMARK 3 AUTHORS : PEARLMAN, D.A. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PEARLMAN, D.A. ET AL. (1995) COMP. REMARK 3 PHYS.COMMU. REMARK 4 REMARK 4 1L8C COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1000015732. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.1 REMARK 210 IONIC STRENGTH : 2.0 MILLIMOLAR REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM 13C, 15N-TAZ1, 2MM HIF-1A; REMARK 210 1MM 13C, 15N-HIF-1A, 2MM TAZ1; REMARK 210 10MM D-TRIS, 10MM D-DTT, 0.02% REMARK 210 NAN3, 0.5MM ZNSO4 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D C(CO)NH- REMARK 210 TOCSY; 3D H(CCO)NH-TOCSY; 3D CCH- REMARK 210 TOCSY; 3D CCH-COSY; 3D HCCH- REMARK 210 TOCSY; 3D 15N TOCSY-HSQC; 2D REMARK 210 CBCGCD; 2D CBCGCE; 3D HNHA; 3D REMARK 210 HNHB; 3D HACAHB-COSY; 3D 15N REMARK 210 NOESY-HSQC; 3D 13C HSQC-NOESY; REMARK 210 3D 13C,15N SIMULT. NOESY; 3D 13C REMARK 210 HMQC-NOESY; 3D 12C-FILTERED/13C- REMARK 210 EDITED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX800; DRX600 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR, NMRPIPE, NMRVIEW REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 1 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 2 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 3 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 4 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 5 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 6 ARG B 143 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 7 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 7 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 7 ARG B 143 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 10 ARG A 33 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 11 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 11 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 12 ARG A 25 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 12 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 13 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 13 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 15 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 15 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 16 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 16 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 16 ARG B 133 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 17 ARG A 6 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 17 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 19 ARG B 104 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 20 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 31 -67.67 -144.16 REMARK 500 1 SER A 36 -52.15 -135.87 REMARK 500 1 VAL A 84 -52.51 -134.62 REMARK 500 1 CYS B 103 2.70 -67.08 REMARK 500 1 LEU B 105 58.63 37.42 REMARK 500 1 SER B 113 -58.60 67.67 REMARK 500 1 GLN B 117 62.59 -115.94 REMARK 500 2 PRO A 3 -106.52 -84.50 REMARK 500 2 ASN A 29 145.14 71.47 REMARK 500 2 SER A 36 -61.89 -135.62 REMARK 500 2 ALA A 55 -73.51 -80.88 REMARK 500 2 VAL A 84 -51.60 -133.05 REMARK 500 2 CYS B 103 35.87 -81.30 REMARK 500 2 ARG B 104 -75.22 -43.83 REMARK 500 2 GLN B 117 63.69 -117.78 REMARK 500 2 LEU B 135 86.29 0.59 REMARK 500 3 ALA A 34 -69.87 -135.72 REMARK 500 3 HIS A 80 3.25 -68.47 REMARK 500 3 ASP A 81 20.22 -146.25 REMARK 500 3 VAL A 84 -52.13 -123.62 REMARK 500 3 ALA A 91 -71.28 -131.64 REMARK 500 3 GLU B 112 -61.79 -91.21 REMARK 500 3 GLN B 117 63.77 -110.66 REMARK 500 3 LEU B 135 89.58 0.43 REMARK 500 4 GLU A 31 -86.04 -144.59 REMARK 500 4 ALA A 34 -63.40 -133.08 REMARK 500 4 SER A 36 -30.56 -133.38 REMARK 500 4 VAL A 84 -43.79 -135.65 REMARK 500 4 LEU B 101 -47.00 -147.31 REMARK 500 4 ARG B 104 -69.61 -26.04 REMARK 500 4 SER B 113 19.55 55.59 REMARK 500 4 GLN B 117 60.65 -119.19 REMARK 500 5 ASN A 29 -55.79 -153.13 REMARK 500 5 ARG A 33 74.94 -118.80 REMARK 500 5 PRO A 83 5.71 -63.29 REMARK 500 5 VAL A 84 -51.11 -140.84 REMARK 500 5 ALA A 91 -57.71 -131.61 REMARK 500 5 LEU B 101 99.00 -165.80 REMARK 500 5 ALA B 102 -74.42 -153.02 REMARK 500 5 ARG B 104 -67.07 179.67 REMARK 500 5 ASN B 134 -53.59 -139.59 REMARK 500 6 ASN A 29 107.80 -170.26 REMARK 500 6 VAL A 84 -51.62 -126.22 REMARK 500 6 CYS B 103 37.78 -80.02 REMARK 500 6 SER B 113 -50.72 -159.40 REMARK 500 7 GLU A 31 -101.50 -137.35 REMARK 500 7 ALA A 34 -65.61 -131.10 REMARK 500 7 PRO A 83 0.48 -62.86 REMARK 500 7 VAL A 84 -49.63 -138.40 REMARK 500 7 LEU B 101 -91.68 -146.53 REMARK 500 REMARK 500 THIS ENTRY HAS 145 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 HIS A 73 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 96 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 CYS A 22 SG 114.8 REMARK 620 3 CYS A 35 SG 110.5 110.4 REMARK 620 4 CYS A 40 SG 110.2 107.3 103.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 97 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 49 NE2 REMARK 620 2 CYS A 53 SG 106.9 REMARK 620 3 CYS A 59 SG 115.7 108.3 REMARK 620 4 CYS A 64 SG 108.7 107.3 109.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 98 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 73 NE2 REMARK 620 2 CYS A 77 SG 111.5 REMARK 620 3 CYS A 82 SG 111.9 108.0 REMARK 620 4 CYS A 85 SG 111.0 107.9 106.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 96 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 97 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 98 REMARK 999 REMARK 999 SEQEUNCE REMARK 999 AUTHOR STATES RESIDUE GLY56 IS A SEQUENCE VARIANT DBREF 1L8C A 1 95 UNP P45481 CBP_MOUSE 345 439 DBREF 1L8C B 99 149 UNP Q16665 HIF1A_HUMAN 776 826 SEQADV 1L8C GLY A 56 UNP P45481 PRO 400 SEE REMARK 999 SEQRES 1 A 95 ALA ASP PRO GLU LYS ARG LYS LEU ILE GLN GLN GLN LEU SEQRES 2 A 95 VAL LEU LEU LEU HIS ALA HIS LYS CYS GLN ARG ARG GLU SEQRES 3 A 95 GLN ALA ASN GLY GLU VAL ARG ALA CYS SER LEU PRO HIS SEQRES 4 A 95 CYS ARG THR MET LYS ASN VAL LEU ASN HIS MET THR HIS SEQRES 5 A 95 CYS GLN ALA GLY LYS ALA CYS GLN VAL ALA HIS CYS ALA SEQRES 6 A 95 SER SER ARG GLN ILE ILE SER HIS TRP LYS ASN CYS THR SEQRES 7 A 95 ARG HIS ASP CYS PRO VAL CYS LEU PRO LEU LYS ASN ALA SEQRES 8 A 95 SER ASP LYS ARG SEQRES 1 B 51 SER ASP LEU ALA CYS ARG LEU LEU GLY GLN SER MET ASP SEQRES 2 B 51 GLU SER GLY LEU PRO GLN LEU THR SER TYR ASP CYS GLU SEQRES 3 B 51 VAL ASN ALA PRO ILE GLN GLY SER ARG ASN LEU LEU GLN SEQRES 4 B 51 GLY GLU GLU LEU LEU ARG ALA LEU ASP GLN VAL ASN HET ZN A 96 1 HET ZN A 97 1 HET ZN A 98 1 HETNAM ZN ZINC ION FORMUL 3 ZN 3(ZN 2+) HELIX 1 1 ASP A 2 ASN A 29 1 28 HELIX 2 2 HIS A 39 CYS A 53 1 15 HELIX 3 3 ALA A 55 CYS A 59 5 5 HELIX 4 4 VAL A 61 CYS A 77 1 17 HELIX 5 5 VAL A 84 ASN A 90 1 7 HELIX 6 6 LEU B 106 ASP B 111 1 6 HELIX 7 7 THR B 119 ALA B 127 1 9 HELIX 8 8 GLY B 138 GLN B 147 1 10 LINK NE2 HIS A 18 ZN ZN A 96 1555 1555 2.09 LINK SG CYS A 22 ZN ZN A 96 1555 1555 2.29 LINK SG CYS A 35 ZN ZN A 96 1555 1555 2.27 LINK SG CYS A 40 ZN ZN A 96 1555 1555 2.26 LINK NE2 HIS A 49 ZN ZN A 97 1555 1555 2.07 LINK SG CYS A 53 ZN ZN A 97 1555 1555 2.26 LINK SG CYS A 59 ZN ZN A 97 1555 1555 2.27 LINK SG CYS A 64 ZN ZN A 97 1555 1555 2.26 LINK NE2 HIS A 73 ZN ZN A 98 1555 1555 2.08 LINK SG CYS A 77 ZN ZN A 98 1555 1555 2.27 LINK SG CYS A 82 ZN ZN A 98 1555 1555 2.27 LINK SG CYS A 85 ZN ZN A 98 1555 1555 2.26 SITE 1 AC1 5 HIS A 18 CYS A 22 CYS A 35 CYS A 40 SITE 2 AC1 5 LYS A 44 SITE 1 AC2 4 HIS A 49 CYS A 53 CYS A 59 CYS A 64 SITE 1 AC3 5 HIS A 73 CYS A 77 ARG A 79 CYS A 82 SITE 2 AC3 5 CYS A 85 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1